Metagenome / Metatranscriptome Family F096234

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096234
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	86 residues
Representative Sequence	MRRSLGLAAMALTFALGQGIVAAPRAATGAEQASEVIAGTVTKIDLDRSRVTVRSSDGEPHEFEASAETLKDLKVGDRIEAKRRPEKN
Number of Associated Samples	71
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.79 %
% of genes near scaffold ends (potentially truncated)	21.90 %
% of genes from short scaffolds (< 2000 bps)	80.95 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.571 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment (27.619 % of family members)
Environment Ontology (ENVO)	Unclassified (38.095 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (39.048 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 5.17% β-sheet: 24.14% Coil/Unstructured: 70.69%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13488	Gly-zipper_Omp	20.00
PF05532	CsbD	17.14
PF13441	Gly-zipper_YMGG	15.24
PF00196	GerE	2.86
PF05239	PRC	2.86
PF00072	Response_reg	1.90
PF01435	Peptidase_M48	1.90
PF04972	BON	1.90
PF00691	OmpA	1.90
PF00561	Abhydrolase_1	0.95
PF01391	Collagen	0.95
PF12974	Phosphonate-bd	0.95
PF00512	HisKA	0.95
PF07589	PEP-CTERM	0.95
PF13810	DUF4185	0.95
PF02777	Sod_Fe_C	0.95
PF04226	Transgly_assoc	0.95
PF04879	Molybdop_Fe4S4	0.95
PF04228	Zn_peptidase	0.95
PF04055	Radical_SAM	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	17.14
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	0.95
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.95
COG2321	Predicted metalloprotease	General function prediction only [R]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.57 %
Unclassified	root	N/A	31.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.57 %
Unclassified	root	N/A	31.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.57 %
Unclassified	root	N/A	31.43 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	45.71 %
Unclassified	root	N/A	31.43 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	18.10 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.86 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.90 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	10.48 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.90 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
Thiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae	6.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.90 %
Methylophilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	0.95 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
Thiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	6.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.90 %
Methylotenera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera	0.95 %
Synechococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
Thiobacillus denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	6.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.90 %
unclassified Synechococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → unclassified Synechococcaceae	0.95 %
unclassified Methylotenera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.43 %
Thiobacillus denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	6.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.90 %
Methylotenera sp. L2L1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp. L2L1	0.95 %
Synechococcaceae cyanobacterium SM1_2_3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → unclassified Synechococcaceae → Synechococcaceae cyanobacterium SM1_2_3	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17152758	All Organisms → cellular organisms → Bacteria	7888	Open in IMG/M
3300000550\|F24TB_12746241	Not Available	623	Open in IMG/M
3300000956\|JGI10216J12902_110636566	All Organisms → cellular organisms → Bacteria → Proteobacteria	2063	Open in IMG/M
3300001431\|F14TB_102446503	Not Available	882	Open in IMG/M
3300004114\|Ga0062593_101908303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	656	Open in IMG/M
3300004156\|Ga0062589_101981267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	590	Open in IMG/M
3300004156\|Ga0062589_102212527	Not Available	563	Open in IMG/M
3300004157\|Ga0062590_102285846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	568	Open in IMG/M
3300004480\|Ga0062592_101491225	Not Available	648	Open in IMG/M
3300004643\|Ga0062591_100918127	Not Available	823	Open in IMG/M
3300005546\|Ga0070696_100573302	All Organisms → cellular organisms → Bacteria → Proteobacteria	907	Open in IMG/M
3300006844\|Ga0075428_100102854	All Organisms → cellular organisms → Bacteria → Proteobacteria	3115	Open in IMG/M
3300006845\|Ga0075421_102019438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	614	Open in IMG/M
3300006846\|Ga0075430_100311955	All Organisms → cellular organisms → Bacteria → Proteobacteria	1301	Open in IMG/M
3300006847\|Ga0075431_101617195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	605	Open in IMG/M
3300006852\|Ga0075433_11106383	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300007004\|Ga0079218_10794667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	908	Open in IMG/M
3300009078\|Ga0105106_10064243	All Organisms → cellular organisms → Bacteria → Proteobacteria	2705	Open in IMG/M
3300009078\|Ga0105106_10201666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1451	Open in IMG/M
3300009078\|Ga0105106_11340327	Not Available	508	Open in IMG/M
3300009087\|Ga0105107_10030158	All Organisms → cellular organisms → Bacteria → Proteobacteria	3845	Open in IMG/M
3300009100\|Ga0075418_12349040	Not Available	582	Open in IMG/M
3300009147\|Ga0114129_12642907	Not Available	599	Open in IMG/M
3300009153\|Ga0105094_10696884	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300009162\|Ga0075423_12114954	Not Available	611	Open in IMG/M
3300009162\|Ga0075423_12453446	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300009166\|Ga0105100_11022347	Not Available	519	Open in IMG/M
3300009176\|Ga0105242_12596135	Not Available	556	Open in IMG/M
3300010399\|Ga0134127_11282179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → unclassified Synechococcaceae → Synechococcaceae cyanobacterium SM1_2_3	801	Open in IMG/M
3300011412\|Ga0137424_1041025	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300011438\|Ga0137451_1054803	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300012685\|Ga0137397_10131614	All Organisms → cellular organisms → Bacteria	1847	Open in IMG/M
3300012912\|Ga0157306_10262532	Not Available	615	Open in IMG/M
3300012931\|Ga0153915_10023363	All Organisms → cellular organisms → Bacteria → Proteobacteria	6125	Open in IMG/M
3300014865\|Ga0180078_1053070	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
3300014884\|Ga0180104_1101828	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300014885\|Ga0180063_1019109	All Organisms → cellular organisms → Bacteria → Proteobacteria	1865	Open in IMG/M
3300014885\|Ga0180063_1025276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1639	Open in IMG/M
3300015371\|Ga0132258_10158513	All Organisms → cellular organisms → Bacteria	5437	Open in IMG/M
3300018053\|Ga0184626_10170269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	925	Open in IMG/M
3300018059\|Ga0184615_10335453	Not Available	839	Open in IMG/M
3300018063\|Ga0184637_10002755	All Organisms → cellular organisms → Bacteria → Proteobacteria	11189	Open in IMG/M
3300018078\|Ga0184612_10348102	Not Available	752	Open in IMG/M
3300018084\|Ga0184629_10047851	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1937	Open in IMG/M
3300018084\|Ga0184629_10264579	All Organisms → cellular organisms → Bacteria → Proteobacteria	901	Open in IMG/M
3300019208\|Ga0180110_1085294	Not Available	552	Open in IMG/M
3300019229\|Ga0180116_1138997	Not Available	551	Open in IMG/M
3300019229\|Ga0180116_1175354	All Organisms → cellular organisms → Bacteria → Proteobacteria	830	Open in IMG/M
3300019229\|Ga0180116_1205199	Not Available	608	Open in IMG/M
3300019232\|Ga0180114_1232420	All Organisms → cellular organisms → Bacteria → Proteobacteria	643	Open in IMG/M
3300019238\|Ga0180112_1029745	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300019238\|Ga0180112_1149353	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300019249\|Ga0184648_1028210	Not Available	866	Open in IMG/M
3300019257\|Ga0180115_1228553	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300019257\|Ga0180115_1442570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp. L2L1	843	Open in IMG/M
3300020063\|Ga0180118_1053576	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	706	Open in IMG/M
3300020063\|Ga0180118_1139655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	795	Open in IMG/M
3300020065\|Ga0180113_1195283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1017	Open in IMG/M
3300020065\|Ga0180113_1328061	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300020066\|Ga0180108_1076476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	547	Open in IMG/M
3300020066\|Ga0180108_1138740	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300020067\|Ga0180109_1007803	Not Available	565	Open in IMG/M
3300020067\|Ga0180109_1064727	All Organisms → cellular organisms → Bacteria → Proteobacteria	1136	Open in IMG/M
3300020067\|Ga0180109_1284321	All Organisms → cellular organisms → Bacteria → Proteobacteria	1192	Open in IMG/M
3300020067\|Ga0180109_1349160	Not Available	856	Open in IMG/M
3300020067\|Ga0180109_1402746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	591	Open in IMG/M
3300020067\|Ga0180109_1460895	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300020067\|Ga0180109_1489205	Not Available	597	Open in IMG/M
3300021081\|Ga0210379_10048860	All Organisms → cellular organisms → Bacteria → Proteobacteria	1680	Open in IMG/M
3300021081\|Ga0210379_10193513	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300021081\|Ga0210379_10283388	Not Available	723	Open in IMG/M
3300021090\|Ga0210377_10716598	Not Available	549	Open in IMG/M
3300027818\|Ga0209706_10040395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	2358	Open in IMG/M
3300027909\|Ga0209382_10063253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4382	Open in IMG/M
3300027979\|Ga0209705_10396738	Not Available	687	Open in IMG/M
3300027979\|Ga0209705_10607271	Not Available	522	Open in IMG/M
3300028380\|Ga0268265_10524912	Not Available	1120	Open in IMG/M
3300030606\|Ga0299906_10029884	All Organisms → cellular organisms → Bacteria → Proteobacteria	4358	Open in IMG/M
3300030606\|Ga0299906_10186164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1642	Open in IMG/M
3300030606\|Ga0299906_10194246	All Organisms → cellular organisms → Bacteria	1603	Open in IMG/M
3300030606\|Ga0299906_10569830	Not Available	861	Open in IMG/M
3300030606\|Ga0299906_10620946	All Organisms → cellular organisms → Bacteria → Proteobacteria	817	Open in IMG/M
3300030619\|Ga0268386_10100988	All Organisms → cellular organisms → Bacteria	2232	Open in IMG/M
3300030619\|Ga0268386_10109812	All Organisms → cellular organisms → Bacteria → Proteobacteria	2128	Open in IMG/M
3300030619\|Ga0268386_10894450	Not Available	557	Open in IMG/M
3300030620\|Ga0302046_10002989	All Organisms → cellular organisms → Bacteria → Proteobacteria	15494	Open in IMG/M
3300030620\|Ga0302046_10088609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	2519	Open in IMG/M
3300030620\|Ga0302046_10690736	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300030620\|Ga0302046_10836569	Not Available	739	Open in IMG/M
3300030620\|Ga0302046_10863067	Not Available	726	Open in IMG/M
3300031563\|Ga0307436_1073253	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300031576\|Ga0247727_10613312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	815	Open in IMG/M
3300031585\|Ga0315534_1021047	All Organisms → cellular organisms → Bacteria → Proteobacteria	3152	Open in IMG/M
3300031720\|Ga0307469_11245088	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300031820\|Ga0307473_10737481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	696	Open in IMG/M
3300031965\|Ga0326597_10458935	All Organisms → cellular organisms → Bacteria	1399	Open in IMG/M
3300033407\|Ga0214472_11621141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	550	Open in IMG/M
3300033480\|Ga0316620_10143055	All Organisms → cellular organisms → Bacteria	1904	Open in IMG/M
3300033513\|Ga0316628_100078338	All Organisms → cellular organisms → Bacteria → Proteobacteria	3597	Open in IMG/M
3300033513\|Ga0316628_100087256	All Organisms → cellular organisms → Bacteria → Proteobacteria	3440	Open in IMG/M
3300033814\|Ga0364930_0055529	All Organisms → cellular organisms → Bacteria → Proteobacteria	1346	Open in IMG/M
3300034115\|Ga0364945_0087661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	902	Open in IMG/M
3300034176\|Ga0364931_0290415	Not Available	541	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.62%
Host-Associated	Host-Associated	12.38%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	50.48%
Terrestrial	Environmental → Terrestrial	37.14%
Plants	Host-Associated → Plants	12.38%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	37.14%
Soil	Environmental → Terrestrial → Soil	33.33%
Sediment	Environmental → Aquatic → Sediment	11.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.48%
Floodplain	Environmental → Terrestrial → Floodplain	2.86%
Marine	Environmental → Aquatic → Marine	1.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.90%
Cave	Environmental → Terrestrial → Cave	0.95%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Sediment	36.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.86%
Loam	Environmental → Terrestrial → Soil → Loam	2.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.86%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.95%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	36.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.86%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.86%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.95%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.95%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	27.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.29%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.52%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	8.57%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.71%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.95%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.95%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.95%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014865	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT499_16_10D	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300019208	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT231_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019228	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019229	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019232	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT530_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019238	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019257	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020066	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT45_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300027818	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031563	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-40	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031585	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-40	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00447500	2088090014	Soil	MRNLGFAAIALAFALAQGIXXXXXXAAEQASEVIAGEVTKIDLQHSRVTVRSSDGQPHEFEASAEMLKTLKVGDQIEAKRRPDKN
F24TB_127462412	3300000550	Soil	MTKSPGLAAMALMVALGQGIVAAPRAATAVEQASEVIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAETLRDLKVGDRIEAKRRSEKN*
JGI10216J12902_1106365662	3300000956	Soil	MRRNLGLAALGLAAALGWGVAPPRATLAAENASSEVIAGVVTAIDHDRRLVTVQSSDGQIHQFEAPPETLKDLKVGDRLEAKRRPEKN*
F14TB_1024465031	3300001431	Soil	MKRILGLAALALAVAVGQGVPRAATAAEQTSEVIAGEVTKIDLDRSRVTVRSSDGTAHEFEASAETLKDLKV
Ga0062593_1019083032	3300004114	Soil	MRKIPGLAAIALTVALGLGIVAAPRAATAAEQTSEVIAGEVTKIDLDRSRVTVRSSDGQPHEFTASAETLKNLKVGDRIEAKRRPDQN*
Ga0062589_1019812672	3300004156	Soil	MRRSPGLAVMALIVALGQSIVATRVATATEQASEIVAGEVTKIDLDRSRVTVRSGDGKPHEFEASAETLKDLKVGDKIEAKRRPDKN*
Ga0062589_1022125272	3300004156	Soil	MRNHGFAAMALALALGQGIVASPRAATATDQGTEVIAGEVTKIDRDRSRVTVRSSDGKPHEFEASAETLKDLKVGDRIEAKRRPEK*
Ga0062590_1022858462	3300004157	Soil	MRNLGFAVMAFAFALGQGIVASPRAATAAEQASEVIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAEMLKALKVGDRIEAKRRPEK*
Ga0062592_1014912252	3300004480	Soil	AAIALTVALGQGIVAAPRAATAAEQASEVIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAEMLKALKVGDRIEAKRRPEK*
Ga0062591_1009181271	3300004643	Soil	GLSAALGLGVVTQPRAAASAEQASSEVIAGVVTAIDQERRLVTVQSSDGRTHQFQAPPETLKDLKVGDRLEAKRRPEKN*
Ga0070696_1005733024	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LTVALGLGTFAAPRAATAEEQASEVIAGEVTKIDLDRNRVTVRSSDGKPHEFEASAETLKDLKVGDQLEAKRRPEKN*
Ga0075428_1001028546	3300006844	Populus Rhizosphere	MRKVLDLAAIALTVALGQGIVAAPRAATAAEQASEVIAGEVTKIDLDRRRVTVRSSDGSPHEFEAPAETLKDLKVGDRIEAKRRPEKN*
Ga0075421_1020194381	3300006845	Populus Rhizosphere	MRKISGLAAIALTVALGLGIVAAPRAATAAEQTSEVIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAETLKDLKVGDQLEAKRRPENN*
Ga0075430_1003119552	3300006846	Populus Rhizosphere	MGRSAFLAGLAFAVALGQGSVLVPRAATAAEEKAPETIAGVVTKIDRERSRVTVRSSDQEIHEFEASAETLAALKVGDRIEMKRRPEPGGIGPSEP*
Ga0075431_1016171951	3300006847	Populus Rhizosphere	MGRSAFLAGLAFAVALGQGSVLVPRAATAAEEKAPETIAGVVTKIDRERSRVTVRSSDQEIHEFEASAETLAALKVGDRIEMKRRPEPGGLGPSEP*
Ga0075433_111063831	3300006852	Populus Rhizosphere	AIALGQSIVAAPRAATAAEQASEVIAGEVTKIDLDRSRVTVRTSDGKPHEFEASAETLKDLKVGDRLEAKRRPEKN*
Ga0079218_107946672	3300007004	Agricultural Soil	MTRTSGLAVFALTVAVVQGMVAVPHEAAAAEQASEVIAGEVTKIDRDRRRVTVRSSEGTPHEFEAPDETLKDLKVGDRIEAKRRPEKN*
Ga0105106_100642434	3300009078	Freshwater Sediment	MKVNSVLAEMALLVALGLGVVVAQAGAQATEPQALEVIDGEVTRIDLERRRVTVRSSDGGVHEFEASVETLEDLKVGDRIEAKRRPMTPATD*
Ga0105106_102016665	3300009078	Freshwater Sediment	MKKSLGIAAVVLGIALGQGIVAAPRAATAAEQAAEVIAGQVTKIDHERSRVTLRSSDGEFHEFEASAETLKDLKVGDRIEAKRRPGS*
Ga0105106_113403271	3300009078	Freshwater Sediment	MGRRIRLAALALAIALGQGIVAAPRAVTAEEQSSEVVAGVVTEIDHERSRVTVRGSDGVIYEDEASPETLKDLKVGDRIEAKRRPATN*
Ga0105107_100301582	3300009087	Freshwater Sediment	MKVNSVLAEMALLVALGLGVVVAQAGAQATEPQALEVIDGEVTRIDLERRRVTVRSSDGGVHEFEASVETLEDLKVGDRIEAKRRPMAPATD*
Ga0075418_123490402	3300009100	Populus Rhizosphere	MRKIPGLAAIALTVALGLGIFAAPRAATAAEQATEIIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAETLKGLKVGDQLEAKRRPEKN*
Ga0114129_126429071	3300009147	Populus Rhizosphere	MRKIPGLAAIALTVALGLGIFAAPRAATAAEQAPEVIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAETLKNLKVGDQLEAKRRPEKN*
Ga0105094_106968841	3300009153	Freshwater Sediment	MKWNSSLAAMTLAAALALGLGVGVAQAQAAEPEALEVVDGEVTRIDLERRRVTVRGRDGGLHEFEASVETLKDLKVGDRIEAKRRPMAPATD*
Ga0075423_121149542	3300009162	Populus Rhizosphere	MRNLGFAVIALAIALGQSIVAAPRAATAAEQASEVIAGEVTKIDLDRSRVTVRTSDGKPHEFEASAETLKDLKVGDRLEAKRRPEKN*
Ga0075423_124534463	3300009162	Populus Rhizosphere	TVALGQGIVAAPRAATAAEQASEVVAGEVTKIDLDRSRVTVRSSDGKPHEFEASAETLKDLKVGDRIEAKRRPE*
Ga0105100_110223472	3300009166	Freshwater Sediment	MKTRLGLVAMALTVALGQAVTFAPAGSATAAEEASDVVKGEVTKIDSERSRVTIRSSDGSVYEFEASAETLRDLKLGDRIEAR
Ga0105242_125961351	3300009176	Miscanthus Rhizosphere	MRNLGFAAMALAFTLGQGIVAAPRASTAEEQASEVIAGEVTKIDLDRSRVAVCSSDGDLLEVEASAETLKDLKVGDRIEMKRRPD*
Ga0134127_112821793	3300010399	Terrestrial Soil	MRRSPGLAAIALTVALGLGTFAAPRAATAEEQASEVIAGEVTKIDLDRNRVTVRSSDGKPHEFEASAETLKDLKVGDQLEAKRRPEKN*
Ga0137424_10410252	3300011412	Soil	MALTVALGLGIFAAPRAATAAEEASEVIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAETLKDLKVGDRIEAKRRPENN*
Ga0137451_10548033	3300011438	Soil	MALTFAFGPGIVAAPRAATAAEQASEIIDGVVTKIDLERHRVTVRSSDLETHEFEASDETLKDLKVGDRIEAKRRPEKN*
Ga0137397_101316142	3300012685	Vadose Zone Soil	MRKSFSLAALALAVTLGQGIVAAPRAATAAEQASEVIAGTVTKIDLDRSRVTVRSSDGEPHEFEASAETLKNLKVGDRIEAKRRPDQN*
Ga0157306_102625322	3300012912	Soil	MALALALGQGIVASPRAATAAEQASEVIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAEMLKALKVGDRIEAKRRPEK*
Ga0153915_100233635	3300012931	Freshwater Wetlands	MALTVALGGGIVAAPRTATAAEEASEIIAGVVTKIDHERSRVTVQSSDGKSREFEVSAETLKRLKVGDRLEAKRRPATNGGGQGTRPSSTTSERV*
Ga0180078_10530701	3300014865	Soil	MKRNLTLAALAMTAALGLGLVTAPHAATAAEEAYEVVAGQVTNIDPTRHRVTVRSSDGQTHEFEASDETLKDLKVGDRIE
Ga0180104_11018282	3300014884	Soil	MALTVALGLGMFAAPRAATAAEQASEVIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAETLKDLTVGDQLEAKRRPEKN*
Ga0180063_10191093	3300014885	Soil	MALTFAFGQGIVAAPRAATAAEQASEIIDGVVTKIDLERHRVTVRSSDLQIHEFEASDETLKDLKVGDRIQAKRRPEQN*
Ga0180063_10252762	3300014885	Soil	MRRSPGLAAMALTVALGLGMFAAPRAATAAEQASEVIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAETLKDLKVGDQIEAKRRPEKN*
Ga0132258_101585138	3300015371	Arabidopsis Rhizosphere	MALAVALGQGIVAAPRAATAAEPASEVIAGEVTKIDLDRRRVTVRSSDGKPHEFEAPAETLKGLKVGDRLEAKRRPEKN*
Ga0184626_101702691	3300018053	Groundwater Sediment	VLPAPTRVAAAAEQASETVAGEVTKIDLDRSRVTIRSKDGSVHEFEASAETLKDLKVGDYIEAKRRAAND
Ga0184615_103354531	3300018059	Groundwater Sediment	MRKSFVLAAMALTFAFGPSIVAAPRAAIAAEQASEVIEGVVTKIDLERHRVTVRSSDLETHEFEASDETLKDLKVGDRIEAKRRPEKN
Ga0184637_100027555	3300018063	Groundwater Sediment	MRKCLVLAAMALTFAFGQSIVAAPRAATAAEQASEIIDGLVTKIDLERHRVTVRSSDLQIHEFEASDETLKELKVGDRIEAKRRPETN
Ga0184612_103481023	3300018078	Groundwater Sediment	MRRSLGLALALTVALGQGIVAAPRAATAAEQASEIVAGLVTKIDHDRSRVTVRSSDGELHEFEASAETLKDLKVGDRIEATRRRATN
Ga0184629_100478515	3300018084	Groundwater Sediment	MRPSTKSTGVGALTVALGQGIVALPQAATAAEQDSEVVAGRVTKIDHDRSSVTVQGSDGHSHESDASAETLQDLTVGNRIEAKRRPTTD
Ga0184629_102645792	3300018084	Groundwater Sediment	MRRSFVLAAMALTVAFGPGIVAAPRAATAAEQTSEVVDGVVTKIDLDSHRVTVRSSDQELHEFEASAETLKELRVGDRIEAKRRPETN
Ga0180110_10852942	3300019208	Groundwater Sediment	MRMNPVLAAMALTVALGLGVGVGPAQAAEPQDLEVVDGEVTRIDLERRRVTVRSSDGAVHEFEASVETLKDLKVGDRIEAKRRPMTPATD
Ga0180119_13044962	3300019228	Groundwater Sediment	MRMNPVLAAMALTVAVAQPNAAAPPAATATDHASEIVAGLVTKVDLGSGRLTVQSSDGRLHEFEASAETLMDLKVGDRIEAKRRTEPR
Ga0180116_11389972	3300019229	Groundwater Sediment	MTRSRGLAAMALTVALGLGIFAAPRAAMAAEQASEVIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAETLKDLKVGDQIEAKRRP
Ga0180116_11753541	3300019229	Groundwater Sediment	MKRNLTLAALAMTAALGLGLVTAPHAATAAEEAYEVVAGQVTNIDPTRHRVTVRSSDGQTHEFEASDETLKDLKVGDRIEAKRRPAPD
Ga0180116_12051991	3300019229	Groundwater Sediment	KNLGLAGLALALALGQGIVAAPQTATAAEQSAEIVAGRVTKIDLDRSRVTLRSSDGELHEFEASAETLKDLSVGDRIEAKRRPTTN
Ga0180114_12324203	3300019232	Groundwater Sediment	AMTAALGLGLVTAPHAATAAEEAYEVVAGQVTNIDPTRHRVTVRSSDGQTHEFEASDETLKDLKVGDRIEAKRRPAPD
Ga0180112_10297453	3300019238	Groundwater Sediment	MRKIPGLAAIALTVALGPGIFAAPRAATAAEQTSEVIAGEVTKIDLDRSRVTVRSSDGKAHEFEASAETLKDLTVGDRIEAKRRPPQD
Ga0180112_11493531	3300019238	Groundwater Sediment	KGKRTRMRKIPGLAAIALTVALGLGTFAAPWVAAAEQTSEVIAGEVTKIDLDRSRVTVRSSDGKSHEFEASAETLKDLKVGDQLEATRRSETD
Ga0184648_10282101	3300019249	Groundwater Sediment	MRRSLGLALALTVALGQGIVAAPRAATAAEQASEIVAGLVTKIDHDRSRVTVRSSDGELHEFEASAETLKDLSVGDRIEAKRRPTTN
Ga0180115_12285534	3300019257	Groundwater Sediment	MKQTLVLAAALALTAALGPGLVMSPRAALAGESAAEVVAGQVTNIDPGRSRVTVRSSDGQPHEFEASAETLKTLKVGDRIEAKRRPAPEKE
Ga0180115_14425701	3300019257	Groundwater Sediment	MRRSPGLAALALTVALGLGIVAAPRATTAAEQASEIIDGVVTEIDHDRSRVTVRSGDGKPHEFEASAETLKDLKVGDRIEAKRRPEQN
Ga0180118_10535761	3300020063	Groundwater Sediment	MRRSLGLAAMVLTVALGQGIVAAPRAATAAEEASEIVAGEVTKVDHERNRVTVRSSDGQLHEFEASAETLKDLKVGDRLEAKRRPATR
Ga0180118_11396552	3300020063	Groundwater Sediment	MNKTSLLLAAMALAVTLGHGVSSAPARAATADQALEVVDGEVTKLDLERGRVTVRSRDGGVHEFEASAETLKSLKLGDRIEAKRRPATPATSATD
Ga0180113_11952832	3300020065	Groundwater Sediment	MSRSFSLAAVLAIALGQGIVAAPWAATAAEQSSEVIAGLVTKIDHERSRVTVRSSDGESHEFEASTETLKDLKVGDRIEATRRPAPN
Ga0180113_13280611	3300020065	Groundwater Sediment	MRKIPGLAAIALTVALGLGIFAAPRSTTAAEQTSEVIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAETLKDLKVGDQIEAKRRPE
Ga0180108_10764763	3300020066	Groundwater Sediment	GIVAAPWAATAAEQSSEVIAGLVTKIDHERSRVTVRSSDGESHEFEASTETLKDLKVGDRIEATRRPAPN
Ga0180108_11284751	3300020066	Groundwater Sediment	MRRCLVLAAMALTVAVAQPNAAAPPAATATDHASEIVAGLVTKVDLGSNRLTVQSSDGRLHEFEASAETLMDLKVGDRIEAKRRKEPR
Ga0180108_11387402	3300020066	Groundwater Sediment	MRRSLSLAVALTVAIGQGIVGAPRAATAAEQASEIVAGLVTKIDHDRSRVTVRSSDGELHEFEASAETLKDLSVGDRIEAKRRPTTN
Ga0180109_10078032	3300020067	Groundwater Sediment	MRMNPVLAAMALTVALGLGVGVGPAQAAEPQALEVIDGEVTRIDLERRRVTVRSSDGGVHEFEASVETLKDLKVGDRIEAKRRPMTPATD
Ga0180109_10647272	3300020067	Groundwater Sediment	MKKHFGFAAMALSVALGQGIVAAPRVATAAEQASEAVTGMVTRIDLERNRVTVRGSDGKTYEFEASEETLKDLQVGDHIEAKRRPATN
Ga0180109_12843213	3300020067	Groundwater Sediment	MRKRSVGLAAMALAMALGQGIVAAPRVATAAEQASQAVTGMVTKVDLERSRVTVRGSDGKTYEFEASEETLKDLQVGDHIEAKPRPATN
Ga0180109_13491602	3300020067	Groundwater Sediment	MRKIPGFAAIALTVALALGIFAAPRAATAAEQDSEVIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAETLKDLKVGDRLEATRRSETD
Ga0180109_14027461	3300020067	Groundwater Sediment	MRRHLGLVAIGLTLALGLAISFAAPPAMATEHASDVIEGEVTKIDVDRSRVTIRGSDGSLHEFEASAETLKDLKVGDRIEAKRRPASE
Ga0180109_14608955	3300020067	Groundwater Sediment	GMVAAPRATAAEKDSEVIGGLVTKVDLERSRVTVRSSDGESHEFEASAETLKGLKVGDRIEAKRRPEQN
Ga0180109_14892052	3300020067	Groundwater Sediment	MFKAKRQFLLLTFLVTIALVIGAAPQAATAAEPGAEVIAGLVTAIDRDRNRVTVRSSDGELHEFEAAPETLKDLEVGDRLEVKRRPETN
Ga0210379_100488602	3300021081	Groundwater Sediment	MRKSLVLAAMALAFTFGPSIGGVATAAEPTSEVIDGQVTKIDLERHLVTVRSSDLQIHEFEASDETLKDLKVGDRIEAKRRPDPDHQ
Ga0210379_101935132	3300021081	Groundwater Sediment	MRRSLGLAMALTVAIGQGIVAAPRAATAAEQASEIVAGLVTKIDHDRSRVTVRSSDGELHEFEASAETLKDLNVGDRIEAKRRPTTN
Ga0210379_102833882	3300021081	Groundwater Sediment	MKKRLGLAGMALAVALGQGIIAAPWAATAADEEVVAGRVTEIDHDRSRVTVRSSDGKTHEFEASAATLKDLTAGDRIEAKRRPPPD
Ga0210377_107165981	3300021090	Groundwater Sediment	MRTGLSLVAMALTVALGQAITYAPARSATAAEQASEVVEGEVTKIDLDQSRVMIRSSDGTVYEFEASAETLKDLKVGDHIEAKRRPANG
Ga0209706_100403955	3300027818	Freshwater Sediment	MKKSLGIAAVVLGIALGQGIVAAPRAATAAEQAAEVIAGQVTKIDHERSRVTLRSSDGEFHEFEASAETLKDLKVGDRIEAKRRPGS
Ga0209382_100632537	3300027909	Populus Rhizosphere	MRKVLDLAAIALTVALGQGIVAAPRAATAAEQASEVIAGEVTKIDLDRRRVTVRSSDGSPHEFEAPAETLKDLKVGDRIEAKRRPEKN
Ga0209705_103967382	3300027979	Freshwater Sediment	MKKSPGIAAVVLGIALGQGIVAAPRAATAAEQAAEVIAGQVTKIDHERSRVTLRSSDGEFHEFEASAETLKDLKVGDRIEAKRRPGS
Ga0209705_106072712	3300027979	Freshwater Sediment	MGRRIRLAALALAIALGQGIVAAPRAVTAEEQSSEVVAGVVTEIDHERSRVTVRGSDGVIYEFEASPETLKDLKVGDRIEAKRRPATN
Ga0268265_105249123	3300028380	Switchgrass Rhizosphere	LKTRGVMRRSPGLAVMALIVALGQSIVATRVATATEQASEIVAGEVTKIDLDRSRVTVRSGDGKPHEFEASAETLKDLKVGDKIEAKRRPDKN
Ga0299906_100298841	3300030606	Soil	MRKSLALAALALTVAVGQGIFAAPRVATDAEQASEIIDGVVTEIDHERSRVTVRSSDGKPHEFEASAETLKDLKVGHRIEAKRR
Ga0299906_101861644	3300030606	Soil	MRRSFGIAVLALTIALGQGIVAAPWAATAAEQTSEVIAGLVTKIDHERSRVTVRSSDGESHEFEASAETLKDLKVGDRIEATRRPETN
Ga0299906_101942463	3300030606	Soil	MRRILGLAAMALTVALGQGISPPKAATAAEQASEVIAGVVTKVDHQWSRVTLRSSDGRFHEFRASAETLKDLEVGDRIEATRRPGTN
Ga0299906_105698301	3300030606	Soil	SMRTSLLLAAMVLALTLGHGVSAAPAQAATADQAFEVVEGEVTKLDLERGRVTVRSRDGGVHEFEASAETLKSLKVGDRIEAKRRPTTPTTSAKD
Ga0299906_106209462	3300030606	Soil	MRRSLGLAAMVLTVALAQGIVAAPRAATAAEEAFEIVAGEVTKVDPDRSRVTVRSSDGQLHEFEASAETLKDLKVGDRIEAKRRPVAR
Ga0268386_101009884	3300030619	Soil	MRKIPGLAAIALTVALGLDIVAAPRAVTAAEEATEIIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAETLKDLKVGDQLEAKRRPEKN
Ga0268386_101098123	3300030619	Soil	MRTSLLLAAMVLALTLGHGVSAAPAQAATADQAFEVVEGEVTKLDLERGRVTVRSRDGGVHEFEASAETLKSLKVGDRIEAKRRPTTPTTSATD
Ga0268386_108944501	3300030619	Soil	MRKSSGLAALALTVALGQGMFAAAPRTATAADEASEIIAGVVTEIDQGRSRVTVRSSDGQPHEFEASAETLKELKVGDRIEAKRRPEKN
Ga0302046_100029898	3300030620	Soil	MKRSVGLAALALAMALGQGMVAAPRVATAAEHVPEAVSGQVVKIDLERGRVTMRGSDGKSYEFEASDETLKDMQVGDHIEAKRRPATN
Ga0302046_100886092	3300030620	Soil	MRTRLGLVAMALTVALGQTITFAPVRSATAAERGSEVVEGEVTKIDLDRSRVTMRSRDGTAHEFEASAETLKDLKVGDRIEAKRRPENQ
Ga0302046_106907363	3300030620	Soil	MRQSLALAALALTVALGQGIFAAPRAATEAEQASEIIDGVVTEVDHDRSRVTVRSSDGKPHEFEASAETLKDLKVGDRIEAKRRPETN
Ga0302046_108365693	3300030620	Soil	MRRSLALAALALTVAVGQGIFAAPRVATDAEQASEIIDGVVTEIDHERSRVTVRSSDGKPHEFEASAETLKDLKVGHR
Ga0302046_108630671	3300030620	Soil	AIGLTLALGLASSFAAPPATATEHASEVIEGEVTKIDVERSRVTIRGSDGGLHEFEASAETLRDLKLGDRIEAKRRPAD
Ga0307436_10732532	3300031563	Salt Marsh	VALALAVALGQGILVPPRAAIAAGQDTESIEGVVTKIELDRGRVTVRSSDGKPHEFEASAETLKDLKVGDRIEAKRRPKTN
Ga0247727_106133123	3300031576	Biofilm	VRSRAWRSQPIVAAPQAATAAEQAAEIVAGRVTKIDHDRSRVTVESSDGQPHEFEASAETLKDLKVGDRIEAKRRPPAN
Ga0315534_10210472	3300031585	Salt Marsh Sediment	MKRHIGLAVMALTLALGPGMVATPRPAMAAEQASETVAGKVTMIDLDHRRVTVRNSDGTTYEFAASVETLKDLKVGDSIEARRRPANANEETN
Ga0307469_112450883	3300031720	Hardwood Forest Soil	MRRSLGLAAMALTFALGQGIVAAPRAATAAEQASGVIAGTVTKIDLDRSRVTVRSSDGEPHEFEASAETLKNLKVGDQIEAKRRPDKN
Ga0307473_107374812	3300031820	Hardwood Forest Soil	MRRSLGLAAMALTFALGQGIVAAPRAATGAEQASEVIAGTVTKIDLDRSRVTVRSSDGEPHEFEASAETLKDLKVGDRIEAKRRPEKN
Ga0326597_104589353	3300031965	Soil	MRRSIGLAAMALTLALGQGIVAAPRAATAAEQAPETIAGLVTAIDHARSRVTVRSSDGEFHEFEASAETLKDLKVGDRIEVKRRSATN
Ga0214472_116211411	3300033407	Soil	MRRRIGLAALALALALGQGIVAAPRAATATEQAPETIAGLVTAIDHERSRVTVRSSDGTSHEFEASAETLEDLKVGDRIEMKRRPATN
Ga0316620_101430552	3300033480	Soil	MRRRSLRLAAMALTVALGEGIVAAPRTATAAEEASEIIAGVVTKIDHERSRVTVQSSDGKSREFEVSAETLKRLKVGDRLEAKRRPATNGGGQGTRPSSTTSERV
Ga0316628_1000783383	3300033513	Soil	MRRRSLRLAAMALTVALGGGIVAAPRTATAAEEASEIIAGVVTKIDHERSRVTVQSSDGKSREFEVSAETLKRLKVGDRLEAKRRPATNGGGQGTRPSSTTSERV
Ga0316628_1000872566	3300033513	Soil	MSRSFRFAAIALAVALGQGLVTAPRAATAADQASEVVAGTVTKIDLDRSRVTVRSSDGKSHEFEASAETLKDLKVGDRIEATRRPTGN
Ga0364930_0055529_279_518	3300033814	Sediment	MALTVALGQGIVAAPQAATAAEQASEVIAGLVTKIDHDRSRVTVRSSDGEFHEFEASAETLKDLEVGDRIEVKRRQETN
Ga0364945_0087661_1_264	3300034115	Sediment	MRRSLGLALALTVALGQGIVAAPRAATATEQASEIVAGLVTKIDHDRSRVTVRSSDGELHEFEASAETLKDLSVGDRIEAKRRPTTN
Ga0364931_0290415_20_286	3300034176	Sediment	MRRSPGLAAMALTVALGLGMFAAPRAATAAEQASEVIAGEVTKIDLDRSRVTVRSSDGKPHEFEASAETLKDLKVGDQIEAKRRPEKN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096234

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences