Metagenome / Metatranscriptome Family F096279

Overview

Basic Information

• Family ID: F096279
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 105
• Average Sequence Length: 43 residues
• Representative Sequence: FLKSKLGDKLRLERFDGDGHALFVDDPEKFNRVLEEFLQSLPK
• Number of Associated Samples: 95
• Number of Associated Scaffolds: 105

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 99.05 %
• % of genes from short scaffolds (< 2000 bps): 86.67 %
• Associated GOLD sequencing projects: 90
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (93.333 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.333 % of family members)
• Environment Ontology (ENVO): Unclassified (22.857 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (45.714 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 30.99%
  β-sheet: 14.08%
  Coil/Unstructured: 54.93%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01541	GIY-YIG	8.57
PF09933	DUF2165	4.76
PF04773	FecR	3.81
PF08327	AHSA1	3.81
PF11645	PDDEXK_5	2.86
PF02091	tRNA-synt_2e	2.86
PF00005	ABC_tran	2.86
PF12840	HTH_20	2.86
PF02687	FtsX	1.90
PF12704	MacB_PCD	1.90

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.81
COG0752	Glycyl-tRNA synthetase, alpha subunit	Translation, ribosomal structure and biogenesis [J]	2.86
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.90
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.90
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.90
COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	Coenzyme transport and metabolism [H]	0.95
COG0686	Alanine dehydrogenase (includes sporulation protein SpoVN)	Amino acid transport and metabolism [E]	0.95
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.95
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.95
COG3276	Selenocysteine-specific translation elongation factor SelB	Translation, ribosomal structure and biogenesis [J]	0.95

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.29 %
Unclassified	root	N/A	5.71 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.29 %
Unclassified	root	N/A	5.71 %

Level 3

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.95 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.33 %
Unclassified	root	N/A	5.71 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	41.90 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.90 %
Unclassified	root	N/A	5.71 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	16.19 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.95 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.95 %
Unclassified	root	N/A	5.71 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	16.19 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.19 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	13.33 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.95 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	0.95 %
Unclassified	root	N/A	5.71 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.19 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13.33 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Natrialbales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales	0.95 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1.90 %
Unclassified	root	N/A	5.71 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.19 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	1.90 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	0.95 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.95 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1.90 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	3.81 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.95 %
Natrialbaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae	0.95 %
Unclassified	root	N/A	5.71 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.90 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.19 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.95 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.95 %
Bacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus	0.95 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.95 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1.90 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	2.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.95 %
Haloterrigena	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Haloterrigena	0.95 %
Unclassified	root	N/A	5.71 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	0.95 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	0.95 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	0.95 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.19 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.95 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.95 %
Acidobacterium sp. S8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	0.95 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.95 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1.90 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	2.86 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.95 %
Haloterrigena turkmenica	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Haloterrigena → Haloterrigena turkmenica	0.95 %
Unclassified	root	N/A	5.71 %
unclassified Bacillus (in: Bacteria)	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → unclassified Bacillus (in: Bacteria)	0.95 %

Level 11

Name	Rank	Taxonomy	Distribution
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.19 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.95 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.95 %
Acidobacterium sp. S8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	0.95 %
Bacillus sp. NSP22.2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → unclassified Bacillus (in: Bacteria) → Bacillus sp. NSP22.2	0.95 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.95 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1.90 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	2.86 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.95 %
Haloterrigena turkmenica	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Haloterrigena → Haloterrigena turkmenica	0.95 %
Unclassified	root	N/A	5.71 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001356|JGI12269J14319_10343913	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527
3300001546|JGI12659J15293_10029528	All Organisms → cellular organisms → Bacteria	1359
3300002245|JGIcombinedJ26739_100686906	All Organisms → cellular organisms → Bacteria	901
3300004080|Ga0062385_10737923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → unclassified Bacillus (in: Bacteria) → Bacillus sp. NSP22.2	638
3300004092|Ga0062389_101832095	All Organisms → cellular organisms → Bacteria	786
3300005434|Ga0070709_11252233	All Organisms → cellular organisms → Bacteria	597
3300005445|Ga0070708_100191730	All Organisms → cellular organisms → Bacteria	1912
3300005536|Ga0070697_100369780	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	1240
3300005541|Ga0070733_10056667	All Organisms → cellular organisms → Bacteria	2457
3300005557|Ga0066704_10704754	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	635

