Metagenome / Metatranscriptome Family F096493

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F096493
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	84 residues
Representative Sequence	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPASAAERRRAAGRKSLVEVFAPLRGLNLDFSRNQSTGRPVDLG
Number of Associated Samples	73
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.31 %
% of genes near scaffold ends (potentially truncated)	26.92 %
% of genes from short scaffolds (< 2000 bps)	83.65 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (65.385 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (17.308 % of family members)
Environment Ontology (ENVO)	Unclassified (30.769 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.84% β-sheet: 0.00% Coil/Unstructured: 63.16%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01850	PIN	21.15
PF04255	DUF433	5.77
PF01909	NTP_transf_2	1.92
PF13419	HAD_2	0.96
PF01527	HTH_Tnp_1	0.96
PF00723	Glyco_hydro_15	0.96
PF02913	FAD-oxidase_C	0.96
PF14339	DUF4394	0.96
PF08241	Methyltransf_11	0.96
PF12704	MacB_PCD	0.96
PF02518	HATPase_c	0.96
PF07676	PD40	0.96
PF02796	HTH_7	0.96
PF08681	DUF1778	0.96
PF02190	LON_substr_bdg	0.96
PF00464	SHMT	0.96
PF00654	Voltage_CLC	0.96
PF03695	UPF0149	0.96
PF00221	Lyase_aromatic	0.96
PF15919	HicB_lk_antitox	0.96
PF03050	DDE_Tnp_IS66	0.96
PF03129	HGTP_anticodon	0.96
PF14693	Ribosomal_TL5_C	0.96
PF05016	ParE_toxin	0.96
PF01555	N6_N4_Mtase	0.96
PF00106	adh_short	0.96
PF08238	Sel1	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	5.77
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.96
COG4453	Uncharacterized conserved protein, DUF1778 family	Function unknown [S]	0.96
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.96
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.96
COG3079	Uncharacterized conserved protein YgfB, UPF0149 family	Function unknown [S]	0.96
COG2986	Histidine ammonia-lyase	Amino acid transport and metabolism [E]	0.96
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.96
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.96
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	0.96
COG0442	Prolyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0441	Threonyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0423	Glycyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	0.96
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.96
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.96
COG0124	Histidyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.96
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.38 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.38 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.38 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	18.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.77 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.54 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.85 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	5.77 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.81 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	3.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.92 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.81 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	3.85 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	3.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.92 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	3.85 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	2.88 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	2.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.92 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	0.96 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	3.85 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	2.88 %
Granulicella rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	2.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.92 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.96 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004092\|Ga0062389_100315060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1640	Open in IMG/M
3300004635\|Ga0062388_100579585	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300005531\|Ga0070738_10293180	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300005563\|Ga0068855_101236171	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300005712\|Ga0070764_10588898	Not Available	677	Open in IMG/M
3300006052\|Ga0075029_100212048	Not Available	1213	Open in IMG/M
3300006162\|Ga0075030_101170811	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300009175\|Ga0073936_10086439	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	2636	Open in IMG/M
3300009500\|Ga0116229_11309045	Not Available	576	Open in IMG/M
3300009500\|Ga0116229_11309938	Not Available	576	Open in IMG/M
3300009686\|Ga0123338_10484083	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300009701\|Ga0116228_10387285	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300009709\|Ga0116227_10784400	Not Available	718	Open in IMG/M
3300009764\|Ga0116134_1007486	All Organisms → cellular organisms → Bacteria	4867	Open in IMG/M
3300009826\|Ga0123355_12021296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	533	Open in IMG/M
3300010371\|Ga0134125_10126328	All Organisms → cellular organisms → Bacteria	2847	Open in IMG/M
3300010396\|Ga0134126_10017144	All Organisms → cellular organisms → Bacteria	9180	Open in IMG/M
3300010399\|Ga0134127_10261184	All Organisms → cellular organisms → Bacteria	1647	Open in IMG/M
3300012469\|Ga0150984_121226114	Not Available	1090	Open in IMG/M
3300013104\|Ga0157370_11196583	Not Available	686	Open in IMG/M
3300014158\|Ga0181521_10004558	All Organisms → cellular organisms → Bacteria → Acidobacteria	15736	Open in IMG/M
3300014159\|Ga0181530_10186256	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300014159\|Ga0181530_10268553	Not Available	906	Open in IMG/M
3300014167\|Ga0181528_10161710	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300014167\|Ga0181528_10322907	Not Available	836	Open in IMG/M
3300014168\|Ga0181534_10436006	Not Available	731	Open in IMG/M
3300014199\|Ga0181535_10885206	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300014201\|Ga0181537_10377697	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300014499\|Ga0182012_10228031	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300014499\|Ga0182012_10711903	Not Available	640	Open in IMG/M
3300014501\|Ga0182024_10123124	All Organisms → cellular organisms → Bacteria → Proteobacteria	3704	Open in IMG/M
3300014501\|Ga0182024_10846191	Not Available	1109	Open in IMG/M
3300014501\|Ga0182024_10938634	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300014838\|Ga0182030_10586119	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300014838\|Ga0182030_10605658	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300014838\|Ga0182030_11376586	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300014839\|Ga0182027_10789462	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300017948\|Ga0187847_10054535	All Organisms → cellular organisms → Bacteria	2271	Open in IMG/M
3300017970\|Ga0187783_11416296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300018034\|Ga0187863_10118270	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	1482	Open in IMG/M
3300018038\|Ga0187855_10512081	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300018043\|Ga0187887_10377037	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300018043\|Ga0187887_10817986	Not Available	551	Open in IMG/M
3300018043\|Ga0187887_10853699	Not Available	539	Open in IMG/M
3300018046\|Ga0187851_10626710	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300019242\|Ga0181502_1440409	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300021181\|Ga0210388_10137854	All Organisms → cellular organisms → Bacteria → Acidobacteria	2113	Open in IMG/M
3300021181\|Ga0210388_10883323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	771	Open in IMG/M
3300021374\|Ga0213881_10112401	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300021374\|Ga0213881_10119511	Not Available	1146	Open in IMG/M
3300021384\|Ga0213876_10075581	All Organisms → cellular organisms → Bacteria	1779	Open in IMG/M
3300021384\|Ga0213876_10101712	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300021384\|Ga0213876_10269424	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300021384\|Ga0213876_10805200	Not Available	500	Open in IMG/M
3300021477\|Ga0210398_10283130	Not Available	1352	Open in IMG/M
3300022555\|Ga0212088_10121148	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2313	Open in IMG/M
3300024295\|Ga0224556_1063638	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300025949\|Ga0207667_11131842	Not Available	765	Open in IMG/M
3300028565\|Ga0302145_10068015	Not Available	1231	Open in IMG/M
3300028800\|Ga0265338_10612308	Not Available	758	Open in IMG/M
3300028866\|Ga0302278_10124618	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300028882\|Ga0302154_10010821	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	5908	Open in IMG/M
3300029817\|Ga0247275_1154778	Not Available	576	Open in IMG/M
3300029883\|Ga0311327_10623851	Not Available	645	Open in IMG/M
3300029911\|Ga0311361_10991005	Not Available	705	Open in IMG/M
3300029911\|Ga0311361_11123552	Not Available	639	Open in IMG/M
3300029913\|Ga0311362_10740402	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300029915\|Ga0311358_10891513	Not Available	625	Open in IMG/M
3300029952\|Ga0311346_10447283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1228	Open in IMG/M
3300029953\|Ga0311343_10762971	Not Available	796	Open in IMG/M
3300029954\|Ga0311331_10211622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2192	Open in IMG/M
3300030506\|Ga0302194_10387173	Not Available	546	Open in IMG/M
3300030518\|Ga0302275_10345704	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300030580\|Ga0311355_10759013	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300031090\|Ga0265760_10089643	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	961	Open in IMG/M
3300031234\|Ga0302325_10089571	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	5831	Open in IMG/M
3300031234\|Ga0302325_10163786	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3937	Open in IMG/M
3300031234\|Ga0302325_11941216	Not Available	730	Open in IMG/M
3300031236\|Ga0302324_100216229	All Organisms → cellular organisms → Bacteria	3037	Open in IMG/M
3300031236\|Ga0302324_101850814	All Organisms → cellular organisms → Bacteria → Acidobacteria	765	Open in IMG/M
3300031524\|Ga0302320_10053451	All Organisms → cellular organisms → Bacteria → Proteobacteria	7132	Open in IMG/M
3300031524\|Ga0302320_12050883	Not Available	534	Open in IMG/M
3300031525\|Ga0302326_11349859	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	967	Open in IMG/M
3300031525\|Ga0302326_12695688	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300031525\|Ga0302326_13524472	Not Available	519	Open in IMG/M
3300031595\|Ga0265313_10176133	Not Available	901	Open in IMG/M
3300031708\|Ga0310686_100004518	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300031708\|Ga0310686_101832838	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300031708\|Ga0310686_105772068	All Organisms → cellular organisms → Bacteria	11629	Open in IMG/M
3300031708\|Ga0310686_106496405	Not Available	795	Open in IMG/M
3300031708\|Ga0310686_110629662	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	4455	Open in IMG/M
3300031708\|Ga0310686_111304357	Not Available	639	Open in IMG/M
3300031708\|Ga0310686_117382338	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300031715\|Ga0307476_11019246	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300031788\|Ga0302319_10304186	All Organisms → cellular organisms → Bacteria → Acidobacteria	1867	Open in IMG/M
3300031788\|Ga0302319_11308939	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300031788\|Ga0302319_11396642	Not Available	631	Open in IMG/M
3300032515\|Ga0348332_14183246	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	1117	Open in IMG/M
3300032805\|Ga0335078_10402031	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1798	Open in IMG/M
3300032805\|Ga0335078_10876746	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300032892\|Ga0335081_11897773	Not Available	640	Open in IMG/M
3300033134\|Ga0335073_11003552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	864	Open in IMG/M
3300033561\|Ga0371490_1142089	Not Available	600	Open in IMG/M
3300033887\|Ga0334790_198526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	577	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.58%
Host-Associated	Host-Associated	14.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.50%
Aquatic	Environmental → Aquatic	23.08%
Plants	Host-Associated → Plants	13.46%
Arthropoda	Host-Associated → Arthropoda	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	30.77%
Peat	Environmental → Terrestrial → Peat	28.85%
Freshwater	Environmental → Aquatic → Freshwater	21.15%
Roots	Host-Associated → Plants → Roots	3.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.85%
Peat Moss	Host-Associated → Plants → Peat Moss	3.85%
Sediment	Environmental → Aquatic → Sediment	1.92%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	1.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.92%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.96%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	28.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	16.35%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.46%
Unclassified	Host-Associated → Plants → Roots → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	3.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.88%
Lake	Environmental → Aquatic → Freshwater → Lake	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	1.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Ice	Environmental → Aquatic → Freshwater → Ice	0.96%
Loam	Environmental → Terrestrial → Soil → Loam	0.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.96%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	28.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	17.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.50%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	8.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.85%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.96%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	17.31%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.69%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	4.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.85%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	3.85%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	3.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.88%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	1.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.92%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.92%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.96%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.96%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.96%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.96%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009686	Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - groundupSSSS metaG	Environmental	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300019242	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028565	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030506	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1	Environmental	Open in IMG/M
3300030518	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033561	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fraction	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062389_1003150602	3300004092	Bog Forest Soil	MNLEIRKPELVQRVNAHIQNGRFHDADEVLEKALDALEEKESVPMSPTERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLA*
Ga0062388_1005795853	3300004635	Bog Forest Soil	HIQNGRFHDADEVLEKALDALEEKESVPMSPTERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLA*
Ga0070738_102931802	3300005531	Surface Soil	MNIEIHKPELAQRMTAHIQAGHFHDADELIEKALDALEKKAPAPTSPAERRRAAGRRSLVELFEPLRGMDRDFSRNKSPARPVDLS*
Ga0068855_1012361712	3300005563	Corn Rhizosphere	MNLELHKPGLAARVQAHIQNGRFHDADEVIEKALDALEGKTTAPVPEQRRREAGRKSLVEVFAPLRGLNLDFGRDKSTGRPVDFS*
Ga0070764_105888982	3300005712	Soil	MNLEIHKPELVQRVNAHIQTGKFQDAEEVLEKALEALEEKDALEEKDGLEEKAPVPMLPAERRRAVGRKSLVELFAPLQGLNLDFSRNKSTGRPVDL*
Ga0075029_1002120483	3300006052	Watersheds	MNLEIHNPELVRRVRAHIRNGQFHDTDEVIEKALDALEEKTPVSVSSAAERRRAAGRKSLVEVFAPLRGLSLDFSRKQSATRPVDLG
Ga0075030_1011708111	3300006162	Watersheds	MNLEIHNPELVRRVNAHIRNGQFHDTDELIEKALDALEEKTPVPVSSAAERRRAAGRKSLVEVFAPLRGLSLDFSRKQSATRPVDLG*
Ga0073936_100864391	3300009175	Freshwater Lake Hypolimnion	VNLESVKPERARRVNAHIQSGHFHDADELLEKALDALEEEASAPGSSATERRRAAGRKSLVEVFAPLRGMNVDFERSQSASRQVVPG*
Ga0116229_113090452	3300009500	Host-Associated	GLTMNLEIHKPELVQRVNAHIRTGQFHDADELIEKALDALEEKTAAAASSAAERRRAAGRKSLVEVFAPLRGMNLDFSRNKFASRPIDLE*
Ga0116229_113099381	3300009500	Host-Associated	MNLEIHKPELVRRVNAQIQSGQFHDADELIEKALDALEGISPASAAERRRAAGRKSLVEVFAPLRGMNLDFSRN
Ga0123338_104840832	3300009686	Glacier Valley	NLEIHNPELVQRVNAQIQSGQFHDADELLEKALDALEEKTPTSVSPAVERRRAAGRKSLVEVFAPLRGMNLDYSRNQSASRPVDLTD*
Ga0116228_103872851	3300009701	Host-Associated	MNLEIHKPELLDRVHARIQSGHFQSMDDLIEKALDALDVQAAAAPPADAPPHKDIEELFAPLRGLNLDFARNPSTGRPIDL*
Ga0116227_107844001	3300009709	Host-Associated	NAQIQSGQFHDADELIEKALDALEGISPASAAERRRAAGRKSLVEVFAPLRGMNLDFSRNKSASRPVDLG*
Ga0116134_10074866	3300009764	Peatland	MNLEIRKPELVQRVNAQIQSRHLQDADELLQQALDALDEKSPAPASPAERRRAAGRKSLVEVFAPLRGLNLDFSRNKSTGRPVDLS*
Ga0123355_120212961	3300009826	Termite Gut	MNLEIRKPELIQRVHAEIHIRHLHDADELLEQALDALNEKSSPPASAAERRRAAGRKSLVEVFAPLRGMNLDFSRNQSTSRPGVF*
Ga0134125_101263283	3300010371	Terrestrial Soil	VTKSSKCVIIESETIQMNLQLHKPELAERVQAHIRNGHFHDADELIEKALDALEGKTSELPTEQRRGKAGRKNLAEVFAPLRGLNLDFSRDKSTGRPVDFS*
Ga0134126_100171445	3300010396	Terrestrial Soil	MEEMNLEIHDPELAERMNAHIQTGRFHNTDELIGKALDALDEQTPPPKSSATERRRAAGRKSLVEVFAPLRGMNLDFTRNRSASRPIDLA*
Ga0134127_102611842	3300010399	Terrestrial Soil	VTKNSKCVIIKSESIRMNLEIHKPGLADHVQAHIQNGRFHNADELIERALDALERKTTAPPPEQYRREAGRKSLVEVFAPLRGLDLDFSRNKSTGRPVDFS*
Ga0150984_1212261142	3300012469	Avena Fatua Rhizosphere	MNLEIHKPELVQRVSAYIRTGQFNSTDELIEKALDALEGKTPAPKSSAAERRRAAGRKSLVEVFAPLRGMNLDFTRNKSAGRPVDLG*
Ga0157370_111965832	3300013104	Corn Rhizosphere	MNLELHKPGLAARVQAHIQNGRFHDADEVIEKALDALEGKTTAPVPEQRRREAGRKSLVEVFAPLMGLNLDFGRDKSTGCPVDFS*
Ga0181521_100045587	3300014158	Bog	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPVAAPAEDIEELFAPLRGLNLDFSRNPSIGRPVDL*
Ga0181530_101862562	3300014159	Bog	MNIEIHKPELAQRVNAHIRTGRFHDADELLEKALDALEEKAPAPVSPARERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS*
Ga0181530_102685532	3300014159	Bog	MNLEIRNPGLVQRVNAQIQSGHFHDADELIEKALDALEEKTPAPSSAAERRRAAGRKSLVEVFAPLRGMNLDFSRNQSASRPVDLG*
Ga0181528_101617103	3300014167	Bog	MNLEIHKPELVRRVNAHIRTGHFHDADDLLEKALDALEGKGPAPASVAERRRAAGRKSLVEIFAPLRGMNLDFSRNKSASRPVDLG*
Ga0181528_103229072	3300014167	Bog	MNLEIHKPELVQRLNAHIQNGRFHDADEVLEKALDALEGKEDAVEEKEPLPMSPAERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS*
Ga0181534_104360062	3300014168	Bog	MNLEIHKPELVQRVNAHIQTGKFHDADEVLEKALDALEEKAPVPMSPAERRRAAGRRNLVDLLAPLQGLNLEFSRNKSAGRPVDLS*
Ga0181535_108852062	3300014199	Bog	MNLEIHKPELVQRVNAHIQTGKFHDADEVLEKALDALEEKAPVPMSPAERRRAAGRKSLVELFAPLQGLNLDFSRNKSAGRPVDLS*
Ga0181537_103776972	3300014201	Bog	MEGLTMNLEIHRPELVQRVNAQIQSGHFHDADELIEKALDALEGKTPAPASAAERRRAAGRKSLVEVFAPLRGMNLDFSRNNSAGRPVDLG*
Ga0182012_102280311	3300014499	Bog	MNLEIHKPELVQRVNAHIQTGLFHDADELLEKALDALEGKTPAPASAAKRRRAAGRKSLVEVFAPLRGMNLDFSRNKSASRPVDLG*
Ga0182012_107119031	3300014499	Bog	LRGTRRRPPVTITLKGGLTMNLEIQKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPTAAAPAKDIEELFAPLRGLNLDFSRNQSTGRPVDL*
Ga0182024_101231243	3300014501	Permafrost	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPASATERRRAVGRKSLVELSEPVRGLLTDEEVDRLFSRNQSASRPVDLG*
Ga0182024_108461913	3300014501	Permafrost	NAQLQSRHFQDVDELIEKALDEKTPAPAPDRRRAAGRKSLVEVFAPLRGMNLDFSRNKSASRPLDLG*
Ga0182024_109386342	3300014501	Permafrost	MNLEIQNPELVQRLDAHIRTGHFHDTEELIEKALDALDERVPAPESSAAERRHAAGRKSLVEVFAPLCGLNLDFSRNKNGSRPVDLE*
Ga0182030_105861192	3300014838	Bog	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSSGRPVDL*
Ga0182030_106056582	3300014838	Bog	LKEGLTMNLEINKPELVQRVNTQIQSRRLHNADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSTGRPVDL*
Ga0182030_113765861	3300014838	Bog	MNLEIHKPELVQRVNAQFQSGHFHDADEFIEKALDALEGKTPAPASAAERRRVAGRKSLVEVFAPLRGMNLDFSRNESAGRPVDLG*
Ga0182027_107894623	3300014839	Fen	MNLEIHKPELVRRVNAHIQTGQFRDANEVLEKALDALEEKAPVPMSPTERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPADLS*
Ga0187847_100545352	3300017948	Peatland	LVQRVNAHIRTGHFHDADELLEKALDALEEKALAPTSPARERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS
Ga0187783_114162961	3300017970	Tropical Peatland	MNIEIHRPELVQRVNARIQTGQFHDADELIEKALDALDEKTDTSASPAPEKDIEQLFAPLRGLNLDFSRNPSTGRPVEL
Ga0187863_101182704	3300018034	Peatland	MNLEIHKPELVQRVNAHIRTGHFHDADDLLEKALDALEEKAPAPASPARERRRAAGRKSLVELFAPLQGLNLDFSRNKSAGRPVDLS
Ga0187855_105120811	3300018038	Peatland	IHKPELVQRVNAQIQSRHLHDADELLEQALDALDEKSPTPAPAAERRRAVGRKSLVEVFAPLRGLFTDEEVDSLFSRSRSTSRPVDLG
Ga0187887_103770372	3300018043	Peatland	MNLEIHKPELVQRVNAQIQSRQLHDADELIERALDALDEKSPAPVSAAERRRAAGRKSLVEVFAALRGLNLDFSRNKSTGRPVDLS
Ga0187887_108179861	3300018043	Peatland	MNLEIHKPELVQRVNAQIQNGRFHDADEVLEKALDALEEKESVPMSPEERRRAAGRKSLVELFAPLQGLNLDFSRNKSGGRPVDLS
Ga0187887_108536992	3300018043	Peatland	MTLEIHKPELVQRVNAHIQNGRFHDADEVLEKALDALEEKEPAPVSPAERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS
Ga0187851_106267102	3300018046	Peatland	MNLEIHKPELVRRVNAHIRTGHFHDADDLLEKALDALEGKGPAPASVAERRRAAGRKSLVEIFAPLRGMNLDFSRNKSTGRPVDLS
Ga0181502_14404091	3300019242	Peatland	MNLEIHKPELVQRVNAHIQTGKFHDADEVLEKALDALEEKAPVPMSPAERRRAAGRKSLVELFAPLQGLNLDFSRNKSAGRPVDLS
Ga0210388_101378544	3300021181	Soil	MNLEIHKPGLVQRVNAQIQSGHFHDTDELIEKALDALEGKTPAPAAASAVERRRAAGRKSLVEVFAPLRGMNLDFSRNTSASRPVDLG
Ga0210388_108833232	3300021181	Soil	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSTGRPVDL
Ga0213881_101124011	3300021374	Exposed Rock	MNLEIHKAELVQRVSAYIRTGQFNNTDELIEKALDALEEKTPVPKASAAERRRAAGRKSLVEVFAPLRGMNLDFTRNKSAGRPVDLG
Ga0213881_101195112	3300021374	Exposed Rock	VNIQIQNPELVERVHAHIQTGRFQDADDLIEKALDALDEKIPSLAPAHPSKDIEKLFAPLRGLNLEFGRNPSTGRPVDL
Ga0213876_100755812	3300021384	Plant Roots	MNLEIHKPELVQRVQAQIQTGQFRNTDELIEKALDALEEKTPLPKPSAAARRRAAGRKSLVEVFAPLRGMNLDFTGNKCAGRPVDLG
Ga0213876_101017123	3300021384	Plant Roots	MNLVIHKPELAQRVKAYIQTGQFNSTDELIEKALDALEGKTPAPPSSSVERRRAAGRKSLVEVFAPLRGMNLDFARNKSSGRPVDLG
Ga0213876_102694242	3300021384	Plant Roots	MNLVIHKPELAQRVSAYIRTGQFNSTDELIEKALDALEGRRPAPPSLAVERRRAAGRKSLVEVFAPLRGITLDFTRNRSSGGPVDLG
Ga0213876_108052001	3300021384	Plant Roots	RRVQAQIQSGHFNDTDELLEKALDALEGKTSAPASSVAERRHAAGRKSLVEVFAPLRGMNLDFSRNKSPSRPVDLG
Ga0210398_102831301	3300021477	Soil	MSLEIHKPELVQRVNAQIQSRRLHDADELIEQALDALDEKSPAPASATEHRRAVGRKSLVELSEPVRGLLTDEEVDRLFSRNQSASRPVDLG
Ga0212088_101211487	3300022555	Freshwater Lake Hypolimnion	HIQSGHFHDADELLEKALDALEEEASAPGSSATERRRAAGRKSLVEVFAPLRGMNVDFERSQSASRQVVPG
Ga0224556_10636382	3300024295	Soil	MNLEIRKPELVQRVNTEVQIRQLHDADELLEQALDALDEKSPAPASAAERRRLAGRKSLVDVFAPLRGLNLDFSRNQSTGRPVDLS
Ga0207667_111318422	3300025949	Corn Rhizosphere	MNLELHKPELVERVNAQIQIRHLHDADELIEQALDALDQQCPATASPSERRGAEGRKSLVEVFAPLRGMNLDFSRNQSPGRPVDLS
Ga0302145_100680151	3300028565	Bog	IQSGRFHDADELIEKAIHALEGKSPASIAGHLSPGRKSLVEVFAPLRGMNPDFSRNKSASRPVDLG
Ga0265338_106123082	3300028800	Rhizosphere	MSLEIHKPELVQRVNAQIQSRRLHDADELLEQALDALDEKSPAPVSAADRRRAAGRKSLVEVFAPLRGLNLDFSRNKSTGRPVDLS
Ga0302278_101246183	3300028866	Bog	MNLEIHKPALVQRVNAQLQSRHFHDLDELIEKALDALDEKTPAPPSSAAERRRAAGRKSLVEVFAPLRGMDLDFSRNKSASRPVDLG
Ga0302154_100108216	3300028882	Bog	VNAQIQSGRFHDADELIEKAIHALEGKSPASIAGHLSPGRKSLVEVFAPLRGMNPDFSRNKSASRPVDLG
Ga0247275_11547782	3300029817	Soil	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPVAAPAEDIEELFAPLRGLNL
Ga0311327_106238512	3300029883	Bog	MTVLTMSLEIHKPELVQRVNAQIQSRHLRDADELLEQALDALDEKSPAPASAAERRRVAGRKSLVEVVAPLRGLNLDFSRNKSAGRPVDLS
Ga0311361_109910052	3300029911	Bog	MNLEIHKPELVERVNAHIQTGFFHDADELIEKALDALDEKTAAPAGCPPEKDIKELFAPLRGLNLDFNRNPSTGRPVEL
Ga0311361_111235521	3300029911	Bog	MNLEIHKPEPVQRVNAQIQSRQLHNADELIEQALEALDEKAPAPASAAERRRAAGRKSLVEVFAPLRGLNLDFSRNKSAGRPVDLS
Ga0311362_107404022	3300029913	Bog	MNLEIHKPELVQRVNAQFQSGHFHDADEFIEKALDALEGKTPAPASAAERRRVAGRKSLVEVFAPLRGMNLDFSRNESAGRPVDLG
Ga0311358_108915132	3300029915	Bog	LEIHKPELVQRVNAQIQSGRFHDADELIEKAIHALEGKSPASIAGHLSPGRKSLVEVFAPLRGMNPDFSRNKSASRPVDLG
Ga0311346_104472832	3300029952	Bog	MSLEIRKPELVQRVNAQIQIRHLHDADELLEQALDALDEKSPAPASAAERRRLAGRKSLVDVFAPLRGLNLDFSRNQSTGRPVDLS
Ga0311343_107629712	3300029953	Bog	MNLEIHKPALVQRVNAQLQSRHFHDLDELIEKALDALDEKTPAPPSSAAERRRAAGRKSLVEVFAPLRGMDLDFSRNKS
Ga0311331_102116221	3300029954	Bog	LQSRHFHDLDELIEKALDALDEKTPAPPSSAAERRRAAGRKSLVEVFAPLRGMDLDFSRNKSASRPVDLG
Ga0302194_103871732	3300030506	Bog	VQRVNAQIQSGRFHDADELIEKAIHALEGKSPASIAGHLSPGRKSLVEVFAPLRGMNPDFSRNKSASRPVDLG
Ga0302275_103457041	3300030518	Bog	HDLDELIEKALDALDEKTPAPPSSAAERRRAAGRKSLVEVFAPLRGMDLDFSRNKSASRPVDLG
Ga0311355_107590131	3300030580	Palsa	MNLEIHKPELVQRVNAHIQTGKFHNADEVLEKALEALEEKDALEEKAPVPMSPAERRRAVGRKSLVELFAPLQGLILDFSRNKSAGRPVDLS
Ga0265760_100896433	3300031090	Soil	EIHKPDLVRRVNAHIQTGHFHNADEVLEKALDALEEKAPVPMSPAERRRAEGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS
Ga0302325_100895715	3300031234	Palsa	MNLEVHKPELARRVQAHIQTGHFHDADEVREKALDALEEKATVPMSPAERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVNLT
Ga0302325_101637864	3300031234	Palsa	MQRHDNLEMEGLTMNLEIHKPELVERVNAQIRCRHLHDADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSTGRPIDL
Ga0302325_119412162	3300031234	Palsa	LKSISRSWYSAQFQSGHFHDADEFIEKALDALEGKTPAPASAAERRRVAGRKSLVEVFAPLRGMNLDFSRNESAGRPVDLG
Ga0302324_1002162294	3300031236	Palsa	KPELARRVQAHIQTGHFHDADEVREKALDALEEKATVPMSPAERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPVNLT
Ga0302324_1018508141	3300031236	Palsa	MNLEIHKPELVERVNAQIRCRHLHDADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSTGRPVDL
Ga0302320_100534517	3300031524	Bog	MNLEIQKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPTAAAPAKDIEELFAPLRGLNLDFSRNQSTGRPVDL
Ga0302320_120508832	3300031524	Bog	EIHKPGLMQRVNAQIQRGCFHDVDELLEKALDALDEKTPAPPSSAAERRRAAGRKRLVEIFAPLRGQFTDEQVETPFSRNRSTARPVDLG
Ga0302326_113498592	3300031525	Palsa	MNLEIHKPELVERVNAQIRCRHLHDADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSTGRPIDL
Ga0302326_126956882	3300031525	Palsa	MNLEIHKPELVERVNAQIQSGHFHDADELIEKALDALEGKRPAPASAAERRSATGRKSLVEVFAPLRGMNLDFSRNKSAGRPVDLG
Ga0302326_135244721	3300031525	Palsa	MNLEIHKPELVQRVNAQFQSGHFHDADEFIEKALDALEGKTPAPASAAERRRVAGRKSLVEVFAPLRGMNLDFSRNESAG
Ga0265313_101761331	3300031595	Rhizosphere	MNLEIHKSELAERVNAQLQSRHFQDVDELIEKALDEKTPAPDRRRAAVRKSLVEVFAPLRGMNLDFSRNKSASRPLDLG
Ga0310686_1000045182	3300031708	Soil	MRHDNLEKEGRTMNLEIHNPELVQRVNAQIQSGHFHDADEFIEKALDALEVKPPAAVSAMERRRAAGRKSLVEVFAPLRGMNLDFSRNKSAGRPVDLG
Ga0310686_1018328383	3300031708	Soil	MNLEIHKPELVQRVNAQIQSRHLHNADELIEQALDALDEKSPAPAAAPAKDIEELFAPLRGLNLDFSRNPSTGRPVDL
Ga0310686_1057720684	3300031708	Soil	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPASAAERRRAAGRKSLVEVFAPLRGLNLDFSRNQSTGRPVDLG
Ga0310686_1064964053	3300031708	Soil	MNLEIHKPDLVRRVNAHIQTGHFHNADEVLEKALDALEEKAPVPMSPAERRRAEGRKSLVELFAPLQGLNLDFSR
Ga0310686_1106296627	3300031708	Soil	YASAANNGSLQRNSAALAVTLNEGSDMNLEIHKPELVQRVNAHIQTGHFHDADEVLEKALDALEEKAPVPMSPAERRRVAGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS
Ga0310686_1113043571	3300031708	Soil	MNLEIHKPELVQRVNAQIQSRHLHDADELIEQALDALDEKSPAPASATESRRTVGRKSLVELSEPVRGLLTDEEVDRLFSRNQSASRPVDLG
Ga0310686_1173823382	3300031708	Soil	MNLEIRKPELVQRVNAQIQSRHLQDADELLQQALDALDEKSPAPASPAERRRAAGRKSLVEVFAPLRGLNLDFSRNKSTGRPVDLS
Ga0307476_110192463	3300031715	Hardwood Forest Soil	MNAQLRRRHFHDVDELIEKALDALDEKSPAPASAAERRRAAGRKSLVEVFAPLRGLNLDFSRNQSTGRPVDLS
Ga0302319_103041865	3300031788	Bog	KGPTMNLEIHKPELVERVNAHIQTGFFHDADELIEKALDALDEKTAAPAGCPPEKDIKELFAPLRGLNLDFNRNPSTGRPVEL
Ga0302319_113089391	3300031788	Bog	ESGASTMNLEIRKPELVQRVNTEVQIRQLHDADELLEQALDALDEKSPAPASAAERRRLAGRKSLVDVFAPLRGLNLDFSRNQSTGRPVDLS
Ga0302319_113966422	3300031788	Bog	MNLEIHKPELVQRVNAQIQSGHFHDADEFIEKALDALERKTPAPASAAERRRAAGRKSLVEVFAPLRGMSLDFSRNQSGSRPVDLG
Ga0348332_141832461	3300032515	Plant Litter	HKPDLVRRVNAHIQTGHFHNADEVLEKALDALEEKAPVPMSPAERRRAEGRKSLVELFAPLQGLNLDFSRNKSTGRPVDLS
Ga0335078_104020312	3300032805	Soil	MNLEIHRPELVERVNAHIQTGKFHDADEVLEKALDALEEKAPVPMSPAERRRAAGRKSLVELFAPLQGLNLDFSRDKSTGRPVDLS
Ga0335078_108767463	3300032805	Soil	MNLEIHKPELVERVNAHIQTGKFHDADEVLEKALDALEEKAPVPMSPAQRRRAAGRKSLVELFAPLQGLNLDFGRNKSTGRPVDLS
Ga0335081_118977733	3300032892	Soil	MSLEIHKPELVRRVNAHIQTGQFHDADELIEKALDALEEKTPAAPSSAAERRHAAGRKSLVEVFAPLRGMNLDFSRNKSASRPVDLA
Ga0335073_110035522	3300033134	Soil	MNLEIHKPELVQRVNAQIESRHLHDADELLEQALDALDENSPAPAKDIEELFAPLRGLNLDFSRNPPTGRPVDL
Ga0371490_11420891	3300033561	Peat Soil	VNLEIHNPELVHAHIQTGQFHDAEEVLEKALDALEEKAPVPMSPAERRRAAGRKSLVELFAPLQGLSLDFSRNKSTGRPVDLS
Ga0334790_198526_154_414	3300033887	Soil	MNLEIHKPELVRRVNAHIQTGQFRDANEVLEKALDALEEKAPVPMSPTERRRAAGRKSLVELFAPLQGLNLDFSRNKSTGRPADLS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096493

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences