Metagenome / Metatranscriptome Family F096513

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096513
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	45 residues
Representative Sequence	MVEPGLVTLAKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDV
Number of Associated Samples	74
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	22.33 %
% of genes near scaffold ends (potentially truncated)	25.96 %
% of genes from short scaffolds (< 2000 bps)	78.85 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.462 % of family members)
Environment Ontology (ENVO)	Unclassified (33.654 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.462 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.25% β-sheet: 0.00% Coil/Unstructured: 65.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00072	Response_reg	34.62
PF13180	PDZ_2	7.69
PF00441	Acyl-CoA_dh_1	7.69
PF13620	CarboxypepD_reg	3.85
PF02771	Acyl-CoA_dh_N	2.88
PF10459	Peptidase_S46	0.96
PF01381	HTH_3	0.96
PF02770	Acyl-CoA_dh_M	0.96
PF01264	Chorismate_synt	0.96
PF13193	AMP-binding_C	0.96
PF08281	Sigma70_r4_2	0.96
PF04264	YceI	0.96
PF13485	Peptidase_MA_2	0.96
PF00150	Cellulase	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	11.54
COG0082	Chorismate synthase	Amino acid transport and metabolism [E]	0.96
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	0.96
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	0.96
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.42 %
Unclassified	root	N/A	10.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.42 %
Unclassified	root	N/A	10.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.50 %
Unclassified	root	N/A	10.58 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.92 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	75.96 %
Unclassified	root	N/A	10.58 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.96 %
Amoebozoa	clade	All Organisms → cellular organisms → Eukaryota → Amoebozoa	0.96 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.96 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	62.50 %
Unclassified	root	N/A	10.58 %
Evosea	phylum	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %
Fungi	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	0.96 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	62.50 %
Unclassified	root	N/A	10.58 %
Dikarya	subkingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	0.96 %
Eumycetozoa	class	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Name	Rank	Taxonomy	Distribution
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	54.81 %
Unclassified	root	N/A	10.58 %
Dictyostelia	clade	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia	0.96 %
Ascomycota	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Myxococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales	50.96 %
Unclassified	root	N/A	10.58 %
Acytosteliales	order	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Acytosteliales	0.96 %
Taphrinomycotina	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → Taphrinomycotina	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Name	Rank	Taxonomy	Distribution
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	50.96 %
Unclassified	root	N/A	10.58 %
Acytosteliaceae	family	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Acytosteliales → Acytosteliaceae	0.96 %
Taphrinomycotina incertae sedis	no rank	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → Taphrinomycotina → Taphrinomycotina incertae sedis	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Name	Rank	Taxonomy	Distribution
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	50.96 %
Unclassified	root	N/A	10.58 %
Heterostelium	genus	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Acytosteliales → Acytosteliaceae → Heterostelium	0.96 %
Saitoella	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → Taphrinomycotina → Taphrinomycotina incertae sedis → Saitoella	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Name	Rank	Taxonomy	Distribution
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	50.96 %
Unclassified	root	N/A	10.58 %
Heterostelium album	species	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Acytosteliales → Acytosteliaceae → Heterostelium → Heterostelium album	0.96 %
Saitoella complicata	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → Taphrinomycotina → Taphrinomycotina incertae sedis → Saitoella → Saitoella complicata	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Name	Rank	Taxonomy	Distribution
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	50.96 %
Unclassified	root	N/A	10.58 %
Saitoella complicata NRRL Y-17804	strain	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → Taphrinomycotina → Taphrinomycotina incertae sedis → Saitoella → Saitoella complicata → Saitoella complicata NRRL Y-17804	0.96 %
Heterostelium album PN500	strain	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Acytosteliales → Acytosteliaceae → Heterostelium → Heterostelium album → Heterostelium album PN500	0.96 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100667107	All Organisms → cellular organisms → Bacteria → Proteobacteria	2233	Open in IMG/M
3300000956\|JGI10216J12902_102856916	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1072	Open in IMG/M
3300000956\|JGI10216J12902_105165139	All Organisms → cellular organisms → Bacteria → Proteobacteria	1351	Open in IMG/M
3300000956\|JGI10216J12902_105745906	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1704	Open in IMG/M
3300001213\|JGIcombinedJ13530_103660154	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	855	Open in IMG/M
3300003320\|rootH2_10132834	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3598	Open in IMG/M
3300003322\|rootL2_10023267	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1864	Open in IMG/M
3300003323\|rootH1_10023020	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1123	Open in IMG/M
3300003323\|rootH1_10027013	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1835	Open in IMG/M
3300003323\|rootH1_10057013	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1998	Open in IMG/M
3300003323\|rootH1_10274425	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	2998	Open in IMG/M
3300004463\|Ga0063356_100086855	All Organisms → cellular organisms → Bacteria → Proteobacteria	3333	Open in IMG/M
3300005337\|Ga0070682_100010793	All Organisms → cellular organisms → Bacteria	5196	Open in IMG/M
3300005337\|Ga0070682_100259445	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1257	Open in IMG/M
3300005337\|Ga0070682_100388486	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1052	Open in IMG/M
3300005345\|Ga0070692_10575585	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	741	Open in IMG/M
3300005367\|Ga0070667_101393697	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	657	Open in IMG/M
3300005539\|Ga0068853_102312437	Not Available	521	Open in IMG/M
3300005577\|Ga0068857_101471543	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	663	Open in IMG/M
3300005617\|Ga0068859_100114342	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2763	Open in IMG/M
3300005719\|Ga0068861_102427804	Not Available	527	Open in IMG/M
3300005841\|Ga0068863_100157863	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2172	Open in IMG/M
3300005944\|Ga0066788_10013501	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300009093\|Ga0105240_10340540	All Organisms → cellular organisms → Bacteria → Proteobacteria	1704	Open in IMG/M
3300009100\|Ga0075418_11499287	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → Taphrinomycotina → Taphrinomycotina incertae sedis → Saitoella → Saitoella complicata → Saitoella complicata NRRL Y-17804	732	Open in IMG/M
3300009448\|Ga0114940_10134958	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300009551\|Ga0105238_11319805	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	748	Open in IMG/M
3300009695\|Ga0123337_10083347	All Organisms → cellular organisms → Bacteria	1996	Open in IMG/M
3300010038\|Ga0126315_11216584	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	512	Open in IMG/M
3300010397\|Ga0134124_10796448	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	944	Open in IMG/M
3300010397\|Ga0134124_12177157	Not Available	594	Open in IMG/M
3300012212\|Ga0150985_102431583	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	507	Open in IMG/M
3300012212\|Ga0150985_104317865	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	728	Open in IMG/M
3300012212\|Ga0150985_109428134	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	766	Open in IMG/M
3300012212\|Ga0150985_110171497	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	634	Open in IMG/M
3300012212\|Ga0150985_114628543	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	781	Open in IMG/M
3300012469\|Ga0150984_101111227	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	774	Open in IMG/M
3300012469\|Ga0150984_102203522	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	717	Open in IMG/M
3300012469\|Ga0150984_104041597	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1307	Open in IMG/M
3300012469\|Ga0150984_108407003	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300012469\|Ga0150984_109269589	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1303	Open in IMG/M
3300012469\|Ga0150984_111286905	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	551	Open in IMG/M
3300012469\|Ga0150984_112932145	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	653	Open in IMG/M
3300012891\|Ga0157305_10010882	All Organisms → cellular organisms → Bacteria	1452	Open in IMG/M
3300012900\|Ga0157292_10005380	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2605	Open in IMG/M
3300012900\|Ga0157292_10026905	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1420	Open in IMG/M
3300012929\|Ga0137404_10563887	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1021	Open in IMG/M
3300012930\|Ga0137407_10388502	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1291	Open in IMG/M
3300012943\|Ga0164241_10000315	All Organisms → cellular organisms → Bacteria → Proteobacteria	101885	Open in IMG/M
3300012943\|Ga0164241_10002595	All Organisms → cellular organisms → Bacteria → Proteobacteria	19198	Open in IMG/M
3300012985\|Ga0164308_10025917	All Organisms → cellular organisms → Bacteria → Proteobacteria	3503	Open in IMG/M
3300014325\|Ga0163163_11563094	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	721	Open in IMG/M
3300014969\|Ga0157376_10619854	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300015264\|Ga0137403_10434117	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1190	Open in IMG/M
3300018422\|Ga0190265_10830792	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1047	Open in IMG/M
3300018432\|Ga0190275_10094766	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	2629	Open in IMG/M
3300018890\|Ga0193595_1153644	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	622	Open in IMG/M
