Metagenome Family F096441

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096441
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	50 residues
Representative Sequence	MQTDNTLILKDSKFKALKHKELAKANITIKLIKQLLPDMLLIFNKYIL
Number of Associated Samples	34
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	30.39 %
% of genes near scaffold ends (potentially truncated)	47.12 %
% of genes from short scaffolds (< 2000 bps)	63.46 %
Associated GOLD sequencing projects	27
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.692 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (86.538 % of family members)
Environment Ontology (ENVO)	Unclassified (56.731 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.769 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.53% β-sheet: 0.00% Coil/Unstructured: 39.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF17107	SesA	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
All Organisms	root	All Organisms	42.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
cellular organisms	root	All Organisms → cellular organisms	41.35 %
Viruses	superkingdom	All Organisms → Viruses	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	41.35 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	33.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Fungi	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	5.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Dikarya	subkingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	5.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Ascomycota	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	5.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
saccharomyceta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta	4.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Pezizomycotina	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	4.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
leotiomyceta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta	4.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
sordariomyceta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta	4.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Leotiomycetes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes	4.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Helotiales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales	4.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Lachnaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Lachnaceae	0.96 %
Helotiales incertae sedis	no rank	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Helotiales incertae sedis	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Cadophora	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Helotiales incertae sedis → Cadophora	0.96 %
Lachnellula	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Lachnaceae → Lachnellula	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Lachnellula cervina	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Lachnaceae → Lachnellula → Lachnellula cervina	0.96 %
unclassified Cadophora	no rank	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Helotiales incertae sedis → Cadophora → unclassified Cadophora	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Cadophora sp. DSE1049	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Helotiales incertae sedis → Cadophora → unclassified Cadophora → Cadophora sp. DSE1049	0.96 %
Lachnellula cervina	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Lachnaceae → Lachnellula → Lachnellula cervina	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300009623\|Ga0116133_1101097	All Organisms → cellular organisms → Eukaryota → Opisthokonta	733	Open in IMG/M
3300009624\|Ga0116105_1151385	All Organisms → cellular organisms → Eukaryota → Opisthokonta	615	Open in IMG/M
3300009628\|Ga0116125_1132581	Not Available	682	Open in IMG/M
3300009631\|Ga0116115_1108147	Not Available	711	Open in IMG/M
3300009638\|Ga0116113_1059698	Not Available	888	Open in IMG/M
3300014654\|Ga0181525_10517103	Not Available	661	Open in IMG/M
3300014654\|Ga0181525_10649525	Not Available	590	Open in IMG/M
3300017946\|Ga0187879_10704987	Not Available	562	Open in IMG/M
3300018034\|Ga0187863_10352310	Not Available	819	Open in IMG/M
3300018035\|Ga0187875_10697504	All Organisms → cellular organisms → Eukaryota → Opisthokonta	533	Open in IMG/M
3300018038\|Ga0187855_10849006	Not Available	533	Open in IMG/M
3300018042\|Ga0187871_10783560	Not Available	532	Open in IMG/M
3300018044\|Ga0187890_10790341	Not Available	537	Open in IMG/M
3300025459\|Ga0208689_1094408	Not Available	535	Open in IMG/M
3300028759\|Ga0302224_10009269	All Organisms → cellular organisms → Eukaryota → Opisthokonta	3647	Open in IMG/M
3300028759\|Ga0302224_10013957	Not Available	2937	Open in IMG/M
3300028759\|Ga0302224_10020091	Not Available	2447	Open in IMG/M
3300028759\|Ga0302224_10022452	All Organisms → cellular organisms → Eukaryota	2319	Open in IMG/M
3300028759\|Ga0302224_10026646	Not Available	2129	Open in IMG/M
3300028759\|Ga0302224_10038944	Not Available	1764	Open in IMG/M
3300028759\|Ga0302224_10088625	Not Available	1184	Open in IMG/M
3300028759\|Ga0302224_10089655	Not Available	1177	Open in IMG/M
3300028759\|Ga0302224_10094667	Not Available	1146	Open in IMG/M
3300028759\|Ga0302224_10184274	Not Available	825	Open in IMG/M
3300028759\|Ga0302224_10215525	Not Available	762	Open in IMG/M
3300028759\|Ga0302224_10227121	Not Available	742	Open in IMG/M
3300028759\|Ga0302224_10228254	Not Available	740	Open in IMG/M
3300028759\|Ga0302224_10336389	Not Available	609	Open in IMG/M
3300028776\|Ga0302303_10136193	All Organisms → cellular organisms → Eukaryota → Opisthokonta	877	Open in IMG/M
3300028795\|Ga0302227_10237052	Not Available	699	Open in IMG/M
3300028798\|Ga0302222_10351642	Not Available	575	Open in IMG/M
3300028806\|Ga0302221_10000622	All Organisms → cellular organisms → Eukaryota → Opisthokonta	25100	Open in IMG/M
3300028806\|Ga0302221_10001700	All Organisms → cellular organisms → Eukaryota → Opisthokonta	13998	Open in IMG/M
3300028806\|Ga0302221_10001928	Not Available	13127	Open in IMG/M
3300028806\|Ga0302221_10001960	All Organisms → cellular organisms → Eukaryota → Opisthokonta	13024	Open in IMG/M
3300028806\|Ga0302221_10002026	All Organisms → cellular organisms → Eukaryota	12775	Open in IMG/M
3300028806\|Ga0302221_10003075	Not Available	10182	Open in IMG/M
3300028806\|Ga0302221_10005257	All Organisms → cellular organisms → Eukaryota → Opisthokonta	7453	Open in IMG/M
3300028806\|Ga0302221_10007818	All Organisms → cellular organisms → Eukaryota → Opisthokonta	5863	Open in IMG/M
3300028806\|Ga0302221_10008351	All Organisms → cellular organisms → Eukaryota → Opisthokonta	5635	Open in IMG/M
3300028806\|Ga0302221_10009368	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	5244	Open in IMG/M
3300028806\|Ga0302221_10010217	All Organisms → cellular organisms → Eukaryota → Opisthokonta	4971	Open in IMG/M
3300028806\|Ga0302221_10010726	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales	4822	Open in IMG/M
3300028806\|Ga0302221_10012876	All Organisms → cellular organisms → Eukaryota	4317	Open in IMG/M
3300028806\|Ga0302221_10013606	All Organisms → Viruses → Predicted Viral	4166	Open in IMG/M
3300028806\|Ga0302221_10013913	All Organisms → cellular organisms → Eukaryota → Opisthokonta	4111	Open in IMG/M
3300028806\|Ga0302221_10015063	Not Available	3915	Open in IMG/M
3300028806\|Ga0302221_10016815	Not Available	3669	Open in IMG/M
3300028806\|Ga0302221_10046692	Not Available	1997	Open in IMG/M
3300028806\|Ga0302221_10204142	Not Available	865	Open in IMG/M
3300028806\|Ga0302221_10343132	Not Available	651	Open in IMG/M
3300028863\|Ga0302218_10061643	Not Available	1176	Open in IMG/M
3300028863\|Ga0302218_10095422	Not Available	934	Open in IMG/M
3300029882\|Ga0311368_10560926	All Organisms → cellular organisms → Eukaryota	811	Open in IMG/M
3300029882\|Ga0311368_11091990	All Organisms → cellular organisms → Eukaryota → Opisthokonta	519	Open in IMG/M
3300029910\|Ga0311369_11521389	Not Available	501	Open in IMG/M
3300029944\|Ga0311352_10214911	All Organisms → cellular organisms → Eukaryota	1633	Open in IMG/M
3300029944\|Ga0311352_10710214	Not Available	793	Open in IMG/M
3300029944\|Ga0311352_10907249	Not Available	683	Open in IMG/M
3300029944\|Ga0311352_11045841	Not Available	626	Open in IMG/M
3300029944\|Ga0311352_11441099	All Organisms → cellular organisms → Eukaryota → Opisthokonta	517	Open in IMG/M
3300029999\|Ga0311339_10153967	Not Available	2694	Open in IMG/M
3300029999\|Ga0311339_10178737	All Organisms → cellular organisms → Eukaryota → Opisthokonta	2440	Open in IMG/M
3300029999\|Ga0311339_10406675	All Organisms → cellular organisms → Eukaryota	1417	Open in IMG/M
3300029999\|Ga0311339_11025773	Not Available	771	Open in IMG/M
3300029999\|Ga0311339_11353433	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Helotiales incertae sedis → Cadophora → unclassified Cadophora → Cadophora sp. DSE1049	642	Open in IMG/M
3300029999\|Ga0311339_11536627	Not Available	591	Open in IMG/M
3300030007\|Ga0311338_10327832	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1677	Open in IMG/M
3300030007\|Ga0311338_10540368	Not Available	1213	Open in IMG/M
3300030007\|Ga0311338_11100596	Not Available	762	Open in IMG/M
3300030007\|Ga0311338_12080102	Not Available	502	Open in IMG/M
3300030042\|Ga0302300_1067798	Not Available	1117	Open in IMG/M
3300030042\|Ga0302300_1112033	Not Available	810	Open in IMG/M
3300030042\|Ga0302300_1167892	All Organisms → cellular organisms → Eukaryota → Opisthokonta	626	Open in IMG/M
3300030043\|Ga0302306_10018839	All Organisms → cellular organisms → Eukaryota → Opisthokonta	2885	Open in IMG/M
3300030043\|Ga0302306_10258088	Not Available	669	Open in IMG/M
3300030043\|Ga0302306_10325812	All Organisms → cellular organisms → Eukaryota → Opisthokonta	588	Open in IMG/M
3300030057\|Ga0302176_10242251	Not Available	722	Open in IMG/M
3300030399\|Ga0311353_10013843	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales	9322	Open in IMG/M
3300030399\|Ga0311353_10019999	All Organisms → cellular organisms → Eukaryota → Opisthokonta	7416	Open in IMG/M
3300030399\|Ga0311353_10024321	All Organisms → cellular organisms → Eukaryota	6572	Open in IMG/M
3300030399\|Ga0311353_10032314	All Organisms → cellular organisms → Eukaryota → Opisthokonta	5524	Open in IMG/M
3300030399\|Ga0311353_10075507	All Organisms → cellular organisms → Eukaryota → Opisthokonta	3332	Open in IMG/M
3300030399\|Ga0311353_10094672	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Lachnaceae → Lachnellula → Lachnellula cervina	2917	Open in IMG/M
3300030399\|Ga0311353_10116136	Not Available	2587	Open in IMG/M
3300030503\|Ga0311370_11372661	Not Available	749	Open in IMG/M
3300030520\|Ga0311372_12727442	All Organisms → cellular organisms → Eukaryota → Opisthokonta	546	Open in IMG/M
3300030618\|Ga0311354_10119277	All Organisms → cellular organisms → Eukaryota → Opisthokonta	2922	Open in IMG/M
3300030618\|Ga0311354_10191672	Not Available	2193	Open in IMG/M
3300030618\|Ga0311354_10664145	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1002	Open in IMG/M
3300030618\|Ga0311354_11070382	Not Available	738	Open in IMG/M
3300031234\|Ga0302325_10174747	Not Available	3770	Open in IMG/M
3300031234\|Ga0302325_10188045	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales	3587	Open in IMG/M
3300031234\|Ga0302325_10634257	Not Available	1561	Open in IMG/M
3300031234\|Ga0302325_10990256	Not Available	1150	Open in IMG/M
3300031234\|Ga0302325_11257284	Not Available	978	Open in IMG/M
3300031234\|Ga0302325_13018565	All Organisms → cellular organisms → Eukaryota → Opisthokonta	543	Open in IMG/M
3300031236\|Ga0302324_100438865	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1931	Open in IMG/M
3300031236\|Ga0302324_101743083	Not Available	795	Open in IMG/M
3300031236\|Ga0302324_102065415	All Organisms → cellular organisms → Eukaryota → Opisthokonta	712	Open in IMG/M
3300031525\|Ga0302326_11555848	All Organisms → cellular organisms → Eukaryota	882	Open in IMG/M
3300031525\|Ga0302326_11682342	Not Available	838	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.54%
Aquatic	Environmental → Aquatic	13.46%

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	86.54%
Freshwater	Environmental → Aquatic → Freshwater	13.46%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	86.54%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.46%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	86.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.69%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.77%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	86.54%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300025459	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028776	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030042	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_1	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0116133_11010971	3300009623	Peatland	MQTNNTLILRDNKFKALKYKELAKANITIKLIKQLLPDMLLIFNKCVF*
Ga0116105_11513851	3300009624	Peatland	MQTDDTLILRDSKFKALKHKELAKANIIIKLTKQLLLDMPLI
Ga0116125_11325811	3300009628	Peatland	MQIDNTLILRDSKFKALKHKELAKANIITKLIKQLLLDILLIFNKYIFRQERDSILLV*
Ga0116115_11081471	3300009631	Peatland	MQTDNTLILKDSKFKALKHKELAKANITTKLIKQLLLDILLIFNKYILRQK
Ga0116113_10596981	3300009638	Peatland	MQIDNTLILKDSKFKALKYKELAKANIIIKLIKQLSLDMLLIFNKCIL*
Ga0181525_105171031	3300014654	Bog	MQINDTLILKDSKFKALKYKELAKANITIKPTKQLLPDMLLIFNKYILRQEGDSILLIQKG*
Ga0181525_106495251	3300014654	Bog	TDNTLILKDSKFKALKHKELAKANIITKLIKQLLLDILFIFNKYIL*
Ga0187879_107049871	3300017946	Peatland	MQTDNTLILKDSKFKALKYKELIKANIIIKLIKQLLLDMLL
Ga0187863_103523101	3300018034	Peatland	MQINNTLILRDSKFKALKHEELAKANITIKLIKQLLPDMLLIFNGYIL
Ga0187875_106975041	3300018035	Peatland	GLIKMQIDDALILKDSKFKALKHKELAKANITIKLTKQLLLDILLIFNGCVF
Ga0187855_108490061	3300018038	Peatland	MQINNTLILKDSKFKALKHEELVKANIITKLIKQLLLNTLLIFNKYILRQEGDSILLVQK
Ga0187871_107835601	3300018042	Peatland	MFRLVEMQINDTLILRDSKFKALKYKELVKANIIIKLIKQLLPDMLLIFNKYIL
Ga0187890_107903411	3300018044	Peatland	MQTDDTLILRDSKFKALKHEELAKANITIKLIKQLSPDMLLIFNKYILRQKGDSILLVQK
Ga0208689_10944081	3300025459	Peatland	MQINDTLILKDSKFKALKHKELAKANITTKLIKQLLPDMLLIFNKCVFRQERDSILLVQK
Ga0302224_100092692	3300028759	Palsa	MQIDDTLILGDSKFKALKHEELAKANIIAKLIKQLSLDMLLIFNECVLR
Ga0302224_100139571	3300028759	Palsa	MQINDTLILRDSKFKALKYKELAKANITIKLIKQLSLNILLIFNKYIF
Ga0302224_100200911	3300028759	Palsa	MQINNTLILEDSKFKALKYKELAKANITIKLIKQLLFDILLIFNKYIL
Ga0302224_100224522	3300028759	Palsa	MQIDNTLILGDSKFKALKYKELAKANITAKLIKQLSLNMLLIFNKCVL
Ga0302224_100266461	3300028759	Palsa	MFKLIEMQTNNTLILKDSKFKALKHKELIKANITIKLIKQLLPDMLLIFNGYIL
Ga0302224_100389441	3300028759	Palsa	MQINNTLILKDSKFKALKHKELAKANITINLIKKLLLNILLIFDKYILSQEGESILLV
Ga0302224_100886251	3300028759	Palsa	MQIDNTLILKDSKFKALKHKEPVKANIIIKLIKQLLPDILLIFNKYILRQERYSILLV
Ga0302224_100896551	3300028759	Palsa	MQIDNTLILRDSKFKALKHKKLAKANISIKLIKQLLFDMLSIFNKCVF
Ga0302224_100946672	3300028759	Palsa	GMQINDTLILKDSKFKALKHKELAKANITIKLIKQLLLDILLIFNKCVL
Ga0302224_101842742	3300028759	Palsa	MQINNTLILKDSKFKALKHKELAKANIIAKPIKQLLLDMLLIFNRYIHQEKKTCQRFFA
Ga0302224_102155251	3300028759	Palsa	MQIDNTLILRDSKFKALKHKELAKANITTKLIKQLSPDMLLIFNKCAFRQEGDLILLVQK
Ga0302224_102271211	3300028759	Palsa	MQTNNTLILKDSKFKALKYKELIKANITIKLIKQLLLDMLLIFNGYIL
Ga0302224_102282541	3300028759	Palsa	MQINDTLILKDSKFKALKHKELAKANIIIKLIKQLSLDILLIFNKYIL
Ga0302224_103363891	3300028759	Palsa	MQIDNTLILGDSKFKALKYKELVKANITIKLTKQLSLDMLLIFNKYIF
Ga0302303_101361931	3300028776	Palsa	MQTDNTLILKDNRFKALKHEELVKANITAKLIKQLLLNMLLIFNKCVF
Ga0302227_102370521	3300028795	Palsa	MQIDNTLILKDSKFKALKHKEPVKANIIIKLIKQLLPDILLIFNKYILRQERDSILLV
Ga0302222_103516421	3300028798	Palsa	KMQIDNTLILGDSKFKALKYKKLAKANITTKPIKQLSPDILLIFNRCVL
Ga0302221_100006221	3300028806	Palsa	MQTNNTLILRDSKFKALKYKELLKANITIKLIKQLLPDMLLIFNKCVL
Ga0302221_100017001	3300028806	Palsa	MQTNNTLILENSKFKALKHKELAKANIITKLTKQLSLNMLLIFNKCVF
Ga0302221_100019284	3300028806	Palsa	MQTNNTLILRNSKFKALKHKKLAKANIIAKLIKQLSLNMLLIFNKYII
Ga0302221_100019604	3300028806	Palsa	MQTNNTLILRDSKFKALKHKELAKANITAKLIKQLSLDMLLIFNKCVLRQKGDLILLVQK
Ga0302221_100020261	3300028806	Palsa	MQTDNTLILRDNRFKALKHKELAKANIIIKLIKQLSLDMLLIFNRFILRQKGDSILLVQK
Ga0302221_100030751	3300028806	Palsa	MQTNNTLILEDSKFKALKYKELAKANIIIKPIKQLLLDMLLIFNRYIF
Ga0302221_100052572	3300028806	Palsa	MQIDDTLILKDSKFKALKYEELVKANITAKLIKQLSLNMLLIFNKCVF
Ga0302221_100078183	3300028806	Palsa	MQIDDTLILRDSKFKALKYEELAKANITAKLIKQLXFNMLLIFNKYIL
Ga0302221_100083511	3300028806	Palsa	MQMDNTLILKDSKFKALKYKELAKVNITTKLIKQLSLDMLLIFNKCVF
Ga0302221_100093682	3300028806	Palsa	MQTDDTLILRDSKFKALEYKELAKANITIKLIKQLLLDMLLIFNGCVLR
Ga0302221_100102173	3300028806	Palsa	MQTNNTLILKDSKFKTLKHKKLVKANITTKLTKQLLLDM
Ga0302221_100107261	3300028806	Palsa	INDTLILKDSKFKALKHEELVKANITIKLTKQLLLDMLLIFNRCVL
Ga0302221_100128762	3300028806	Palsa	MQIDDTLILKDSKFKALKHKELAKANITIKLIKQLLPDMLLIFNGYIL
Ga0302221_100136062	3300028806	Palsa	MQIDNTLILRDSKFKALKHKELAKANITTKLIKQLSLNMLLIFNKYIL
Ga0302221_100139131	3300028806	Palsa	MQTDDTLILKDSKFKALKYKELAKANIIAKLIKQLLLDILLIFNKYIL
Ga0302221_100150631	3300028806	Palsa	MQTNDTLILRDSKFKALKHKELAKANIIIKLIKQLSLDMLLIFNKCIL
Ga0302221_100168151	3300028806	Palsa	MQINDTLILKDSKFKALKYEELAKANITTKLIKQLLLDMLLIFNKYIF
Ga0302221_100466921	3300028806	Palsa	MQIDNTLILGDSKFKALKYKELIKANITTKLIKQLSLDMLLIFNKYIF
Ga0302221_102041421	3300028806	Palsa	MQTDNTLILKDSKFKALKHKELAKANITIKLIKQLLPDMLLIFNKYIL
Ga0302221_103431321	3300028806	Palsa	LRDNKFKALKHKELAKANIIIKLIKQLLPDMLLIFNKCVL
Ga0302218_100616431	3300028863	Palsa	FKLVKMQIDNTLILEDSKFKALKHKELVKANITTKLIKQLSLDMLLIFNKCVL
Ga0302218_100954221	3300028863	Palsa	KLVKMQIDNTLILRDSKFKALKHKELAKANITTKLIKQLSPDMLLIFNKCAFRQEGDLILLVQKG
Ga0311368_105609261	3300029882	Palsa	DTLILKDSKFKALKHKELAKANIIIKLIKQLSLDILLIFNKYIL
Ga0311368_110919901	3300029882	Palsa	TLILKDSKFKALKHKELAKANIIIKPTKQLSPNMLLIFNGYILRQEGDSILLVQKG
Ga0311369_115213891	3300029910	Palsa	MQTNNILILKDSKFKALKHKELIKANITIKLIKQLSLDMLLIFNK
Ga0311352_102149111	3300029944	Palsa	NDTLILKDSKFKVLKHKELAKANITIKLIKQLLPDILLIFNGCVLR
Ga0311352_107102141	3300029944	Palsa	MFKLIEMQTNNTLILKDSKFKALKHKELIKANITIKLIKQLLPDMLLIFNKYI
Ga0311352_109072491	3300029944	Palsa	MQTDNTLILKDSKFKALKHEELVKANITIKLTKQLLLDMLLIFNRC
Ga0311352_110458412	3300029944	Palsa	MQTDDTLILRDSKFKALEYKELAKANITIKLIKQLLLDMLLIFNGCV
Ga0311352_114410991	3300029944	Palsa	FRLVKMQTNNILILKDSKFKALKHKELIKANITIKPTKQLPLDILLIFNKYILRQEGNSILLV
Ga0311339_101539673	3300029999	Palsa	MQINDTLILKDSKFKALKHKELAKANITIKLIKQLLLDILLIFNKCVL
Ga0311339_101787371	3300029999	Palsa	MQTDNTLILKDSKFKALKHEELVKANITIKLIKQLLPEILLIFNKCVF
Ga0311339_104066751	3300029999	Palsa	IIAYMFKLIEMQTNNTLILKDSKFKALKHKELIKANITIKLIKQLLPDMLLIFNGYIL
Ga0311339_110257731	3300029999	Palsa	NNTLILKDSKFKALKHKELVKANIIAKLIKQLSLDMLLIFNKCAL
Ga0311339_113534331	3300029999	Palsa	IIAYAFGLVKMQTDNTLILKDSKFKALKYKELAKANITTKLIKQLSLDMLLIFNKCVL
Ga0311339_115366271	3300029999	Palsa	MQIDDTLILKDSKFKALKHKELAKANITIKLIKQLLPDMLL
Ga0311338_103278321	3300030007	Palsa	LILRDSKFKALKHKELAKANITIKPIKQLLPDMLLIFNKCVL
Ga0311338_105403681	3300030007	Palsa	MQINDTLILKDSKFKALKHKELAKANITIKLTKQLLSDMLLIFNKYIF
Ga0311338_111005961	3300030007	Palsa	DTLILKDSKFKALKYEELVKANITAKLIKQLSLNMLLIFNKCVF
Ga0311338_120801021	3300030007	Palsa	LILRDSKFKALKHEELIKANITIKPTKQLSPDMLLIFNKCIFRQKGDSILLVQKG
Ga0302300_10677981	3300030042	Palsa	MQIDNTLILKDSKFKALKHKEPVKANIIIKLIKQLLPDILLIFNKYILRQERD
Ga0302300_11120331	3300030042	Palsa	MQIDNTLILRDSKFKALKHKELAKANITTKLIKQLSLNMLL
Ga0302300_11678921	3300030042	Palsa	MQTDDTLILKDNKFKALKHKELAKANITTKLIKQLS
Ga0302306_100188392	3300030043	Palsa	MQINDTLILKDSKFKALKYKELVKANITIKLIKQLLPDMLLIFNKYIF
Ga0302306_102580881	3300030043	Palsa	LKDSKFKALKYKELVKANITIKLIKQLLLDMLLIFNKCIL
Ga0302306_103258121	3300030043	Palsa	VYIFELVKMQTDNTLILKDSKFKALKHEELVKANITIKLIKQLLPEILLIFNKCVF
Ga0302176_102422511	3300030057	Palsa	MQINNTLILRDSKFKALKHEELAKANIIAKLIKQLLPDMLLIFNGCVLRQEGDSILLV
Ga0311353_100138432	3300030399	Palsa	MQIDNTLILEDSKFKALKHKELVKANITTKLIKQLSLDMLLIFNKCVL
Ga0311353_100199993	3300030399	Palsa	MQTNNTLILKDSKFKTLKHKKLVKANITTKLTKQLLLDMLLIFNKYIF
Ga0311353_100243211	3300030399	Palsa	VTIILQAFRLVEMQTDDTLILGDSKFKALKHKELAKANITIKLIKQLLSDILLIFNKYIL
Ga0311353_100323142	3300030399	Palsa	MQTNNILILKDSKFKALKHKELIKANITIKLIKQLSLDMLLIFNKCVL
Ga0311353_100755071	3300030399	Palsa	MQTDNTLILKDSKFKALKYKELAKANITTKLIKQLSLDMLLIFNKCVL
Ga0311353_100946721	3300030399	Palsa	MQINNTLILRDSKFKALKHEELAKANIIAKLIKQLLPDMLLIFNKYILQQEGDSILLV
Ga0311353_101161361	3300030399	Palsa	MQINNTLILRDSKFKALKHKEFAKANITIKLIKQLLPNMLLIFNKCIF
Ga0311370_113726611	3300030503	Palsa	DDTLILKDSKFKALKHKELIKANITTKPIKQLSLDILLIFNKCIL
Ga0311372_127274421	3300030520	Palsa	MQTDDTLILKDNKFKALKHKELAKANITTKLIKQLSLDILLIFN
Ga0311354_101192771	3300030618	Palsa	MQTDDTLILKDNKFKALKHKELAKANITTKLIKQLSLDILLIFNKYILRQKGDSILLVQK
Ga0311354_101916721	3300030618	Palsa	MQTNNTLILEDSKFKALKYKELAKANIIIKPIKQLLLDMLLIFNRYI
Ga0311354_106641451	3300030618	Palsa	GLVEMQTDDTLILRDSKFKALEYKELAKANITIKLIKQLLLDMLLIFNGCVLR
Ga0311354_110703821	3300030618	Palsa	AFKLVKIQINNTLILKDSKFKALKHKELVKANIIAKLIKQLSLNLLLIFNKYIL
Ga0302325_101747472	3300031234	Palsa	LPFSNNNSISFKLVKMQTNNTLILKDSKFKTLKHKKLVKANITTKLTKQLLLDMLLIFNKYIF
Ga0302325_101880451	3300031234	Palsa	IIVYIFELVKMQTDNTLILKDSKFKALKHEELVKANITIKLTKQLLLDMLLIFNRCVL
Ga0302325_106342571	3300031234	Palsa	AFKLVKMQIDNTLILRDSKFKALKHKELAKANITTKLIKQLSLNMLLIFNKYIL
Ga0302325_109902561	3300031234	Palsa	MQIDNTLILKDSKFKALKHKELIKANIIVKLIKQLSLNMLLIL
Ga0302325_112572842	3300031234	Palsa	MQTDNTLILKDSKFKALKHEELVKANITIKLIKQLLPEILLIF
Ga0302325_130185651	3300031234	Palsa	LILKDSKFKALKHEELAKANITTKLTKQLLPDMLLIFNGYVFRQEGDLILLVQKG
Ga0302324_1004388651	3300031236	Palsa	LILKDSKFKALKHKELAKANITIKLTKQLLSDMLLIFNKYIF
Ga0302324_1017430831	3300031236	Palsa	MQINNTLILKDSKFKALKHKELAKANIIAKPIKQLLLDMLLIFNRYIHQ
Ga0302324_1020654151	3300031236	Palsa	NTLILKDSKFKALKYKELVKANIIIKLIKQLLLDMLLIFNKYIL
Ga0302324_1030767481	3300031236	Palsa	MQINDTLILKDSKFKALKHKELAKANITIKLIKQLLLD
Ga0302326_109671751	3300031525	Palsa	MQTNNTLILKDSKFKALKYKELIKANITIKLIKQLL
Ga0302326_115558481	3300031525	Palsa	DTLILRDSKFKALKHEELIKANITIKPTKQLSPDMLLIFNKCIFRQKGDSILLVQKG
Ga0302326_116823421	3300031525	Palsa	MFKLIEMQTNNTLILKDSKFKALKHKELIKANITIKLIKQLLPDMLLIFN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096441

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences