NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F096291

Metagenome Family F096291

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F096291
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 42 residues
Representative Sequence LLWSFVYLVVRNLFALVWLLGRPRRSKELEILVLRHELAILR
Number of Associated Samples 70
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 80.95 %
% of genes near scaffold ends (potentially truncated) 88.57 %
% of genes from short scaffolds (< 2000 bps) 85.71 %
Associated GOLD sequencing projects 70
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (80.952 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(48.571 % of family members)
Environment Ontology (ENVO) Unclassified
(54.286 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(55.238 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 48.57%    β-sheet: 0.00%    Coil/Unstructured: 51.43%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF13683rve_3 2.86
PF00211Guanylate_cyc 1.90
PF12840HTH_20 1.90
PF00067p450 0.95
PF13411MerR_1 0.95
PF06348DUF1059 0.95
PF00109ketoacyl-synt 0.95
PF08924DUF1906 0.95
PF12773DZR 0.95
PF02535Zip 0.95
PF13686DrsE_2 0.95
PF00990GGDEF 0.95
PF07676PD40 0.95
PF00082Peptidase_S8 0.95
PF06723MreB_Mbl 0.95
PF13649Methyltransf_25 0.95
PF07690MFS_1 0.95
PF13231PMT_2 0.95
PF04185Phosphoesterase 0.95
PF01527HTH_Tnp_1 0.95
PF01915Glyco_hydro_3_C 0.95
PF13407Peripla_BP_4 0.95
PF00078RVT_1 0.95
PF00072Response_reg 0.95
PF13191AAA_16 0.95
PF05532CsbD 0.95
PF00582Usp 0.95
PF00196GerE 0.95
PF07452CHRD 0.95
PF01329Pterin_4a 0.95
PF01734Patatin 0.95
PF00583Acetyltransf_1 0.95
PF05974DUF892 0.95
PF01656CbiA 0.95
PF00027cNMP_binding 0.95
PF13565HTH_32 0.95
PF07705CARDB 0.95
PF01609DDE_Tnp_1 0.95
PF00665rve 0.95
PF13360PQQ_2 0.95
PF00872Transposase_mut 0.95
PF00589Phage_integrase 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 1.90
COG3293TransposaseMobilome: prophages, transposons [X] 0.95
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 0.95
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 0.95
COG5421TransposaseMobilome: prophages, transposons [X] 0.95
COG4667Predicted phospholipase, patatin/cPLA2 familyLipid transport and metabolism [I] 0.95
COG4584TransposaseMobilome: prophages, transposons [X] 0.95
COG3685Ferritin-like metal-binding protein YciEInorganic ion transport and metabolism [P] 0.95
COG3621Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotRGeneral function prediction only [R] 0.95
COG3511Phospholipase CCell wall/membrane/envelope biogenesis [M] 0.95
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 0.95
COG3328Transposase (or an inactivated derivative)Mobilome: prophages, transposons [X] 0.95
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 0.95
COG0428Zinc transporter ZupTInorganic ion transport and metabolism [P] 0.95
COG3237Uncharacterized conserved protein YjbJ, UPF0337 familyFunction unknown [S] 0.95
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 0.95
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 0.95
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 0.95
COG2154Pterin-4a-carbinolamine dehydrataseCoenzyme transport and metabolism [H] 0.95
COG2124Cytochrome P450Defense mechanisms [V] 0.95
COG1752Predicted acylesterase/phospholipase RssA, containd patatin domainGeneral function prediction only [R] 0.95
COG1472Periplasmic beta-glucosidase and related glycosidasesCarbohydrate transport and metabolism [G] 0.95
COG1077Cell shape-determining ATPase MreB, actin-like superfamilyCell cycle control, cell division, chromosome partitioning [D] 0.95

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms80.95 %
UnclassifiedrootN/A19.05 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908045|KansclcFeb2_ConsensusfromContig116753Not Available624Open in IMG/M
2140918007|ConsensusfromContig27119All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis lurida641Open in IMG/M
2140918024|NODE_299558_length_631_cov_8.049129All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis mediterranei681Open in IMG/M
3300000955|JGI1027J12803_103456202All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300000956|JGI10216J12902_102985158All Organisms → cellular organisms → Bacteria1393Open in IMG/M
3300000956|JGI10216J12902_112769086All Organisms → cellular organisms → Bacteria817Open in IMG/M
3300001532|A20PFW1_1716266All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis balhimycina557Open in IMG/M
3300001535|A3PFW1_10281288All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta1494Open in IMG/M
3300001536|A1565W1_10754713All Organisms → cellular organisms → Bacteria608Open in IMG/M
3300001536|A1565W1_10963493Not Available1093Open in IMG/M
3300001537|A2065W1_11027400All Organisms → cellular organisms → Bacteria1154Open in IMG/M
3300005471|Ga0070698_100303530All Organisms → cellular organisms → Bacteria1527Open in IMG/M
3300005538|Ga0070731_10020164All Organisms → cellular organisms → Bacteria4627Open in IMG/M
3300005561|Ga0066699_10313680All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1118Open in IMG/M
3300005569|Ga0066705_10178187All Organisms → cellular organisms → Bacteria1321Open in IMG/M
3300005598|Ga0066706_11205992All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. PRh5575Open in IMG/M
3300005947|Ga0066794_10100660All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300006852|Ga0075433_10718667All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia874Open in IMG/M
3300006854|Ga0075425_100228337All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2142Open in IMG/M
3300006865|Ga0073934_10249306All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1167Open in IMG/M
3300009090|Ga0099827_10195650Not Available1679Open in IMG/M
3300009101|Ga0105247_10727360Not Available750Open in IMG/M
3300009137|Ga0066709_101281005All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1076Open in IMG/M
3300009137|Ga0066709_103328894All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia584Open in IMG/M
3300009817|Ga0105062_1058988All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia714Open in IMG/M
3300009840|Ga0126313_10238495All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1407Open in IMG/M
3300010040|Ga0126308_10475504All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia842Open in IMG/M
3300010040|Ga0126308_11350518All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium506Open in IMG/M
3300010041|Ga0126312_10975139All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium620Open in IMG/M
3300010042|Ga0126314_11010473All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium617Open in IMG/M
3300010301|Ga0134070_10365974All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium562Open in IMG/M
3300011271|Ga0137393_10955958All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium730Open in IMG/M
3300011991|Ga0120153_1057774All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium693Open in IMG/M
3300011994|Ga0120157_1018961All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1684Open in IMG/M
3300011997|Ga0120162_1036440Not Available1312Open in IMG/M
3300012011|Ga0120152_1159618All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium590Open in IMG/M
3300012014|Ga0120159_1035326All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1685Open in IMG/M
3300012096|Ga0137389_11351463Not Available607Open in IMG/M
3300012198|Ga0137364_11134891All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300012201|Ga0137365_10354649All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1084Open in IMG/M
3300012201|Ga0137365_10660091All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium765Open in IMG/M
3300012201|Ga0137365_10709532Not Available735Open in IMG/M
3300012204|Ga0137374_10086601All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3010Open in IMG/M
3300012204|Ga0137374_10108068All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2599Open in IMG/M
3300012204|Ga0137374_10136787All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2218Open in IMG/M
3300012204|Ga0137374_10197867All Organisms → cellular organisms → Bacteria → Terrabacteria group1735Open in IMG/M
3300012204|Ga0137374_10425117All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae1049Open in IMG/M
3300012204|Ga0137374_10670846All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia782Open in IMG/M
3300012204|Ga0137374_11019612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia596Open in IMG/M
3300012206|Ga0137380_10550909Not Available1012Open in IMG/M
3300012206|Ga0137380_11324429Not Available605Open in IMG/M
3300012208|Ga0137376_11626905All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia537Open in IMG/M
3300012209|Ga0137379_11358976All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia615Open in IMG/M
3300012209|Ga0137379_11714182All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia525Open in IMG/M
3300012209|Ga0137379_11720731All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia523Open in IMG/M
3300012210|Ga0137378_10721268All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium908Open in IMG/M
3300012210|Ga0137378_11826636All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia511Open in IMG/M
3300012211|Ga0137377_11015567Not Available760Open in IMG/M
3300012349|Ga0137387_11110505All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia563Open in IMG/M
3300012350|Ga0137372_10128557All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis lexingtonensis2091Open in IMG/M
3300012350|Ga0137372_10137413All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2008Open in IMG/M
3300012350|Ga0137372_10824151All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium664Open in IMG/M
3300012350|Ga0137372_11217239Not Available507Open in IMG/M
3300012351|Ga0137386_11212201All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia527Open in IMG/M
3300012353|Ga0137367_10191735All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1483Open in IMG/M
3300012353|Ga0137367_10234495Not Available1322Open in IMG/M
3300012353|Ga0137367_10239229All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1307Open in IMG/M
3300012354|Ga0137366_10555285All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia826Open in IMG/M
3300012354|Ga0137366_10602559All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria788Open in IMG/M
3300012355|Ga0137369_10044662All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3931Open in IMG/M
3300012355|Ga0137369_10053959All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3499Open in IMG/M
3300012355|Ga0137369_10180046All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1653Open in IMG/M
3300012355|Ga0137369_10188718All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1604Open in IMG/M
3300012355|Ga0137369_10301598Not Available1188Open in IMG/M
3300012356|Ga0137371_10780460All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia729Open in IMG/M
3300012358|Ga0137368_10063562All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium3034Open in IMG/M
3300012358|Ga0137368_10877994All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia548Open in IMG/M
3300012359|Ga0137385_10228265All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1618Open in IMG/M
3300012360|Ga0137375_10092152All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3118Open in IMG/M
3300012360|Ga0137375_10236628All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1697Open in IMG/M
3300012360|Ga0137375_10319503All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1394Open in IMG/M
3300012360|Ga0137375_10672723All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria850Open in IMG/M
3300012360|Ga0137375_11034664All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia643Open in IMG/M
3300012360|Ga0137375_11360214Not Available532Open in IMG/M
3300012532|Ga0137373_10083781All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae2832Open in IMG/M
3300012532|Ga0137373_10809560All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia692Open in IMG/M
3300012915|Ga0157302_10146307All Organisms → cellular organisms → Bacteria798Open in IMG/M
3300012976|Ga0134076_10486002All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia562Open in IMG/M
3300013768|Ga0120155_1114401All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium747Open in IMG/M
3300014031|Ga0120173_1042126Not Available658Open in IMG/M
3300014157|Ga0134078_10609800All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter524Open in IMG/M
3300014827|Ga0120171_1027512All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2052Open in IMG/M
3300015359|Ga0134085_10579611Not Available520Open in IMG/M
3300015373|Ga0132257_103393799Not Available580Open in IMG/M
3300015373|Ga0132257_103810293All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium549Open in IMG/M
3300018061|Ga0184619_10040487All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2000Open in IMG/M
3300018429|Ga0190272_10935527All Organisms → cellular organisms → Bacteria818Open in IMG/M
3300022756|Ga0222622_11171184Not Available566Open in IMG/M
3300025457|Ga0208850_1050413All Organisms → cellular organisms → Bacteria690Open in IMG/M
3300026272|Ga0209913_1000654All Organisms → cellular organisms → Bacteria26452Open in IMG/M
3300026307|Ga0209469_1134160All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia565Open in IMG/M
3300027056|Ga0209879_1069362All Organisms → cellular organisms → Bacteria559Open in IMG/M
3300027561|Ga0209887_1056954Not Available832Open in IMG/M
3300027561|Ga0209887_1069299Not Available737Open in IMG/M
3300032002|Ga0307416_100334476All Organisms → cellular organisms → Bacteria1524Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil48.57%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost12.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.62%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil4.76%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil3.81%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand3.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil1.90%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.90%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil1.90%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.90%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.90%
Hot Spring SedimentEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment0.95%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.95%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.95%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.95%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.95%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.95%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.95%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.95%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908045Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011EnvironmentalOpen in IMG/M
2140918007Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_allEnvironmentalOpen in IMG/M
2140918024Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_allEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001532Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-PF 12A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001535Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001536Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001537Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005947Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006865Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009817Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010041Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104AEnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300011991Permafrost microbial communities from Nunavut, Canada - A34_65cm_12MEnvironmentalOpen in IMG/M
3300011994Permafrost microbial communities from Nunavut, Canada - A7_65cm_12MEnvironmentalOpen in IMG/M
3300011997Permafrost microbial communities from Nunavut, Canada - A15_80cm_18MEnvironmentalOpen in IMG/M
3300012011Permafrost microbial communities from Nunavut, Canada - A30_65cm_6MEnvironmentalOpen in IMG/M
3300012014Permafrost microbial communities from Nunavut, Canada - A10_80cm_6MEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2EnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300013768Permafrost microbial communities from Nunavut, Canada - A35_65cm_0MEnvironmentalOpen in IMG/M
3300014031Permafrost microbial communities from Nunavut, Canada - A35_80cm_0.25MEnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300014827Permafrost microbial communities from Nunavut, Canada - A3_80cm_18MEnvironmentalOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025457Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300026272Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203 (SPAdes)EnvironmentalOpen in IMG/M
3300026307Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)EnvironmentalOpen in IMG/M
3300027056Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027561Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
KansclcFeb2_123483302124908045SoilLVEEGCLLWSFAYLAVRNLFALVWLLARPRRSKELEILVLR
A_all_C_000776602140918007SoilLLWSLAYLVVRNLFALVWLLGRQRGSKELEILVLRHELAVLR
B_all_v_017547402140918024SoilLLWSLAYLVVRNLFALVWLLGRQRGSKELEILVLRHELAVLRR
JGI1027J12803_10345620233300000955SoilLLWSFAYLVVRNLFALVWLLARPRRSKELEILVLRHELAMLR
JGI10216J12902_10298515813300000956SoilVVWSFFYLSVRSLFALALLLGRSDRSKDVEILVLR
JGI10216J12902_11276908613300000956SoilLLWSLVYLVVRNLFALVWLLGRRRRSKELEILVLRHELAI
A20PFW1_171626613300001532PermafrostLLWSFAYVVVRGLLSLVVLFGRSSGSNELEILVLRHELA
A3PFW1_1028128843300001535PermafrostLLWSFAYLTVRSLFALVLLTGRSRRSKELEILVLRHELAVLRRQS
A1565W1_1075471323300001536PermafrostLLWSFVYLVVRNLFALVWLLARPRRSKELEILALRHE
A1565W1_1096349313300001536PermafrostVFWSLAYLVVRRLFEAMMLCCRSPRSKELEILVLRHELSILRRH
A2065W1_1102740033300001537PermafrostLLWSFVYLVVRNLFALVWLLGRPRRSLELEILVLRHELEIFRR
Ga0070698_10030353033300005471Corn, Switchgrass And Miscanthus RhizosphereLLWSFAYLAVRNLFALVWLLARPRRSNELEILVLRHELAMLRR*
Ga0070731_1002016413300005538Surface SoilLLWALVYLVVRSLFALVFLAGRSGPSKELEILVLR
Ga0066699_1031368013300005561SoilLLWSLVYLVVRNLRSLVWLLARPRRSRELEILVLRHEL
Ga0066705_1017818713300005569SoilLLWSFLYLVVRNLFALVWLLGRPRRSKELEILVLRHELAVLRRQ
Ga0066706_1120599213300005598SoilLPWSFVYLVVRNLFALVWLLGRPRRSKELEILVLRHELAILRRQAS
Ga0066794_1010066023300005947SoilLLWSFVYLVVRNLFALVWLLGRPRRSKELEILVLRHELAILR*
Ga0075433_1071866723300006852Populus RhizosphereLLWSFVYLVVRNLFALVWLLARPRRSKELEILVLRHELA
Ga0075425_10022833713300006854Populus RhizosphereLFWSFVYLVVRNLFALVWLLARPRRSNELEIPVPRHELAVLRRQRARPKLPTLIAHC*
Ga0073934_1024930633300006865Hot Spring SedimentVFWSFLYIAVRVFELAVLVARSERSKELEILVLRHELTILRRQAKRPP
Ga0099827_1019565013300009090Vadose Zone SoilLLWSFAYLVVRNLFVLAYLSAWPRRSKELEILVLRHELAILRRQAR
Ga0105247_1072736013300009101Switchgrass RhizosphereVYLVARNLFALVWWLGRQRRSKELEILVLRHELAIL
Ga0066709_10128100523300009137Grasslands SoilLLWSFVYLVVRNLFALVLLLGRRRRSKELGILVLRHELA
Ga0066709_10332889413300009137Grasslands SoilLLWSFVYLGVRNLFALVWLLGRPRRSKELEILVVRHELAILRRQSAP
Ga0105062_105898813300009817Groundwater SandLVWSFVYLVVRNLFALVWLLGRPRRSKELEILVLRHELAILRRQA
Ga0126313_1023849513300009840Serpentine SoilVVEEGYLFWSFAYLVVRNLFALVWLLGRPRRSKELEILVLRHELAIL
Ga0126308_1047550423300010040Serpentine SoilMYLVVRDLFALVWLLGRPRRSKELEILVLRHELSILRRRAFATAADAG*
Ga0126308_1135051823300010040Serpentine SoilLLWSLVYLVVRNLFAFVWLRARPRRSKELEILVLRPELWILRRR
Ga0126312_1097513913300010041Serpentine SoilLLWTFVYLMFRNLFALVWLLARPRRSKEFEILLLRHQLACAGMLAG*
Ga0126314_1101047323300010042Serpentine SoilVAWSFLYLAVRNVFALIVLLGRTDRSNELETLVLRHELAV
Ga0134070_1036597413300010301Grasslands SoilLLWSFLYLVVRNLFALVWLLGRRRRSKELEILVLRHKLAILRRQA
Ga0137393_1095595823300011271Vadose Zone SoilVVEEDCLLWSVAYLGVRNLFALVWLLARPRRSKEL
Ga0120153_105777423300011991PermafrostLLWSFVYLVVRNLFALVWLLARPRRSKELEILVLRHELAILRRQ
Ga0120157_101896113300011994PermafrostVYLVVRNLFALVWLLGRPRRSKELEILVLRHELAIL
Ga0120162_103644033300011997PermafrostLLWSFAYLAVRNLFALVLLVGRSRRSKELEILVLRHELAGLR
Ga0120152_115961823300012011PermafrostLPSIEEGSLLWAFVYLVVRNLFALVWLLARPRRSKECEILLLRHELA
Ga0120159_103532643300012014PermafrostLLWSFVYLVVRNLFALVWLLGRPRRSKEMEILVLR
Ga0137389_1135146323300012096Vadose Zone SoilLLWSCVYLVARNLFALVWLLARSRRSKELEIAVLRHELAVLRR
Ga0137364_1113489113300012198Vadose Zone SoilLLWSFAYLVVRNLFALVWLVARPRRSKELEILVLRHELAM
Ga0137365_1035464923300012201Vadose Zone SoilLFWSFAYLVARNRFALVWLLARPGRSKELEILVLRP
Ga0137365_1066009113300012201Vadose Zone SoilVAEEGCLLWSFVYLIVRNLFALVWLVGRRRRSKELEIRVPRTHEEVWM*
Ga0137365_1070953233300012201Vadose Zone SoilLLWSFAYVVVRGLLSLVVLFGRSSGSNELEILVLRHELAVLR
Ga0137374_1008660173300012204Vadose Zone SoilVYLVVRNLFALVWLLGRPRGSKELEILVLRHELAVLRRQ
Ga0137374_1010806813300012204Vadose Zone SoilMRNLFALVWLLGRPRGSKELEILVLRHELAVLRRQSARPRLT
Ga0137374_1013678713300012204Vadose Zone SoilLLWSFVYLVVRNLFALVWLLGRPRRSKELEILVLRHELAILRRQALAA*
Ga0137374_1019786733300012204Vadose Zone SoilLVLVEEGGCVVWSFVYLVVRNLFALVWLLGRPCRSKELEILVLRHE
Ga0137374_1042511723300012204Vadose Zone SoilLLWSFAYLVVRNLFALVWLLGRPRRSKKLEILVLRH
Ga0137374_1067084623300012204Vadose Zone SoilLLWSLVYLVVRNLFALVWLLGRPRRSKEMEILVLRHELAILRRQ
Ga0137374_1101961213300012204Vadose Zone SoilLLWSFVYLVVRNLFALVWLLGRPRRSKELEILVLRHELAILRRQ
Ga0137380_1055090913300012206Vadose Zone SoilLESIEGHLVWWFAYLAVHLFAFVVLFGRPRRSKELEILVL
Ga0137380_1132442913300012206Vadose Zone SoilLLWSFAYLVVRNLFALVYLLTRPHRSKELEILVLR
Ga0137376_1162690523300012208Vadose Zone SoilLLWSFVYLVVRNLFALVWLLGRPRRSKELEMLVLRHELAILGRQAAPSKP*
Ga0137379_1135897613300012209Vadose Zone SoilVPWSKEGRLLWSLVYLVVRNLFALVWLLGQPRRSKELEILILRHELAI
Ga0137379_1171418223300012209Vadose Zone SoilLLWSLVYLVVRNLFALVWLLGQPRRSKELEILILRHELAI
Ga0137379_1172073123300012209Vadose Zone SoilLLWSFAYLVVRNLFALACLLARPRRSKELEILVLRRELAICIAGTR*
Ga0137378_1072126823300012210Vadose Zone SoilLLWSFAYLVVRNLFALVCLLARQRRSKELEILVLRHELAILRRQARP
Ga0137378_1182663613300012210Vadose Zone SoilLLWSFVYLVVRNLFALVWLLGRRRRSKELEILVLRHE
Ga0137377_1101556723300012211Vadose Zone SoilLLWSFVYLIARNLFALVWLLARPRRSKEFEILLLRHELAVL
Ga0137387_1111050513300012349Vadose Zone SoilLLWSFVYLVVRNLFALVWLLGRPRRSKEMEILVLRHE
Ga0137372_1012855713300012350Vadose Zone SoilVQVVWSFFYLSVRNLFALVLLLGRSDRSKDVEILVLRH
Ga0137372_1013741323300012350Vadose Zone SoilLRWSFVYLVARNLFALVVLFGRRRRSKEVEILVLRHELAVLTGRLLGRG*
Ga0137372_1082415113300012350Vadose Zone SoilLLWSFVYLVVRNLFTLVWLLGRPRRSKELEILVLRH
Ga0137372_1121723913300012350Vadose Zone SoilVVWSFFYLSVRNLFALVLLLGRSDRSKDVEILVLRH
Ga0137386_1121220123300012351Vadose Zone SoilLLWSFMYLVVRNLFALGWLLGRPRRGQELEILVLR
Ga0137367_1019173513300012353Vadose Zone SoilVLWSFAYLVVRRLFQLIVICCRSSGSKELEILVLRHELSIL
Ga0137367_1023449513300012353Vadose Zone SoilVYLVVRNLFALVWLLGQSRRSKELEIRVPRTHEEVWM*
Ga0137367_1023922913300012353Vadose Zone SoilMVEGGCLLWSFVYLVVRNLFTLVWLLGRPRRSKELEILVLRHQLAILRRQS
Ga0137366_1055528533300012354Vadose Zone SoilLLWSFAYVVVRGLLSLVVLFGRSSGSNELEILVLRHE
Ga0137366_1060255923300012354Vadose Zone SoilLLWSFVYLIVRNLFALVWLLARRRCSKELEILVLRQELAILRRQRS
Ga0137369_1004466213300012355Vadose Zone SoilLIWSLAYLVVRNLFALVWLLARPRRSKELEILVLRHELAMLR
Ga0137369_1005395913300012355Vadose Zone SoilLLWSFVYLVVRNLFALVWLLGRPRRSKELEILVLRHELAILRRQAS
Ga0137369_1018004633300012355Vadose Zone SoilLLWSFVYLAVRTLFALVLLLAGSRRSKELEILLLRHELAILRRQTG
Ga0137369_1018871823300012355Vadose Zone SoilLLWSFAYLVVRNLFALVWLLARPRRSKELEILVLRH
Ga0137369_1030159813300012355Vadose Zone SoilVPSSREGSLLWSFVYLVVRNQFALMWLLARPRRSKELE
Ga0137371_1078046023300012356Vadose Zone SoilLLWSFAYLVVRNLFALVWLLARPRRSKELEILVLRHELALLRRRARPPRL
Ga0137368_1006356243300012358Vadose Zone SoilLLWSFAYLAVRNLFALVWLLARPRRSKELEILVLRHE
Ga0137368_1087799423300012358Vadose Zone SoilLLWSFVYLVVRNLFALVWLLARPRRSKELEILVLRHE
Ga0137385_1022826513300012359Vadose Zone SoilLVYLVVRNLFALVWLLGQPRRSKELEILILRHELAILRRQSS
Ga0137375_1009215213300012360Vadose Zone SoilMYLVMRNLFALVWLLARPRRSKELEILVLRHELAVLRRQA
Ga0137375_1023662843300012360Vadose Zone SoilLLWSFVYLVVRNLFALVWLLGRSRRSKELEILALRH
Ga0137375_1031950333300012360Vadose Zone SoilVVEEGWLLWSFVSLVVRNLFALVWLLGRRRHRSKELEILVLRHELAI
Ga0137375_1067272323300012360Vadose Zone SoilMYLVVRNLFALVWLLARPRRSKELEILVLRHELALLRR
Ga0137375_1103466413300012360Vadose Zone SoilLLWSFAYLVVRNLFALACLSARPRRSKELEILVLRHELAIL
Ga0137375_1136021413300012360Vadose Zone SoilLLWSLAYLVVRNLFALVCLLARPRRSRELEILVLRHELAILRRQARQK
Ga0137373_1008378143300012532Vadose Zone SoilLLWSFAYLGVRNLFALVWLLARPRRSKELEILVLRHE
Ga0137373_1080956013300012532Vadose Zone SoilLLWSFVYLVVRNLFALVWLLARPRRSKELEILVLRHELAVL
Ga0157302_1014630723300012915SoilASVIESEVQVVWSFFYLSVRNLFALVLLLGRSDRSKEVEILVLRHELLS*
Ga0134076_1048600213300012976Grasslands SoilLLWSFVYLVARNLFALVWLLARPRRSKEREILVLRHELAVLRRRTRPPL
Ga0120155_111440113300013768PermafrostLVWSFVYLATRNLFALVLLLGRPGRSKEVEILVLRHE
Ga0120173_104212613300014031PermafrostLLWSFAYLAVRNLFALVLLVGRSRRSKELEILVLRHELAVLR
Ga0134078_1060980013300014157Grasslands SoilMVEGGCLLWSLVYLVVRNLFALVWLLGRPRRSKEFEILVLRHEL
Ga0120171_102751243300014827PermafrostLFWSLVHPVVRNLFALVWLLGRPRRSKELEILVLRH
Ga0134085_1057961113300015359Grasslands SoilVQVVWSFFYLSVRNLFALVLLLGCSDRSKDVEVLVLRHEL
Ga0132257_10339379913300015373Arabidopsis RhizosphereLVRSFAYLVVRNLFALVWLLARRRRSKELELLLLRHEPAILRRQ
Ga0132257_10381029313300015373Arabidopsis RhizosphereVYVVVREGRLLWSFIYLAARNLFAFVLLFVRRRRSKELEILV
Ga0184619_1004048733300018061Groundwater SedimentVYLVVRNLFALVWLLGRPRRSKELEILILRHELAILRRQTSR
Ga0190272_1093552713300018429SoilLLWSFVYLVVRNLFALVWLLARPRRSKELEILVLRHELAILR
Ga0222622_1117118413300022756Groundwater SedimentVLWSLAYLVVRNLFALVWLLARPRRSNELEILVLRHELLMLR
Ga0208850_105041313300025457Arctic Peat SoilVLWSVAYLVVRRLFELMMLCCRSSGSKELEILVLRHELSILRR
Ga0209913_100065473300026272SoilLLWSFVYLVVRNLFALVWLLGRPRRSKELEILVLRHELAILR
Ga0209469_113416013300026307SoilVLWSFAYLVVRRLFQLIVICCRSSGSKELEILVLRHELSILR
Ga0209879_106936213300027056Groundwater SandLLWSFAYLAIRNLFALVWLLTRSGRSKELEILVLRH
Ga0209887_105695413300027561Groundwater SandLLWSFVYLMLRNLFALVWLLARPRRSKEFEILLLRHELAVLRRQ
Ga0209887_106929923300027561Groundwater SandLLWTFVYLIVRNLFALVWLLARPRRSKEFEILLLRHELAVLR
Ga0307416_10033447613300032002RhizosphereLLWSFVYLIGRNVFALIWLLARQRRSKEMELLLLRHELA

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.