Metagenome / Metatranscriptome Family F096235

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F096235
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	65 residues
Representative Sequence	MLMLLNLMLQRVRDERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLQSQVNAAGS
Number of Associated Samples	86
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.76 %
% of genes near scaffold ends (potentially truncated)	25.71 %
% of genes from short scaffolds (< 2000 bps)	81.90 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (59.048 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (22.857 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (33.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 68.09% β-sheet: 0.00% Coil/Unstructured: 31.91%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF07811	TadE	40.00
PF02954	HTH_8	11.43
PF16976	RcpC	2.86
PF13629	T2SS-T3SS_pil_N	2.86
PF13400	Tad	0.95
PF00106	adh_short	0.95
PF13614	AAA_31	0.95
PF08448	PAS_4	0.95
PF13561	adh_short_C2	0.95
PF04015	DUF362	0.95
PF08666	SAF	0.95
PF01464	SLT	0.95
PF02739	5_3_exonuc_N	0.95
PF02156	Glyco_hydro_26	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	0.95
COG2006	Uncharacterized conserved protein, DUF362 family	Function unknown [S]	0.95
COG4124	Beta-mannanase	Carbohydrate transport and metabolism [G]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.05 %
Unclassified	root	N/A	40.95 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.05 %
Unclassified	root	N/A	40.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.05 %
Unclassified	root	N/A	40.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.95 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	25.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.19 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.95 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	25.71 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.90 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.95 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	23.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.95 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	23.81 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.95 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	23.81 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0625924	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1211	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105015930	Not Available	716	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105780739	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1537	Open in IMG/M
3300000443\|F12B_11189722	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	828	Open in IMG/M
3300000550\|F24TB_12725064	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	885	Open in IMG/M
3300000955\|JGI1027J12803_107744573	All Organisms → cellular organisms → Bacteria → Proteobacteria	1637	Open in IMG/M
3300000955\|JGI1027J12803_108572154	Not Available	1360	Open in IMG/M
3300001431\|F14TB_102041643	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	626	Open in IMG/M
3300003987\|Ga0055471_10030810	All Organisms → cellular organisms → Bacteria → Proteobacteria	1364	Open in IMG/M
3300003987\|Ga0055471_10101231	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300003998\|Ga0055472_10280350	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300004114\|Ga0062593_100018355	All Organisms → cellular organisms → Bacteria → Proteobacteria	3601	Open in IMG/M
3300004463\|Ga0063356_102638793	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	772	Open in IMG/M
3300004633\|Ga0066395_10664238	Not Available	616	Open in IMG/M
3300005293\|Ga0065715_10833288	Not Available	598	Open in IMG/M
3300005295\|Ga0065707_10273223	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300005332\|Ga0066388_101065552	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300005332\|Ga0066388_101491249	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1182	Open in IMG/M
3300005332\|Ga0066388_102118613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1012	Open in IMG/M
3300005332\|Ga0066388_103784204	Not Available	772	Open in IMG/M
3300005340\|Ga0070689_101742562	All Organisms → cellular organisms → Bacteria → Proteobacteria	567	Open in IMG/M
3300005467\|Ga0070706_101211550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M
3300005530\|Ga0070679_101432292	All Organisms → cellular organisms → Bacteria → Proteobacteria	637	Open in IMG/M
3300005764\|Ga0066903_102480326	Not Available	1004	Open in IMG/M
3300006049\|Ga0075417_10013657	All Organisms → cellular organisms → Bacteria → Proteobacteria	3089	Open in IMG/M
3300006049\|Ga0075417_10684044	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300006058\|Ga0075432_10091064	Not Available	1116	Open in IMG/M
3300006844\|Ga0075428_100000562	All Organisms → cellular organisms → Bacteria	38031	Open in IMG/M
3300006844\|Ga0075428_101712434	All Organisms → cellular organisms → Bacteria → Proteobacteria	656	Open in IMG/M
3300006847\|Ga0075431_101717057	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
3300006852\|Ga0075433_10239190	All Organisms → cellular organisms → Bacteria → Proteobacteria	1612	Open in IMG/M
3300006852\|Ga0075433_10654772	Not Available	921	Open in IMG/M
3300006854\|Ga0075425_102106923	Not Available	629	Open in IMG/M
3300006865\|Ga0073934_10000174	All Organisms → cellular organisms → Bacteria	192193	Open in IMG/M
3300006894\|Ga0079215_10213415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	989	Open in IMG/M
3300006894\|Ga0079215_11715196	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300006904\|Ga0075424_101340646	Not Available	760	Open in IMG/M
3300006969\|Ga0075419_10185577	All Organisms → cellular organisms → Bacteria → Proteobacteria	1372	Open in IMG/M
3300009100\|Ga0075418_10001875	All Organisms → cellular organisms → Bacteria	23911	Open in IMG/M
3300009100\|Ga0075418_11452429	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	744	Open in IMG/M
3300009147\|Ga0114129_11003385	Not Available	1051	Open in IMG/M
3300009147\|Ga0114129_12535897	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	612	Open in IMG/M
3300010043\|Ga0126380_10294796	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1150	Open in IMG/M
3300010043\|Ga0126380_10346283	Not Available	1080	Open in IMG/M
3300010048\|Ga0126373_11604485	Not Available	715	Open in IMG/M
3300010048\|Ga0126373_12457447	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	580	Open in IMG/M
3300010362\|Ga0126377_13572706	Not Available	503	Open in IMG/M
3300010398\|Ga0126383_12442592	Not Available	607	Open in IMG/M
3300012208\|Ga0137376_10228780	Not Available	1611	Open in IMG/M
3300012360\|Ga0137375_11381868	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300012948\|Ga0126375_11337200	Not Available	604	Open in IMG/M
3300012971\|Ga0126369_13070586	Not Available	547	Open in IMG/M
3300013306\|Ga0163162_10663930	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1166	Open in IMG/M
3300014254\|Ga0075312_1021086	Not Available	1142	Open in IMG/M
3300014259\|Ga0075311_1004322	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2302	Open in IMG/M
3300014268\|Ga0075309_1029154	Not Available	1208	Open in IMG/M
3300014302\|Ga0075310_1057297	Not Available	768	Open in IMG/M
3300015371\|Ga0132258_11168065	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1946	Open in IMG/M
3300015372\|Ga0132256_103423463	Not Available	533	Open in IMG/M
3300018052\|Ga0184638_1015162	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2664	Open in IMG/M
3300018053\|Ga0184626_10014923	All Organisms → cellular organisms → Bacteria	3093	Open in IMG/M
3300018056\|Ga0184623_10192862	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	938	Open in IMG/M
3300018075\|Ga0184632_10089145	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1349	Open in IMG/M
3300018078\|Ga0184612_10415631	Not Available	674	Open in IMG/M
3300020063\|Ga0180118_1146635	Not Available	669	Open in IMG/M
3300021560\|Ga0126371_13161862	Not Available	557	Open in IMG/M
3300025155\|Ga0209320_10434122	Not Available	520	Open in IMG/M
3300025310\|Ga0209172_10000179	All Organisms → cellular organisms → Bacteria	192205	Open in IMG/M
3300025559\|Ga0210087_1028587	Not Available	1130	Open in IMG/M
3300025791\|Ga0210115_1056730	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	828	Open in IMG/M
3300025910\|Ga0207684_10000177	All Organisms → cellular organisms → Bacteria	104811	Open in IMG/M
3300025912\|Ga0207707_10043113	All Organisms → cellular organisms → Bacteria	3937	Open in IMG/M
3300025930\|Ga0207701_10546615	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	989	Open in IMG/M
3300026535\|Ga0256867_10026615	All Organisms → cellular organisms → Bacteria	2442	Open in IMG/M
3300026535\|Ga0256867_10084819	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300027647\|Ga0214468_1140599	Not Available	607	Open in IMG/M
3300027873\|Ga0209814_10018834	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2787	Open in IMG/M
3300027873\|Ga0209814_10234597	Not Available	794	Open in IMG/M
3300027880\|Ga0209481_10000968	All Organisms → cellular organisms → Bacteria	11643	Open in IMG/M
3300027886\|Ga0209486_10315726	Not Available	924	Open in IMG/M
3300027907\|Ga0207428_11179874	Not Available	533	Open in IMG/M
3300027909\|Ga0209382_10501828	Not Available	1336	Open in IMG/M
3300027909\|Ga0209382_10555484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	1256	Open in IMG/M
3300028592\|Ga0247822_10178750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1577	Open in IMG/M
3300028809\|Ga0247824_10211807	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1063	Open in IMG/M
3300030606\|Ga0299906_10002542	All Organisms → cellular organisms → Bacteria	15128	Open in IMG/M
3300030619\|Ga0268386_10901689	Not Available	554	Open in IMG/M
3300031229\|Ga0299913_10510211	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300031548\|Ga0307408_100025037	All Organisms → cellular organisms → Bacteria	4083	Open in IMG/M
3300031548\|Ga0307408_100158337	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1796	Open in IMG/M
3300031740\|Ga0307468_100600719	Not Available	898	Open in IMG/M
3300031820\|Ga0307473_10791736	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	675	Open in IMG/M
3300031852\|Ga0307410_10511822	Not Available	989	Open in IMG/M
3300031901\|Ga0307406_11474335	Not Available	598	Open in IMG/M
3300032002\|Ga0307416_102437402	Not Available	622	Open in IMG/M
3300032005\|Ga0307411_11513113	Not Available	617	Open in IMG/M
3300032013\|Ga0310906_10040907	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2206	Open in IMG/M
3300032075\|Ga0310890_11030970	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	663	Open in IMG/M
3300032179\|Ga0310889_10704908	Not Available	527	Open in IMG/M
3300033407\|Ga0214472_10046670	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4398	Open in IMG/M
3300033550\|Ga0247829_10072838	All Organisms → cellular organisms → Bacteria	2503	Open in IMG/M
3300034479\|Ga0314785_009265	Not Available	700	Open in IMG/M
3300034667\|Ga0314792_155288	Not Available	614	Open in IMG/M
3300034667\|Ga0314792_231115	Not Available	532	Open in IMG/M
3300034669\|Ga0314794_118085	Not Available	586	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.52%
Host-Associated	Host-Associated	30.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.14%
Plants	Host-Associated → Plants	30.48%
Aquatic	Environmental → Aquatic	12.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.67%
Marine	Environmental → Aquatic → Marine	4.76%
Sediment	Environmental → Aquatic → Sediment	4.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.81%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.90%
Freshwater	Environmental → Aquatic → Freshwater	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.71%
Loam	Environmental → Terrestrial → Soil → Loam	13.33%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.81%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.19%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.71%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	4.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.81%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.86%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	20.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	5.71%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	4.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.81%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.86%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.90%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014259	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1	Environmental	Open in IMG/M
3300014268	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1	Environmental	Open in IMG/M
3300014302	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025155	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 4	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025791	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034479	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034667	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034669	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_06259243	3300000033	Soil	MLMLLNLMLQKVRDERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLQSQVNAAGS*
INPhiseqgaiiFebDRAFT_1050159302	3300000364	Soil	MQMLLNYVVRKAQDERGVVSVEWILLGAVVMAAIVVAFAPSFRTMLTNAVTDIGAVLSGQLAQAGS*
INPhiseqgaiiFebDRAFT_1057807392	3300000364	Soil	MLTMLTMLNVLAPRLRNQRGVVSMEWIILGAVVMAAIVAAFAPQFGTALTGAVTAIGDQLTTQIGKAGS*
F12B_111897222	3300000443	Soil	MLMLLNLWLQRVRSERGVVSVEWIILGAVVMAAIVLAFAPTFQQALKDAVKAISDQLQAQVGNAGS*
F24TB_127250641	3300000550	Soil	MLMLLNLMLQRIRNERGVVSVEWIILGAVIMAAIVVAFAPTFNAALIAAVNAI
JGI1027J12803_1077445732	3300000955	Soil	MLTMLTMLTMLNVLAPRLRNQRGVVSMEWIILGAVVMAAIVAAFAPQFGTALTGAVTAIG
JGI1027J12803_1085721544	3300000955	Soil	ADLLTRRRKAMQMLLNYVVRKAQDERGVVSVEWILLGAVVMAAIVVAFAPSFRTMLTNAVTDIGA
F14TB_1020416432	3300001431	Soil	LLNYVVRKAQDERGVVSVEWILLGAVVMAAIVVAFAPSFRTMLTNAVTDIGAVLSGQLAQAGS*
Ga0055471_100308102	3300003987	Natural And Restored Wetlands	MLTMISVLVQALRDKRGVVSVEWIILGAVVMAAIVAAFAPTFETALTDSVTAIGAQLMSNVNGAATP*
Ga0055471_101012311	3300003987	Natural And Restored Wetlands	LLNLMLQKVREERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLQTQVNAAGS*
Ga0055472_102803501	3300003998	Natural And Restored Wetlands	MLTMISVLVQALRDKRGVVSVEWIILGAVVMAAIVAAFAPTFQNALTTAVGAIGSELQTQVTGS*
Ga0062593_1000183555	3300004114	Soil	MLMLLNLMLQRVRDERGVVSVEWIILGAVIMAAIVLAFAPTFQGQLSAAVTAIGAQLQSQVSAAGS*
Ga0063356_1026387932	3300004463	Arabidopsis Thaliana Rhizosphere	MLLNLMLQRVRDERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLQSQVNAAGS*
Ga0066395_106642381	3300004633	Tropical Forest Soil	MLNVLMQRLRNERGVVSVEWIILGAVVMAGIVLAFAPTFKTSLTTAVTAIGTQLTTHVNAAGS*
Ga0065715_108332881	3300005293	Miscanthus Rhizosphere	MLMLLNLMLQRVRDERGVVSVEWIILGAVIMAAIVLAFAPTFQGQLSAAVTAIGAQLQSQVSAA
Ga0065707_102732231	3300005295	Switchgrass Rhizosphere	MLTMLSVLVQAFRDRRGVVSVEWIILGAVVMAAIVAAFAPTFGNALTTAVTTIGTTLQTQIGNAGS*
Ga0066388_1010655523	3300005332	Tropical Forest Soil	MLTMLTMLSVLLQPLRNQRGVVSVEWIILGAVVMAAIVLAFAPQFQGALTTAVTAIGTQLQTQVNAAGS*
Ga0066388_1014912493	3300005332	Tropical Forest Soil	MLMLLNLMLQRVRSERGVVSMEWIILGAVIMAAIVLAFAPTFRTALTDAVTAISNQLQAQVSAAGS*
Ga0066388_1021186132	3300005332	Tropical Forest Soil	MITMLTMLNVLMQRLRNERGVVSVEWIILGAVVMAAIVLAFAPTFKTSLTTAVTAIGTQLTTHVNAAGS*
Ga0066388_1037842041	3300005332	Tropical Forest Soil	MLMLLNSVLRKVRNNRGVVSMEWIILGAVVMAAIVLAFAPTFRTALTTAVTAISGELQSQITAGSSAGSGS*
Ga0070689_1017425622	3300005340	Switchgrass Rhizosphere	MLMLLNLMLQRVRDERGVVSVEWIILDAVIMAAIVLAFAPTFQGQLSAAVTAIGAQLQSQVSAAGS*
Ga0070706_1012115502	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLTMLNVLVQSLRNQRGVVSVEWIILGAVIMAAIVAAFAPTFQTQLTNAVTAIGQQLQTQVGNAGS*
Ga0070679_1014322921	3300005530	Corn Rhizosphere	LMLQRVRDERGVVSVEWIILGAVIMAAIVLAFAPTFQGQLSAAVTAIGAQLQSQVSAAGS
Ga0066903_1024803262	3300005764	Tropical Forest Soil	MITMLNVLMQRLRNERGVVSVEWIILGAVVMAAIVLAFAPTFKTSLTTAVTAIGTQLTTHVNAAGS*
Ga0075417_100136572	3300006049	Populus Rhizosphere	MLTMLTMLNVLVQRLRNERGVVSVEWIILGAVIMAAIVLAFAPNFQNALTTAVQAIGTQLQTQVSNAGS*
Ga0075417_106840441	3300006049	Populus Rhizosphere	NLMLQKVRDERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLQSQVNAAGS*
Ga0075432_100910642	3300006058	Populus Rhizosphere	MLTMLTMLTSLIRPLRNDRGVVSMEWIILGAVVMAAIVLAFAPTFKTALTTAVTAIGNELQTQITAAGS*
Ga0075428_10000056216	3300006844	Populus Rhizosphere	MLMLLNLMLQRIRNERGVVSVEWIILGAVIMAAIVLAFAPQFQAALTAAVTAIGTQLQTQVSTAGS*
Ga0075428_1017124341	3300006844	Populus Rhizosphere	MLLNLMLQKVRDERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLQSQVNAAGS*
Ga0075431_1017170571	3300006847	Populus Rhizosphere	RRTMLMLLNLMLQKVRDERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLQSQVNAAGS*
Ga0075433_102391903	3300006852	Populus Rhizosphere	MFMLLNLMLQRVRGERGVVSVEWIILAAVVMAAIVLAFAPTFKTALTDAVTAISDQ
Ga0075433_106547722	3300006852	Populus Rhizosphere	MLTMLNVLMQRLRNERGVVSVEWIILGAVVMAAIVLAFAPAFKTALTNAVTAIGTQLQTHVANAGS*
Ga0075425_1021069231	3300006854	Populus Rhizosphere	MFMLLNLMLQKVRGERGVVSVEWIILAAVIMAAIVLAFAPAFQQALTTAVQAVSAQL
Ga0073934_1000017432	3300006865	Hot Spring Sediment	MMTILTLTSMLMDRMVRPARDQRGVVSVEWIILGAVVMAAIVLAFAPQFQGALTTAVTAIGTQLQAQVNAAGS*
Ga0079215_102134151	3300006894	Agricultural Soil	MLTMISVLVQALRDKRGVVSVEWIILGAVVMAAIVLAFAPNFQTALITAVTAIGGQLQTQVGAAGS*
Ga0079215_117151962	3300006894	Agricultural Soil	MLMLLNVMLPKLQKVNNERGVVSVEWIILGAVIMAAIVLAFAPTFNTALTAAVTAIGAQLQANVGLAGS*
Ga0075424_1013406461	3300006904	Populus Rhizosphere	MFMLLNLMLQKVRGERGVVSVEWIILAAVVMAAIVLAFAPTFKTALTDAVTAISDQLQTNVKAGS*
Ga0075419_101855771	3300006969	Populus Rhizosphere	MLLNLMLQKVRDERVVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLQSQVNAAGS*
Ga0075418_1000187520	3300009100	Populus Rhizosphere	MTGNTQEERNQMLMLLNLMLQRIRNERGVVSVEWIILGAVIMAAIVLAFAPQFQAALTAAVTAIGTQLQTQVSTAGS*
Ga0075418_114524291	3300009100	Populus Rhizosphere	MLMLLNLMLQTIRNERGVVSVEWIILGAVIMAAIVLAFAPQFQAALTTAVTAIGTQLQTQVTTAGS*
Ga0114129_110033851	3300009147	Populus Rhizosphere	MLSVLVQAFRDRRGVVSVEWIILGAVVMAAIVAAFAPTFGNALTTAVTTIGTTLQTQIGNAGS*
Ga0114129_125358972	3300009147	Populus Rhizosphere	MFMLLNLMLQRVRGERGVVSVEWIILAAVIMAAIVLAFAPAFQQALTTAVQAVSAQLQTQVGNAGS*
Ga0126380_102947962	3300010043	Tropical Forest Soil	MLMLLNSVLRKVRNNRGVVSMEWIILGAVVMAAIVLAFAPTFRTALTTAVTAISGELQAQITAGSSAGSGS*
Ga0126380_103462832	3300010043	Tropical Forest Soil	MLMLLNLMLQRVRGERGVVSVEWIILAAVVMAAIVLAFAPAFQTALTTAVQAIATQLQTNVNAAS*
Ga0126373_116044852	3300010048	Tropical Forest Soil	MLTIITMLTSLLRPVRNQRGVVSVEWIILAAVIMAAIVAAFAPTFKTQLTNAVTAIGNELTTQITNAGS*
Ga0126373_124574471	3300010048	Tropical Forest Soil	PMLTMLTMLSVLLQPLRNQRGVVSVEWIILGAVVMAAIVLAFAPQFQGALTTAVTAIGTQLQTQVNAAGS*
Ga0126377_135727061	3300010362	Tropical Forest Soil	MLMLLNLMLQRIQNERGVVSVEWIILGAVVMGAIVLAFAPTFQTALTTAVTAISAQLQANVAAGS*
Ga0126383_124425922	3300010398	Tropical Forest Soil	MLTMLTMLSVLLQPLRNQRGVVSVEWIILGAVVMAAIVLAFAPQFQGALTTAVTAIGTQLQT
Ga0137376_102287803	3300012208	Vadose Zone Soil	MLIMLNVLLQSFRNQRGVVSMEWIILGAVVMAAIVAAFAPQFGTALTTAVGAIGTKLTTTVNTGS*
Ga0137375_113818682	3300012360	Vadose Zone Soil	MLMLLNLVLQRIRNERGVVSVEWIILGAVIMAAIVLAFAPTFQTQLTAAVTAIGAQLQTQVGLAGS*
Ga0126375_113372001	3300012948	Tropical Forest Soil	MLMLLNLWLQRVRSERGVVSVEWIILAAVVMAAIVIAFAPTFQTALTDAVNAISAQLKANVAAAS*
Ga0126369_130705862	3300012971	Tropical Forest Soil	MLTMLTMLNVLVQRLRNERGVVSVEWIILGAVVMAAIVLAFAPQFQTALTTAVGAIGTQLQTQVNSAGS*
Ga0163162_106639302	3300013306	Switchgrass Rhizosphere	MLMLLNLMLQRVRDERGVVSVECIILNTVIMAAIVLAFAPTFQGQLSAAVTAIGAQLQSQVSAAGS*
Ga0075312_10210862	3300014254	Natural And Restored Wetlands	MLNMISALVQAFRDRRGVVSVEWIILGAVVMAAIVAAFAPTFRTQLTNAVTAIGGQLNSQITAAGGTGS*
Ga0075311_10043223	3300014259	Natural And Restored Wetlands	MLTMINVLVQALRDKRGVVSVEWIILGAVVMAAIVAAFAPTFETALTDSVTAIGDQLMSNVNGAATP*
Ga0075309_10291543	3300014268	Natural And Restored Wetlands	MLTMISVLVQALRDKRGVVSVEWIILGAVVMAAIVAAFAPTFETALTDSVTAIGAQLMSN
Ga0075310_10572972	3300014302	Natural And Restored Wetlands	MLTMISVLVQALRDKRGVVSVEWIILGAVVMAAIVAAFAPTFETALTDSVTAIGAQLMSNVNGAAAP*
Ga0132258_111680654	3300015371	Arabidopsis Rhizosphere	MLTMLTMLTGLIRPLRNDRGVVSMEWIILGAVVMAAIVLAFAPTFKTALTTAVTAIGNELQTQITAAGS*
Ga0132256_1034234631	3300015372	Arabidopsis Rhizosphere	MLMLLNLLGQRVRNERGVVSVEWIILAIVIMVAIVAAFAPTFQTALTNGVNAVS
Ga0184638_10151623	3300018052	Groundwater Sediment	MLMLLNLVLQRIRDERGVVSVEWIILGAVIMAAIVLAFAPTFNTQLTAAVTAIGAQLQAQVGAAGS
Ga0184626_100149232	3300018053	Groundwater Sediment	MLILLNLMLQRVRGERGVVSVEWIILGAVIMAAIVLAFAPTFNTQLTAAVTAIGAQLQAQVGAAGS
Ga0184623_101928621	3300018056	Groundwater Sediment	MLMLLNLMLQRVRGERGVVSVEWIILGAVIMAAIVLAFAPTFNTQLTAAVTAIGAQLQAQVGAAGS
Ga0184632_100891452	3300018075	Groundwater Sediment	MLMLLNLVLQRIRGERGVVSVEWIILGAVIMAAIVGAFAPTFTTQLTAAVTAIGAQLVTQVGLAGS
Ga0184612_104156312	3300018078	Groundwater Sediment	MLILLNLMLQRVRDERGVVSVEWIILGAVIMVAIVGAFAPALTLMLTNAVAAIGTTLTTQIGLAGS
Ga0180118_11466352	3300020063	Groundwater Sediment	MLTMLSLMVQAFGDRRGVVSVEWIILAAVVMSVIVAAFLPQFTAAITTAVTTIGTTLNTQAGS
Ga0126371_131618621	3300021560	Tropical Forest Soil	MITMLTMLNVLMQRLRNERGVVSVEWIILGAVVMAAIVLAFAPTFKTSLTTAVTAIGTQLTTHVNAAGS
Ga0209320_104341221	3300025155	Soil	MLMLVNLMLQRVRDERGVVSVEWIILGAVIMAAIVLAFAPTFNTALTQAVTDIGNQLSTQVNAA
Ga0209172_1000017930	3300025310	Hot Spring Sediment	MMTILTLTSMLMDRMVRPARDQRGVVSVEWIILGAVVMAAIVLAFAPQFQGALTTAVTAIGTQLQAQVNAAGS
Ga0210087_10285872	3300025559	Natural And Restored Wetlands	MLTMISVLVQALRDKRGVVSVEWIILGAVVMAAIVAAFAPTFETALTDSVTAIGAQLMSNVNGAATP
Ga0210115_10567302	3300025791	Natural And Restored Wetlands	MLTMISVLVQALRDKRGVVSVEWIILGAVVMAAIVAAFAPTFETALTDSVTAIGDQLMSNVNGAATP
Ga0207684_100001777	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MLTMLTMLNVLTQRLRNERGVVSVEWIILGAVIMAAIVAAFAPTFKTQLTNAVTAIGQELITQVGNAGS
Ga0207707_100431132	3300025912	Corn Rhizosphere	MLMLLNLMLQRVRDERGVVSVEWIILGAVIMAAIVLAFAPTFQGQLSAAVTAIGAQLQSQVSAAGS
Ga0207701_105466153	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MLMLLNLMLQRVRDERGVVSVEWIILGAVIMAAIVLAFAPTFQGQLSAAVTAIGAQL
Ga0256867_100266153	3300026535	Soil	MLMLLNLMLQKAQDERGVVSVEWIILGAVIMAAIVGAFAPAFGTMLTGAVSALQTALTTAMP
Ga0256867_100848193	3300026535	Soil	MLMLVNLMLQRVRDERGVVSVEWIILGAVIMAAIVLAFAPTFNTALTQAVTDIGNQLSTQVNAAGS
Ga0214468_11405992	3300027647	Soil	MLILLNLMLQRVRDQRGVVSVEWIILGAVIMAAIVLAFAPTFTTQLTNAVTAIGAQLQTQVTAAGS
Ga0209814_100188343	3300027873	Populus Rhizosphere	MLTMLTMLNVLVQRLRNERGVVSVEWIILGAVIMAAIVLAFAPNFQNALTTAVQAIGTQLQTQVSNAGS
Ga0209814_102345973	3300027873	Populus Rhizosphere	MLMLLNLWLQRVRSERGVVSVEWIILGAVVMAAIVLAFAPTFQQALKDAVKAISDQLQAQVGNAGS
Ga0209481_100009685	3300027880	Populus Rhizosphere	MLMLLNLMLQRIRNERGVVSVEWIILGAVIMAAIVLAFAPQFQAALTAAVTAIGTQLQTQVSTAGS
Ga0209486_103157262	3300027886	Agricultural Soil	MLMLLNVMLPKLQKVNNERGVVSVEWIILGAVIMAAIVLAFAPTFNTALTAAVTAIGAQLQANVGLAGS
Ga0207428_111798741	3300027907	Populus Rhizosphere	TSLIRPLRNDRGVVSMEWIILGAVVMAAIVLAFAPTFKTALTTAVTAIGNELQTQITAAG
Ga0209382_105018282	3300027909	Populus Rhizosphere	MLTMLSVLVQAFRDRRGVVSVEWIILGAVVMAAIVAAFAPTFGNALTTAVTTIGTTLQTQIGNAGS
Ga0209382_105554843	3300027909	Populus Rhizosphere	MLMLLNLMLQKVRDERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLQSQVNAAGS
Ga0247822_101787503	3300028592	Soil	NLMLQRVRDERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLQSHVNAAG
Ga0247824_102118073	3300028809	Soil	MLTMLSVLVQAFRDRRGVVSVEWIILGAVVMAAIVAAFAPTFGNALTTAVTTIGTTLQTQ
Ga0299906_1000254213	3300030606	Soil	MLTLMNRVLHSVRDERGVVSVEWIILGAVIMAAIVLAFAPTFNTALTQAVTDIGAQLSTQVNAAGS
Ga0268386_109016891	3300030619	Soil	MLMLLNLMLQRVARDERGVVSVEWIILAVVIMVAIVAAFAPTFQTMLTTAVTSIGTTLAAQTTAAGS
Ga0299913_105102113	3300031229	Soil	VNLMLQRVRDERGVVSVEWIILGAVIMAAIVLAFAPTFNTALTQAVTDIGNQLSTQVNAAGS
Ga0307408_1000250371	3300031548	Rhizosphere	MLMLLNLVLPMFQKVRNERGVVSVEWIILGAVIMAAIVLAFAPTFQTALTSAVTAISGQLQANVAAGGS
Ga0307408_1001583373	3300031548	Rhizosphere	MLMLLNLMLQRVRDERGVVSVEWIILGAVIMAAIVLAFAPTFTTQLTNAVTAIGAQLQTQVTAAGS
Ga0307468_1006007192	3300031740	Hardwood Forest Soil	MLMLLNLMLQRIRNERGVVSVEWIILGAVIMAAIVLAFAPTFQTALTTAVTAISNQLQANVATAGS
Ga0307473_107917361	3300031820	Hardwood Forest Soil	GTMLMLLNLMLQRIRNERGVVSVEWIILGAVIMAAIVLAFAPTFQTALTTAVTAISNQLQANVATAGS
Ga0307410_105118221	3300031852	Rhizosphere	MLMLLNLMLQRVRDERGVVSVEWIILGAVIMAAIVLAFAPTFTTQLTNAVTAIGAQLQTQ
Ga0307406_114743352	3300031901	Rhizosphere	MLMLLNLMLQRVRDERGVVSVEWIILGAVIMSAIVLAFAPTFTTQLTNAVTAIGAQLQTQVTAAGS
Ga0307416_1024374021	3300032002	Rhizosphere	MLMLLNLVLPMFQKVRNERGVVSVEWIILGAVIMAAIVLAFAPTFTTQLTNAVTAIGAQ
Ga0307411_115131131	3300032005	Rhizosphere	MLMLLNLMLQRVRDERGVVSVEWIILGAVIMAAIVLAFAPTFTTQLTNAVTAIGAQLQ
Ga0310906_100409074	3300032013	Soil	MLMLLNLMLQRVRDERGEVSVEWIILGAVIMAAIVLAFAPTFQGQLSAAVTAIGAQLQSQVSAAGS
Ga0310890_110309701	3300032075	Soil	MLQRVRDERGVVSVEWIILGAVIMAAIVLAFAPTFQGQLSAAVTAIGAQLQSQVSAAGS
Ga0310889_107049081	3300032179	Soil	MLMLLNLMLQRVRDERGVVSVEWIILGAVIMAAIVLAFAPTFQGQLSAAVTAIGAQLQSQVS
Ga0214472_100466702	3300033407	Soil	MLTLLNLMLHSVRDERGVVSVEWIILGAVIMAAIVLAFAPTFTTQLTAAVNAIGTQLQTQVGLAGS
Ga0247829_100728382	3300033550	Soil	MLLNLMLQRVRDERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLQSQVNAAGS
Ga0314785_009265_132_332	3300034479	Soil	MLMLLNLMLQRVRDERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLQSQVNAAGS
Ga0314792_155288_151_351	3300034667	Soil	MLILLNLMLQRVRGERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLQSQVNAAGS
Ga0314792_231115_366_530	3300034667	Soil	MLMLLNLMLQKVRDERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGT
Ga0314794_118085_227_427	3300034669	Soil	MLMLLNLMLQRVRDERGVVSVEWIILGAVVMAAIVLAFAPTFQGALTTAVTAIGTQLLSQVNAAGS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096235

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences