NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F096380

Metagenome Family F096380

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096380
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 43 residues
Representative Sequence ITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLI
Number of Associated Samples 13
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 8.91 %
% of genes near scaffold ends (potentially truncated) 94.23 %
% of genes from short scaffolds (< 2000 bps) 48.08 %
Associated GOLD sequencing projects 13
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (81.731 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater
(91.346 % of family members)
Environment Ontology (ENVO) Unclassified
(93.269 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(91.346 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 34.15%    Coil/Unstructured: 65.85%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF00072Response_reg 2.88
PF01063Aminotran_4 1.92
PF02881SRP54_N 1.92
PF04879Molybdop_Fe4S4 1.92
PF00753Lactamase_B 1.92
PF13692Glyco_trans_1_4 1.92
PF13749HATPase_c_4 1.92
PF12399BCA_ABC_TP_C 1.92
PF00912Transgly 1.92
PF00691OmpA 1.92
PF00005ABC_tran 1.92
PF01418HTH_6 1.92
PF01977UbiD 0.96
PF10263SprT-like 0.96
PF07726AAA_3 0.96
PF00224PK 0.96
PF13304AAA_21 0.96
PF01885PTS_2-RNA 0.96
PF13614AAA_31 0.96
PF00754F5_F8_type_C 0.96
PF00528BPD_transp_1 0.96
PF00117GATase 0.96
PF00334NDK 0.96
PF01882DUF58 0.96
PF04166PdxA 0.96
PF02774Semialdhyde_dhC 0.96
PF02653BPD_transp_2 0.96
PF07963N_methyl 0.96
PF00202Aminotran_3 0.96
PF07690MFS_1 0.96
PF00483NTP_transferase 0.96
PF03773ArsP_1 0.96
PF01810LysE 0.96
PF00478IMPDH 0.96
PF00795CN_hydrolase 0.96
PF03449GreA_GreB_N 0.96
PF07498Rho_N 0.96
PF00793DAHP_synth_1 0.96
PF13483Lactamase_B_3 0.96
PF00700Flagellin_C 0.96
PF01966HD 0.96
PF00133tRNA-synt_1 0.96
PF17131LolA_like 0.96
PF06676DUF1178 0.96
PF02335Cytochrom_C552 0.96
PF08275Toprim_N 0.96
PF02518HATPase_c 0.96
PF05036SPOR 0.96
PF04715Anth_synt_I_N 0.96
PF02113Peptidase_S13 0.96
PF02310B12-binding 0.96
PF14535AMP-binding_C_2 0.96
PF13337BrxL_ATPase 0.96
PF06792UPF0261 0.96
PF00724Oxidored_FMN 0.96
PF08668HDOD 0.96
PF14559TPR_19 0.96
PF13604AAA_30 0.96
PF02540NAD_synthase 0.96
PF00873ACR_tran 0.96
PF01642MM_CoA_mutase 0.96
PF14520HHH_5 0.96
PF00011HSP20 0.96
PF03547Mem_trans 0.96
PF01750HycI 0.96
PF09350DJC28_CD 0.96
PF13175AAA_15 0.96
PF00885DMRL_synthase 0.96
PF00378ECH_1 0.96
PF01702TGT 0.96
PF11449ArsP_2 0.96
PF12838Fer4_7 0.96
PF04055Radical_SAM 0.96
PF14622Ribonucleas_3_3 0.96
PF13426PAS_9 0.96
PF01869BcrAD_BadFG 0.96
PF06941NT5C 0.96
PF08843AbiEii 0.96
PF06114Peptidase_M78 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG0115Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyaseAmino acid transport and metabolism [E] 3.85
COG0147Anthranilate/para-aminobenzoate synthases component IAmino acid transport and metabolism [E] 1.92
COG0744Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidaseCell wall/membrane/envelope biogenesis [M] 1.92
COG1737DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domainsTranscription [K] 1.92
COG5009Membrane carboxypeptidase/penicillin-binding proteinCell wall/membrane/envelope biogenesis [M] 1.92
COG4953Membrane carboxypeptidase/penicillin-binding protein PbpCCell wall/membrane/envelope biogenesis [M] 1.92
COG19022,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) familyEnergy production and conversion [C] 0.96
COG5441ATP-binding helicase-inhibiting domain, Tm-1/UPF0261 familyDefense mechanisms [V] 0.96
COG0782Transcription elongation factor, GreA/GreB familyTranscription [K] 0.96
COG1344Flagellin and related hook-associated protein FlgLCell motility [N] 0.96
COG1549Archaeosine tRNA-ribosyltransferase, contains uracil-DNA-glycosylase and PUA domainsTranslation, ribosomal structure and biogenesis [J] 0.96
COG1721Uncharacterized conserved protein, DUF58 family, contains vWF domainFunction unknown [S] 0.96
COG5319Uncharacterized conserved protein, DUF1178 domainFunction unknown [S] 0.96
COG1859RNA:NAD 2'-phosphotransferase, TPT1/KptA familyTranslation, ribosomal structure and biogenesis [J] 0.96
COG1884Methylmalonyl-CoA mutase, N-terminal domain/subunitLipid transport and metabolism [I] 0.96
COG19954-hydroxy-L-threonine phosphate dehydrogenase PdxACoenzyme transport and metabolism [H] 0.96
COG0701Uncharacterized membrane protein YraQ, UPF0718 familyFunction unknown [S] 0.96
COG2027D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.96
COG2253Predicted nucleotidyltransferase component of viral defense systemDefense mechanisms [V] 0.96
COG3303Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunitInorganic ion transport and metabolism [P] 0.96
COG45025'(3')-deoxyribonucleotidaseNucleotide transport and metabolism [F] 0.96
COG0171NH3-dependent NAD+ synthetaseCoenzyme transport and metabolism [H] 0.96
COG0042tRNA-dihydrouridine synthaseTranslation, ribosomal structure and biogenesis [J] 0.96
COG00433-polyprenyl-4-hydroxybenzoate decarboxylaseCoenzyme transport and metabolism [H] 0.96
COG00546,7-dimethyl-8-ribityllumazine synthase (Riboflavin synthase beta chain)Coenzyme transport and metabolism [H] 0.96
COG0060Isoleucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.96
COG0071Small heat shock protein IbpA, HSP20 familyPosttranslational modification, protein turnover, chaperones [O] 0.96
COG0105Nucleoside diphosphate kinaseNucleotide transport and metabolism [F] 0.96
COG0136Aspartate-semialdehyde dehydrogenaseAmino acid transport and metabolism [E] 0.96
COG0143Methionyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.96
COG0002N-acetyl-gamma-glutamylphosphate reductaseAmino acid transport and metabolism [E] 0.96
COG0343Queuine/archaeosine tRNA-ribosyltransferaseTranslation, ribosomal structure and biogenesis [J] 0.96
COG0358DNA primase (bacterial type)Replication, recombination and repair [L] 0.96
COG0469Pyruvate kinaseCarbohydrate transport and metabolism [G] 0.96
COG0495Leucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.96
COG0525Valyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.96
COG0679Predicted permease, AEC (auxin efflux carrier) familyGeneral function prediction only [R] 0.96
COG0680Ni,Fe-hydrogenase maturation factorEnergy production and conversion [C] 0.96


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms81.73 %
UnclassifiedrootN/A18.27 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005612|Ga0070723_10453419Not Available628Open in IMG/M
3300005832|Ga0074469_11002583All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae1794Open in IMG/M
3300005832|Ga0074469_11192120All Organisms → cellular organisms → Bacteria977Open in IMG/M
3300010392|Ga0118731_105720867All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae2034Open in IMG/M
3300010392|Ga0118731_108023005All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium824Open in IMG/M
3300014914|Ga0164311_10578861All Organisms → cellular organisms → Bacteria644Open in IMG/M
(restricted) 3300023112|Ga0233411_10000231All Organisms → cellular organisms → Bacteria18189Open in IMG/M
(restricted) 3300023112|Ga0233411_10000613All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria10703Open in IMG/M
(restricted) 3300023112|Ga0233411_10000781All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria9369Open in IMG/M
(restricted) 3300023112|Ga0233411_10001321All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS27241Open in IMG/M
(restricted) 3300023112|Ga0233411_10001640All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS26494Open in IMG/M
(restricted) 3300023112|Ga0233411_10001696All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria6362Open in IMG/M
(restricted) 3300023112|Ga0233411_10003738All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini4293Open in IMG/M
(restricted) 3300023112|Ga0233411_10006122All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3410Open in IMG/M
(restricted) 3300023112|Ga0233411_10007303All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3146Open in IMG/M
(restricted) 3300023112|Ga0233411_10020431Not Available1963Open in IMG/M
(restricted) 3300023112|Ga0233411_10021892All Organisms → cellular organisms → Bacteria1903Open in IMG/M
(restricted) 3300023112|Ga0233411_10049488Not Available1306Open in IMG/M
(restricted) 3300023112|Ga0233411_10062034All Organisms → cellular organisms → Bacteria1172Open in IMG/M
(restricted) 3300023112|Ga0233411_10112795All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria874Open in IMG/M
(restricted) 3300023210|Ga0233412_10000251All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria31931Open in IMG/M
(restricted) 3300023210|Ga0233412_10000972All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria15720Open in IMG/M
(restricted) 3300023210|Ga0233412_10001161All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae14167Open in IMG/M
(restricted) 3300023210|Ga0233412_10001231All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS213672Open in IMG/M
(restricted) 3300023210|Ga0233412_10001865All Organisms → cellular organisms → Bacteria → Proteobacteria10592Open in IMG/M
(restricted) 3300023210|Ga0233412_10001963All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria10255Open in IMG/M
(restricted) 3300023210|Ga0233412_10002183All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS29666Open in IMG/M
(restricted) 3300023210|Ga0233412_10002869All Organisms → cellular organisms → Bacteria8178Open in IMG/M
(restricted) 3300023210|Ga0233412_10003954All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS26714Open in IMG/M
(restricted) 3300023210|Ga0233412_10004526All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria6175Open in IMG/M
(restricted) 3300023210|Ga0233412_10005114All Organisms → cellular organisms → Bacteria5742Open in IMG/M
(restricted) 3300023210|Ga0233412_10008325All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria4272Open in IMG/M
(restricted) 3300023210|Ga0233412_10013431All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3264Open in IMG/M
(restricted) 3300023210|Ga0233412_10014188All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3174Open in IMG/M
(restricted) 3300023210|Ga0233412_10016069All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes2970Open in IMG/M
(restricted) 3300023210|Ga0233412_10016931All Organisms → cellular organisms → Bacteria2890Open in IMG/M
(restricted) 3300023210|Ga0233412_10019747All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2676Open in IMG/M
(restricted) 3300023210|Ga0233412_10025829All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2342Open in IMG/M
(restricted) 3300023210|Ga0233412_10081824All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1341Open in IMG/M
(restricted) 3300023210|Ga0233412_10107485Not Available1175Open in IMG/M
(restricted) 3300023210|Ga0233412_10116934All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales1127Open in IMG/M
(restricted) 3300023210|Ga0233412_10139334All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1034Open in IMG/M
(restricted) 3300023210|Ga0233412_10176116All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium922Open in IMG/M
(restricted) 3300023210|Ga0233412_10228587Not Available811Open in IMG/M
(restricted) 3300023210|Ga0233412_10266278All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → unclassified Desulfobulbaceae → Desulfobulbaceae bacterium752Open in IMG/M
(restricted) 3300023276|Ga0233410_10000307All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria16666Open in IMG/M
(restricted) 3300023276|Ga0233410_10000770All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria9367Open in IMG/M
(restricted) 3300023276|Ga0233410_10000855All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae8828Open in IMG/M
(restricted) 3300023276|Ga0233410_10001846All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS25848Open in IMG/M
(restricted) 3300023276|Ga0233410_10005447All Organisms → cellular organisms → Bacteria3421Open in IMG/M
(restricted) 3300023276|Ga0233410_10006726All Organisms → cellular organisms → Bacteria → Proteobacteria3085Open in IMG/M
(restricted) 3300023276|Ga0233410_10008875All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2706Open in IMG/M
(restricted) 3300023276|Ga0233410_10018923Not Available1932Open in IMG/M
(restricted) 3300023276|Ga0233410_10019456All Organisms → cellular organisms → Bacteria1909Open in IMG/M
(restricted) 3300023276|Ga0233410_10019688All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1899Open in IMG/M
(restricted) 3300023276|Ga0233410_10024920All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1712Open in IMG/M
(restricted) 3300023276|Ga0233410_10066070All Organisms → cellular organisms → Bacteria1094Open in IMG/M
(restricted) 3300023276|Ga0233410_10073650All Organisms → cellular organisms → Bacteria1039Open in IMG/M
(restricted) 3300023276|Ga0233410_10079239All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1004Open in IMG/M
(restricted) 3300023276|Ga0233410_10088244All Organisms → cellular organisms → Bacteria → Proteobacteria954Open in IMG/M
(restricted) 3300023276|Ga0233410_10185617All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria664Open in IMG/M
3300027822|Ga0209633_10232241All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales974Open in IMG/M
3300027858|Ga0209013_10493095All Organisms → cellular organisms → Bacteria661Open in IMG/M
(restricted) 3300027861|Ga0233415_10012697Not Available3312Open in IMG/M
(restricted) 3300027861|Ga0233415_10053940All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1690Open in IMG/M
(restricted) 3300027861|Ga0233415_10148106All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1063Open in IMG/M
(restricted) 3300027861|Ga0233415_10186099Not Available953Open in IMG/M
(restricted) 3300027861|Ga0233415_10256880All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium817Open in IMG/M
(restricted) 3300027861|Ga0233415_10295531Not Available763Open in IMG/M
(restricted) 3300027861|Ga0233415_10335622All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum magnetotacticum717Open in IMG/M
(restricted) 3300027996|Ga0233413_10001070All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria12327Open in IMG/M
(restricted) 3300027996|Ga0233413_10002056All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria8553Open in IMG/M
(restricted) 3300027996|Ga0233413_10002192All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria8251Open in IMG/M
(restricted) 3300027996|Ga0233413_10003107All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria6853Open in IMG/M
(restricted) 3300027996|Ga0233413_10008973All Organisms → cellular organisms → Bacteria3770Open in IMG/M
(restricted) 3300027996|Ga0233413_10009172All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini3729Open in IMG/M
(restricted) 3300027996|Ga0233413_10011905All Organisms → cellular organisms → Bacteria3249Open in IMG/M
(restricted) 3300027996|Ga0233413_10014221All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes2959Open in IMG/M
(restricted) 3300027996|Ga0233413_10021036All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS22434Open in IMG/M
(restricted) 3300027996|Ga0233413_10027427All Organisms → cellular organisms → Bacteria2140Open in IMG/M
(restricted) 3300027996|Ga0233413_10143036Not Available986Open in IMG/M
(restricted) 3300027996|Ga0233413_10231759All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria782Open in IMG/M
(restricted) 3300027996|Ga0233413_10365729All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium627Open in IMG/M
(restricted) 3300027996|Ga0233413_10497318All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium539Open in IMG/M
(restricted) 3300027996|Ga0233413_10575168All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium503Open in IMG/M
(restricted) 3300028045|Ga0233414_10000837All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae12271Open in IMG/M
(restricted) 3300028045|Ga0233414_10003841All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria5765Open in IMG/M
(restricted) 3300028045|Ga0233414_10018914All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS22686Open in IMG/M
(restricted) 3300028045|Ga0233414_10019285All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2663Open in IMG/M
(restricted) 3300028045|Ga0233414_10023731All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2425Open in IMG/M
(restricted) 3300028045|Ga0233414_10048197All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1748Open in IMG/M
(restricted) 3300028045|Ga0233414_10060425All Organisms → cellular organisms → Bacteria1577Open in IMG/M
(restricted) 3300028045|Ga0233414_10062970Not Available1548Open in IMG/M
(restricted) 3300028045|Ga0233414_10084645Not Available1351Open in IMG/M
(restricted) 3300028045|Ga0233414_10090350Not Available1310Open in IMG/M
(restricted) 3300028045|Ga0233414_10132361Not Available1094Open in IMG/M
(restricted) 3300028045|Ga0233414_10150354All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1029Open in IMG/M
(restricted) 3300028045|Ga0233414_10173121All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacterales incertae sedis → Candidatus Desulfatibia → Candidatus Desulfatibia profunda961Open in IMG/M
(restricted) 3300028045|Ga0233414_10298556Not Available738Open in IMG/M
(restricted) 3300028045|Ga0233414_10333888Not Available698Open in IMG/M
3300031539|Ga0307380_10439854All Organisms → cellular organisms → Bacteria1164Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater91.35%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine1.92%
MarineEnvironmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine1.92%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)1.92%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment0.96%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.96%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.96%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005612Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2EnvironmentalOpen in IMG/M
3300005832Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBBEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300014914Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay2, Core 4569-9, 9-12 cmEnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300023276 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_1_MGEnvironmentalOpen in IMG/M
3300027822Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 1 (SPAdes)EnvironmentalOpen in IMG/M
3300027858Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300027996 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MGEnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ga0070723_1045341913300005612Marine SedimentVVIPAKAGIQKDTGCRIKSGMTGIGYLVAGLISCKL*
Ga0074469_1100258313300005832Sediment (Intertidal)YLNIVIPPRIGVRDDDQAGIQVGTGCRIKSGMTELPYLVAGLICRLEIETR*
Ga0074469_1119212023300005832Sediment (Intertidal)PATKYLKVVIPAEAGIQAGTGCRIKSGMTEMACLITGLII*
Ga0118731_10572086713300010392MarineLNSSNPISITPAIKYVTVVIPAKVGIQKDTGCRIMSGMTGFGYLVA
Ga0118731_10802300523300010392MarineATVVIPAKAGIQKDTGCRIMSGMTGFSYLVAGLITQ*
Ga0164311_1057886123300014914Marine SedimentVFDINPAIKYLPIVIPAKAGIQEYTGCRIKSGMTEVAYLIAGLIFK
(restricted) Ga0233411_10000231163300023112SeawaterTPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLIARLIVNI
(restricted) Ga0233411_10000613103300023112SeawaterIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLI
(restricted) Ga0233411_10000781113300023112SeawaterITLAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLIPSL
(restricted) Ga0233411_1000132173300023112SeawaterITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLIL
(restricted) Ga0233411_1000164063300023112SeawaterMGIITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLI
(restricted) Ga0233411_1000169673300023112SeawaterDITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLIY
(restricted) Ga0233411_1000373813300023112SeawaterSIAEGLRALIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLI
(restricted) Ga0233411_1000612213300023112SeawaterLHDNITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLIARLI
(restricted) Ga0233411_1000730343300023112SeawaterTPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLIARLINN
(restricted) Ga0233411_1001547343300023112SeawaterITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLI
(restricted) Ga0233411_1002043113300023112SeawaterAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLI
(restricted) Ga0233411_1002189213300023112SeawaterVPQICDITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLI
(restricted) Ga0233411_1004948833300023112SeawaterSRYVFNITPAIKYLNIVIPAKAGIQAGTGCRIKSGMTELDYLIARLIL
(restricted) Ga0233411_1006203423300023112SeawaterPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLI
(restricted) Ga0233411_1011279513300023112SeawaterNIVIPAKAGIQEGTGCRIKSGMTELEYLVARLIKTANQRKV
(restricted) Ga0233412_10000251273300023210SeawaterNIVIPAKAGIQVGTGCRIKSGMTELDYLIARLIVNI
(restricted) Ga0233412_1000097213300023210SeawaterITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLII
(restricted) Ga0233412_10001161133300023210SeawaterITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLICP
(restricted) Ga0233412_10001231123300023210SeawaterITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLI
(restricted) Ga0233412_1000186513300023210SeawaterLLFQTDITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLI
(restricted) Ga0233412_10001963143300023210SeawaterITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLIARLINPAVMT
(restricted) Ga0233412_1000218313300023210SeawaterLITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLI
(restricted) Ga0233412_10002869123300023210SeawaterLRPIKYLNIVIPAKAGIQVGTGCRIKSGMTELEYLVARLIFFQNLF
(restricted) Ga0233412_1000395493300023210SeawaterITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLIIHL
(restricted) Ga0233412_1000452613300023210SeawaterTPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLIIKKHLDVEK
(restricted) Ga0233412_1000511413300023210SeawaterLSQLNITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLI
(restricted) Ga0233412_1000832513300023210SeawaterDITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLIARLIQ
(restricted) Ga0233412_1001343113300023210SeawaterLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLILPGV
(restricted) Ga0233412_1001418833300023210SeawaterMGKDEFITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLV
(restricted) Ga0233412_1001606933300023210SeawaterITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLIYALQKKM
(restricted) Ga0233412_1001693113300023210SeawaterHITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLIARLIS
(restricted) Ga0233412_1001974743300023210SeawaterDITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLIL
(restricted) Ga0233412_1002582913300023210SeawaterVITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLIARLISYLVLLQ
(restricted) Ga0233412_1008182413300023210SeawaterNITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLI
(restricted) Ga0233412_1010748533300023210SeawaterDDPRTFINITPAIKYLNIVIPAKAGIQESTGCRIKSGMTELDYLIARLI
(restricted) Ga0233412_1011693413300023210SeawaterKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLI
(restricted) Ga0233412_1013933413300023210SeawaterTPAIKYLSIVIPAKAGIQVGTGCRIKSGMTELDYLIARLIICFTG
(restricted) Ga0233412_1017611623300023210SeawaterMGKDEFITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVVRLI
(restricted) Ga0233412_1022858723300023210SeawaterTPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLIIK
(restricted) Ga0233412_1026627813300023210SeawaterFFFFHFSPFIFCFNVTPAIQYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLILS
(restricted) Ga0233410_1000030713300023276SeawaterSVYITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLIAMLFMQL
(restricted) Ga0233410_1000077013300023276SeawaterNITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLIPSL
(restricted) Ga0233410_1000085523300023276SeawaterMETINPAIKYLNIVIPAKAGIQAGTGCRIKSGMTELDYLIARLIL
(restricted) Ga0233410_1000184663300023276SeawaterFTGIIITPAIKYLNIVIPAKAGIQEGAGCRIKFGMTELDYLAARLI
(restricted) Ga0233410_1000544753300023276SeawaterITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLIIIF
(restricted) Ga0233410_1000672613300023276SeawaterLNVITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLIAR
(restricted) Ga0233410_1000887543300023276SeawaterPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLIIQNKL
(restricted) Ga0233410_1001892333300023276SeawaterAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLISRVQR
(restricted) Ga0233410_1001945643300023276SeawaterTPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLIARLIFRVIV
(restricted) Ga0233410_1001968833300023276SeawaterITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLILPGV
(restricted) Ga0233410_1002492013300023276SeawaterYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLIL
(restricted) Ga0233410_1006607013300023276SeawaterAIKYPNIVIPAKAGIQVGTGCRIKSGMTELDYLIARLISKTMQ
(restricted) Ga0233410_1007365023300023276SeawaterKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLILLRF
(restricted) Ga0233410_1007923913300023276SeawaterTPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLILIDFSLKKR
(restricted) Ga0233410_1008824413300023276SeawaterPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLIL
(restricted) Ga0233410_1018561713300023276SeawaterNITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLIRTRRAT
Ga0209633_1023224113300027822MarineKTVFVRASNINPAIKYLPIVIPAKAGIQEYTGCRIKSGMTEVVYLIAGLIFK
Ga0209013_1049309513300027858MarineGNSSISTDITLAVKYLKVVIPAEAGIQKNTGCRIKSGMTEFGYLLAGLITL
(restricted) Ga0233415_1001269743300027861SeawaterIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLILRH
(restricted) Ga0233415_1005394033300027861SeawaterMEGISSTLLHITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARL
(restricted) Ga0233415_1014810613300027861SeawaterLCLFESPFFIITPAIKYLNIVIPAKAGIQEGTGCRIKSGITELDYLIARLI
(restricted) Ga0233415_1018609913300027861SeawaterIVIPAKAGIQEGTGCRIKSGMTELDYLVARLIFFQTS
(restricted) Ga0233415_1025688013300027861SeawaterITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELEYLIARLI
(restricted) Ga0233415_1029553113300027861SeawaterLLLISITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLIARL
(restricted) Ga0233415_1033562213300027861SeawaterIPAKAGIQEGTGCRIKSGMTELDYLIARLITTKEMEK
(restricted) Ga0233413_10001070143300027996SeawaterMKEYITPAIKYLDIVIPAKAGIQVGTGCRIKSGMTELDYLVARLIIIF
(restricted) Ga0233413_1000205613300027996SeawaterIITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLIFRQYISS
(restricted) Ga0233413_1000219293300027996SeawaterTPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLIY
(restricted) Ga0233413_1000310743300027996SeawaterLITPAIKYLNIVIPAKAGIQEGAGCRIKSGMTELDYLIARLILLRF
(restricted) Ga0233413_1000897353300027996SeawaterKYLNIVIPAKAGIQEGTGCRIKSGMTELEYLVARLI
(restricted) Ga0233413_1000917263300027996SeawaterIVIPAKAGIQVGTGCRIKSGMTELDYLIARLINPAVMT
(restricted) Ga0233413_1001190553300027996SeawaterYITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLIFKI
(restricted) Ga0233413_1001422113300027996SeawaterAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLIYALQKKM
(restricted) Ga0233413_1002103613300027996SeawaterNITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLIHRFN
(restricted) Ga0233413_1002742783300027996SeawaterAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLIARLIR
(restricted) Ga0233413_1014303613300027996SeawaterLNVITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVA
(restricted) Ga0233413_1023175913300027996SeawaterITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLIFYTTLGLSIN
(restricted) Ga0233413_1036572913300027996SeawaterSVITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLIARLTF
(restricted) Ga0233413_1049731813300027996SeawaterTPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLIRXN
(restricted) Ga0233413_1057516813300027996SeawaterLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLIVKPAD
(restricted) Ga0233414_1000083713300028045SeawaterNITPAIKYLNIVIPAKAGIQEGTGCRIKSGITELDYLIARLILYVS
(restricted) Ga0233414_1000384113300028045SeawaterIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLII
(restricted) Ga0233414_1001891413300028045SeawaterIVIPAKAGIQVGTGCRIKSGMTELDYLVARLIIQNKL
(restricted) Ga0233414_1001928543300028045SeawaterVRNDITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLI
(restricted) Ga0233414_1002373143300028045SeawaterCIITPAIKYLNIVIPAKAGIQEGAGCRIKSGMTELDYLVARLISNH
(restricted) Ga0233414_1004819713300028045SeawaterITPAIKYLNIVIPAKAGIQEGTGCWIKSGMTELDYLVARLIL
(restricted) Ga0233414_1006042513300028045SeawaterIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYSVARLIIP
(restricted) Ga0233414_1006297013300028045SeawaterLNVITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLI
(restricted) Ga0233414_1006803823300028045SeawaterTPAIKYLNIGIPAKAGIQEGTGCRIKSGMTELDYLIARLI
(restricted) Ga0233414_1008013223300028045SeawaterILFIDITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDI
(restricted) Ga0233414_1008464523300028045SeawaterIVIPAKAGIQVGTGCRIKSGMTELDYLVARLIKSVFIPDQ
(restricted) Ga0233414_1009035023300028045SeawaterITPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLIIK
(restricted) Ga0233414_1013236123300028045SeawaterLHDNITPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVA
(restricted) Ga0233414_1015035433300028045SeawaterFITSAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLIARLIISGTLPDH
(restricted) Ga0233414_1017312123300028045SeawaterTPAIKYLNIVIPAKAGIQVGTGCRIKSGMTELDYLVARLI
(restricted) Ga0233414_1029855613300028045SeawaterYLDIVIPAKAGIQEGTGCRIKSGMTELDYLIARLIPSFF
(restricted) Ga0233414_1033388813300028045SeawaterYNIIPAIKYLNIVIPAKAGIQEGTGCRIKSGMTELDYLVARLIKDETKN
Ga0307380_1043985413300031539SoilYVNIVIPAKAGIQVGTGCRIKSGMTQLPYLVAGLITAA


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