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.19%
Host-Associated	Host-Associated	3.81%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	18.10%
Plants	Host-Associated → Plants	3.81%
Terrestrial	Environmental → Terrestrial	78.10%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	16.19%
Peat	Environmental → Terrestrial → Peat	15.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.86%
Roots	Host-Associated → Plants → Roots	0.95%
Sediment	Environmental → Aquatic → Sediment	0.95%
Soil	Environmental → Terrestrial → Soil	62.86%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.95%

Type

Habitat	Taxonomy	Distribution
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.95%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.90%
Loam	Environmental → Terrestrial → Soil → Loam	15.24%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	15.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.95%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.29%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.81%

Subtype

Habitat	Taxonomy	Distribution
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.81%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.95%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.95%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.00%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	15.24%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.95%

Habitat

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.95%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.71%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.95%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	1.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.71%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.95%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.48%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.95%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.71%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.76%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.95%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.95%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.95%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.95%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.95%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.95%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.71%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.95%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_103439132	3300001356	Peatlands Soil	KLRLERFDGDGHALFVDDPEKFNHVLEEFIQSLPQ*
JGI12659J15293_100295281	3300001546	Forest Soil	KLQLERFDGDGHALFVDDPEKFNRVLEDFLQSVR*
JGIcombinedJ26739_1006869063	3300002245	Forest Soil	FLKSKLGDKLRLERFDGDGHALFVDDPQKFNHVLGEFLQSLPK*
Ga0062385_107379231	3300004080	Bog Forest Soil	QPTADYLQSKLGDKLRVERFEGDGHALFIDDPEKFNHVLEEFLRSLPK*
Ga0062389_1018320951	3300004092	Bog Forest Soil	TQQTADYLQSKLGDKLRVERFEGDGHALFVDDPEKFNHVLEEFLRSLPK*
Ga0070709_112522331	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	QPNADFLKAKLGDRVRLEWFDGDDHALFVDDVEKFNRVVADFVQSLSR*
Ga0070708_1001917304	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	DTQQSADFVKAKLGDKVRLERFDGDGHALFVDDPEKFNRVLEEFLQSLSK*
Ga0070697_1003697801	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	ADLLKSKLGEKVRLERFDGAGHALFVDDPEKFNRVLEEFLQSLPK*
Ga0070733_100566671	3300005541	Surface Soil	QASAEFLKSKLGDNVQLEKFDGDGHALFVDEPEKFNRVLEEFVRSLSK*
Ga0066704_107047542	3300005557	Soil	DKVRLERFDGDGHALFVDDPEKFNRVLEEFLQSLSK*
Ga0066654_101509092	3300005587	Soil	QQTSGSSADFLKAKLGDKVRLERFDGDGHALFVDDPEKFNKILEDYVQSLPN*
Ga0070766_109595601	3300005921	Soil	SADYLKSKLGDKVQLEKFEGDGHALFVDDPEKFNHVLEEFLKTLPK*
Ga0075028_1002473821	3300006050	Watersheds	YLKSKLADKLHLEKFEGDGHALFVDDPEKFNHVLEDFMKTLPK*
Ga0070712_1013686672	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	TQQTADLLKSRLGDKVRLARFDGDGHALFVDDPEKFNRVLEEFVRSLPQ*
Ga0097621_1017167091	3300006237	Miscanthus Rhizosphere	ADFLKAKLGEKVRLERFDGAGHALFVDEPEKFNRVLEDFLQSLPQ*
Ga0066709_1006429714	3300009137	Grasslands Soil	RVRLERFDGDGHALFVDDPEKFNRVLEEFLQSLSK*
Ga0105248_112577161	3300009177	Switchgrass Rhizosphere	MQATAELLKTKFGDRVRLEKFDGDGHALFVEDPEKFNRVLEEFVQSLPK*
Ga0116108_11173351	3300009519	Peatland	SKLGDKLRLEKFDGDGHALFVDDPEKFNRVLDEFIKSLPK*
Ga0116110_11105321	3300009643	Peatland	PSADFLQSKLGDKLRLERFDGDGHALFIDDPEKFNHVLEGFLQTLPK*
Ga0116121_10531893	3300009644	Peatland	QPESQPTADFLKTKLGDKLRLERFDGDGHALFVDDPDKFNHVLEEFVQSLPK*
Ga0116106_12764541	3300009645	Peatland	KLGDKLRLELFGGDGHALFVDEPEKFNRVVEDFIQSLPK*
Ga0116216_104799201	3300009698	Peatlands Soil	TQQTADFLKLKLGDKLRLERFDGDGHALFADDPERFNRVLEEFLKSLPK*
Ga0126380_116281461	3300010043	Tropical Forest Soil	NKVRLERFGEDGHALFVDDPVKFNRMVDEFVQSLPNQ*
Ga0134125_110430803	3300010371	Terrestrial Soil	GDKVRLEKFEDAGHALFVDDAERFNRVLDEFAQSVGK*
Ga0136449_1007275071	3300010379	Peatlands Soil	PSADFLKSKLGERLRLERFDGDGHALFVDEPEKFNRVLEEFVRGLPK*
Ga0136449_1010645501	3300010379	Peatlands Soil	YLKSKLGDKVQLERFDGDGHALFVDDPEKFNHVLEDFLQTAWSSH*
Ga0136449_1012162753	3300010379	Peatlands Soil	QASADFLKSKLGDRLRQERFDGDGHALFVDEPEKFNRVLEEFVKGLPK*
Ga0137389_116670151	3300012096	Vadose Zone Soil	KVRLERFDGDGHALFVDDPEKFNRVLEEFLQRLPK*
Ga0137387_109963791	3300012349	Vadose Zone Soil	KSKLGDKVQLERFDGDGHALFVDDPEKFNHVLEAFIQGLPK*
Ga0137366_104034881	3300012354	Vadose Zone Soil	SKLGDRLKIERFEGDGHALFVDDPEKFNRVLDEFVQGLPK*
Ga0137361_106442932	3300012362	Vadose Zone Soil	TQQSADFVKAKFGDKVRLERFDGDGHALFVDDPDKFNRVLEEFLQNLPK*
Ga0137404_107497731	3300012929	Vadose Zone Soil	KVRLERFDGDGHALFVDDPEKFNRVLEEFLESLPK*
Ga0137404_118575221	3300012929	Vadose Zone Soil	FVKAKLGDKVRLQRFDGDGHALFVDDPQKFNRVLEEFLQSLSK*
Ga0181532_101242542	3300014164	Bog	PTADFLKSKLGDKLRLEKFDGDGHALFVDDAEKFNRVLDEFIKSLPK*
Ga0187802_100986373	3300017822	Freshwater Sediment	GANLRLELFEGDGHALFVDDPEKFNHVLEDFLKTSWSSH
Ga0187854_104901442	3300017938	Peatland	QQSADYLKLKLGDKLRLELFGGDGHALFVDEPEKFNRVVEDFIQSLPK
Ga0187783_109521421	3300017970	Tropical Peatland	SKLADGVRLERFDGDGHALFVDDPEKFNRVVEEFVGSLPK
Ga0187880_10341401	3300018016	Peatland	ADFLQLKLGDKLRLERFDGDGHALFIDDPEKFNHVLEGFLQTLPK
Ga0187857_100422143	3300018026	Peatland	DFLQLKLGDKLRLERFDGDGHALFIDDPEKFNHVLEGFLQTLPK
Ga0187857_101516602	3300018026	Peatland	SQPTADFLKSKLGDKLRLEKFDGDGHALFVDDPEKFNRVLDEFIKSLPK
Ga0187869_100537771	3300018030	Peatland	SADFLQLKLGDKLRLERFDGDGHALFIDDPEKFNHVLEGFLQTLPK
Ga0187875_107654872	3300018035	Peatland	PESQQSADYLKLKLGDRLRLELFDGDGHALFVDDPEKFNHILGDFIRSLPQ
Ga0193751_10239093	3300019888	Soil	SVFLKSKLGDKLRLERFEGDGHALFVDEPEKFNCVLEEFVRSLPQ
Ga0193716_12517532	3300020061	Soil	FLKSKLGEKVRLESFEGAGHALFVDDAEKFNRVLAEFMQGLPK
Ga0210407_104309232	3300020579	Soil	PESEPSADYLKSKLGDKLRLERFEGDGHALFVDEPEKFNHVLEDFLQSLPK
Ga0210399_115160952	3300020581	Soil	PESQQSADYLKSKLGDKLRLERFDGDGHALFVDDPEKFNHVLEDFMKTAAH
Ga0210405_105459132	3300021171	Soil	MKNSILKAKLGDKVRLERFDEDGHALFVDDPVKFNRMVEEFVQSLPKQ
Ga0210388_113454932	3300021181	Soil	LKLKLGDKLRLEIFDGDGHALFVDDPVKFNHVVEDFIQSLPR
Ga0210385_105110521	3300021402	Soil	LKTNLGDKIGLDRFDGDGHALFVDDPDKFNRVLEEFVKGLPK
Ga0210383_114665242	3300021407	Soil	ADFLKSKLGEKLRLEKFDGDGHALFVDDPDKFNRLLDEFLKSAPQP
Ga0210383_117356132	3300021407	Soil	RVQLERFDGDGHAVFVDDPEKFNHVLEDFVHGLPK
Ga0210394_117271851	3300021420	Soil	TADFLKSKLGDKLRLERFDGDGHALFVDDPEKFNGVVEEFIHNLPK
Ga0210391_111184981	3300021433	Soil	LGDDVRIERFDGDGHALFVDDPEKFNRVLEEFVHDLPK
Ga0210390_116559701	3300021474	Soil	GDKLRLEKFDGDGHALFVDDPEKFNRVLEGFMQGLPK
Ga0210402_115322782	3300021478	Soil	ESQPSADYLKSKLGDKLRVERFEGDGHALFVDEPEKFNRVLEDFLQSLPK
Ga0210410_100613431	3300021479	Soil	DKVRLERFDGDGHALFVDDPEKFNRVVEEFVQSISK
Ga0210410_107007372	3300021479	Soil	LKSKLGDKLRLERFDGDGHALFVDEPEKFNRVLEEFVKSLPK
Ga0212123_105399832	3300022557	Iron-Sulfur Acid Spring	QPSADYIKSKLGDKVRLERFDGDGLALFADEPEKFNRVLEEFVQSVAK
Ga0224532_10180051	3300022863	Soil	LGDKVRLERFDGDGHALFVDDPEKFNRVLGEFLQSLPR
Ga0208190_10804092	3300025473	Peatland	ADFLKTKLGDKLRLERFDGDGHALFVDDPDKFNHVLEEFVQSLPK
Ga0207685_106203791	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	KVRLERFDGDGHALFVDDPEKFNRVLEEFLQSLSK
Ga0207699_110296272	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	KLGDRVRLEWFDGDDHALFVDDVEKFNRVVADFVQSLSR
Ga0207690_117107882	3300025932	Corn Rhizosphere	TAELLKTKFGDRVRLEKFDGDGHALFVEDPEKFNRVLEEFVQSLPK
Ga0207708_120228362	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	TLGDKARLEKFEDAGHALFVDDAERFNRVVDEFAQSVGN
Ga0209161_100525321	3300026548	Soil	QSADFVKAKLGDRVRLERFDGDGHALFVDDPEKFNRVLEEFLQSLSK
Ga0209219_11378971	3300027565	Forest Soil	LKSKLGDKVRFEKFEGDGHALFVDDPEKFNRVLEEFLQGLPK
Ga0209908_101042052	3300027745	Thawing Permafrost	KLRLERFDGDGHALFVDDPEKFNRVLEEFLQSLPK
Ga0209380_100699971	3300027889	Soil	GDKIRLERFDGDGHALFVDDAEKFNRLLEEFIHNIPKLFTPK
Ga0209624_102254951	3300027895	Forest Soil	QSGSQQSADFVKSKLGDKVRLERFDGDGHALFVDDPEKFNRVVEEFVQSISK
Ga0209624_105601351	3300027895	Forest Soil	ADFLKSKLGEKVRLERFDGDGHALFVDDPEKFNRVLAEFVQGLPK
Ga0265351_10023143	3300028020	Soil	SQATAVFLKSKLGDKLRLERFDGDGHALFVDDPEKFNGVVEEFIHNLPK
Ga0209526_109588081	3300028047	Forest Soil	FLKLKLGDKLRLERFDGDGHALFLDDPEKFNHVLEEFLKTLPK
Ga0302147_102065902	3300028566	Bog	KMKLGDKLRLEIFEGDGHALFVDDPEKFNHVLESFLQTAWSSH
Ga0302225_103319822	3300028780	Palsa	DYLKLKLGDSVRLERFDGDGHALFVDDPEKFNHVLAEFVHSLPK
Ga0308309_100949662	3300028906	Soil	SADFVKSKLGDKVRLERFDGDGHALFVDDPEKFNRVVEEFVQSISK
Ga0311369_113722361	3300029910	Palsa	KLGDNLRLERFDGDGHALFVDDPEKFNHVLEDFLRTAWSSH
Ga0311358_107101391	3300029915	Bog	PTADFLKSKLGDKVRLERFDGDGHALFVDDPEKFNRVLGEFLQSLPR
Ga0302148_12340342	3300029916	Bog	KLGDKLRLEIFEGDGHALFVDDPEKFNHVLESFLQTAWSSH
Ga0311352_104233021	3300029944	Palsa	LKLKLGDSVRLERFDGDGHALFVDDPEKFNHVLAEFVHSLPK
Ga0302300_10688361	3300030042	Palsa	KLRLEIFEGDGHALFVDDPEKFNHVLESFLQTAWSSH
Ga0302177_100046951	3300030053	Palsa	GSQGTADFLKSKLGDKLRLEKFEGDGHALFVDDPEKFNRLLEDFVKGLPSE
Ga0302179_101719142	3300030058	Palsa	FLKSKLGDKLRLEKFEGDGHALFVDDPEKFNRLLEDFVKGLPSE
Ga0311372_116069851	3300030520	Palsa	LKLGDSVRLERFDGDGHALFVDDPEKFNHVLAEFVHSLPK
Ga0311354_108525232	3300030618	Palsa	QPSADYLKLKLGDSVRLERFDGDGHALFVDDPEKFNHVLAEFVHSLPK
Ga0302310_101085381	3300030737	Palsa	ETQQTADYLKMKLGDKLRLEIFEGDGHALFVDDPEKFNHVLESFLQTAWSSH
Ga0265741_1057612	3300030814	Soil	LGDKIRLERFDGDGHALFVDDPEKFNRVLEEFIHNLPK
Ga0170834_1000335052	3300031057	Forest Soil	ADYLKLKLADKIRLERFDGDGHALFVDDPEKFNKLLEEFIKGLGK
Ga0265760_102224071	3300031090	Soil	ADFVKSKLGDKVRLERFDGDGHALFVDDPEKFNRVVEEFVQSISQ
Ga0302307_100227631	3300031233	Palsa	TADFLKSKLGDKLRLEKFEGDGHALFVDDPEKFNRLLEDFVKGLPSE
Ga0302325_103777405	3300031234	Palsa	FLKSKLGDKLRLERFDGDGHALFVDDPEKFNRVLEEFLQSLPK
Ga0265316_100651801	3300031344	Rhizosphere	YQPESQATADFLKSKLGDKLRLERFDGDGHALFVDEPEKFNHVLEEFIKGLPK
Ga0307474_101242032	3300031718	Hardwood Forest Soil	FLKSKLGDKVRFEKFEGDGHALFVDDPEKFNRMLEEFLQGLPK
Ga0307477_110382411	3300031753	Hardwood Forest Soil	KSKLGDKLRLERFDGDGHALFIDDPQKFNRAVEGFVQSLAK
Ga0307475_102965583	3300031754	Hardwood Forest Soil	LLKSKLGDKVRLERFDGDGHALFVDDPEKFDRLLEEFLQSLPK
Ga0307475_109188861	3300031754	Hardwood Forest Soil	GDKVRLERFDGDGHALFVDDPEKFDRLLEEFLQSLPK
Ga0307475_113104432	3300031754	Hardwood Forest Soil	ADYIKSKLGDKLRLELFEGDGHALFVDDPQKFNHVLEEFLQGLPK
Ga0316219_13246522	3300031759	Freshwater	KLGDRLRLERFDGDGHALFVDDPEKFNRVLEGFIQSLPR
Ga0307478_102140902	3300031823	Hardwood Forest Soil	KLGDKLRLERFDGDGHALFVDDPEKFNNVLEQFIQGLPK
Ga0310917_110388212	3300031833	Soil	PTMQQSADFVKSKLGDKVRIKRFDGDGHALFVDDPENFNRVLREFLKELPK
Ga0311301_103379331	3300032160	Peatlands Soil	PSADFLKSKLGERLRLERFDGDGHALFVDEPEKFNRVLEEFVRGLPK
Ga0311301_109354431	3300032160	Peatlands Soil	RLRQERFDGDGHALFVDEPEKFNRVLEEFVKGLPK
Ga0316230_11012342	3300032668	Freshwater	PEMQPTADFLKSKLGDKLRLERFDADGHALFVDDPEKFNRVLEEFIQSLPK
Ga0335085_103176982	3300032770	Soil	LRLERFEGDGHALFVDDPDKFNRVLDEFVKGLPQL
Ga0326726_121678811	3300033433	Peat Soil	FLKSKLGDKVRLERFDGDGHALFVDDPEKFNRVLEEFLQSLPR
Ga0370515_0161011_3_128	3300034163	Untreated Peat Soil	KSKLGDRVRLERFEGDGHALFVDDPEKFDRVLEEFVQSLHK