NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F096271

Metagenome / Metatranscriptome Family F096271

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096271
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 43 residues
Representative Sequence MERFIAGLVKDFESGKVDRREFCKTVALAATVYAAGDAAQAQ
Number of Associated Samples 90
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 81.82 %
% of genes near scaffold ends (potentially truncated) 10.48 %
% of genes from short scaffolds (< 2000 bps) 8.57 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (90.476 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil
(14.286 % of family members)
Environment Ontology (ENVO) Unclassified
(25.714 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(57.143 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 51.43%    β-sheet: 0.00%    Coil/Unstructured: 48.57%
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510152025303540MERFIAGLVKDFESGKVDRREFCKTVALAATVYAAGDAAQAQSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
9.5%90.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Watersheds
Peatland
Bog Forest Soil
Freshwater Sediment
Marine
Marine Estuarine
Groundwater Sediment
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Peatlands Soil
Agricultural Soil
Sugarcane Root And Bulk Soil
Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Tropical Peatland
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Termite Gut
Avena Fatua Rhizosphere
Tabebuia Heterophylla Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
2.9%2.9%13.3%14.3%5.7%2.9%9.5%6.7%3.8%3.8%3.8%2.9%4.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J12803_10021741313300000955SoilMERFIADLVKDFEGGKIDRRQFCETVALAATVYAAGSAAQAAPAQGLKM
YBBDRAFT_106155723300001372Marine EstuarineMERFIADLVKDFESGKINRRQFCETVALATTVFAA
JGI12053J15887_1029279213300001661Forest SoilMERFIADLVKQFEGGTVDRREFCQTVALAAAVYAAGDTANAQTGTGFKV
JGI12053J15887_1041707213300001661Forest SoilMERFIANLVKDFESGKLDRRQFCETVALAATVYAAGEGAANAAP
JGIcombinedJ26739_10131899723300002245Forest SoilMERFIAGLVKDFESGKVDRREFCQTVALAAVVYGTGEAANAQ
soilH1_1038036313300003321Sugarcane Root And Bulk SoilMERFIADLVKRFEDGKITRRQFCETVAVAATVYAAGESAANAAPTQGFK
Ga0062389_10455959413300004092Bog Forest SoilMERFIAGLVTDFESGKVDRREFCQTVALAAVVYAAGDAAN
Ga0066676_1016864133300005186SoilMERFIADLVKNFESGKINRRQFCETVALAATVYAAGEEAANAAPSQGFK
Ga0066388_10144567723300005332Tropical Forest SoilMERFIADLVQGLDSGRIDRREFCKSVALAAAVYGAGDAAQAQVQRGFKI
Ga0066388_10704583813300005332Tropical Forest SoilMERFIAGLVQGLDSGKIDRREFCKSVALAAAVYGAGDAAQAQVQRGFK
Ga0070703_1027648913300005406Corn, Switchgrass And Miscanthus RhizosphereMERFIADLVKDFESGKVSRRQFCETVALAATVYAAGDAAQAAPAQG
Ga0066661_1050636313300005554SoilMERFIAGLVQGLDSGKIDRREFCQSVALAAAVYGAGDAAQAQVQRGFKII
Ga0070762_1014468113300005602SoilMEGFVADLVKSFESGKIDSREFCQTIALAATVYAAGDAAHAQTSTG
Ga0081540_117051923300005983Tabebuia Heterophylla RhizosphereMERFIADLVRNFESGRINRRQFCEAVTLAASVYAMGDAAKAQPARGLK
Ga0075021_1045553823300006354WatershedsMERFIADLVRSFESGKIDRRQFCEAVALATTVFAAGSAAEAAPARGLK
Ga0075021_1108571333300006354WatershedsMERFIADLVQGLDSGQIDRREFCKTVALAAAVYGAGDAAQ
Ga0066658_1049560513300006794SoilMERFIADLVKRFEGGKIDRREFCQTVALAATVCAAG
Ga0075431_10092618323300006847Populus RhizosphereMERFIADLVKQFEGGAIDRREFCQTVALAAAVYAAGDAANAQTGTGFKV
Ga0075425_10095205323300006854Populus RhizosphereMERFIADLVKQFEGGAIDRREFCQTVALAAAVYAAG
Ga0066710_10417660013300009012Grasslands SoilMERFIADLVQDFESGKINRRQFCETVALAATVYAAGEEAANAAPSQGFK
Ga0111539_1148336313300009094Populus RhizosphereMERFIADLVKDFESGKVSRRQFCETVALAATVYAAGDAAQAAPAQ
Ga0099792_1000182573300009143Vadose Zone SoilMERFIADLVKQFEGGTVDRREFCQTVALAAAVYAAGDTA
Ga0099792_1053527813300009143Vadose Zone SoilMERFIADLVKDYESGKVDRREFCKTVALAATVYAAGDAAMAQ
Ga0116216_1052923613300009698Peatlands SoilMERFIADLVQGLDAGRLDRREFCQAVALAAAVYGAGDAAQAQAK
Ga0126384_1033377313300010046Tropical Forest SoilMERFIADLVQDFESGKINRRQFCETVALAATVYAAG
Ga0126384_1155045823300010046Tropical Forest SoilMERFIADLVQGLDSGRIDRREFCKSVALAAVVYSAGDAAQAQVPRGF
Ga0126382_1146407923300010047Tropical Forest SoilMGAPIREDYGMERFIADLVSSFESGKIDRRQFCETVALAATVYAAGTAATEAAPARGL
Ga0123356_1104643513300010049Termite GutMERFIAGLVQDLDSGNIDRREFCKSVALAAAVYGAGDAA
Ga0126370_1026391113300010358Tropical Forest SoilMERFIANLAEGLDTGAIDRREFCKAAALAAAVYGAGEA
Ga0126376_1147722613300010359Tropical Forest SoilMERFIADLVQGLDSGKIDRREFCQAVALAAAVYGAGDAAQ
Ga0126372_1042211233300010360Tropical Forest SoilMERFIANLVEGLDTGAIDRREFCKAVALAAAVYGAGDAAR
Ga0126372_1297768233300010360Tropical Forest SoilMERFIANLVKQYESGAVDRREFCKTLALAATVYAAGDTAKA
Ga0126378_1052263613300010361Tropical Forest SoilMERFIAGLVKDFERGKLDRREFCQTVALAAVVYGAGEAANAQV
Ga0126378_1254224513300010361Tropical Forest SoilMERFIADLVQGLDNGRIDRREFCQAVALAAAVYGAGDAAQAQAPR
Ga0126377_1014116713300010362Tropical Forest SoilMGAPIREDYGMERFIADLVSSFESGKIDRRQFCETVALAATVYAAGTAATEAAPARG
Ga0134124_1090382513300010397Terrestrial SoilMERFIADLVKRFEDGKITRRQFCETVAVAATVYAAGESAANAAPTQGFKMIA
Ga0126383_1009616943300010398Tropical Forest SoilMERFIADLVKQFEGGAIDRREFCQTVALAAAVYATGDAANAQTGTGFK
Ga0134123_1323485023300010403Terrestrial SoilMERFIADLVKKYESGAINRREFCQTVTLAATVYAAGDAAHAQAP
Ga0137388_1097050723300012189Vadose Zone SoilMERCIADLVQGLDGGKIDRREFCQAVALAAAVYGAGDAAQAQAQRGFKIIG
Ga0137364_1060819613300012198Vadose Zone SoilMERFIADLVQDFESGKINRRQFCETVALAATVYAAGEEAANA
Ga0137382_1107482713300012200Vadose Zone SoilMERFIADLVKDFDSGKVDRREFCQTVALAAMVYAA
Ga0137399_1145964113300012203Vadose Zone SoilMERFIANLVKDFEAGKITRRQVCEGVAIAATVYGAGGAAK
Ga0137381_1008454513300012207Vadose Zone SoilMERFIADLVQDFESGKINRRQFCETVALAATVYAA
Ga0150985_11986810133300012212Avena Fatua RhizosphereMERFIADLVKKFETGAVDRREFCQTVSLAAAVYAAGDAAQAQTGT
Ga0137368_1013660713300012358Vadose Zone SoilMERFIADLVKNYESGAIDRREFCKTVALAATVYAAGDAAKA
Ga0137385_1111557013300012359Vadose Zone SoilMERFIAGLVKDFETGKMTRRQFGEAVAIAAIVYGYGTDAK
Ga0137360_1118753713300012361Vadose Zone SoilMERFIADLVKDYESGKIDRREFCKTVALAATVYAAGDTAMAQAPRG
Ga0137416_1101246713300012927Vadose Zone SoilMERFIADLVKDYESGKVDRREFCKTVALAATVYAA
Ga0137404_1062466713300012929Vadose Zone SoilMERLIADLVKKFESGAVSRREFCETVALAATVYAAGDA
Ga0126375_1070258323300012948Tropical Forest SoilMERFIADLVRNFESGRIKRRQFCEAVTLAATVYAAGDAAKAQPARGL
Ga0126369_1009084643300012971Tropical Forest SoilMERFIADLVQGLDSGKIDRREFCKSVALAAAVYGAGDAARAQVQRGFK
Ga0126369_1010778243300012971Tropical Forest SoilMERFIANLVEGLDTGAIDRREFCKAVALAAAVYGAG
Ga0157380_1108882023300014326Switchgrass RhizosphereMERFIADLFKDFESGKVSRRQFCETVALAATVYAAGDA
Ga0137412_1132162413300015242Vadose Zone SoilMERFVAGLVDDLESGKMDRRQFCQTMALAATVYAAGETAANAAASQ
Ga0182041_1052135113300016294SoilMERFIAGLVKDYQTGRIDRREFCQTVALAAAVYGAGSAANAQNTGKGFK
Ga0181505_1082740723300016750PeatlandMERFIADLVEDLDKGQIDRREFCQAVALAAAVYGAGEAAQAQEA
Ga0134083_1034511413300017659Grasslands SoilMERFIADMVQDFESGKINRRQFCETVALAATVYAAGEEAAN
Ga0187808_1024203313300017942Freshwater SedimentMERFIADLVQGLDSGKIDRREFCKSVALAAAVYGA
Ga0187782_1134703523300017975Tropical PeatlandMERFIADLVKAFEAGKLSRREFCQTVALAASVYAA
Ga0187823_1004386033300017993Freshwater SedimentMERFIADLVKRFESGKMDRREFCQTVALAATVFAAGDAAHAQ
Ga0187787_1018242423300018029Tropical PeatlandMERFIADLVKQFEGGAIDRREFCQTVALAAAVYAAGDAA
Ga0184620_1007900523300018051Groundwater SedimentMERFIADLVKQFEGGAIDRREFCQTVTLAAAVYAASDGLST
Ga0187765_1094865223300018060Tropical PeatlandMERFIDNLVQGLDRGAIDRREFCQAMALAAAVYGVGEAAQAQASR
Ga0187772_1106667223300018085Tropical PeatlandMERFIADLVRAFEAGKLSRREFCQTVALAATVYAAGDTADAQ
Ga0066662_1137988623300018468Grasslands SoilMERFIADLVKQFEGGAIDRREFCQTVALAAAAYAAGD
Ga0066669_1055521423300018482Grasslands SoilMEKFIANLVKNFESGQIDRREFCQTVALAATVYAAGDAANA
Ga0210403_1139763613300020580SoilMERFIADLVKSFESGKVDRREFCKTVALAATVYAAADAAQ
Ga0210401_1110382513300020583SoilMEQFFADLVKDFENGRINRRQFCETVALAATVYAA
Ga0210394_1006912843300021420SoilMERFVADLVKSFESGKIDRREFCQTIALAATVYAAGDAAHA
Ga0210394_1071533623300021420SoilMERFIADLVKDFDSGKVDRREFCQTVALAAVVYASGEAANA
Ga0126371_1347740513300021560Tropical Forest SoilMERFIADLVQGLDRGRIDRREFCQAVALAAAVYSAGD
Ga0213853_1078146423300021861WatershedsMERFIADLVKGFESGKLSRREFCETVALAATVYAAGDAANAQPARGFKL
Ga0207663_1069553823300025916Corn, Switchgrass And Miscanthus RhizosphereMERFIAGLVKDFEAGKLSRREFCEAVALAAVVYGAGDAAKA
Ga0207700_1166211823300025928Corn, Switchgrass And Miscanthus RhizosphereMERFIADLVKSFESGKLDRREFCKTVALAATVYAAGDAAQAQAP
Ga0207664_1168012013300025929Agricultural SoilMERFIAGLVKDFEAGKLSRREFCEAVALAAVVYGAGDAAKAA
Ga0209375_129838923300026329SoilMERFIADLVKNFESGKINRRQFCETVALAATVYAAGEEAANA
Ga0257172_100018173300026482SoilMERFIAGLVKDFERGKLDRREFCQTVALAAAVYGAGDA
Ga0209056_1008059413300026538SoilMERFIADLVQDFESGKINRRQFCETVALAATVYAAGEEAANAAPSQGFKM
Ga0208042_112702123300027568Peatlands SoilMERFIAGLVNDFERGTVDRREFCQTVALAAVVYGAG
Ga0209073_1022822623300027765Agricultural SoilMEKFISGLVKDFEAGKITRRDFCEAVALAAIVYGAGDAANAATAKGFKM
Ga0209465_1023032313300027874Tropical Forest SoilMECFIADLVQGLDSGRIDRREFCQAVALAAAVYGAGDA
Ga0209465_1051677023300027874Tropical Forest SoilMERFIAGLVKDFESGKLDRREFCQTVALAAVVYGAGEAANAQVARGFK
Ga0209068_1082160423300027894WatershedsMERFISNLVQGLDSGEIDRREFCKAVVLAAAVYGAGD
Ga0209624_1040256213300027895Forest SoilMERFIADLVGDYERGKVDRSEFCKTVALAATVYAAGDTARAQAPRGLK
Ga0209488_1028367213300027903Vadose Zone SoilMERFIAGLVKDFESGKMDRREFCQTVALAAAVYGAGDAANAQATRGFK
Ga0207428_1039245613300027907Populus RhizosphereMERFIADLVKDFESGKVSRRQFCETVALAATVYAAGDAAQAAPA
Ga0207428_1095062223300027907Populus RhizosphereMERFIADLVKQFEGGAIDRREFCQTVALAAAVYAAGDAANAQTG
Ga0307287_1011630613300028796SoilMERFIADLVKQFEGGAIDRREFCQTVVLAAAVYAAGDAANAQ
Ga0310686_10075900323300031708SoilMERFIADLVKGFESGKLSRREFCETVALAATVYAAGDAANAQPA
Ga0310686_11789474223300031708SoilMERFIADLVKNFESGKLSRREFCETVALAATVYAAGDAANA
Ga0307476_1080813113300031715Hardwood Forest SoilMERFIAGLVKDFEAGKITRRQFCEAVALAAAVYGFGDAAKAAPARG
Ga0307469_1047784913300031720Hardwood Forest SoilMERFIADLVRNFESGRINRRQFCESVALAASVYAMGDAANAQTS
Ga0318521_1026272713300031770SoilMERFIAGLVKDFESGKVDRREFCKTVALAATVYAAGDAAQAQPTRGFKV
Ga0310122_1038967823300031800MarineVEQFIADLVKEYECGKIDRRRFCETVGIAAVVYAAGEGAANAA
Ga0310124_1018279623300031804MarineVEQFIADLVKEYECGKIDRRRFCETVGIAAVVYAAGEGAANAT
Ga0306925_1223043223300031890SoilMERFIADLVKNYESGKVNRREFCQTVALAATVYAAGDAAKAQAPRGLK
Ga0318536_1006072313300031893SoilMERFIAGLVRDFESGKVDRREFCKTIALAATVYAAGDAAEAQPARGFKV
Ga0306923_1092509723300031910SoilMERFIADLVQGLDNGRIDRREFCQAVALAAAVYGAG
Ga0318505_1020572913300032060SoilMERFIAGLVKDFESGKVDRREFCKTVALAATVYAAD
Ga0318553_1025638133300032068SoilMERFIAGLVKDFESGKVDRREFCKTVALAATVYAAGDAAQAQ
Ga0306920_10155350313300032261SoilMERFIADLVKSFESGKMDRREFCQTVALAATVYAAGDAANAQAPSGMK
Ga0306920_10226015613300032261SoilMERFIADLVQGLDSGKIDRREFCKAVALAAAVYGAGDAAQAQAQRGF
Ga0306920_10324307023300032261SoilMERFIAGLVKDFEAGKITRRQFGEGVAIAATVYGFGDAAKAAPAKGMK
Ga0306920_10396825723300032261SoilMERFIADLVRDYESGKVDRREFCKTVALAATVYAAGDAATAQA
Ga0310914_1094859813300033289SoilMERFIAGLVKDFESGKVGRREFCQTVALAAVVYGAGE


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