3300020034\|Ga0193753_10303503	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	685	Open in IMG/M
3300020203\|Ga0163148_10527739	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	534	Open in IMG/M
3300021181\|Ga0210388_10022033	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	5170	Open in IMG/M
3300021404\|Ga0210389_10179598	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1647	Open in IMG/M
3300021475\|Ga0210392_10228207	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1311	Open in IMG/M
(restricted) 3300021517\|Ga0224723_1039383	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1748	Open in IMG/M
3300022512\|Ga0242676_1052931	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	510	Open in IMG/M
3300022512\|Ga0242676_1056009	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	501	Open in IMG/M
3300022561\|Ga0212090_10156767	All Organisms → cellular organisms → Bacteria → Proteobacteria	2025	Open in IMG/M
3300022878\|Ga0247761_1001107	All Organisms → cellular organisms → Bacteria	4905	Open in IMG/M
3300022894\|Ga0247778_1117540	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300022904\|Ga0247769_1038016	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1326	Open in IMG/M
3300022908\|Ga0247779_1040847	All Organisms → cellular organisms → Bacteria → Proteobacteria	1231	Open in IMG/M
3300023265\|Ga0247780_1102782	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	750	Open in IMG/M
3300024288\|Ga0179589_10507409	Not Available	560	Open in IMG/M
3300025913\|Ga0207695_10237784	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1723	Open in IMG/M
3300025924\|Ga0207694_11221327	Not Available	636	Open in IMG/M
3300026088\|Ga0207641_10116872	All Organisms → cellular organisms → Bacteria → Proteobacteria	2374	Open in IMG/M
3300026088\|Ga0207641_10178028	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1946	Open in IMG/M
3300026116\|Ga0207674_11878316	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	565	Open in IMG/M
3300026215\|Ga0209849_1021046	Not Available	1102	Open in IMG/M
3300028652\|Ga0302166_10030172	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1090	Open in IMG/M
3300028741\|Ga0302256_10053251	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1036	Open in IMG/M
3300028802\|Ga0307503_10035531	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Acytosteliales → Acytosteliaceae → Heterostelium → Heterostelium album → Heterostelium album PN500	1791	Open in IMG/M
3300029989\|Ga0311365_10298647	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1391	Open in IMG/M
3300030294\|Ga0311349_10394043	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1310	Open in IMG/M
3300030294\|Ga0311349_11516941	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	622	Open in IMG/M
3300031231\|Ga0170824_126333425	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	706	Open in IMG/M
3300031231\|Ga0170824_127884410	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	659	Open in IMG/M
3300031232\|Ga0302323_100288216	All Organisms → cellular organisms → Bacteria → Proteobacteria	1698	Open in IMG/M
3300031232\|Ga0302323_101889162	Not Available	677	Open in IMG/M
3300031232\|Ga0302323_103475141	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	501	Open in IMG/M
3300031456\|Ga0307513_10133403	Not Available	2424	Open in IMG/M
3300031456\|Ga0307513_10240009	All Organisms → cellular organisms → Bacteria → Proteobacteria	1618	Open in IMG/M
3300031616\|Ga0307508_10002662	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	18732	Open in IMG/M
3300031616\|Ga0307508_10105721	All Organisms → cellular organisms → Bacteria	2413	Open in IMG/M
