NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F096260

Metagenome Family F096260

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096260
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 47 residues
Representative Sequence RESWRYHFMLHQFVSNTPTALAKVEARKAGGMDAVKKEQGRS
Number of Associated Samples 95
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.95 %
% of genes near scaffold ends (potentially truncated) 97.14 %
% of genes from short scaffolds (< 2000 bps) 100.00 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (63.810 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(11.429 % of family members)
Environment Ontology (ENVO) Unclassified
(31.429 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(41.905 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76
1JGI20177J14857_10349122
2Ga0062595_1008174202
3Ga0062595_1019679921
4Ga0062592_1019192942
5Ga0062591_1020373632
6Ga0062594_1024829492
7Ga0068869_1014933002
8Ga0070688_1015340191
9Ga0070703_101489262
10Ga0070713_1008251932
11Ga0070741_107194722
12Ga0066701_105087072
13Ga0066700_102286712
14Ga0070664_1023853362
15Ga0066654_107998501
16Ga0070702_1015548182
17Ga0068859_1024075672
18Ga0068864_1026329362
19Ga0068866_106212282
20Ga0075292_10494392
21Ga0075023_1004950571
22Ga0075024_1006988182
23Ga0075017_1006871962
24Ga0079220_101504064
25Ga0075421_1023947342
26Ga0075434_1009154772
27Ga0105240_116185172
28Ga0105247_106398482
29Ga0066709_1022250411
30Ga0111538_124411642
31Ga0111538_131192831
32Ga0105241_120509951
33Ga0105242_103268202
34Ga0116219_102380292
35Ga0131077_105225971
36Ga0126380_116795432
37Ga0134082_102675512
38Ga0126376_120644781
39Ga0134127_137325861
40Ga0134122_127558932
41Ga0120192_100998912
42Ga0137370_108637852
43Ga0164299_115687781
44Ga0164302_106812902
45Ga0164306_117038352
46Ga0163162_120596062
47Ga0157375_113105022
48Ga0134079_103066342
49Ga0075303_11226781
50Ga0163163_125576152
51Ga0157380_132958401
52Ga0157377_112693591
53Ga0157377_113218161
54Ga0132255_1008259712
55Ga0182040_113591101
56Ga0190265_113623101
57Ga0190265_124256721
58Ga0190272_101994332
59Ga0190275_128149061
60Ga0190275_129338301
61Ga0190271_103953303
62Ga0210397_104826951
63Ga0194048_102139742
64Ga0208424_10432241
65Ga0207645_102920861
66Ga0207662_107708402
67Ga0207669_119669272
68Ga0207691_116347031
69Ga0207689_111453231
70Ga0207712_115937502
71Ga0207640_117167501
72Ga0207639_122858382
73Ga0207648_107317472
74Ga0207648_113582032
75Ga0207648_116532171
76Ga0207676_119254221
77Ga0208993_10371952
78Ga0207428_104182591
79Ga0302263_101098411
80Ga0311347_108466541
81Ga0311337_117699472
82Ga0311349_108682701
83Ga0311366_108724911
84Ga0311366_110035581
85Ga0307501_102719052
86Ga0299914_102860091
87Ga0265320_104289542
88Ga0318516_108667701
89Ga0318555_101115471
90Ga0318496_108157362
91Ga0310813_104369502
92Ga0302321_1006520831
93Ga0302321_1017718552
94Ga0318494_108428252
95Ga0315288_102920801
96Ga0318512_104456741
97Ga0302322_1013716811
98Ga0302322_1021232961
99Ga0310897_104527421
100Ga0310890_115615542
101Ga0311301_126860392
102Ga0310812_103102621
103Ga0315273_116551822
104Ga0335085_123784841
105Ga0335082_104842512
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 51.43%    β-sheet: 0.00%    Coil/Unstructured: 48.57%
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Variant

510152025303540RESWRYHFMLHQFVSNTPTALAKVEARKAGGMDAVKKEQGRSSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
36.2%63.8%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Anoxic Zone Freshwater
Sediment
Aqueous
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Terrestrial
Surface Soil
Peatlands Soil
Soil
Agricultural Soil
Arctic Peat Soil
Soil
Grasslands Soil
Soil
Soil
Soil
Soil
Soil
Natural And Restored Wetlands
Rice Paddy Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Fen
Arabidopsis Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Wastewater
2.9%11.4%4.8%2.9%5.7%2.9%9.5%2.9%5.7%4.8%2.9%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20177J14857_103491223300001397Arctic Peat SoilTAEAIKASVNHMLDSAGQRESWRFHFVIHQFVSNTPTALGRLETRREGGMDAVKREQREGS*
Ga0062595_10081742023300004479SoilYHFMVHQFVSNTATALNATEARKQGGMDAVKQEQAGDKRS*
Ga0062595_10196799213300004479SoilLMGQRESWRYHFMLHQFVSNTPTALAKVEARKAGGMEAVKKEQGRS*
Ga0062592_10191929423300004480SoilDGQGQRESWQYHFMVHQFVSASATAVNATEARKQGGMDAVKQEQAGGGSSA*
Ga0062591_10203736323300004643SoilWRYHFMLHQFVSNTPTALAKVDARKAGGMDAVKREQGKR*
Ga0062594_10248294923300005093SoilSWQYHFMVHQFVSNTATALNATEARKQGGMDAVKQEQAGEQRS*
Ga0068869_10149330023300005334Miscanthus RhizosphereAIKDTINHTVDRMGQRESWQYHFMVHQFVSNSAEATGRTEARRAGGMDAVKAEQAGDTPT
Ga0070688_10153401913300005365Switchgrass RhizosphereQRDSWRYHFMVHQFVSNTETALARTEARKAGGMDAVKAEQAGESA*
Ga0070703_1014892623300005406Corn, Switchgrass And Miscanthus RhizosphereYHFMVHQFVSNSATALNATEARKQGGMDAVKQEQAGAKSPSA*
Ga0070713_10082519323300005436Corn, Switchgrass And Miscanthus RhizosphereMGQRESWRYHFMLHQFVSNTPTALAKTEARKSGGMDAVKKEQRGSA*
Ga0070741_1071947223300005529Surface SoilRESWKYHFMLHQFVSNTPTALAKTEARRAGGMDAVKAEQQRGDA*
Ga0066701_1050870723300005552SoilSWRYHFMIHQFVSNTATALDAAETRQKGGMDSVRAEQRGEKS*
Ga0066700_1022867123300005559SoilHQFVSNTATALDAAETRQKGGMDSVRAEQRGEKS*
Ga0070664_10238533623300005564Corn RhizosphereVKASINHMVDGIGQRESWRYHFMLHQFVSNTPTALAKVDARKAGGMDAVKREQAGVQEKR
Ga0066654_1079985013300005587SoilWRYHFMIHQFVSNTATALDAAETRQKGGMDSVRAEQRGEKS*
Ga0070702_10155481823300005615Corn, Switchgrass And Miscanthus RhizosphereGQRESWQYHFMVHQFVSNTAEATGRTEARRAGGMDAVKAEQAGDAPT*
Ga0068859_10240756723300005617Switchgrass RhizosphereHFMLHQFVSNTPTALAKVDARKAGGMDAVKREQGKS*
Ga0068864_10263293623300005618Switchgrass RhizosphereESWQYHFMVHQFVSNSAEATGRTEARRAGGMDAVKAEQAGAAPTH*
Ga0068866_1062122823300005718Miscanthus RhizosphereQRESWQYHFMVHQFVSNSATALNATEARKQGGMDAVKQEQAGAKSPSA*
Ga0075292_104943923300005887Rice Paddy SoilESWKYHFMVHQFVSNTATALGAMETRKQGGMDAVKAEQRGDQ*
Ga0075023_10049505713300006041WatershedsESWRYHFMLHQFVSNTPTALAKVEARRAGGMDAVKKEQGRS*
Ga0075024_10069881823300006047WatershedsKDTINHTVDTMGQRESWRYHFMVHQHVSNSPEALSRVEARRAGGMDAVRAEQAGDTT*
Ga0075017_10068719623300006059WatershedsTAEMVKSSINHMVDGMGQRESWKYHFMLHQFVSNTPTALEKVEARKQGGMDAVKKEQSGTQGKR*
Ga0079220_1015040643300006806Agricultural SoilYHFMIHQFVSNTATALDAAEVRQKGGMDSVRAEQRGEKS*
Ga0075421_10239473423300006845Populus RhizosphereRMGQRDSWRHHFMVHQFVSNTPTALGLMRERAAGGMEHVKREQAGPKP*
Ga0075434_10091547723300006871Populus RhizosphereEMVKASINHMVDGMGQRESWRYHFMLHQFVSNTPTALAKVEARKQGGMDAVKREQGTS*
Ga0105240_1161851723300009093Corn RhizosphereDGMGQRESWRYHFMLHQFVSNTPTALAKVDARKAGGMDAVKREQGKR*
Ga0105247_1063984823300009101Switchgrass RhizosphereQGQRESWQYHFMVHQFVSNSATALNATEARKQGGMDAVKREQGAS*
Ga0066709_10222504113300009137Grasslands SoilRESWRYHFMLHQFVSNTPTALAKVEARKAGGMDAVKKEQGRS*
Ga0111538_1244116423300009156Populus RhizosphereVINHMVDGQGQRESWQYHFMVHQFVSASATAVNATEARKQGGMDAVKQEQAGGGSSA*
Ga0111538_1311928313300009156Populus RhizosphereDGMGQRESWRYHFMLHQFVSNTPTALSKVEDRKRGGMDAVKKEQRGE*
Ga0105241_1205099513300009174Corn RhizosphereDTINHTVDRMGQRESWQYHFMVHQFVSNSAEATGRAEARRAGGMDAVKAEQAGE*
Ga0105242_1032682023300009176Miscanthus RhizosphereALTAEMVKASINHMVDGMGQRESWRYHFMLHQFVSNTPTALAKVDARKAGGMDAVKREQGKR*
Ga0116219_1023802923300009824Peatlands SoilFVSNTPTALAKVDARKQGGMDAVKREQSGEQDNP*
Ga0131077_1052259713300009873WastewaterQRESWRYHFMVHQFVSNTSVALDRTEARRAGGMDAVKAEQRGETSR*
Ga0126380_1167954323300010043Tropical Forest SoilYHFMIHQFVSNTPTALDRAEARRQGGMDAVKREQKG*
Ga0134082_1026755123300010303Grasslands SoilTAEMVKESINHMVDGMGQRESWRYHFMLHQFVSNTPTALAKVEARKQGGMDAVKREQGKTERRPQAER*
Ga0126376_1206447813300010359Tropical Forest SoilRESWRYHFMVHQYVSNTATALHAAQAREKGGMEAVRAEQRGNQS*
Ga0134127_1373258613300010399Terrestrial SoilMLHQFVSNTPTALAKVEARKEGGMDAVKREQGAS*
Ga0134122_1275589323300010400Terrestrial SoilWRYHFMLHQFVSNTPTALAKVEARKHGGMDAVKREQGTS*
Ga0120192_1009989123300012021TerrestrialGQRDSWRHHFIVHQFVSNTETALGLMRERMAGGMDHVKREQAGDLQ*
Ga0137370_1086378523300012285Vadose Zone SoilVKASINHMVDGMGQRESWRYHFMLHQFVSNTPTALAKVEARKAGGMEAVKKEQGRS*
Ga0164299_1156877813300012958SoilQYHFMVNQFVSNTAEATGRTEARRVGGMDAVKAEQAGESAKP*
Ga0164302_1068129023300012961SoilRESWQYHFMVHQFVSNSAEATGRTEARRAGGVDAVKAEQAGDAPT*
Ga0164306_1170383523300012988SoilFMLHQFVSNTPTALAKVEARKQGGMDAVKREQGTS*
Ga0163162_1205960623300013306Switchgrass RhizosphereWQYHFMVHQFVSNSAEATGRTEARRAGGMDAVRAEQAGESSR*
Ga0157375_1131050223300013308Miscanthus RhizosphereLDGQGQRDSWRYHFMVHQFVSNTETALARTEARKAGGMDAVKAEQAGESAKP*
Ga0134079_1030663423300014166Grasslands SoilFMLHQFVSNTATALDAGEARQKGGMDSVRAEQRGENA*
Ga0075303_112267813300014299Natural And Restored WetlandsYHFMLHQFVSNTPTALSKVEARKAGGMDAVKKEQQG*
Ga0163163_1255761523300014325Switchgrass RhizosphereWQYHFMVHQFVSNTAEATGRTEARRAGGMDAVKAEQAGESATS*
Ga0157380_1329584013300014326Switchgrass RhizosphereMVHQFVSNSATALNATEARKQGGMDAVKQEQAGAKSPSA*
Ga0157377_1126935913300014745Miscanthus RhizosphereMVKASINHMVDGMGQRESWRYHFMLHQFVSNTPTALAKVEARKEGGMDAVKREQGAS*
Ga0157377_1132181613300014745Miscanthus RhizosphereSWRHHFMIHQFVSNTATALGAASTRAAGGMDAVKAEQRGEPGSGGPRR*
Ga0132255_10082597123300015374Arabidopsis RhizosphereKDVINHMVDGQGQRESWQYHFMVHQFVSNSATALNATEARKQGGMDAVKQEQAGAKSTSA
Ga0182040_1135911013300016387SoilFMIHQLVSNTATALAASEARSQGGMDAVKREQAGR
Ga0190265_1136231013300018422SoilPAATAEAIKTSVNNMLDTAGQRESWRFHFVIHQFVSNTPTALDRLDARREGGMDAVKRERGRA
Ga0190265_1242567213300018422SoilQRESWQYHFMVHQFVSNSAEALGRTEARRQGGMDAVRAEQAGESEPT
Ga0190272_1019943323300018429SoilINHMVDRMGQRDSWRYHFALHQFVSNTPTALARAEVRKAGGMDAVRAEQAGEQSK
Ga0190275_1281490613300018432SoilMIDGMGQRESWRYHFMLHQFVSNTPTALAKVDARKASGMDAVKREQGKR
Ga0190275_1293383013300018432SoilDTAGQRDSWRYHFMVHQFVSNTADALGRTDARREGGMDAVRAEQADRS
Ga0190271_1039533033300018481SoilAVKASINNMVDGMGQRENWRYHFMLHQFVSNTPTALAKVETRKAGGMDAVKKEQQG
Ga0210397_1048269513300021403SoilRDSWRYHFMIHQLVSNTATALAASEARSKGGMDAVKREQAGR
Ga0194048_1021397423300021519Anoxic Zone FreshwaterHTIDRMGQRDSWKYHFMVHQFVSNTAMATGATEARREGGMDAVKKEQAGR
Ga0208424_104322413300025445AqueousYHFMVHQFVSASDTATSAMSSRKEGGMDAVKKEQAGK
Ga0207645_1029208613300025907Miscanthus RhizosphereDGQGQRESWQYHFMVHQFVSNSATALNATEARKQGGMDAVKQEQAGAKSPSA
Ga0207662_1077084023300025918Switchgrass RhizosphereLTAEMVKASINHMVDGMGQRESWRYHFMLHQFVSNTPTALAKVEARKHGGMDAVKREQGT
Ga0207669_1196692723300025937Miscanthus RhizosphereVDGMGQRESWRYHFMLHQFVSNTPTALEKVEARKQGGMDAVKREQGAS
Ga0207691_1163470313300025940Miscanthus RhizosphereWRYHFVLHQFVSNTPTALERTEARKAGGMDAVKREQKS
Ga0207689_1114532313300025942Miscanthus RhizosphereYHFMLHQFVSNTPTALAKVEARKEGGMDAIKKEQR
Ga0207712_1159375023300025961Switchgrass RhizosphereWRYHFMLHQFVSNTPTALAKVDARKAGGMDAVKREQGNS
Ga0207640_1171675013300025981Corn RhizospherePLTAEAVKASINNMVDGMGQRESWRYHFMLHQFVSNTPTALERVEARKAGGMDAVKKEQR
Ga0207639_1228583823300026041Corn RhizosphereVDRMGQRESWQYHFMVHQFVSNSAEATGRTEARRAGGMDAVKAEQAGDTPT
Ga0207648_1073174723300026089Miscanthus RhizosphereMLDGAGQRESWRFHFVLHQFVSNTPTALDRVEARREGGIDAVKREQQGPT
Ga0207648_1135820323300026089Miscanthus RhizosphereMGQRESWQYHFMVHQFVSNSAEATGRTEARRAGGMDAVKAEQAGE
Ga0207648_1165321713300026089Miscanthus RhizosphereYHFMVHQFVSNTAEATGRTEARRVGGMDAVKAEQAGESAKP
Ga0207676_1192542213300026095Switchgrass RhizosphereRMGQRESWQYHFMVHQFVSNSAEATGRTEARRAGGMDAVKAEQAGAAPTH
Ga0208993_103719523300027480Forest SoilHMVDGMGQRESWRYHFMLHQFVSNTPTALAKTEARKAGGMDAVKKEQGRS
Ga0207428_1041825913300027907Populus RhizosphereVHQFVSNSATALNATEARKQGGMDAVKQEQAGAKSPSA
Ga0302263_1010984113300028869FenRYHFMVHQLVSASATATGALETRKQGGMDAVKKEQAGGKRKS
Ga0311347_1084665413300029923FenQYHFMVHQFVSASATATGALETRKEGGMDAVKKEQAGGGSGQAS
Ga0311337_1176994723300030000FenESWKYHFMLHQFVSNTPTALEKVEARKQGGMDAVKKEQSGAQETS
Ga0311349_1086827013300030294FenVNHTLDTMGQHEAWKYHFMVHQLVSASATATGALESRKEGGMDAVKKEQAGP
Ga0311366_1087249113300030943FenESWKYHFMVHQFVSNTPTALDKVEARKAGGMDAVRREQSS
Ga0311366_1100355813300030943FenSWKYHFMLHQFVSNTPTALEKVEARKQGGMDAVKKEQSGAQETS
Ga0307501_1027190523300031152SoilFMLHQFVSNTPTALAKVDARKAGGMDAVKKEQGRS
Ga0299914_1028600913300031228SoilGQRESWRYHFALHQFVSNTPTALERVEARKAGGMDAVKREQQQG
Ga0265320_1042895423300031240RhizosphereDGMGQRESWKYHFMLHQFVSNTPTALAKVEARKQGGMDAVKNEQSGAQDTH
Ga0318516_1086677013300031543SoilYHFMIHQLVSNTATALAASEARSQGGMDAVKREQAGR
Ga0318555_1011154713300031640SoilQRDSWRYHFMIHQLVSNTATALAASEARSQGGMDAVKREQAGR
Ga0318496_1081573623300031713SoilRYHFMIHQLVSNTATALAASEARSQGGMDAVKREQAGR
Ga0310813_1043695023300031716SoilSINHMVDGMGQRESWRYHFMIHQFVSNTPTALERAEARKQGGMDAVKREQQG
Ga0302321_10065208313300031726FenNHMVDGMGQRESWQYHFMLHQFVSNTPTALSKVEARKQGGMDAVKKEQR
Ga0302321_10177185523300031726FenRESWKYHFMLHQFVSNTPTALEKVEARKQGGMDAVKKEQSGAQETS
Ga0318494_1084282523300031751SoilMGQRESWRYHFMLHQFVSNTPTALAKVEARKQGGMEAVKKEQAGSAD
Ga0315288_1029208013300031772SedimentQAIKDTIKHMIDGQGQRESWRYHFMVHQFVSNSATALAATDARKEGGAGKSVMDAVKREQAGE
Ga0318512_1044567413300031846SoilRRDRRDQGDSWRYHFMIHQLVSNTATALAASEARSRGGMDAVKREQAGR
Ga0302322_10137168113300031902FenLDSWRHHFVVHQFVSNTDTALGMMAARTAGGMDAVKREQRGE
Ga0302322_10212329613300031902FenHTLDTAGQRDSWRYHFMVHQFVSNTADALGRTDARREGGMDAVRAEQADRT
Ga0310897_1045274213300032003SoilVTAAAVKDTINHTLDVAGQRESWRYHFMLHQFVSNTPTALAKVEARKEGGMDAVKREQGA
Ga0310890_1156155423300032075SoilMGQRESWRYHFMLHQFVSNTPTALAKVDARKAGGMDAVKREQASS
Ga0311301_1268603923300032160Peatlands SoilWRYHFMIHQFVSNTATALAASEGRKQGGMDAVKREQAGR
Ga0310812_1031026213300032421SoilDGMGQRESWRYHFMIHQFVSNTPTALERVEARKQGGMDAVKREQQG
Ga0315273_1165518223300032516SedimentMVHQFVSNTATATGALEARKEGGMDAVKKEQAGGAAK
Ga0335085_1237848413300032770SoilINHMVDRMGQRDSWKYHFALHQFVSNTPTALAKSEARKAGGMEAVRAEQQRGDVK
Ga0335082_1048425123300032782SoilSWRYHFMLHQFVSNTPTALAKVEARKQGGMDAVMREQGKTARRPQAEH


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