Basic Information | |
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Family ID | F096260 |
Family Type | Metagenome |
Number of Sequences | 105 |
Average Sequence Length | 47 residues |
Representative Sequence | RESWRYHFMLHQFVSNTPTALAKVEARKAGGMDAVKKEQGRS |
Number of Associated Samples | 95 |
Number of Associated Scaffolds | 105 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.95 % |
% of genes near scaffold ends (potentially truncated) | 97.14 % |
% of genes from short scaffolds (< 2000 bps) | 100.00 % |
Associated GOLD sequencing projects | 93 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.53 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (63.810 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.429 % of family members) |
Environment Ontology (ENVO) | Unclassified (31.429 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (41.905 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.43% β-sheet: 0.00% Coil/Unstructured: 48.57% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.53 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Anoxic Zone Freshwater Sediment Aqueous Watersheds Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Terrestrial Surface Soil Peatlands Soil Soil Agricultural Soil Arctic Peat Soil Soil Grasslands Soil Soil Soil Soil Soil Soil Natural And Restored Wetlands Rice Paddy Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Fen Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Wastewater |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI20177J14857_10349122 | 3300001397 | Arctic Peat Soil | TAEAIKASVNHMLDSAGQRESWRFHFVIHQFVSNTPTALGRLETRREGGMDAVKREQREGS* |
Ga0062595_1008174202 | 3300004479 | Soil | YHFMVHQFVSNTATALNATEARKQGGMDAVKQEQAGDKRS* |
Ga0062595_1019679921 | 3300004479 | Soil | LMGQRESWRYHFMLHQFVSNTPTALAKVEARKAGGMEAVKKEQGRS* |
Ga0062592_1019192942 | 3300004480 | Soil | DGQGQRESWQYHFMVHQFVSASATAVNATEARKQGGMDAVKQEQAGGGSSA* |
Ga0062591_1020373632 | 3300004643 | Soil | WRYHFMLHQFVSNTPTALAKVDARKAGGMDAVKREQGKR* |
Ga0062594_1024829492 | 3300005093 | Soil | SWQYHFMVHQFVSNTATALNATEARKQGGMDAVKQEQAGEQRS* |
Ga0068869_1014933002 | 3300005334 | Miscanthus Rhizosphere | AIKDTINHTVDRMGQRESWQYHFMVHQFVSNSAEATGRTEARRAGGMDAVKAEQAGDTPT |
Ga0070688_1015340191 | 3300005365 | Switchgrass Rhizosphere | QRDSWRYHFMVHQFVSNTETALARTEARKAGGMDAVKAEQAGESA* |
Ga0070703_101489262 | 3300005406 | Corn, Switchgrass And Miscanthus Rhizosphere | YHFMVHQFVSNSATALNATEARKQGGMDAVKQEQAGAKSPSA* |
Ga0070713_1008251932 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MGQRESWRYHFMLHQFVSNTPTALAKTEARKSGGMDAVKKEQRGSA* |
Ga0070741_107194722 | 3300005529 | Surface Soil | RESWKYHFMLHQFVSNTPTALAKTEARRAGGMDAVKAEQQRGDA* |
Ga0066701_105087072 | 3300005552 | Soil | SWRYHFMIHQFVSNTATALDAAETRQKGGMDSVRAEQRGEKS* |
Ga0066700_102286712 | 3300005559 | Soil | HQFVSNTATALDAAETRQKGGMDSVRAEQRGEKS* |
Ga0070664_1023853362 | 3300005564 | Corn Rhizosphere | VKASINHMVDGIGQRESWRYHFMLHQFVSNTPTALAKVDARKAGGMDAVKREQAGVQEKR |
Ga0066654_107998501 | 3300005587 | Soil | WRYHFMIHQFVSNTATALDAAETRQKGGMDSVRAEQRGEKS* |
Ga0070702_1015548182 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | GQRESWQYHFMVHQFVSNTAEATGRTEARRAGGMDAVKAEQAGDAPT* |
Ga0068859_1024075672 | 3300005617 | Switchgrass Rhizosphere | HFMLHQFVSNTPTALAKVDARKAGGMDAVKREQGKS* |
Ga0068864_1026329362 | 3300005618 | Switchgrass Rhizosphere | ESWQYHFMVHQFVSNSAEATGRTEARRAGGMDAVKAEQAGAAPTH* |
Ga0068866_106212282 | 3300005718 | Miscanthus Rhizosphere | QRESWQYHFMVHQFVSNSATALNATEARKQGGMDAVKQEQAGAKSPSA* |
Ga0075292_10494392 | 3300005887 | Rice Paddy Soil | ESWKYHFMVHQFVSNTATALGAMETRKQGGMDAVKAEQRGDQ* |
Ga0075023_1004950571 | 3300006041 | Watersheds | ESWRYHFMLHQFVSNTPTALAKVEARRAGGMDAVKKEQGRS* |
Ga0075024_1006988182 | 3300006047 | Watersheds | KDTINHTVDTMGQRESWRYHFMVHQHVSNSPEALSRVEARRAGGMDAVRAEQAGDTT* |
Ga0075017_1006871962 | 3300006059 | Watersheds | TAEMVKSSINHMVDGMGQRESWKYHFMLHQFVSNTPTALEKVEARKQGGMDAVKKEQSGTQGKR* |
Ga0079220_101504064 | 3300006806 | Agricultural Soil | YHFMIHQFVSNTATALDAAEVRQKGGMDSVRAEQRGEKS* |
Ga0075421_1023947342 | 3300006845 | Populus Rhizosphere | RMGQRDSWRHHFMVHQFVSNTPTALGLMRERAAGGMEHVKREQAGPKP* |
Ga0075434_1009154772 | 3300006871 | Populus Rhizosphere | EMVKASINHMVDGMGQRESWRYHFMLHQFVSNTPTALAKVEARKQGGMDAVKREQGTS* |
Ga0105240_116185172 | 3300009093 | Corn Rhizosphere | DGMGQRESWRYHFMLHQFVSNTPTALAKVDARKAGGMDAVKREQGKR* |
Ga0105247_106398482 | 3300009101 | Switchgrass Rhizosphere | QGQRESWQYHFMVHQFVSNSATALNATEARKQGGMDAVKREQGAS* |
Ga0066709_1022250411 | 3300009137 | Grasslands Soil | RESWRYHFMLHQFVSNTPTALAKVEARKAGGMDAVKKEQGRS* |
Ga0111538_124411642 | 3300009156 | Populus Rhizosphere | VINHMVDGQGQRESWQYHFMVHQFVSASATAVNATEARKQGGMDAVKQEQAGGGSSA* |
Ga0111538_131192831 | 3300009156 | Populus Rhizosphere | DGMGQRESWRYHFMLHQFVSNTPTALSKVEDRKRGGMDAVKKEQRGE* |
Ga0105241_120509951 | 3300009174 | Corn Rhizosphere | DTINHTVDRMGQRESWQYHFMVHQFVSNSAEATGRAEARRAGGMDAVKAEQAGE* |
Ga0105242_103268202 | 3300009176 | Miscanthus Rhizosphere | ALTAEMVKASINHMVDGMGQRESWRYHFMLHQFVSNTPTALAKVDARKAGGMDAVKREQGKR* |
Ga0116219_102380292 | 3300009824 | Peatlands Soil | FVSNTPTALAKVDARKQGGMDAVKREQSGEQDNP* |
Ga0131077_105225971 | 3300009873 | Wastewater | QRESWRYHFMVHQFVSNTSVALDRTEARRAGGMDAVKAEQRGETSR* |
Ga0126380_116795432 | 3300010043 | Tropical Forest Soil | YHFMIHQFVSNTPTALDRAEARRQGGMDAVKREQKG* |
Ga0134082_102675512 | 3300010303 | Grasslands Soil | TAEMVKESINHMVDGMGQRESWRYHFMLHQFVSNTPTALAKVEARKQGGMDAVKREQGKTERRPQAER* |
Ga0126376_120644781 | 3300010359 | Tropical Forest Soil | RESWRYHFMVHQYVSNTATALHAAQAREKGGMEAVRAEQRGNQS* |
Ga0134127_137325861 | 3300010399 | Terrestrial Soil | MLHQFVSNTPTALAKVEARKEGGMDAVKREQGAS* |
Ga0134122_127558932 | 3300010400 | Terrestrial Soil | WRYHFMLHQFVSNTPTALAKVEARKHGGMDAVKREQGTS* |
Ga0120192_100998912 | 3300012021 | Terrestrial | GQRDSWRHHFIVHQFVSNTETALGLMRERMAGGMDHVKREQAGDLQ* |
Ga0137370_108637852 | 3300012285 | Vadose Zone Soil | VKASINHMVDGMGQRESWRYHFMLHQFVSNTPTALAKVEARKAGGMEAVKKEQGRS* |
Ga0164299_115687781 | 3300012958 | Soil | QYHFMVNQFVSNTAEATGRTEARRVGGMDAVKAEQAGESAKP* |
Ga0164302_106812902 | 3300012961 | Soil | RESWQYHFMVHQFVSNSAEATGRTEARRAGGVDAVKAEQAGDAPT* |
Ga0164306_117038352 | 3300012988 | Soil | FMLHQFVSNTPTALAKVEARKQGGMDAVKREQGTS* |
Ga0163162_120596062 | 3300013306 | Switchgrass Rhizosphere | WQYHFMVHQFVSNSAEATGRTEARRAGGMDAVRAEQAGESSR* |
Ga0157375_113105022 | 3300013308 | Miscanthus Rhizosphere | LDGQGQRDSWRYHFMVHQFVSNTETALARTEARKAGGMDAVKAEQAGESAKP* |
Ga0134079_103066342 | 3300014166 | Grasslands Soil | FMLHQFVSNTATALDAGEARQKGGMDSVRAEQRGENA* |
Ga0075303_11226781 | 3300014299 | Natural And Restored Wetlands | YHFMLHQFVSNTPTALSKVEARKAGGMDAVKKEQQG* |
Ga0163163_125576152 | 3300014325 | Switchgrass Rhizosphere | WQYHFMVHQFVSNTAEATGRTEARRAGGMDAVKAEQAGESATS* |
Ga0157380_132958401 | 3300014326 | Switchgrass Rhizosphere | MVHQFVSNSATALNATEARKQGGMDAVKQEQAGAKSPSA* |
Ga0157377_112693591 | 3300014745 | Miscanthus Rhizosphere | MVKASINHMVDGMGQRESWRYHFMLHQFVSNTPTALAKVEARKEGGMDAVKREQGAS* |
Ga0157377_113218161 | 3300014745 | Miscanthus Rhizosphere | SWRHHFMIHQFVSNTATALGAASTRAAGGMDAVKAEQRGEPGSGGPRR* |
Ga0132255_1008259712 | 3300015374 | Arabidopsis Rhizosphere | KDVINHMVDGQGQRESWQYHFMVHQFVSNSATALNATEARKQGGMDAVKQEQAGAKSTSA |
Ga0182040_113591101 | 3300016387 | Soil | FMIHQLVSNTATALAASEARSQGGMDAVKREQAGR |
Ga0190265_113623101 | 3300018422 | Soil | PAATAEAIKTSVNNMLDTAGQRESWRFHFVIHQFVSNTPTALDRLDARREGGMDAVKRERGRA |
Ga0190265_124256721 | 3300018422 | Soil | QRESWQYHFMVHQFVSNSAEALGRTEARRQGGMDAVRAEQAGESEPT |
Ga0190272_101994332 | 3300018429 | Soil | INHMVDRMGQRDSWRYHFALHQFVSNTPTALARAEVRKAGGMDAVRAEQAGEQSK |
Ga0190275_128149061 | 3300018432 | Soil | MIDGMGQRESWRYHFMLHQFVSNTPTALAKVDARKASGMDAVKREQGKR |
Ga0190275_129338301 | 3300018432 | Soil | DTAGQRDSWRYHFMVHQFVSNTADALGRTDARREGGMDAVRAEQADRS |
Ga0190271_103953303 | 3300018481 | Soil | AVKASINNMVDGMGQRENWRYHFMLHQFVSNTPTALAKVETRKAGGMDAVKKEQQG |
Ga0210397_104826951 | 3300021403 | Soil | RDSWRYHFMIHQLVSNTATALAASEARSKGGMDAVKREQAGR |
Ga0194048_102139742 | 3300021519 | Anoxic Zone Freshwater | HTIDRMGQRDSWKYHFMVHQFVSNTAMATGATEARREGGMDAVKKEQAGR |
Ga0208424_10432241 | 3300025445 | Aqueous | YHFMVHQFVSASDTATSAMSSRKEGGMDAVKKEQAGK |
Ga0207645_102920861 | 3300025907 | Miscanthus Rhizosphere | DGQGQRESWQYHFMVHQFVSNSATALNATEARKQGGMDAVKQEQAGAKSPSA |
Ga0207662_107708402 | 3300025918 | Switchgrass Rhizosphere | LTAEMVKASINHMVDGMGQRESWRYHFMLHQFVSNTPTALAKVEARKHGGMDAVKREQGT |
Ga0207669_119669272 | 3300025937 | Miscanthus Rhizosphere | VDGMGQRESWRYHFMLHQFVSNTPTALEKVEARKQGGMDAVKREQGAS |
Ga0207691_116347031 | 3300025940 | Miscanthus Rhizosphere | WRYHFVLHQFVSNTPTALERTEARKAGGMDAVKREQKS |
Ga0207689_111453231 | 3300025942 | Miscanthus Rhizosphere | YHFMLHQFVSNTPTALAKVEARKEGGMDAIKKEQR |
Ga0207712_115937502 | 3300025961 | Switchgrass Rhizosphere | WRYHFMLHQFVSNTPTALAKVDARKAGGMDAVKREQGNS |
Ga0207640_117167501 | 3300025981 | Corn Rhizosphere | PLTAEAVKASINNMVDGMGQRESWRYHFMLHQFVSNTPTALERVEARKAGGMDAVKKEQR |
Ga0207639_122858382 | 3300026041 | Corn Rhizosphere | VDRMGQRESWQYHFMVHQFVSNSAEATGRTEARRAGGMDAVKAEQAGDTPT |
Ga0207648_107317472 | 3300026089 | Miscanthus Rhizosphere | MLDGAGQRESWRFHFVLHQFVSNTPTALDRVEARREGGIDAVKREQQGPT |
Ga0207648_113582032 | 3300026089 | Miscanthus Rhizosphere | MGQRESWQYHFMVHQFVSNSAEATGRTEARRAGGMDAVKAEQAGE |
Ga0207648_116532171 | 3300026089 | Miscanthus Rhizosphere | YHFMVHQFVSNTAEATGRTEARRVGGMDAVKAEQAGESAKP |
Ga0207676_119254221 | 3300026095 | Switchgrass Rhizosphere | RMGQRESWQYHFMVHQFVSNSAEATGRTEARRAGGMDAVKAEQAGAAPTH |
Ga0208993_10371952 | 3300027480 | Forest Soil | HMVDGMGQRESWRYHFMLHQFVSNTPTALAKTEARKAGGMDAVKKEQGRS |
Ga0207428_104182591 | 3300027907 | Populus Rhizosphere | VHQFVSNSATALNATEARKQGGMDAVKQEQAGAKSPSA |
Ga0302263_101098411 | 3300028869 | Fen | RYHFMVHQLVSASATATGALETRKQGGMDAVKKEQAGGKRKS |
Ga0311347_108466541 | 3300029923 | Fen | QYHFMVHQFVSASATATGALETRKEGGMDAVKKEQAGGGSGQAS |
Ga0311337_117699472 | 3300030000 | Fen | ESWKYHFMLHQFVSNTPTALEKVEARKQGGMDAVKKEQSGAQETS |
Ga0311349_108682701 | 3300030294 | Fen | VNHTLDTMGQHEAWKYHFMVHQLVSASATATGALESRKEGGMDAVKKEQAGP |
Ga0311366_108724911 | 3300030943 | Fen | ESWKYHFMVHQFVSNTPTALDKVEARKAGGMDAVRREQSS |
Ga0311366_110035581 | 3300030943 | Fen | SWKYHFMLHQFVSNTPTALEKVEARKQGGMDAVKKEQSGAQETS |
Ga0307501_102719052 | 3300031152 | Soil | FMLHQFVSNTPTALAKVDARKAGGMDAVKKEQGRS |
Ga0299914_102860091 | 3300031228 | Soil | GQRESWRYHFALHQFVSNTPTALERVEARKAGGMDAVKREQQQG |
Ga0265320_104289542 | 3300031240 | Rhizosphere | DGMGQRESWKYHFMLHQFVSNTPTALAKVEARKQGGMDAVKNEQSGAQDTH |
Ga0318516_108667701 | 3300031543 | Soil | YHFMIHQLVSNTATALAASEARSQGGMDAVKREQAGR |
Ga0318555_101115471 | 3300031640 | Soil | QRDSWRYHFMIHQLVSNTATALAASEARSQGGMDAVKREQAGR |
Ga0318496_108157362 | 3300031713 | Soil | RYHFMIHQLVSNTATALAASEARSQGGMDAVKREQAGR |
Ga0310813_104369502 | 3300031716 | Soil | SINHMVDGMGQRESWRYHFMIHQFVSNTPTALERAEARKQGGMDAVKREQQG |
Ga0302321_1006520831 | 3300031726 | Fen | NHMVDGMGQRESWQYHFMLHQFVSNTPTALSKVEARKQGGMDAVKKEQR |
Ga0302321_1017718552 | 3300031726 | Fen | RESWKYHFMLHQFVSNTPTALEKVEARKQGGMDAVKKEQSGAQETS |
Ga0318494_108428252 | 3300031751 | Soil | MGQRESWRYHFMLHQFVSNTPTALAKVEARKQGGMEAVKKEQAGSAD |
Ga0315288_102920801 | 3300031772 | Sediment | QAIKDTIKHMIDGQGQRESWRYHFMVHQFVSNSATALAATDARKEGGAGKSVMDAVKREQAGE |
Ga0318512_104456741 | 3300031846 | Soil | RRDRRDQGDSWRYHFMIHQLVSNTATALAASEARSRGGMDAVKREQAGR |
Ga0302322_1013716811 | 3300031902 | Fen | LDSWRHHFVVHQFVSNTDTALGMMAARTAGGMDAVKREQRGE |
Ga0302322_1021232961 | 3300031902 | Fen | HTLDTAGQRDSWRYHFMVHQFVSNTADALGRTDARREGGMDAVRAEQADRT |
Ga0310897_104527421 | 3300032003 | Soil | VTAAAVKDTINHTLDVAGQRESWRYHFMLHQFVSNTPTALAKVEARKEGGMDAVKREQGA |
Ga0310890_115615542 | 3300032075 | Soil | MGQRESWRYHFMLHQFVSNTPTALAKVDARKAGGMDAVKREQASS |
Ga0311301_126860392 | 3300032160 | Peatlands Soil | WRYHFMIHQFVSNTATALAASEGRKQGGMDAVKREQAGR |
Ga0310812_103102621 | 3300032421 | Soil | DGMGQRESWRYHFMIHQFVSNTPTALERVEARKQGGMDAVKREQQG |
Ga0315273_116551822 | 3300032516 | Sediment | MVHQFVSNTATATGALEARKEGGMDAVKKEQAGGAAK |
Ga0335085_123784841 | 3300032770 | Soil | INHMVDRMGQRDSWKYHFALHQFVSNTPTALAKSEARKAGGMEAVRAEQQRGDVK |
Ga0335082_104842512 | 3300032782 | Soil | SWRYHFMLHQFVSNTPTALAKVEARKQGGMDAVMREQGKTARRPQAEH |
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