3300031616\|Ga0307508_10554049	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	748	Open in IMG/M
3300031726\|Ga0302321_101163868	Not Available	883	Open in IMG/M
3300031730\|Ga0307516_10010475	All Organisms → cellular organisms → Bacteria → Proteobacteria	10185	Open in IMG/M
3300031902\|Ga0302322_100430930	All Organisms → cellular organisms → Bacteria	1520	Open in IMG/M
3300031918\|Ga0311367_10231044	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1931	Open in IMG/M
3300032144\|Ga0315910_11437835	Not Available	538	Open in IMG/M
3300032157\|Ga0315912_10360832	All Organisms → cellular organisms → Bacteria → Proteobacteria	1148	Open in IMG/M
3300033417\|Ga0214471_10015137	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	6065	Open in IMG/M
3300033475\|Ga0310811_10324668	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1750	Open in IMG/M
3300033475\|Ga0310811_10877786	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	816	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.58%
Host-Associated	Host-Associated	39.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.81%
Plants	Host-Associated → Plants	39.42%
Aquatic	Environmental → Aquatic	5.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	38.46%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.46%
Peat	Environmental → Terrestrial → Peat	10.58%
Roots	Host-Associated → Plants → Roots	6.73%
Plant Litter	Environmental → Terrestrial → Plant Litter	5.77%
Rhizome	Host-Associated → Plants → Rhizome	5.77%
Freshwater	Environmental → Aquatic → Freshwater	4.81%
Marine	Environmental → Aquatic → Marine	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.58%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.69%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Roots → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.81%
Loam	Environmental → Terrestrial → Soil → Loam	3.85%
Lake	Environmental → Aquatic → Freshwater → Lake	1.92%
Ice	Environmental → Aquatic → Freshwater → Ice	1.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.96%
Sand	Environmental → Terrestrial → Soil → Sand	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.19%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.73%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	1.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.96%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.96%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.96%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.46%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	10.58%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	6.73%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	5.77%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	5.77%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.88%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.92%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.96%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300003322	Sugarcane root Sample L2	Host-Associated	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009448	Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Cold Creek Source	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009695	Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - frozenSSSS metaG	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018890	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, bundles v1	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020203	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP7.P2	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021517 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Balambano_FR2_MetaG	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022561	Borup_combined assembly	Environmental	Open in IMG/M
3300022878	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L111-311C-4	Environmental	Open in IMG/M
3300022894	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L049-202B-5	Environmental	Open in IMG/M
3300022904	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L166-409R-6	Environmental	Open in IMG/M
3300022908	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L221-509R-5	Environmental	Open in IMG/M
3300023169	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L081-202R-4	Environmental	Open in IMG/M
3300023265	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L079-202R-5	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026215	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 (SPAdes)	Environmental	Open in IMG/M
3300028652	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3	Environmental	Open in IMG/M
3300028741	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_4	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1006671072	3300000364	Soil	MVESGLVTLTKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDI*
JGI10216J12902_1028569162	3300000956	Soil	MVEPGLVTLAKIVGTLLLAMGIIPFLFLLSPGGDKNEPKDNFDDLV*
JGI10216J12902_1051651392	3300000956	Soil	MVEPGLVTLTKIVGTLLLAMGIIPFLFLLAPGGDRAEPKDNFDDLNN*
JGI10216J12902_1057459064	3300000956	Soil	MVEPGLVTLAKIVGTILLAMGVIPFLFLLSPGGDKSEPKENFDDLV*
JGIcombinedJ13530_1036601541	3300001213	Wetland	MVEPGLVTLAKIVGTLLLAMGVIPFLFLLSPGGDKSEPKDNFDDLV*
rootH2_101328343	3300003320	Sugarcane Root And Bulk Soil	MARAGYRPGAMVEPGLVTLAKIVGTLLLCMGIIPFTFLLAPGDTSEPEPSDTFDGD*
rootL2_100232673	3300003322	Sugarcane Root And Bulk Soil	MVEPGLVTLTKIVGTLLLAMGIIPFMFLLSSGGDKAEPKDNFDDLI*
rootH1_100230202	3300003323	Sugarcane Root And Bulk Soil	MVEPGLVTLTKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDV*
rootH1_100270132	3300003323	Sugarcane Root And Bulk Soil	MARAGYRPGAMVEPGIVTLAKIVGTLLLCMGIIPFTFLLSPGDTSEPDPSDTFDGD*
rootH1_100570132	3300003323	Sugarcane Root And Bulk Soil	MVEPGLVTLTKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDI*
rootH1_102744252	3300003323	Sugarcane Root And Bulk Soil	MVEPGLVTLAKIVGTLLVAMGVIPFLFLLSPGGDKSEPSDNFDDIN*
Ga0063356_1000868552	3300004463	Arabidopsis Thaliana Rhizosphere	MVEPGLVTLTKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDLNN*
Ga0070682_1000107931	3300005337	Corn Rhizosphere	MVEPGIVTLAKIVGTLLFCMGVVPFLFLLAPGDRKEPEVKDTFDGDVQ*
Ga0070682_1002594452	3300005337	Corn Rhizosphere	MVEPGLVTLAKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDI*
Ga0070682_1003884861	3300005337	Corn Rhizosphere	YRGDPMVEPGLVTLAKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDLV*
Ga0070692_105755852	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MVEPGLITLTKIVGTLLLAMGVIPFLFLLSSGGDKSEPKDNFDDI*
Ga0070667_1013936972	3300005367	Switchgrass Rhizosphere	MVRAMVEPGLVTLAKIVGTLLLAMGVIPFLFLLSPGGDKSEPKENFDDL*
Ga0068853_1023124372	3300005539	Corn Rhizosphere	MVEPGLVTLAKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDV*
Ga0068857_1014715431	3300005577	Corn Rhizosphere	MVEPGLVTLTKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDLN*
Ga0068859_1001143423	3300005617	Switchgrass Rhizosphere	MVEPGLVTLTKIVGTLLLAMGIIPFLFLLSSGGDKSEPKDNFDDV*
Ga0068861_1024278041	3300005719	Switchgrass Rhizosphere	MVEPGLVTLAKIIGTLLGAMAVVPFLFLLAPGDRSEPELKDTFD
Ga0068863_1001578633	3300005841	Switchgrass Rhizosphere	MVEPGIVTLAKIVGTLLVAMGIVPFLFLLAPGDRSEPDVKDTFDGDVQ*
Ga0066788_100135013	3300005944	Soil	MVESGFVTLTKIVGTLLLCMGIIPFLFLLAPGDRTEPEETFDGD*
Ga0105240_103405403	3300009093	Corn Rhizosphere	MVEPGLVTLAKIVGTLLLCMGIIPFTFLLSPGDTSEPDPSDTFDGD*
Ga0075418_114992872	3300009100	Populus Rhizosphere	MVEAGLLTLAKIVGTLLAAMGIIPLVFLMAPGDSSEPKDTFDEH*
Ga0114940_101349583	3300009448	Groundwater	MVEPGLVTLAKIVGTLLFAMGVVPFLFLLAPGDRSEPEVKDTFDGDVQ*
Ga0105238_113198052	3300009551	Corn Rhizosphere	MVEPGLVTLAKIVGTLLCAMGVIPFLFLLSPGGDKAEPKDNFDDLN*
Ga0123337_100833471	3300009695	Glacier Valley	MVEPGIVTLVKIVGTLLLAMGIVPFLFLLAPGDRSEPEVKDTFDGDVQ*
Ga0126315_112165841	3300010038	Serpentine Soil	MVEPGLVTLTKIVGTLLLAMGIIPFLFLLSPGGDKAEPKDNFDDI*
Ga0134124_107964481	3300010397	Terrestrial Soil	MVEPGLVTLAKIVGTLLLAMGIIPFMFLLSKGGDKSEPKDNFDDLI*
Ga0134124_121771571	3300010397	Terrestrial Soil	MVEPGIVTLAKIVGTLLFCMGVVPFLFLLAPGDRKEPDVKDTFDGDVQ*
Ga0150985_1024315831	3300012212	Avena Fatua Rhizosphere	PGLVTLAKIVGTLLLSMGIIPFLFLLTPGSDKSEPKDNFDDI*
Ga0150985_1043178651	3300012212	Avena Fatua Rhizosphere	PGLVTLAKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDLV*
Ga0150985_1094281341	3300012212	Avena Fatua Rhizosphere	GIVTLAKIVGTLLFAMSVVPFLFLLAPGDRSEPEVKDTFDGDVQ*
Ga0150985_1101714971	3300012212	Avena Fatua Rhizosphere	EHGLVTLTKIVGTLLLSMGIIPFLFLLSSGGDKSEPKDNFDDI*
Ga0150985_1146285431	3300012212	Avena Fatua Rhizosphere	GLVTLTKIVGTLLLAMGIIPFLFLLSSGGDKSEPKDNFDDI*
Ga0150984_1011112271	3300012469	Avena Fatua Rhizosphere	KIVGTLLLAMGIIPFMFLLSPGGDKSEPKDNFDDI*
Ga0150984_1022035222	3300012469	Avena Fatua Rhizosphere	PGLVTLAKIVGTLLVAMGIVPFLFLLAPGDRSEPEVKDTFDGDVQ*
Ga0150984_1040415971	3300012469	Avena Fatua Rhizosphere	EPGLVTLAKIVGTLLLAMGIIPFLFLLSSGGDRAEPKENFDDV*
Ga0150984_1084070031	3300012469	Avena Fatua Rhizosphere	PGLVTLTKIVGTLLLAMGIIPFMFLLSSGGDKAEPKDNFDDLV*
Ga0150984_1092695891	3300012469	Avena Fatua Rhizosphere	LAKIVGTLLLAMGVIPFLFLLSSGGDKSEPKDNFDDI*
Ga0150984_1112869051	3300012469	Avena Fatua Rhizosphere	PGLVTLAKIVGTLLVAMSVVPFLFLLAPGDRTEPETKDTFDGDVQ*
Ga0150984_1129321451	3300012469	Avena Fatua Rhizosphere	GIVTLAKIVGTLLVAMGIVPFLFLLAPGDRSEPDVKDTFDGDVQ*
Ga0157305_100108823	3300012891	Soil	MVEPGLVTLAKIIGTLLGAMAVVPFLFLLAPGDRSEPELKDTFDGDVQ*
Ga0157292_100053802	3300012900	Soil	MVEPGLVTLAKIVGTLLFAMSVVPFLFLLARGDRTEPDVKDTFDGDVQ*
Ga0157292_100269052	3300012900	Soil	MVEPGIVTLAKIVGTLLCAMSVVAVLFLLAPGDRSEPELKDTFDGDVQ*
Ga0137404_105638872	3300012929	Vadose Zone Soil	MVESGLITLTKIVGTLLLAMGVIPFLFLLSPGGDKSEPKDNFDDI*
Ga0137407_103885021	3300012930	Vadose Zone Soil	VESGLITLTKIVGTLLLAMGVIPFLFLLSPGGDKSEPKDNFDDI*
Ga0164241_1000031540	3300012943	Soil	MVEPGLVTLAKIVGTLLGAMGVIPFLFLLSSGGDKAEPKDNFEDLN*
Ga0164241_1000259513	3300012943	Soil	MVEPGLVTLAKIVGTLLLAMGVIPFLFLLSSGGDKSEPKDNFDDLV*
Ga0164308_100259175	3300012985	Soil	MVESGLITLTKIVGTILLAMGVIPFMFLLSKGGDKSEPKDNFDDLI*
Ga0163163_115630942	3300014325	Switchgrass Rhizosphere	MVEPGLVTLAKIVGTLLLAMGIIPFMFLLSSGGDKSEPKENFDDIN*
Ga0157376_106198543	3300014969	Miscanthus Rhizosphere	MVEPGLVTLAKIVGTLLFCMGVVPFLFLLAPGDRKEPEVKDTFDGDVQ*
Ga0137403_104341173	3300015264	Vadose Zone Soil	MVEPGLVTLTKIVGTLLLAMGIIPFMFLLSKGGDRS
Ga0190265_108307922	3300018422	Soil	MVEPGLVTLAKIVGTILLAMGIIPFIFMLSAGGDRAEPKENFDDLN
Ga0190275_100947662	3300018432	Soil	MVEPGLVTLAKIVGTLLLAMGIIPFLFLLSPGGDKNEPKDNFDDLV
Ga0193595_11536441	3300018890	Soil	MVEPGLVTLAKIVGTLLLGMGIIPFLFLLSPGGDKSEPK
Ga0193753_103035032	3300020034	Soil	MVESGLVTLTKIVGTLLLAMGIIPFMFLLSKDGDKSEPKDNFDDV
Ga0163148_105277391	3300020203	Freshwater Microbial Mat	LVTLAKIVGTLLIAMGIIPFLFLLSPGGDKSEPKDHFEDL
Ga0210388_100220333	3300021181	Soil	MVEPGIVTLAKIVGTLLFCAGVIPFIFLLVPGDRSEPTDTFDGD
Ga0210389_101795982	3300021404	Soil	MVEPGIVTLAKIVGTLLFCMGIIPFTFLLAPGEKSEPDAKDTFDGD
Ga0210392_102282073	3300021475	Soil	AKIVGTLLLCMGIIPFLFLLAPGDRTEPKDTFDGD
(restricted) Ga0224723_10393833	3300021517	Freshwater Sediment	MVEPGVVTLTKIVGTLLLAMGIIPFLFLLAPGSDSSEPKDTFDEH
Ga0242676_10529311	3300022512	Soil	PGIVTLAKIVGTLLFCAGVIPFIFLLVPGDRSEPTDTFDGD
Ga0242676_10560091	3300022512	Soil	GFVTLTKIVGTLLLCMGIIPFLFLLAPGDRTEPKDSFDGD
Ga0212090_101567673	3300022561	Glacier Valley	MVEPGIVTLVKIVGTLLLAMGIVPFLFLLAPGDRSEPEVKDTFDGDVQ
Ga0247761_10011075	3300022878	Plant Litter	MVEPGIVTLAKIVGTLLFAMGVVPFLFLLAPGDRKEPEVKDTFDGDVQ
Ga0247778_11175401	3300022894	Plant Litter	MVEPGLVTLAKIIGTLLGAMAVVPFLFLLAPGDRSEPELKDTFDGDVQ
Ga0247769_10380162	3300022904	Plant Litter	MVEPGIVTLAKIVGTLLFAMGVVPFLFLLAPGDRSEPEVKDTFDGDVQ
Ga0247779_10408472	3300022908	Plant Litter	MVEPGIVTLAKIVGTLLFCMGVVPFLFLLAPGDRKEPDVKDTFDGDVQ
Ga0247762_10052124	3300023169	Plant Litter	MVEPGLVTLAKIIGTLLFAMGTIPVLFLLAPGDSSEPTDRLDSEHKG
Ga0247780_11027822	3300023265	Plant Litter	VTLAKIVGTLLCAMSVVPFLFLLAPGDRSEPELKDTFDGDVQ
Ga0179589_105074092	3300024288	Vadose Zone Soil	MVESGLITLTKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDI
Ga0207695_102377842	3300025913	Corn Rhizosphere	MVEPGLVTLAKIVGTLLLCMGIIPFTFLLSPGDTSEPDPSDTFDGD
Ga0207694_112213272	3300025924	Corn Rhizosphere	MVEPGLVTLAKIVGTLLCAMGVIPFLFLLSPGGDKAEPKDNFDDLN
Ga0207641_101168723	3300026088	Switchgrass Rhizosphere	MVEPGIVTLAKIVGTLLVAMGIVPFLFLLAPGDRSEPDVKDTFDGDVQ
Ga0207641_101780282	3300026088	Switchgrass Rhizosphere	MVEPGLITLTKIVGTLLLAMGVIPFLFLLSSGGDKSEPKDNFDDI
Ga0207674_118783161	3300026116	Corn Rhizosphere	MVEPGLVTLTKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDLN
Ga0209849_10210462	3300026215	Soil	MVESGFVTLTKIVGTLLLCMGIIPFLFLLAPGDRTEPEETFDGD
Ga0302166_100301722	3300028652	Fen	MVEPGLVTLAKIVGTLLLGMSIVPFLFLLAPGDRTEPDAKDSFDGDV
Ga0302256_100532511	3300028741	Fen	AMVEPGLVTLAKIVGTLLLGMSIVPFLFLLAPGDRTEPDAKDSFDGDV
Ga0307503_100355312	3300028802	Soil	MVEHGLVTLTKIVGTLLLAMGVIPFLFLLSPGGDKSEPKDNFDDI
Ga0311365_102986472	3300029989	Fen	MVEPGLVTLAKIVGTLLLGMSIVPFLFLLAPGDRTVPDPKDTFDGDVL
Ga0311349_103940433	3300030294	Fen	VEPGIVTLAKIVGTLLCAMGVVPFLFLLAPGDRKEPEVKDTFDGDVQ
Ga0311349_115169412	3300030294	Fen	TLAKIVGTLLVAMGIVPFLFLLAPGDRSEPETKDTFDGDVQ
Ga0170824_1263334251	3300031231	Forest Soil	MVEPGLVTLAKIVGTLLLAMGVIPFLFLLSPGGDKAEPKDNFDDI
Ga0170824_1278844101	3300031231	Forest Soil	GLVTLAKIVGTLLLSMGIIPFVFLLAPGERKEPTDTFDGD
Ga0302323_1002882162	3300031232	Fen	MVEPGIVTLAKIVGTLLCAMGVVPFLFLLAPGDRKEPEVKDTFDGDVQ
Ga0302323_1018891622	3300031232	Fen	MVEPGLVTLAKIVGTLLFCMGVVPFLFLLAPGDRKEPEVKDTFDGDVQ
Ga0302323_1034751411	3300031232	Fen	MVEPGLVTLAKIVGTLLLAMGVIPFLFLLSPGGDKSEPKDNFEDLN
Ga0307513_101334032	3300031456	Ectomycorrhiza	MVEPGLVTLAKIVGTLLFAMGVVPFLFLLAPGDRKEPETKDTFDGDVQ
Ga0307513_102400092	3300031456	Ectomycorrhiza	MVEPGLVTLAKIVGTLLLAMGIVPFLFLLAPGDRTEPEVKDTFDGDVQ
Ga0307508_1000266215	3300031616	Ectomycorrhiza	MVEPGLVTLAKIVGTLLLAMGIIPFLFLLSPGGDKAEPKDNFDDI
Ga0307508_101057212	3300031616	Ectomycorrhiza	MVEPGFVTLAKIVGTLLLCMGIIPFLFLLAPGDRSEPNETFDGD
Ga0307508_105540492	3300031616	Ectomycorrhiza	MVEPGLVTLAKIVGTLLLAMGIIPFLFLLSPGGDKAEPK
Ga0302321_1011638682	3300031726	Fen	MPEPGLVTLVKIVGTLLAAMGVVPFLFLLAPGDRKEPNETFDGDVQ
Ga0307516_100104752	3300031730	Ectomycorrhiza	MVESGLVTLAKIVGTLLLAMGVIPFLFLLSPGGDRAEPKDNFDDI
Ga0302322_1004309303	3300031902	Fen	MPEPGLVTLVKIVGTLLAAMGVAFLFLLAPGDRKEPNETFDGDVQ
Ga0311367_102310441	3300031918	Fen	VGTLLLGMSIVPFLFLLAPGDRTEPDAKDSFDGDV
Ga0315910_114378352	3300032144	Soil	MVEPGLVTLAKIVGTLLLAMGIIPFLFLLSPGGDKTEPKENFDDI
Ga0315912_103608323	3300032157	Soil	MVEPGIVTLAKIVGTLLFAMGVIPFLFLAAPGDRTEPEVKDTFDGDVQ
Ga0214471_100151374	3300033417	Soil	VEAGLLTLAKIVGTLVISIGIVPLLFLLAPGDRGEPDDTFTPGV
Ga0310811_103246684	3300033475	Soil	MVEPGLVTLTKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDIN
Ga0310811_108777862	3300033475	Soil	MVESGLVTLTKIVGTLLLAMGIIPFLFLLSPGGDKSEPKDNFDDLN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters