Basic Information | |
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Family ID | F096271 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 105 |
Average Sequence Length | 43 residues |
Representative Sequence | MERFIAGLVKDFESGKVDRREFCKTVALAATVYAAGDAAQAQ |
Number of Associated Samples | 90 |
Number of Associated Scaffolds | 105 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 81.82 % |
% of genes near scaffold ends (potentially truncated) | 10.48 % |
% of genes from short scaffolds (< 2000 bps) | 8.57 % |
Associated GOLD sequencing projects | 87 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.67 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (90.476 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (14.286 % of family members) |
Environment Ontology (ENVO) | Unclassified (25.714 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (57.143 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.43% β-sheet: 0.00% Coil/Unstructured: 48.57% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.67 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Watersheds Peatland Bog Forest Soil Freshwater Sediment Marine Marine Estuarine Groundwater Sediment Watersheds Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Peatlands Soil Agricultural Soil Sugarcane Root And Bulk Soil Soil Grasslands Soil Soil Soil Hardwood Forest Soil Tropical Peatland Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Termite Gut Avena Fatua Rhizosphere Tabebuia Heterophylla Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI1027J12803_1002174131 | 3300000955 | Soil | MERFIADLVKDFEGGKIDRRQFCETVALAATVYAAGSAAQAAPAQGLKM |
YBBDRAFT_10615572 | 3300001372 | Marine Estuarine | MERFIADLVKDFESGKINRRQFCETVALATTVFAA |
JGI12053J15887_102927921 | 3300001661 | Forest Soil | MERFIADLVKQFEGGTVDRREFCQTVALAAAVYAAGDTANAQTGTGFKV |
JGI12053J15887_104170721 | 3300001661 | Forest Soil | MERFIANLVKDFESGKLDRRQFCETVALAATVYAAGEGAANAAP |
JGIcombinedJ26739_1013189972 | 3300002245 | Forest Soil | MERFIAGLVKDFESGKVDRREFCQTVALAAVVYGTGEAANAQ |
soilH1_103803631 | 3300003321 | Sugarcane Root And Bulk Soil | MERFIADLVKRFEDGKITRRQFCETVAVAATVYAAGESAANAAPTQGFK |
Ga0062389_1045595941 | 3300004092 | Bog Forest Soil | MERFIAGLVTDFESGKVDRREFCQTVALAAVVYAAGDAAN |
Ga0066676_101686413 | 3300005186 | Soil | MERFIADLVKNFESGKINRRQFCETVALAATVYAAGEEAANAAPSQGFK |
Ga0066388_1014456772 | 3300005332 | Tropical Forest Soil | MERFIADLVQGLDSGRIDRREFCKSVALAAAVYGAGDAAQAQVQRGFKI |
Ga0066388_1070458381 | 3300005332 | Tropical Forest Soil | MERFIAGLVQGLDSGKIDRREFCKSVALAAAVYGAGDAAQAQVQRGFK |
Ga0070703_102764891 | 3300005406 | Corn, Switchgrass And Miscanthus Rhizosphere | MERFIADLVKDFESGKVSRRQFCETVALAATVYAAGDAAQAAPAQG |
Ga0066661_105063631 | 3300005554 | Soil | MERFIAGLVQGLDSGKIDRREFCQSVALAAAVYGAGDAAQAQVQRGFKII |
Ga0070762_101446811 | 3300005602 | Soil | MEGFVADLVKSFESGKIDSREFCQTIALAATVYAAGDAAHAQTSTG |
Ga0081540_11705192 | 3300005983 | Tabebuia Heterophylla Rhizosphere | MERFIADLVRNFESGRINRRQFCEAVTLAASVYAMGDAAKAQPARGLK |
Ga0075021_104555382 | 3300006354 | Watersheds | MERFIADLVRSFESGKIDRRQFCEAVALATTVFAAGSAAEAAPARGLK |
Ga0075021_110857133 | 3300006354 | Watersheds | MERFIADLVQGLDSGQIDRREFCKTVALAAAVYGAGDAAQ |
Ga0066658_104956051 | 3300006794 | Soil | MERFIADLVKRFEGGKIDRREFCQTVALAATVCAAG |
Ga0075431_1009261832 | 3300006847 | Populus Rhizosphere | MERFIADLVKQFEGGAIDRREFCQTVALAAAVYAAGDAANAQTGTGFKV |
Ga0075425_1009520532 | 3300006854 | Populus Rhizosphere | MERFIADLVKQFEGGAIDRREFCQTVALAAAVYAAG |
Ga0066710_1041766001 | 3300009012 | Grasslands Soil | MERFIADLVQDFESGKINRRQFCETVALAATVYAAGEEAANAAPSQGFK |
Ga0111539_114833631 | 3300009094 | Populus Rhizosphere | MERFIADLVKDFESGKVSRRQFCETVALAATVYAAGDAAQAAPAQ |
Ga0099792_100018257 | 3300009143 | Vadose Zone Soil | MERFIADLVKQFEGGTVDRREFCQTVALAAAVYAAGDTA |
Ga0099792_105352781 | 3300009143 | Vadose Zone Soil | MERFIADLVKDYESGKVDRREFCKTVALAATVYAAGDAAMAQ |
Ga0116216_105292361 | 3300009698 | Peatlands Soil | MERFIADLVQGLDAGRLDRREFCQAVALAAAVYGAGDAAQAQAK |
Ga0126384_103337731 | 3300010046 | Tropical Forest Soil | MERFIADLVQDFESGKINRRQFCETVALAATVYAAG |
Ga0126384_115504582 | 3300010046 | Tropical Forest Soil | MERFIADLVQGLDSGRIDRREFCKSVALAAVVYSAGDAAQAQVPRGF |
Ga0126382_114640792 | 3300010047 | Tropical Forest Soil | MGAPIREDYGMERFIADLVSSFESGKIDRRQFCETVALAATVYAAGTAATEAAPARGL |
Ga0123356_110464351 | 3300010049 | Termite Gut | MERFIAGLVQDLDSGNIDRREFCKSVALAAAVYGAGDAA |
Ga0126370_102639111 | 3300010358 | Tropical Forest Soil | MERFIANLAEGLDTGAIDRREFCKAAALAAAVYGAGEA |
Ga0126376_114772261 | 3300010359 | Tropical Forest Soil | MERFIADLVQGLDSGKIDRREFCQAVALAAAVYGAGDAAQ |
Ga0126372_104221123 | 3300010360 | Tropical Forest Soil | MERFIANLVEGLDTGAIDRREFCKAVALAAAVYGAGDAAR |
Ga0126372_129776823 | 3300010360 | Tropical Forest Soil | MERFIANLVKQYESGAVDRREFCKTLALAATVYAAGDTAKA |
Ga0126378_105226361 | 3300010361 | Tropical Forest Soil | MERFIAGLVKDFERGKLDRREFCQTVALAAVVYGAGEAANAQV |
Ga0126378_125422451 | 3300010361 | Tropical Forest Soil | MERFIADLVQGLDNGRIDRREFCQAVALAAAVYGAGDAAQAQAPR |
Ga0126377_101411671 | 3300010362 | Tropical Forest Soil | MGAPIREDYGMERFIADLVSSFESGKIDRRQFCETVALAATVYAAGTAATEAAPARG |
Ga0134124_109038251 | 3300010397 | Terrestrial Soil | MERFIADLVKRFEDGKITRRQFCETVAVAATVYAAGESAANAAPTQGFKMIA |
Ga0126383_100961694 | 3300010398 | Tropical Forest Soil | MERFIADLVKQFEGGAIDRREFCQTVALAAAVYATGDAANAQTGTGFK |
Ga0134123_132348502 | 3300010403 | Terrestrial Soil | MERFIADLVKKYESGAINRREFCQTVTLAATVYAAGDAAHAQAP |
Ga0137388_109705072 | 3300012189 | Vadose Zone Soil | MERCIADLVQGLDGGKIDRREFCQAVALAAAVYGAGDAAQAQAQRGFKIIG |
Ga0137364_106081961 | 3300012198 | Vadose Zone Soil | MERFIADLVQDFESGKINRRQFCETVALAATVYAAGEEAANA |
Ga0137382_110748271 | 3300012200 | Vadose Zone Soil | MERFIADLVKDFDSGKVDRREFCQTVALAAMVYAA |
Ga0137399_114596411 | 3300012203 | Vadose Zone Soil | MERFIANLVKDFEAGKITRRQVCEGVAIAATVYGAGGAAK |
Ga0137381_100845451 | 3300012207 | Vadose Zone Soil | MERFIADLVQDFESGKINRRQFCETVALAATVYAA |
Ga0150985_1198681013 | 3300012212 | Avena Fatua Rhizosphere | MERFIADLVKKFETGAVDRREFCQTVSLAAAVYAAGDAAQAQTGT |
Ga0137368_101366071 | 3300012358 | Vadose Zone Soil | MERFIADLVKNYESGAIDRREFCKTVALAATVYAAGDAAKA |
Ga0137385_111155701 | 3300012359 | Vadose Zone Soil | MERFIAGLVKDFETGKMTRRQFGEAVAIAAIVYGYGTDAK |
Ga0137360_111875371 | 3300012361 | Vadose Zone Soil | MERFIADLVKDYESGKIDRREFCKTVALAATVYAAGDTAMAQAPRG |
Ga0137416_110124671 | 3300012927 | Vadose Zone Soil | MERFIADLVKDYESGKVDRREFCKTVALAATVYAA |
Ga0137404_106246671 | 3300012929 | Vadose Zone Soil | MERLIADLVKKFESGAVSRREFCETVALAATVYAAGDA |
Ga0126375_107025832 | 3300012948 | Tropical Forest Soil | MERFIADLVRNFESGRIKRRQFCEAVTLAATVYAAGDAAKAQPARGL |
Ga0126369_100908464 | 3300012971 | Tropical Forest Soil | MERFIADLVQGLDSGKIDRREFCKSVALAAAVYGAGDAARAQVQRGFK |
Ga0126369_101077824 | 3300012971 | Tropical Forest Soil | MERFIANLVEGLDTGAIDRREFCKAVALAAAVYGAG |
Ga0157380_110888202 | 3300014326 | Switchgrass Rhizosphere | MERFIADLFKDFESGKVSRRQFCETVALAATVYAAGDA |
Ga0137412_113216241 | 3300015242 | Vadose Zone Soil | MERFVAGLVDDLESGKMDRRQFCQTMALAATVYAAGETAANAAASQ |
Ga0182041_105213511 | 3300016294 | Soil | MERFIAGLVKDYQTGRIDRREFCQTVALAAAVYGAGSAANAQNTGKGFK |
Ga0181505_108274072 | 3300016750 | Peatland | MERFIADLVEDLDKGQIDRREFCQAVALAAAVYGAGEAAQAQEA |
Ga0134083_103451141 | 3300017659 | Grasslands Soil | MERFIADMVQDFESGKINRRQFCETVALAATVYAAGEEAAN |
Ga0187808_102420331 | 3300017942 | Freshwater Sediment | MERFIADLVQGLDSGKIDRREFCKSVALAAAVYGA |
Ga0187782_113470352 | 3300017975 | Tropical Peatland | MERFIADLVKAFEAGKLSRREFCQTVALAASVYAA |
Ga0187823_100438603 | 3300017993 | Freshwater Sediment | MERFIADLVKRFESGKMDRREFCQTVALAATVFAAGDAAHAQ |
Ga0187787_101824242 | 3300018029 | Tropical Peatland | MERFIADLVKQFEGGAIDRREFCQTVALAAAVYAAGDAA |
Ga0184620_100790052 | 3300018051 | Groundwater Sediment | MERFIADLVKQFEGGAIDRREFCQTVTLAAAVYAASDGLST |
Ga0187765_109486522 | 3300018060 | Tropical Peatland | MERFIDNLVQGLDRGAIDRREFCQAMALAAAVYGVGEAAQAQASR |
Ga0187772_110666722 | 3300018085 | Tropical Peatland | MERFIADLVRAFEAGKLSRREFCQTVALAATVYAAGDTADAQ |
Ga0066662_113798862 | 3300018468 | Grasslands Soil | MERFIADLVKQFEGGAIDRREFCQTVALAAAAYAAGD |
Ga0066669_105552142 | 3300018482 | Grasslands Soil | MEKFIANLVKNFESGQIDRREFCQTVALAATVYAAGDAANA |
Ga0210403_113976361 | 3300020580 | Soil | MERFIADLVKSFESGKVDRREFCKTVALAATVYAAADAAQ |
Ga0210401_111038251 | 3300020583 | Soil | MEQFFADLVKDFENGRINRRQFCETVALAATVYAA |
Ga0210394_100691284 | 3300021420 | Soil | MERFVADLVKSFESGKIDRREFCQTIALAATVYAAGDAAHA |
Ga0210394_107153362 | 3300021420 | Soil | MERFIADLVKDFDSGKVDRREFCQTVALAAVVYASGEAANA |
Ga0126371_134774051 | 3300021560 | Tropical Forest Soil | MERFIADLVQGLDRGRIDRREFCQAVALAAAVYSAGD |
Ga0213853_107814642 | 3300021861 | Watersheds | MERFIADLVKGFESGKLSRREFCETVALAATVYAAGDAANAQPARGFKL |
Ga0207663_106955382 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | MERFIAGLVKDFEAGKLSRREFCEAVALAAVVYGAGDAAKA |
Ga0207700_116621182 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MERFIADLVKSFESGKLDRREFCKTVALAATVYAAGDAAQAQAP |
Ga0207664_116801201 | 3300025929 | Agricultural Soil | MERFIAGLVKDFEAGKLSRREFCEAVALAAVVYGAGDAAKAA |
Ga0209375_12983892 | 3300026329 | Soil | MERFIADLVKNFESGKINRRQFCETVALAATVYAAGEEAANA |
Ga0257172_10001817 | 3300026482 | Soil | MERFIAGLVKDFERGKLDRREFCQTVALAAAVYGAGDA |
Ga0209056_100805941 | 3300026538 | Soil | MERFIADLVQDFESGKINRRQFCETVALAATVYAAGEEAANAAPSQGFKM |
Ga0208042_11270212 | 3300027568 | Peatlands Soil | MERFIAGLVNDFERGTVDRREFCQTVALAAVVYGAG |
Ga0209073_102282262 | 3300027765 | Agricultural Soil | MEKFISGLVKDFEAGKITRRDFCEAVALAAIVYGAGDAANAATAKGFKM |
Ga0209465_102303231 | 3300027874 | Tropical Forest Soil | MECFIADLVQGLDSGRIDRREFCQAVALAAAVYGAGDA |
Ga0209465_105167702 | 3300027874 | Tropical Forest Soil | MERFIAGLVKDFESGKLDRREFCQTVALAAVVYGAGEAANAQVARGFK |
Ga0209068_108216042 | 3300027894 | Watersheds | MERFISNLVQGLDSGEIDRREFCKAVVLAAAVYGAGD |
Ga0209624_104025621 | 3300027895 | Forest Soil | MERFIADLVGDYERGKVDRSEFCKTVALAATVYAAGDTARAQAPRGLK |
Ga0209488_102836721 | 3300027903 | Vadose Zone Soil | MERFIAGLVKDFESGKMDRREFCQTVALAAAVYGAGDAANAQATRGFK |
Ga0207428_103924561 | 3300027907 | Populus Rhizosphere | MERFIADLVKDFESGKVSRRQFCETVALAATVYAAGDAAQAAPA |
Ga0207428_109506222 | 3300027907 | Populus Rhizosphere | MERFIADLVKQFEGGAIDRREFCQTVALAAAVYAAGDAANAQTG |
Ga0307287_101163061 | 3300028796 | Soil | MERFIADLVKQFEGGAIDRREFCQTVVLAAAVYAAGDAANAQ |
Ga0310686_1007590032 | 3300031708 | Soil | MERFIADLVKGFESGKLSRREFCETVALAATVYAAGDAANAQPA |
Ga0310686_1178947422 | 3300031708 | Soil | MERFIADLVKNFESGKLSRREFCETVALAATVYAAGDAANA |
Ga0307476_108081311 | 3300031715 | Hardwood Forest Soil | MERFIAGLVKDFEAGKITRRQFCEAVALAAAVYGFGDAAKAAPARG |
Ga0307469_104778491 | 3300031720 | Hardwood Forest Soil | MERFIADLVRNFESGRINRRQFCESVALAASVYAMGDAANAQTS |
Ga0318521_102627271 | 3300031770 | Soil | MERFIAGLVKDFESGKVDRREFCKTVALAATVYAAGDAAQAQPTRGFKV |
Ga0310122_103896782 | 3300031800 | Marine | VEQFIADLVKEYECGKIDRRRFCETVGIAAVVYAAGEGAANAA |
Ga0310124_101827962 | 3300031804 | Marine | VEQFIADLVKEYECGKIDRRRFCETVGIAAVVYAAGEGAANAT |
Ga0306925_122304322 | 3300031890 | Soil | MERFIADLVKNYESGKVNRREFCQTVALAATVYAAGDAAKAQAPRGLK |
Ga0318536_100607231 | 3300031893 | Soil | MERFIAGLVRDFESGKVDRREFCKTIALAATVYAAGDAAEAQPARGFKV |
Ga0306923_109250972 | 3300031910 | Soil | MERFIADLVQGLDNGRIDRREFCQAVALAAAVYGAG |
Ga0318505_102057291 | 3300032060 | Soil | MERFIAGLVKDFESGKVDRREFCKTVALAATVYAAD |
Ga0318553_102563813 | 3300032068 | Soil | MERFIAGLVKDFESGKVDRREFCKTVALAATVYAAGDAAQAQ |
Ga0306920_1015535031 | 3300032261 | Soil | MERFIADLVKSFESGKMDRREFCQTVALAATVYAAGDAANAQAPSGMK |
Ga0306920_1022601561 | 3300032261 | Soil | MERFIADLVQGLDSGKIDRREFCKAVALAAAVYGAGDAAQAQAQRGF |
Ga0306920_1032430702 | 3300032261 | Soil | MERFIAGLVKDFEAGKITRRQFGEGVAIAATVYGFGDAAKAAPAKGMK |
Ga0306920_1039682572 | 3300032261 | Soil | MERFIADLVRDYESGKVDRREFCKTVALAATVYAAGDAATAQA |
Ga0310914_109485981 | 3300033289 | Soil | MERFIAGLVKDFESGKVGRREFCQTVALAAVVYGAGE |
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