Metagenome Family F096630

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096630
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	61 residues
Representative Sequence	VYAFFCQMPKTKARSGAFQKGAYVRSNRRQGHVALHHFETAHYCECIGHYKKRHTHAP
Number of Associated Samples	45
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	40.78 %
% of genes near scaffold ends (potentially truncated)	70.19 %
% of genes from short scaffolds (< 2000 bps)	77.88 %
Associated GOLD sequencing projects	44
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.885 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment (25.961 % of family members)
Environment Ontology (ENVO)	Unclassified (54.808 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (41.346 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF10120	ThiP_synth	2.88
PF13671	AAA_33	2.88
PF14691	Fer4_20	1.92
PF02771	Acyl-CoA_dh_N	1.92
PF01991	vATP-synt_E	1.92
PF03668	ATP_bind_2	1.92
PF00005	ABC_tran	1.92
PF14535	AMP-binding_C_2	1.92
PF13649	Methyltransf_25	0.96
PF01887	SAM_HAT_N	0.96
PF09723	Zn-ribbon_8	0.96
PF02133	Transp_cyt_pur	0.96
PF03968	LptD_N	0.96
PF13560	HTH_31	0.96
PF02535	Zip	0.96
PF04016	DUF364	0.96
PF00885	DMRL_synthase	0.96
PF00464	SHMT	0.96
PF13692	Glyco_trans_1_4	0.96
PF13478	XdhC_C	0.96
PF00342	PGI	0.96
PF01926	MMR_HSR1	0.96
PF13534	Fer4_17	0.96
PF01245	Ribosomal_L19	0.96
PF00753	Lactamase_B	0.96
PF09838	DUF2065	0.96
PF13404	HTH_AsnC-type	0.96
PF00881	Nitroreductase	0.96
PF09360	zf-CDGSH	0.96
PF00724	Oxidored_FMN	0.96
PF01875	Memo	0.96
PF01592	NifU_N	0.96
PF00132	Hexapep	0.96
PF01513	NAD_kinase	0.96
PF03358	FMN_red	0.96
PF02515	CoA_transf_3	0.96
PF00381	PTS-HPr	0.96
PF01230	HIT	0.96
PF02347	GDC-P	0.96
PF01790	LGT	0.96
PF07729	FCD	0.96
PF13458	Peripla_BP_6	0.96
PF13432	TPR_16	0.96
PF02616	SMC_ScpA	0.96
PF03449	GreA_GreB_N	0.96
PF05016	ParE_toxin	0.96
PF00583	Acetyltransf_1	0.96
PF04055	Radical_SAM	0.96
PF00108	Thiolase_N	0.96
PF03483	B3_4	0.96
PF01975	SurE	0.96
PF02737	3HCDH_N	0.96
PF01042	Ribonuc_L-PSP	0.96
PF04020	Phage_holin_4_2	0.96
PF00696	AA_kinase	0.96
PF13298	LigD_N	0.96
PF00892	EamA	0.96
PF01209	Ubie_methyltran	0.96
PF01416	PseudoU_synth_1	0.96
PF02348	CTP_transf_3	0.96
PF01656	CbiA	0.96
PF01472	PUA	0.96
PF01165	Ribosomal_S21	0.96
PF01609	DDE_Tnp_1	0.96
PF02880	PGM_PMM_III	0.96
PF13279	4HBT_2	0.96
PF02547	Queuosine_synth	0.96
PF00266	Aminotran_5	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1390	Archaeal/vacuolar-type H+-ATPase subunit E/Vma4	Energy production and conversion [C]	1.92
COG1660	RNase adaptor protein RapZ for GlmZ sRNA degradation, contains a P-loop ATPase domain	Signal transduction mechanisms [T]	1.92
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.92
COG1950	Uncharacterized membrane protein YvlD, DUF360 family	Function unknown [S]	0.96
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.96
COG1354	Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family	Replication, recombination and repair [L]	0.96
COG1355	Predicted class III extradiol dioxygenase, MEMO1 family	General function prediction only [R]	0.96
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	0.96
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.96
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.96
COG1861	Spore coat polysaccharide biosynthesis protein SpsF, cytidylyltransferase family	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1902	2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family	Energy production and conversion [C]	0.96
COG1912	Stereoselective (R,S)-S-adenosylmethionine hydrolase (adenosine-forming)	Defense mechanisms [V]	0.96
COG1925	HPr or related phosphotransfer protein	Signal transduction mechanisms [T]	0.96
COG1212	CMP-2-keto-3-deoxyoctulosonic acid synthetase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG2014	Uncharacterized conserved protein, contains DUF4213 and DUF364 domains	Function unknown [S]	0.96
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.96
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.96
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.96
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.96
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.96
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.96
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.96
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.96
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.96
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.96
COG0428	Zinc transporter ZupT	Inorganic ion transport and metabolism [P]	0.96
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0054	6,7-dimethyl-8-ribityllumazine synthase (Riboflavin synthase beta chain)	Coenzyme transport and metabolism [H]	0.96
COG0101	tRNA U38,U39,U40 pseudouridine synthase TruA	Translation, ribosomal structure and biogenesis [J]	0.96
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	0.96
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.96
COG0166	Glucose-6-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.96
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.96
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.96
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.96
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.96
COG0335	Ribosomal protein L19	Translation, ribosomal structure and biogenesis [J]	0.96
COG0403	Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain	Amino acid transport and metabolism [E]	0.96
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.96
COG0496	Broad specificity polyphosphatase and 5'/3'-nucleotidase SurE	Replication, recombination and repair [L]	0.96
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG0682	Prolipoprotein diacylglyceryltransferase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.96
COG0809	S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)	Translation, ribosomal structure and biogenesis [J]	0.96
COG0822	Fe-S cluster assembly scaffold protein IscU, NifU family	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.96
COG1003	Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	Amino acid transport and metabolism [E]	0.96
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1083	CMP-N-acetylneuraminic acid synthetase, NeuA/PseF family	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.77 %
Unclassified	root	N/A	44.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.77 %
Unclassified	root	N/A	44.23 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.88 %
Unclassified	root	N/A	44.23 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.88 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.92 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	32.69 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.88 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.96 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	0.96 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	32.69 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1.92 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	0.96 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	0.96 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.96 %
unclassified Firmicutes sensu stricto	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	4.81 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.96 %
Firmicutes bacterium ML8_F2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ML8_F2	0.96 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	0.96 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.96 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.96 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.88 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	1.92 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	0.96 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.96 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.96 %
Firmicutes bacterium ML8_F2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ML8_F2	0.96 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.96 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.88 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	1.92 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	0.96 %
Desulfobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacterium	0.96 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.96 %
Firmicutes bacterium ML8_F2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ML8_F2	0.96 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.96 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.88 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	1.92 %
unclassified Desulfobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacterium → unclassified Desulfobacterium	0.96 %
unclassified Nitrososphaera	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera	0.96 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.96 %
Firmicutes bacterium ML8_F2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ML8_F2	0.96 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.96 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.23 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.88 %
delta proteobacterium NaphS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	1.92 %
Nitrososphaera sp.	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	0.96 %
Desulfobacterium sp. 4572_20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacterium → unclassified Desulfobacterium → Desulfobacterium sp. 4572_20	0.96 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.96 %
Firmicutes bacterium ML8_F2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ML8_F2	0.96 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.96 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001753\|JGI2171J19970_10033516	Not Available	2127	Open in IMG/M
3300001753\|JGI2171J19970_10046059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ML8_F2	1736	Open in IMG/M
3300001753\|JGI2171J19970_10071415	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1283	Open in IMG/M
3300001753\|JGI2171J19970_10230610	Not Available	592	Open in IMG/M
3300005346\|Ga0074242_12147751	All Organisms → cellular organisms → Bacteria	1420	Open in IMG/M
3300005613\|Ga0074649_1000714	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	42750	Open in IMG/M
3300005613\|Ga0074649_1002043	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	22514	Open in IMG/M
3300005613\|Ga0074649_1003986	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	14008	Open in IMG/M
3300005613\|Ga0074649_1005562	All Organisms → cellular organisms → Bacteria → Proteobacteria	10910	Open in IMG/M
3300005613\|Ga0074649_1039473	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2208	Open in IMG/M
3300005613\|Ga0074649_1055386	All Organisms → cellular organisms → Bacteria	1683	Open in IMG/M
3300005820\|Ga0078747_107137	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2974	Open in IMG/M
3300005821\|Ga0078746_1000204	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	11279	Open in IMG/M
3300005821\|Ga0078746_1013216	Not Available	1662	Open in IMG/M
3300005821\|Ga0078746_1059532	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300005822\|Ga0078744_1005462	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2933	Open in IMG/M
3300005822\|Ga0078744_1005658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2881	Open in IMG/M
3300005822\|Ga0078744_1013384	All Organisms → cellular organisms → Bacteria → Proteobacteria	1831	Open in IMG/M
3300005822\|Ga0078744_1013699	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1809	Open in IMG/M
3300005822\|Ga0078744_1016003	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1672	Open in IMG/M
3300005822\|Ga0078744_1074236	Not Available	779	Open in IMG/M
3300005822\|Ga0078744_1097832	Not Available	687	Open in IMG/M
3300005823\|Ga0078745_1085556	Not Available	906	Open in IMG/M
3300005918\|Ga0075116_10037310	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2041	Open in IMG/M
3300005936\|Ga0075124_10279642	Not Available	596	Open in IMG/M
3300007900\|Ga0111031_1003883	Not Available	3059	Open in IMG/M
3300007900\|Ga0111031_1034659	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7132	Open in IMG/M
3300007900\|Ga0111031_1059708	Not Available	1394	Open in IMG/M
3300007900\|Ga0111031_1064881	Not Available	1087	Open in IMG/M
3300007900\|Ga0111031_1082737	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1376	Open in IMG/M
3300007900\|Ga0111031_1125545	Not Available	1480	Open in IMG/M
3300008517\|Ga0111034_1125415	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5090	Open in IMG/M
3300009135\|Ga0118736_10010220	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2073	Open in IMG/M
3300009135\|Ga0118736_10272575	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	555	Open in IMG/M
3300009136\|Ga0118735_10010825	All Organisms → cellular organisms → Bacteria	2940	Open in IMG/M
3300009529\|Ga0114919_10726469	Not Available	675	Open in IMG/M
3300010993\|Ga0139329_109214	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300011118\|Ga0114922_10196864	All Organisms → cellular organisms → Bacteria	1701	Open in IMG/M
3300011118\|Ga0114922_10246377	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1499	Open in IMG/M
3300011118\|Ga0114922_10264335	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacterium → unclassified Desulfobacterium → Desulfobacterium sp. 4572_20	1441	Open in IMG/M
3300011118\|Ga0114922_10269209	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1426	Open in IMG/M
3300011118\|Ga0114922_10377795	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300011118\|Ga0114922_10437366	Not Available	1084	Open in IMG/M
3300011118\|Ga0114922_10451810	Not Available	1065	Open in IMG/M
3300011118\|Ga0114922_10866888	Not Available	736	Open in IMG/M
3300011118\|Ga0114922_10876085	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	732	Open in IMG/M
3300011118\|Ga0114922_10889808	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300011118\|Ga0114922_11008917	Not Available	676	Open in IMG/M
3300011118\|Ga0114922_11088192	Not Available	648	Open in IMG/M
3300011118\|Ga0114922_11412616	Not Available	560	Open in IMG/M
3300017971\|Ga0180438_10009088	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	12474	Open in IMG/M
3300017971\|Ga0180438_10392881	Not Available	1052	Open in IMG/M
3300017989\|Ga0180432_11158855	Not Available	520	Open in IMG/M
3300018080\|Ga0180433_10665377	Not Available	776	Open in IMG/M
3300018080\|Ga0180433_10761927	Not Available	716	Open in IMG/M
3300022846\|Ga0222699_1017597	All Organisms → cellular organisms → Bacteria	1485	Open in IMG/M
3300027888\|Ga0209635_10299849	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1277	Open in IMG/M
3300027888\|Ga0209635_10586284	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	835	Open in IMG/M
3300027893\|Ga0209636_10582298	Not Available	905	Open in IMG/M
3300027901\|Ga0209427_10211462	All Organisms → cellular organisms → Bacteria	1613	Open in IMG/M
3300027901\|Ga0209427_10292504	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300031255\|Ga0315554_1182308	Not Available	708	Open in IMG/M
3300031257\|Ga0315555_1109906	Not Available	1246	Open in IMG/M
3300031275\|Ga0307437_1091719	Not Available	924	Open in IMG/M
3300031275\|Ga0307437_1097306	Not Available	886	Open in IMG/M
3300031275\|Ga0307437_1109100	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300031275\|Ga0307437_1212962	Not Available	513	Open in IMG/M
3300031281\|Ga0307420_1006113	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	5018	Open in IMG/M
3300031281\|Ga0307420_1007322	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4551	Open in IMG/M
3300031358\|Ga0307438_1106049	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	802	Open in IMG/M
3300031358\|Ga0307438_1165418	Not Available	573	Open in IMG/M
3300031360\|Ga0307444_1015275	Not Available	2802	Open in IMG/M
3300031360\|Ga0307444_1169446	Not Available	650	Open in IMG/M
3300031379\|Ga0307434_1136718	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	678	Open in IMG/M
3300031537\|Ga0307419_10114652	Not Available	1048	Open in IMG/M
3300031551\|Ga0315548_1083497	Not Available	1311	Open in IMG/M
3300031551\|Ga0315548_1097672	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1158	Open in IMG/M
3300031551\|Ga0315548_1167131	Not Available	745	Open in IMG/M
3300031551\|Ga0315548_1213502	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300031553\|Ga0315547_1098216	Not Available	1018	Open in IMG/M
3300031554\|Ga0315544_1025311	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2624	Open in IMG/M
3300031554\|Ga0315544_1043525	All Organisms → cellular organisms → Bacteria	1751	Open in IMG/M
3300031554\|Ga0315544_1044372	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1726	Open in IMG/M
3300031554\|Ga0315544_1058629	Not Available	1395	Open in IMG/M
3300031554\|Ga0315544_1172922	Not Available	603	Open in IMG/M
3300031586\|Ga0315541_1100879	Not Available	963	Open in IMG/M
3300031620\|Ga0315552_1088147	Not Available	1116	Open in IMG/M
3300031624\|Ga0315545_1115880	Not Available	1173	Open in IMG/M
3300031645\|Ga0307990_1280965	Not Available	603	Open in IMG/M
3300031650\|Ga0315539_1091059	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1093	Open in IMG/M
3300031650\|Ga0315539_1134711	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300031650\|Ga0315539_1235944	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	512	Open in IMG/M
3300031653\|Ga0315550_1057010	Not Available	1797	Open in IMG/M
3300031653\|Ga0315550_1067772	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1603	Open in IMG/M
3300031653\|Ga0315550_1124079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1065	Open in IMG/M
3300031654\|Ga0315549_1222473	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	718	Open in IMG/M
3300031654\|Ga0315549_1234351	Not Available	689	Open in IMG/M
3300031657\|Ga0307991_1010144	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	5224	Open in IMG/M
3300031669\|Ga0307375_10462491	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	772	Open in IMG/M
3300031698\|Ga0315537_1165562	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300031698\|Ga0315537_1363503	Not Available	550	Open in IMG/M
3300032029\|Ga0315546_1075579	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	880	Open in IMG/M
3300032029\|Ga0315546_1107922	Not Available	667	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.04%
Terrestrial	Environmental → Terrestrial	0.96%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	79.81%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	15.38%
Sediment	Environmental → Aquatic → Sediment	2.88%
Freshwater	Environmental → Aquatic → Freshwater	0.96%
Soil	Environmental → Terrestrial → Soil	0.96%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	37.50%
Oceanic	Environmental → Aquatic → Marine → Oceanic	22.12%
Coastal	Environmental → Aquatic → Marine → Coastal	18.27%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	10.58%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.96%
Clay	Environmental → Terrestrial → Soil → Clay	0.96%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	37.50%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	22.12%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	18.27%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	7.69%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	4.81%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.96%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	25.96%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	18.27%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	13.46%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	11.54%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	8.65%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	7.69%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	4.81%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.92%
Marine Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment	1.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.96%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	0.96%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.96%
Lake Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Lake Water	0.96%
Marine Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001753	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-3-24_28	Environmental	Open in IMG/M
3300005346	Saline sediment microbial community from Etoliko Lagoon, Greece	Environmental	Open in IMG/M
3300005613	Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment	Environmental	Open in IMG/M
3300005820	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf, PM2	Environmental	Open in IMG/M
3300005821	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf, PM1	Environmental	Open in IMG/M
3300005822	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf, MM1	Environmental	Open in IMG/M
3300005823	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf, MM2	Environmental	Open in IMG/M
3300005918	Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC	Environmental	Open in IMG/M
3300005936	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKS	Environmental	Open in IMG/M
3300007900	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf. Combined Assembly of MM1PM1	Environmental	Open in IMG/M
3300008517	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 175 cmbsf. Combined Assembly of Gp0128389 and Gp0131431 MM4PM4	Environmental	Open in IMG/M
3300009135	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 382 cmbsf	Environmental	Open in IMG/M
3300009136	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsf	Environmental	Open in IMG/M
3300009529	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG	Environmental	Open in IMG/M
3300010993	ECM15MPS05_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)	Environmental	Open in IMG/M
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental	Open in IMG/M
3300017971	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaG	Environmental	Open in IMG/M
3300017989	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaG	Environmental	Open in IMG/M
3300018080	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG	Environmental	Open in IMG/M
3300022846	Saline water microbial communities from Ace Lake, Antarctica - #1452	Environmental	Open in IMG/M
3300027888	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)	Environmental	Open in IMG/M
3300027893	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54 (SPAdes)	Environmental	Open in IMG/M
3300027901	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 (SPAdes)	Environmental	Open in IMG/M
3300031255	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-70	Environmental	Open in IMG/M
3300031257	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-80	Environmental	Open in IMG/M
3300031275	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-90	Environmental	Open in IMG/M
3300031281	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-40	Environmental	Open in IMG/M
3300031358	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-110	Environmental	Open in IMG/M
3300031360	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-40	Environmental	Open in IMG/M
3300031379	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-220	Environmental	Open in IMG/M
3300031537	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-30	Environmental	Open in IMG/M
3300031551	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-110	Environmental	Open in IMG/M
3300031553	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-240	Environmental	Open in IMG/M
3300031554	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-130	Environmental	Open in IMG/M
3300031586	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-190	Environmental	Open in IMG/M
3300031620	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-70	Environmental	Open in IMG/M
3300031624	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-10	Environmental	Open in IMG/M
3300031645	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #129	Environmental	Open in IMG/M
3300031650	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-150	Environmental	Open in IMG/M
3300031653	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-90	Environmental	Open in IMG/M
3300031654	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-200	Environmental	Open in IMG/M
3300031657	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #131	Environmental	Open in IMG/M
3300031669	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1	Environmental	Open in IMG/M
3300031698	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-70	Environmental	Open in IMG/M
3300032029	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-170	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI2171J19970_100335162	3300001753	Marine Sediment	MLSVKIAKLFEEHVYVFFCQMPKTKARSGAFQKGADVRSNRRQGHVALHHFETAHYCE*
JGI2171J19970_100460594	3300001753	Marine Sediment	MPKIKAGSWAFQKGADLPAILQAGVRSNRRQGHVSLHHFETAHSCECMGHYKKRHTHAPFMNPKMGIMSE*
JGI2171J19970_100714151	3300001753	Marine Sediment	MYVFFCQMPKTKARSGAFQKDAIRQAHGPEQSRRTAVWSNRRQGHGALHHFETAHYYECIGH
JGI2171J19970_102306101	3300001753	Marine Sediment	HVYVFFCQMPKTKARSGAFQKGADVRSNRRQGHVALHHFETAHSCACIGHYKKRHTHAPFMNLKMGIMRE*
Ga0074242_121477512	3300005346	Saline Water And Sediment	KTRARSGSFQKGADVRSTRRQGHGALHHFEMTHYYECIGHYKKRHTHAP*
Ga0074649_10007144	3300005613	Saline Water And Sediment	MYVFFCQIPKTKARSGAFQKGADVRSNRRQGQVALHHFETAHYCEFIGHYKKRHTHAPQTVWRF*
Ga0074649_100204314	3300005613	Saline Water And Sediment	MPGGCEEHVYVFFCQMPKTRARSGSFQKGADARSNRRQGHGALHHFETTHYCECIRHYKKRHTHAPFMNPKMGIMSEEKDFLREH*
Ga0074649_100398615	3300005613	Saline Water And Sediment	MPKTKARSGSFQKGADARSNRRQGRVALHHFETAHYCEFIGHYKKRHTHAPFMNPKMGIMSKEKDFLREHQK*
Ga0074649_10055626	3300005613	Saline Water And Sediment	MYVFFCQMPKTRARSGSFQKGADVRSTRRQGHGALHDFEMTHYYECIGHYKKRYTHAPSHDLRLSFFGY*
Ga0074649_10394733	3300005613	Saline Water And Sediment	VIHKMLSVKIAKLFEEHVHVFFCQMPKTKARSGAFQKGADVLSNRRQGHGALH
Ga0074649_10553861	3300005613	Saline Water And Sediment	QMPKTKARSGAFQKGADVRSNRRQGHVALHHFETTHYCECIGHYKKRHTHAPQTVWRL*
Ga0074649_11383982	3300005613	Saline Water And Sediment	MYVFFCQMPKTKARSGAFQKGADVWRIRRQGHGALHHFETAHSCEC
Ga0078747_1071371	3300005820	Marine Sediment	MPKTKACSGAFQKGADVRSNRRQGHVALHHFETAHSYECIGHYKKRHT
Ga0078746_10002048	3300005821	Marine Sediment	MPKTKTRSGAFQKGADVLSNRRQGHIALHHFETAHYYEFIGHYKKRHTHAPQIVWRFLSARGGLTLSIV*
Ga0078746_10132162	3300005821	Marine Sediment	MYVFFCQMPKTKARSGAFQKGAYVRSNRRQGHVALHHFETTHYYEFIGHY
Ga0078746_10595323	3300005821	Marine Sediment	MLSDKIAKLFEEHVYVFFCQMPKTKARSGPFQKGAYVRSNRRQGHVALHHFETAHYCEFIGHYKK
Ga0078744_10054624	3300005822	Marine Sediment	VYVFFCQMPKTKTRSGAFQKGADVLSNRRQGHIALHHFETAHYYEFIGHYKKRHTHAPQIVWRFLSARGGLTLSIV*
Ga0078744_10056583	3300005822	Marine Sediment	MPKTKACSGAFQKGADVWRTRRQGHGALHHFETAHYCECIG
Ga0078744_10133844	3300005822	Marine Sediment	MLSVKIAKLFEEHVYVFFCQMPKTKVRSRPFQKGADLPAIRQAGVRSNRRQGHGALHHFETPITVNV*
Ga0078744_10136992	3300005822	Marine Sediment	VYVFFYQMPRTKARSGVFEKGAYVRSNRRQGHVALHHFETAHYCEFIGHYKKRHTHAPQTV*
Ga0078744_10160031	3300005822	Marine Sediment	MYVFFCQMPKTKARSGPFQKGADVRSNRRQGHGALHHFETAHYCECIGHYKKRHTH
Ga0078744_10742362	3300005822	Marine Sediment	MLSITIAKLCEEHVYVFFCQMPKTKASSGAFQKGADVGSNRRQGHVALHHFETAHSCECIGHYKKRHT
Ga0078744_10978322	3300005822	Marine Sediment	MYVFFCQMPKTKTRSGTFQKGADARSNRRQGHGALHHFETAHYCECIGHYKKRHTHAPHI
Ga0078745_10855561	3300005823	Marine Sediment	MPKTKARSGAFQKGAYLPAIRQAGVRSNRRQGHVALHYFKTAHSCECIGHYKKRHTHAPVSYTHLTLPTSD
Ga0075116_100373101	3300005918	Saline Lake	IKARSGPFQKGADVRSNRRQGHVALHHFETAHYCECIGHYKKRHTHAPL*
Ga0075124_102796421	3300005936	Lake Water	VYVFFCQMPKIKARSGLFQKGADVRSNRRQGHVALHHFETAHYCECI
Ga0111031_10038834	3300007900	Marine Sediment	VYVFFCQMPKTRARSGAFQKGADVRSNRRQGHGALHHFETAHYCECIGHYKKRHTHAP
Ga0111031_103465910	3300007900	Marine Sediment	MPKTKARSGAFQKGADVWRTRRQGHGALHHFETAHYCECIG
Ga0111031_10597082	3300007900	Marine Sediment	MLSVKIAKLFEEHMHVFFCQMPKTKARSGLFQKGAYLPAIRQAGVRSNRRQGHVALHHFETA
Ga0111031_10648811	3300007900	Marine Sediment	MPKTKARSGAFQKGAGVRSNRRQGHGALHHFETAHYYECIGHYKKRHTHAPQ
Ga0111031_10827372	3300007900	Marine Sediment	MPKTKARSGAFQKGANVGNNGRQGHVALHHFETAHYCECVGHYKKRHTHAPQN
Ga0111031_11255451	3300007900	Marine Sediment	PEKEHVYVFFCQMPKTKARSGAFQKGAYVRSNRRQGHGALHHFETAHSCECIGHYKKRHTRAPSLAP*
Ga0111034_11254155	3300008517	Marine Sediment	MLSVKIAKLFEEHVYVFFCQMPKTKVRSGAFQKGADLPAIRQAGVRSNRRQGHGALHHFETPITVNV*
Ga0118736_100102201	3300009135	Marine Sediment	MPKTKTRSGAFQKGADVLSNRRQGHIALHHFETAHYYEFIGHYKKRHTH
Ga0118736_102725752	3300009135	Marine Sediment	EEHVYVFFCQMPKTKARSGPFQKGAYVRSNRRQGHVALHHFETDHYCEFIGHYKKRHTHAPQTVWRF*
Ga0118735_100108251	3300009136	Marine Sediment	PEKEHVYVFFCQMPKTKARSGAFQKGAYVRSNRRQGHVALHHFETAHYCECIGHYKKRHTHAPHTVWRL*
Ga0114919_107264693	3300009529	Deep Subsurface	MPKTKARSGAFQKGADVRSNRRQVHGALHHFETAHYCEFIGHYKKRHTHAPFM
Ga0139329_1092141	3300010993	Sediment	SNRRQGHGALHHFETAHYYECIGHYKKRHTYAPSQHLRPSFWNLAKHFMNPKMGIMSE*
Ga0114922_101968643	3300011118	Deep Subsurface	MLSVKIAKLFEEHVCVFFCQMPKTKARSRPFQKGADLPAIRQAGVRSNRRQGNVALHHFETPITVNV*
Ga0114922_102463772	3300011118	Deep Subsurface	MPKTNARSGAFQKGADVWSNRRQGHGALHHFETAHSCEYIGHYKKRHTHAPLQVLGSNFWN*
Ga0114922_102643352	3300011118	Deep Subsurface	MPKTKARLGAFQKGADLPAIRQAGVRSNRRQGHGALHHFETAHYFECIGHYKKRHTHAPHIVW*
Ga0114922_102692093	3300011118	Deep Subsurface	VYVFFCQMPKTKARLGAFQKGAYVRSNRRQGHGALHHFETAHSCECIGHYKKRHTYAPHIVW*
Ga0114922_103777953	3300011118	Deep Subsurface	VYVFFCQMPKTKARSGAFQKGAYLPAIWQAGVWSNRRQGHGALHHFETAHYYECIGHDKKRHTHAP*
Ga0114922_104373661	3300011118	Deep Subsurface	MLSVTIAKLFEEHMHVFFCQMPKTKARSGLFQKGAYLPAIRQAGVRSNRRQGHVALHHFETAHYCECIGHYKKR
Ga0114922_104518101	3300011118	Deep Subsurface	MPKTKTRSGAFQKGADVLSNRRQGHIALHHFETAHYYEFIGHYKKRHTHAS
Ga0114922_108668882	3300011118	Deep Subsurface	MYVFFCQMPETKARSGVFQKGADVRSNRRQGHGALHHFETAHDYECIGHYKKRHTYAPHTVWRF*
Ga0114922_108760852	3300011118	Deep Subsurface	MLSVKIAKLFEEHVYVFFCQMPKTKTRSRPFQKGAYLPAIRQAGVRSNRRQGHGALHHFETPITVNV*
Ga0114922_108898081	3300011118	Deep Subsurface	LRAILAAFGKKIHKMLRVKIAKLFEEHVYVFFCQMPKTKARSGAFQKGAYVRSNRRQGHG
Ga0114922_110089172	3300011118	Deep Subsurface	GAFQKGADLPAIRQAGVRSNRRQGHVALHHFETAHYYEFIGHYKKRHTRAPQIVWRF*
Ga0114922_110881921	3300011118	Deep Subsurface	VYVFFCQMPKTKTRSGAFQKGADVLSNKRQGHVALHHFETAHYYEFIGHYKKRHTHAPQIVWRFLSARGGLTLSIV*
Ga0114922_114126161	3300011118	Deep Subsurface	MPTTKACSGAFQKGADVRSNRRQGYGALHHFETAHYFECIGHYKKRHTHAPQTVWLFLSA
Ga0180438_1000908815	3300017971	Hypersaline Lake Sediment	VYVFFCQMPKTKARSGAFQKGAYVGSNSRQGHGALHHFETAHSYDCIGHYKKRHTHAP
Ga0180438_103928812	3300017971	Hypersaline Lake Sediment	MSLFCQMPKTKARSGPFQKGADVWRIRRQGHGALHHFETAHYCEYIGHYKKRH
Ga0180432_111588551	3300017989	Hypersaline Lake Sediment	MPKTKARSGAFQKGAYVRSNRRQGHGALHHFETAHSCECIGHYKKRHT
Ga0180433_106653771	3300018080	Hypersaline Lake Sediment	MPTTKARSGAFQNGADVRSNRQQGHGALHHFETAHYCECIGHYKKRPTHAP
Ga0180433_107619271	3300018080	Hypersaline Lake Sediment	MYVFFCQMPTTKARSEAFQKGAIRQAHGPEQSRRTYVRSNRRQGHGALHHFE
Ga0222699_10175971	3300022846	Saline Water	MPKTKARSGVFQKGEDVRSNRRQGHVAFHHFETPHYCECIGHYKKRHTY
Ga0209635_102998491	3300027888	Marine Sediment	MPGEFEEHMYVFFCQMPKTKARSGAFQKGAIRQAHGPEQSRRTDVWSNRRQGHGALHHFETAHYYECIG
Ga0209635_105862841	3300027888	Marine Sediment	AKLFEEHVYVFFCQMPKTKARSGAFQKGADVRSNRRQGHVALHHFETAHYCACIGHYKKRHTHAPFMNPKMGIMSKEKDFLRENQ
Ga0209636_105822981	3300027893	Marine Sediment	MPKTKARSGAFQKGAYARSNRRQGHVALHHFETAHYCECIGHYKKRH
Ga0209427_102114621	3300027901	Marine Sediment	KTKVLSGPFQKGADVRSNRRQGHVALHHFETAHDCECIGHYKKRHTHAPSQALMPSFWN
Ga0209427_102925042	3300027901	Marine Sediment	MLSVKITKLFVEYMYVFFCQMPTTKARSWAFQKGADVRSNRRQGHGALHHFETAHSC
Ga0315554_11823082	3300031255	Salt Marsh Sediment	LSNAQKKARSGAFQKGANLPAIWQAGVRSNRRQGQVALHHFETAHYCEFIGHYKKRHRHAPETVWRF
Ga0315555_11099061	3300031257	Salt Marsh Sediment	LSNAQKKARSGAFQKGANLPAIWQAGVRSNRRQGQVALHHFETAHYCEFIGHYKKRHTHAPFMNPNMGIMRE
Ga0307437_10917191	3300031275	Salt Marsh	LSNAQKKARSGAFQKGANLPAIWQAGVRSNRRQGQVALHHFETAHYCEFIGHYKKRH
Ga0307437_10973061	3300031275	Salt Marsh	FFCQMPKTKARSGAFQKGADVRSNRRQGHVALHHFETAHYCEFIGHYKKRHTHAPQTVWR
Ga0307437_11091002	3300031275	Salt Marsh	MPKTKARSGAFQKGADVRSNRRQGHGALHHFETAHYCECIGHYKKRHTHAPFMNPKMGIMSKQKDFLL
Ga0307437_12129621	3300031275	Salt Marsh	MLSVKITKLFEEHVYVFFCQMPKTKARLGAFQKGAYVWSNIRQGHGVFHHFETAHYCECI
Ga0307420_10061135	3300031281	Salt Marsh	MYVFFCQMPKTKARSGAFQKGADVRSNRRQGHVALHHFETAHSCEFIGHYKKRHTYAPKTVRRF
Ga0307420_10073223	3300031281	Salt Marsh	MLSVKNPKLLEEHVHVFFCQMPKTKARSGAFQKGAYVRSNRRQGHVALHHFETAHYCECIGHYKKRHAHAPFMNPKMGIMSE
Ga0307438_11060491	3300031358	Salt Marsh	ARSGVFQKGADVWSNRRQGHVSLHHFETTHSCECIGHYKKRHPHAPYTMLRFLSA
Ga0307438_11654181	3300031358	Salt Marsh	MLSVKIAKLFEKHMYVFFCQMPKTKARSGAFQKGAHIRSNRRQGQVALHHFETAHYCEFIGHYNK
Ga0307444_10152754	3300031360	Salt Marsh	MYVFFCQMPKTKACSGAFQKGADVRSNRRQGHGALHHFETAHSCECVGHYKKRHTHVPHTVLRFLSASGRLTLNIL
Ga0307444_11694462	3300031360	Salt Marsh	KTKARSGAFQKGADVRSNRRQGHVALHHFETAHYCECIGHYKKRHTHAPQTVWRF
Ga0307434_11367182	3300031379	Salt Marsh	EHVYVFFCQMPKTKARSGAFQKGAHVRSNRRQGQVALHHFETAHYCEFIGHYKKRHTHAPSQDLSPSFWN
Ga0307419_101146521	3300031537	Salt Marsh	KLLEEHVHVFFCQMPKTKARSGAFQKGAYVRSNRRQGHVALHHFETAHYCECIGHYKKRHAHAPFMNPKMGIMSE
Ga0315548_10834972	3300031551	Salt Marsh Sediment	MYVFFCQMPKTKARSGAFQKGADVRSNRRQGHVALHHFETAHYSECIGHY
Ga0315548_10976723	3300031551	Salt Marsh Sediment	MLSVKIAKLFEEHVYVFFCQMPKTKARSGPFQKGADVRSNRRQGHVALHHFETAHYCEFIGHYKK
Ga0315548_11671312	3300031551	Salt Marsh Sediment	KACSGAFQKGAYLPAIWQAGVWSNRRQGQVALHHFETAHYCEFIGHYKKRHTHAP
Ga0315548_12135021	3300031551	Salt Marsh Sediment	KACSGPFQKGAYVWSNRRQGHVALHHFETARSCECIGHYKKRHTYAPHIRPA
Ga0315547_10982162	3300031553	Salt Marsh Sediment	VYVFFCQMPKTKARSGPFQKGADVRSNRRQEHVALHHFETAHSCECIGHYKKRHTHAPFMNPKMGIIN
Ga0315544_10253114	3300031554	Salt Marsh Sediment	MPKTKARSGAFQKGADVWSNKRQGHVALHHFETTHYYECIGHYKKKTYIYSSSNLAIVTLSIS
Ga0315544_10435251	3300031554	Salt Marsh Sediment	KTKARSGAFQKGADVRSNRRQGHVALHHFETAHYCECIGH
Ga0315544_10443721	3300031554	Salt Marsh Sediment	MPSVKIAKLFEEHVYVFFCQMPKTKARSGAFQKGAYVRSNRRQGHVALHHFETAHYCEFIGHYKKRHTHAPFMNPKMGIMSE
Ga0315544_10586291	3300031554	Salt Marsh Sediment	MLSVKIAKLFEEHVYVFFCQMPKTKARSGAFQKGADVRSNRRQGHVALHHFETAHSCECIGHYKKRHTHAP
Ga0315544_11729221	3300031554	Salt Marsh Sediment	MLSVKIAKLFKEHVYVFFCQMPKTKARSGAFQKGAYLPAIRQAGVRNNRRQGYGALHH
Ga0315541_11008791	3300031586	Salt Marsh Sediment	MLSVKITKLFEEHVYVFFCQMPKTKARLGAFQKGAYVWSNIRQGHGVFHHFETAHYCECIGHYKKRHIHAP
Ga0315552_10881472	3300031620	Salt Marsh Sediment	MYVFFCQMPKTKARSGAFQKGADVRSNRRQGHGALHHFETAHSCEYIGHYKKRHTH
Ga0315545_11158801	3300031624	Salt Marsh Sediment	MPKTKARSGAFQKGADVQSNRRQGHVALHHFETAHYWEFIGH
Ga0307990_12809652	3300031645	Marine	VYVFFCQMPKTNARSGAFQKGADVRSNRRQGHVALHHFETAHYCECIGHYKKRHTHAPHI
Ga0315539_10910592	3300031650	Salt Marsh Sediment	LVLSNAQKKARSGAFQKGANLPAIWQAGVRSNRRQGQVALHHFETAHYCEFIGHYKKRHRHAPETVWRF
Ga0315539_11347111	3300031650	Salt Marsh Sediment	FFCQMPKTKARSGAFQKGADVRSNRRQGHVALHHFETAHSYECIGHYKKRHTHAP
Ga0315539_12359441	3300031650	Salt Marsh Sediment	YVFFCQMPKTKARSGAFQKGAYVRSNKRQGHVSLHHFETAHYCEFIGHYKKRHTHAPQTV
Ga0315550_10570101	3300031653	Salt Marsh Sediment	EKEHVYVFFCQMPKTKARSGAFQKGAYVRSNRRQGHVALHHFETAHYCECIGHYKKRHAHAPFMNPKMGIMSE
Ga0315550_10677722	3300031653	Salt Marsh Sediment	MPKTKARSGAFQKGADVWSNKRQGHVALHHFETTHYYECIGHYKKRHTFAPQAIWRL
Ga0315550_11240793	3300031653	Salt Marsh Sediment	MYVFFCQMPKTKARSGAFQKGADVRSNRRQGHGALHHFETAHYCECMGHYKKRHTYAPQTVWRF
Ga0315549_12224733	3300031654	Salt Marsh Sediment	MPKTKARSGPFQKGADVRSNRRQGHVTLHHFETAHYCECIGHYKKRHIYAPS
Ga0315549_12343511	3300031654	Salt Marsh Sediment	VYAFFCQMPKTKARSGAFQKGAYVRSNRRQGHVALHHFETAHYCECIGHYKKRHTHAP
Ga0307991_10101446	3300031657	Marine	MYVFFCQMPKTKARSGAFQKGARVRSNRKQGHVALHHFETAHYYECIGHYKKRHTYAP
Ga0307375_104624912	3300031669	Soil	MYVFFCQMPKTEARSGAFQKGADVRSNRRQGHIALHHFETTHYCECIGHYKKR
Ga0315537_11655621	3300031698	Salt Marsh Sediment	MPKTKARSGAFQKGADVQSNRRQGHVALHHFETAHYWEFIGHYKKRHTHAPFMNPKMGSMSKQKDFLL
Ga0315537_13635032	3300031698	Salt Marsh Sediment	MPKTKARSGAFQKGADVWSNKRQGHVALHHFETTHYYECIGHYKKRHTFTPQAIWRL
Ga0315546_10755792	3300032029	Salt Marsh Sediment	MLSVKIAKLFEEHVYVFFCQMPKTKARSGAFQKGAYVRSNRRQGHVALYHFETAHYCERIGHYKKRHTHA
Ga0315546_11079221	3300032029	Salt Marsh Sediment	MPKIKARSGAFQKGADLPAIRQAGVRSNRRQGHVALHHFETAHYCEFIGDYKKRHTYAPQTVWRF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096630

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences