Metagenome / Metatranscriptome Family F096233

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F096233
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	113 residues
Representative Sequence	MKVFANSKSIFSLAAVLALSISVLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRYYAYDRYDRFGRWR
Number of Associated Samples	85
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.95 %
% of genes near scaffold ends (potentially truncated)	36.19 %
% of genes from short scaffolds (< 2000 bps)	75.24 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (15.238 % of family members)
Environment Ontology (ENVO)	Unclassified (23.810 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.905 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13468	Glyoxalase_3	14.29
PF00596	Aldolase_II	12.38
PF07687	M20_dimer	9.52
PF00296	Bac_luciferase	6.67
PF00528	BPD_transp_1	3.81
PF01977	UbiD	1.90
PF04909	Amidohydro_2	1.90
PF01546	Peptidase_M20	1.90

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	6.67
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	1.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	69.52 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	64.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	64.76 %
Maricaulales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales	0.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	64.76 %
Maricaulaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae	0.95 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	64.76 %
Woodsholea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Woodsholea	0.95 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	64.76 %
Roseomonas aerilata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas aerilata	0.95 %
Woodsholea maritima	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Woodsholea → Woodsholea maritima	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886006\|SwRhRL3b_contig_1237501	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	898	Open in IMG/M
2228664021\|ICCgaii200_c0969652	All Organisms → cellular organisms → Bacteria	1827	Open in IMG/M
2228664021\|ICCgaii200_c0969981	All Organisms → cellular organisms → Bacteria	1692	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0656922	All Organisms → cellular organisms → Bacteria	1693	Open in IMG/M
3300000550\|F24TB_11041215	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	677	Open in IMG/M
3300000881\|JGI10215J12807_1234985	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	721	Open in IMG/M
3300000890\|JGI11643J12802_11683443	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	567	Open in IMG/M
3300000891\|JGI10214J12806_11719027	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	535	Open in IMG/M
3300001431\|F14TB_102822020	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	506	Open in IMG/M
3300003992\|Ga0055470_10163040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas aerilata	592	Open in IMG/M
3300003997\|Ga0055466_10041665	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300004463\|Ga0063356_100708208	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300004463\|Ga0063356_102182773	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	842	Open in IMG/M
3300004463\|Ga0063356_103398693	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300004480\|Ga0062592_100216004	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300005186\|Ga0066676_10277807	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1102	Open in IMG/M
3300005294\|Ga0065705_10191816	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1492	Open in IMG/M
3300005295\|Ga0065707_10001671	All Organisms → cellular organisms → Bacteria → Proteobacteria	6869	Open in IMG/M
3300005446\|Ga0066686_11061332	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	523	Open in IMG/M
3300005446\|Ga0066686_11121272	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	505	Open in IMG/M
3300005471\|Ga0070698_101800729	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	565	Open in IMG/M
3300005553\|Ga0066695_10150755	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300005873\|Ga0075287_1000376	All Organisms → cellular organisms → Bacteria	5813	Open in IMG/M
3300005876\|Ga0075300_1008437	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300005884\|Ga0075291_1000361	All Organisms → cellular organisms → Bacteria	4617	Open in IMG/M
3300006049\|Ga0075417_10010123	All Organisms → cellular organisms → Bacteria	3466	Open in IMG/M
3300006049\|Ga0075417_10062415	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1634	Open in IMG/M
3300006049\|Ga0075417_10229079	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	886	Open in IMG/M
3300006844\|Ga0075428_100821827	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	987	Open in IMG/M
3300006845\|Ga0075421_100022065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8016	Open in IMG/M
3300006845\|Ga0075421_100804594	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1082	Open in IMG/M
3300006845\|Ga0075421_102666826	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	517	Open in IMG/M
3300006847\|Ga0075431_100110592	All Organisms → cellular organisms → Bacteria	2835	Open in IMG/M
3300006852\|Ga0075433_10020996	All Organisms → cellular organisms → Bacteria	5470	Open in IMG/M
3300006853\|Ga0075420_101581266	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	562	Open in IMG/M
3300006865\|Ga0073934_10112604	All Organisms → cellular organisms → Bacteria	2035	Open in IMG/M
3300006876\|Ga0079217_10006329	All Organisms → cellular organisms → Bacteria	3580	Open in IMG/M
3300006894\|Ga0079215_10011429	All Organisms → cellular organisms → Bacteria	2728	Open in IMG/M
3300006918\|Ga0079216_11587237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Woodsholea → Woodsholea maritima	552	Open in IMG/M
3300007004\|Ga0079218_11634746	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	709	Open in IMG/M
3300009012\|Ga0066710_100693099	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1552	Open in IMG/M
3300009012\|Ga0066710_101522390	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1031	Open in IMG/M
3300009087\|Ga0105107_10167668	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1543	Open in IMG/M
3300009100\|Ga0075418_10184004	All Organisms → cellular organisms → Bacteria	2224	Open in IMG/M
3300009137\|Ga0066709_104341443	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	517	Open in IMG/M
3300009147\|Ga0114129_10113051	All Organisms → cellular organisms → Bacteria	3744	Open in IMG/M
3300009147\|Ga0114129_10119922	All Organisms → cellular organisms → Bacteria	3622	Open in IMG/M
3300009157\|Ga0105092_10186209	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1158	Open in IMG/M
3300009162\|Ga0075423_12389958	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	576	Open in IMG/M
3300009810\|Ga0105088_1052345	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	692	Open in IMG/M
3300010336\|Ga0134071_10601722	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	575	Open in IMG/M
3300010399\|Ga0134127_10282399	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1590	Open in IMG/M
3300010399\|Ga0134127_10374746	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1398	Open in IMG/M
3300010399\|Ga0134127_12921640	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	557	Open in IMG/M
3300010403\|Ga0134123_11540563	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	710	Open in IMG/M
3300012204\|Ga0137374_10061176	All Organisms → cellular organisms → Bacteria	3779	Open in IMG/M
3300012204\|Ga0137374_10556700	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	881	Open in IMG/M
3300012349\|Ga0137387_10633706	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	774	Open in IMG/M
3300012355\|Ga0137369_10338327	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1103	Open in IMG/M
3300012355\|Ga0137369_10641245	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	735	Open in IMG/M
3300012360\|Ga0137375_10144716	All Organisms → cellular organisms → Bacteria	2333	Open in IMG/M
3300012360\|Ga0137375_10162525	All Organisms → cellular organisms → Bacteria	2165	Open in IMG/M
3300012929\|Ga0137404_10306088	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1380	Open in IMG/M
3300012929\|Ga0137404_12058023	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	533	Open in IMG/M
3300012930\|Ga0137407_10057761	All Organisms → cellular organisms → Bacteria	3180	Open in IMG/M
3300014263\|Ga0075324_1121691	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	579	Open in IMG/M
3300014311\|Ga0075322_1005990	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2228	Open in IMG/M
3300015264\|Ga0137403_10052690	All Organisms → cellular organisms → Bacteria → Proteobacteria	4189	Open in IMG/M
3300018028\|Ga0184608_10023958	All Organisms → cellular organisms → Bacteria → Proteobacteria	2243	Open in IMG/M
3300018054\|Ga0184621_10224365	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	672	Open in IMG/M
3300018056\|Ga0184623_10432436	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	573	Open in IMG/M
3300018061\|Ga0184619_10514324	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	527	Open in IMG/M
3300018071\|Ga0184618_10221770	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	795	Open in IMG/M
3300018076\|Ga0184609_10030647	All Organisms → cellular organisms → Bacteria	2208	Open in IMG/M
3300018422\|Ga0190265_10245059	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1835	Open in IMG/M
3300018422\|Ga0190265_13301167	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	538	Open in IMG/M
3300019255\|Ga0184643_1069951	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	612	Open in IMG/M
3300019377\|Ga0190264_12123032	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	520	Open in IMG/M
3300021080\|Ga0210382_10243595	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	786	Open in IMG/M
3300022534\|Ga0224452_1265272	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	525	Open in IMG/M
3300022694\|Ga0222623_10037409	All Organisms → cellular organisms → Bacteria	1858	Open in IMG/M
3300022756\|Ga0222622_10145159	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1524	Open in IMG/M
3300025310\|Ga0209172_10161100	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1218	Open in IMG/M
3300025567\|Ga0210076_1000140	All Organisms → cellular organisms → Bacteria	15621	Open in IMG/M
3300025791\|Ga0210115_1046365	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	932	Open in IMG/M
3300025792\|Ga0210143_1045332	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	777	Open in IMG/M
3300025796\|Ga0210113_1022592	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1292	Open in IMG/M
3300026066\|Ga0208290_1034165	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	564	Open in IMG/M
3300027395\|Ga0209996_1014239	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1079	Open in IMG/M
3300027424\|Ga0209984_1068098	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	530	Open in IMG/M
3300027543\|Ga0209999_1067225	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	685	Open in IMG/M
3300027552\|Ga0209982_1048233	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	685	Open in IMG/M
3300027639\|Ga0209387_1083710	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	758	Open in IMG/M
3300027682\|Ga0209971_1005219	All Organisms → cellular organisms → Bacteria	3085	Open in IMG/M
3300027691\|Ga0209485_1232439	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	587	Open in IMG/M
3300027691\|Ga0209485_1276252	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	548	Open in IMG/M
3300027717\|Ga0209998_10005010	All Organisms → cellular organisms → Bacteria	2784	Open in IMG/M
3300027873\|Ga0209814_10006431	All Organisms → cellular organisms → Bacteria	4521	Open in IMG/M
3300027873\|Ga0209814_10041988	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1903	Open in IMG/M
3300027876\|Ga0209974_10013468	All Organisms → cellular organisms → Bacteria	2724	Open in IMG/M
3300027886\|Ga0209486_10195437	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1142	Open in IMG/M
3300027886\|Ga0209486_10238010	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1047	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1129659	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	623	Open in IMG/M
3300031908\|Ga0310900_11580615	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	554	Open in IMG/M
3300033551\|Ga0247830_10636843	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	845	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.24%
Host-Associated	Host-Associated	24.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.24%
Plants	Host-Associated → Plants	24.76%
Aquatic	Environmental → Aquatic	20.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.24%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.52%
Sediment	Environmental → Aquatic → Sediment	8.57%
Marine	Environmental → Aquatic → Marine	5.71%
Freshwater	Environmental → Aquatic → Freshwater	3.81%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.24%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.57%
Wetlands	Environmental → Aquatic → Marine → Wetlands	5.71%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.71%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.81%
Loam	Environmental → Terrestrial → Soil → Loam	2.86%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.90%
Sand	Environmental → Terrestrial → Soil → Sand	1.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.24%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.38%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.57%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.71%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.81%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.95%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.24%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.52%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	9.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	8.57%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.71%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.71%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.86%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.86%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.86%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.90%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.90%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.95%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.95%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886006	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003992	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1	Environmental	Open in IMG/M
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005873	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301	Environmental	Open in IMG/M
3300005876	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401	Environmental	Open in IMG/M
3300005884	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_302	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014263	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1	Environmental	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025791	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025792	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025796	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026066	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1 (SPAdes)	Environmental	Open in IMG/M
3300027395	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027424	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027543	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL3b_0706.00001900	2162886006	Switchgrass Rhizosphere	MHMKTLRPFKQLFSFATMLALAFSILALPGTAWSGLRDDVREFHAFLRYHPRISADLNANPNLVNSWRYLNQHEDLARFLRSRPALREEVRVNPVRVMRSSYAYGPYDPYDRYGRWR
ICCgaii200_09696523	2228664021	Soil	MKTFTPVRQVYSVALMLALALAVLVAPGTAWSSLRDEVRDFHLFLQDRPRMSADLRANPNLVNSRRYLDQHEDLARFLRRRPALRDEIRYNPNRVFGSSSVYNRYDRYDRYDRFGRWR
ICCgaii200_09699811	2228664021	Soil	MKTFTPVRQVYSVALMLALALAALVAPGTAWSSLRDEVRDFHLFLQDRPRMSADLRANPNLVNSRRYLDQHEDLARFLRRRPALRDEIRYNPNRVFGSSSVYNRYDRYDRYDRFG
ICChiseqgaiiDRAFT_06569222	3300000033	Soil	MKVFANSKSIFSLAAVLALSISVLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVLGRSYAYDRYDRFGRRR*
F24TB_110412151	3300000550	Soil	MNAFKNSKYISSVAIILALALSVLSTPGTAWSSMRDDVREFHLFLQDHPRVSSDLRANPNLVHNRRYMAQHDDLARFLRNRPGLRQEIASNPDRVFGRYYTYGRNDRYDRFDGFGRWR*
JGI10215J12807_12349852	3300000881	Soil	NFFNNSPADPSNQAKEDDMKTFTPVRQVYSVALMLALALAVLVAPGTAWSSLRDEVRDFHLFLQDRPRMSADLRANPNLVNSRRYLDQHEDLARFLRRRPALRDEIRYNPNRVFGSSSVYNRYDRYDRYDRFGRWR*
JGI11643J12802_116834431	3300000890	Soil	SVLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVLGRSYAYDRYDRF
JGI10214J12806_117190271	3300000891	Soil	MKTFTPVRQVYSVALMLALALAVLVAPGTAWSSLRDEVRDFHLFLQDRPRMSADLRANPNLVNSRRYLDQHEDLARFLRRRPALRDEIRYNPNRV
F14TB_1028220202	3300001431	Soil	MNAFKNSKYISSVAIILALALSVLSTPGTAWSSMRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMAQHDDLARFLRNRPGLRQEIASNPDRVFGRYYTYGRNDRYDRFDGFGRWR*
Ga0055470_101630401	3300003992	Natural And Restored Wetlands	VFANSKSIFSLATVLALSISLLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRSYAYDRYDRFGRRR*
Ga0055466_100416652	3300003997	Natural And Restored Wetlands	MKVFANSKSIFSLAIVLALSISLLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRSYAYDRYDRFGRRR
Ga0063356_1007082082	3300004463	Arabidopsis Thaliana Rhizosphere	MKTFTPVRQVFSFAIMLALAFSVLATPGTAWSSLRDEVREFHLFMRDRPRIYADLRANPNLVHSRRYLDQHEDLARFLRRRPALREEIRYNPNRVFSRYYINDRYDRYDRFGRWR*
Ga0063356_1021827732	3300004463	Arabidopsis Thaliana Rhizosphere	MKTLKPFKQIFSFAMMLALALSVLALPGTAWSGLRDDMRDFHIFLRNHPRIAADLNVNPNLVNSWRYLDQHEELARFLRGRPALREEVRVNPVRVMRSSYAYGPYDRYDR
Ga0063356_1033986931	3300004463	Arabidopsis Thaliana Rhizosphere	LVAPGTAWSSLRDEVRDFHLFLQDRPRMSADLRANPNLVNSRRYLDQHEDLARFLRRRPALRDEIRYNPNRVFGSSSVYNRYDRYDRYDRFGRWR*
Ga0062592_1002160041	3300004480	Soil	RWAINFFNNSPADPSNQAKEDDMKTFTPVRQVYSVALMLALALAVLVAPGTAWSSLRDEVRDFHLFLQDRPRMSADLRANPNLVNSRRYLDQHEDLARFLRRRPALRDEIRYNPNRVFGSSSVYNRYDRYDRYDRFGRWR*
Ga0066676_102778072	3300005186	Soil	MNTFKNSKYISSVAIILALALSVLSTPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRHRPGLRQEIASNPDRVFGRYYTNGRYGAYDRYDRFGRWR*
Ga0065705_101918163	3300005294	Switchgrass Rhizosphere	MKTLRPFKQLFSFATMLALAFSILALPGTAWSGLRDDVREFHAFLRYHPRISADLNANPNLVNSWRYLNQHEDLARFLRSRPALREEVRVNPVRVMRSSYAYGPYDPYDRYGRWR*
Ga0065707_100016716	3300005295	Switchgrass Rhizosphere	MHMKTLRPFKQLFSFATMLVLALSILALPGTAWSSLRDDVREFHAFLRYHPRISADLNANPNLVNSWRYLNQHEDLARFLRSRPALREEVRVNPVRVMRSSYAYGPYDPYDRYGRWR*
Ga0066686_110613322	3300005446	Soil	MNTFKNSKYISSVAIILALALSVLSTPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRNRPGLRQEIALNPDRVFGRYYTNGRYG
Ga0066686_111212721	3300005446	Soil	LALALSVLSTPGTAWSSLRDDIREFHSFLRDHPRVSSDLSANPNLVNSRRYMEQHDDLARFLRHRPGLRQEIASNPDRVFGRYYTNGRYGAYDRYDRFGRWR*
Ga0070698_1018007291	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MNAFKHSKYISSVAIILALALSVLSTPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRNRPGLRQEIASNPDRVFGRYYTNGRYGAYDRYGGYDRYDRFGRWR*
Ga0066695_101507552	3300005553	Soil	MNTFKNSKYISSVAIILALALSVLSTPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRHRPGLRHEIASNPDRVFGRYYTNGRYGPYDRYDRFDRFGRWR*
Ga0075287_10003764	3300005873	Rice Paddy Soil	MEVFANSKSIFSLAIVLALSISLLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRSYAYDRYDRFGRRR*
Ga0075300_10084372	3300005876	Rice Paddy Soil	MKVFANSKSIFSLAIVLALSISVLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRSYAYDRYDRFGRRR*
Ga0075291_10003613	3300005884	Rice Paddy Soil	MKVFANSKSIFSLAIVLALSISLLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRSYAYDRYDRFGRRR*
Ga0075417_100101232	3300006049	Populus Rhizosphere	MDAFKNSKYISSVAIILALALSVLSIPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRHRPGLRQEIASNPDRVFGRYYTYGRYGAYDRYGGYDRYDRFGRWR*
Ga0075417_100624152	3300006049	Populus Rhizosphere	PGTAWSSMRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMTQHDDLARFLRNRPGLRQEIASNPDRVFGRYYTNGRYGGYDRYDRFGRWR*
Ga0075417_102290792	3300006049	Populus Rhizosphere	MKTLNRLKYVFPVVMVALALSILGTPGAAWSSLRDDIREFHLFLRDHPRISSELRANPNLVSNRRYMYQRDDLARFLWRRPGLRQEIVNNPDRVFGRSYAYGSRYNWYDRYDRFDRWRDR
Ga0075428_1008218271	3300006844	Populus Rhizosphere	MNAFKNSKYISSVAIILALALSVLSTPGTAWSSMRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMTQHDDLARFLRNRPGLRQEIASNPDRVFGRYYTNG
Ga0075421_1000220652	3300006845	Populus Rhizosphere	MKTFTPVRQVYSVALMLALALAALVAPGTAWSSLRDEVRDFHLFLQDRPRMSADLRANPNLVNSRRYLDQHEDLARFLRRRPALRDEIRYNPNRVFGSSSVYNRYDRYDRYDRFGRWR*
Ga0075421_1008045942	3300006845	Populus Rhizosphere	MNAFKNSKYISSVAIILALALSVLSTPGTAWSSMRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMTQHDDLARFLRNRPGLRQEIASNPD
Ga0075421_1026668261	3300006845	Populus Rhizosphere	MRIFATVSKVFPLAVMFALALSVLAAPATAWSSLRDEIREFHSFLQDRPRISTDLRANPNLVNSRRYLDQHTELARFLRRRPALRDEIRSNPNRVFGRSYAYERYDRYDRYGPVGRWR*
Ga0075431_1001105922	3300006847	Populus Rhizosphere	MKTFTPVRQVYSVALMLALALAVLVAPGTAWSSLRDEVRDFHLFLQDRPRMSADLRANPNLVNSRRYLDQHEDLARFLRRRPALRDEIRYNPNRVFGSSSVYNRYDRYDRYDRFGRWR*
Ga0075433_100209964	3300006852	Populus Rhizosphere	MDAFKNSKYISSVAIILALALSVLSTPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRHRPGLRQEIASNPDRVFGRYYTYGRYGAYDRYGGYDRYDRFGRWR*
Ga0075420_1015812661	3300006853	Populus Rhizosphere	MKTFTPVRQVYSVALMLALALAVLVAPGTAWSSLRDEVRDFHLFLQDRPRMSADLRANPNLVNSRRYLDQHEDLARFLRRRPALRDEIRYNPNRVFGSSSVYNRYDRYDRYDRF
Ga0073934_101126042	3300006865	Hot Spring Sediment	MKVLSRSKHFFALATLALALSVIAAPGLAWSGLRDDIREFHMFLRDHPRIASELRANPRLVYNRRYLDERERLARFLRGRPGLRQEIAQNPDRVFGRSYAYGPYDRYDRYDRLRPWWR*
Ga0079217_100063293	3300006876	Agricultural Soil	MKTFTSVKRVFSIAVMLALAFSVLAAPGTAWSSLRDEVREFHLFMRDRPRISADLRANPNLVNNRRYLNQHEDLARFLRRRPALRDEIRYNPNRVFSRYYVNDRYDRYDRYDRFGRWR*
Ga0079215_100114292	3300006894	Agricultural Soil	MKTFTSVKRVFSIAVMLALAFSVLAAPGTAWSSLRDEVREFHLFMRDRPRISADLRANPNLVNNRRYLNQHEDLARFLRRRPALRDEIRYNPNRVFSRYYVNDRYDRYDRFGRWR*
Ga0079216_115872371	3300006918	Agricultural Soil	KRVFSIAVMLALAFSVLAAPGTAWSSLRDEVREFHLFMRDRPRISADLRANPNLVNNRRYLNQHEDLARFLRRRPALRDEIRYNPNRVFSRYYVNDRYDRYDRYDRFGRWR*
Ga0079218_116347461	3300007004	Agricultural Soil	MKQLKNVFWVPMMLAFALSIFAVPGSAWSSLRDDIREFHMFLQDHPRISSELRANPNLVNNRRYLDERDELARFLRRRPGLRQEIVYNPDRVFSRSYSYNRYNRYDRYDRYSRWR*
Ga0066710_1006930992	3300009012	Grasslands Soil	MNTFKNSKYISSVAIILALALSVLSTPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLIHNRRYMDQHDDLARFLRHRPGLRQEIASNPDRVFGRYYTNGRYGAYDRYGGYDRYDRFGRWR
Ga0066710_1015223901	3300009012	Grasslands Soil	MNAFKNSKYISLVAIMLALALSVLSTPGTAWSSLRDDVREFHSFLRDHPRVSADLSANPNLVNSRRYMEQHDDLARFLRRRPGLRQEIALNPDRVFGRYYTNGRYGPYDRYDRFDRFGRW
Ga0105107_101676682	3300009087	Freshwater Sediment	MKVFANSKSILSFAAVLALSISVLSIPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRYYAYDRFGRWR*
Ga0075418_101840041	3300009100	Populus Rhizosphere	MNAFKNSKYISSVAIILALALSVLSTPGTAWSSMRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMTQHDDLARFLRNRPGLRQEIASNPDRVFGRYYTNGRYGGYDRYDRFGRWR*
Ga0066709_1043414431	3300009137	Grasslands Soil	MNAFKNSKYRSSVAIILALALSVLSTPSTAWSSMRDDVREFHSFLRDHPRVSADLSANPNLVNSRRYMEQHDDLARFLRRRPGLRQEIALNPDRVFGRYYTNGRYGPYDRYDRFDRFGRWR*
Ga0114129_101130513	3300009147	Populus Rhizosphere	MKTKHTFFVAMLLTLALSILGTPGAAWSSLRDDIRDFHVFLQDRPRISSELRANPSLVYNRRYMYERGDLARFLWRRPGLRQEIANNPDRVFGRHYAYGNRYGWNDRYSWNDRYDRYDRWRDR*
Ga0114129_101199222	3300009147	Populus Rhizosphere	MNAFKNSKYISSVAIILALALSVLSTPDTAWSSMRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMTQHDDLARFLRNRPGLRQEIASNPDRVFGRYYTNGRYGGYDRYDRFGRWR*
Ga0105092_101862091	3300009157	Freshwater Sediment	VSVMVALALSVIVLPGTAWSSLRDEVRDFHLFMRDRPRIAADLRANPNLVNNRRYLDQHEDLERFLRRRPALRDEIRYNPSRVFSSSYTYGRYDRYDRYDRFGRWR*
Ga0075423_123899581	3300009162	Populus Rhizosphere	MNAFKNSKYISSVAIILALALSVLSIPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRHRPGLRQEIASNPDRVFGRYYTYGRYGAYDRYGGYDRYDRFGRWR*
Ga0105088_10523452	3300009810	Groundwater Sand	MKTLNRLKYVFSVVMVALALSILGTPGAAWSSLRDDIREFHLFLRDHPRISSELRANPNLVNNRRYMYQRDDLARFLWRRPGLRQEIVNNPDRVFGR
Ga0134071_106017221	3300010336	Grasslands Soil	MNAFKNSKYISAVAIMLALALSVLSTPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRNRPGLRQEIASNPDRVFGRYYTNGRYGAYDRYGGYD
Ga0134127_102823992	3300010399	Terrestrial Soil	MKTFTPVRQVYSVALMLALALAVLVAPGTAWSSLRDEVRDFHLFLQDRPRMSADLRANPNLVNSRRYLDQHEDLARFLRRRPALRDEIRYNPNRVFRSSSVYDRYDRYDRYDRFGRWR*
Ga0134127_103747462	3300010399	Terrestrial Soil	MKTLKPFKQIFSFAMMLALALSVLALPGTAWSGLRDDMRDFHIFLRNHPRIAADLNVNPNLVNSWRYLDQHEELARFLRGRPALREEVRVNPVRVMRSSYAYGPYDRYDRYGRWR*
Ga0134127_129216401	3300010399	Terrestrial Soil	FSFATMLVLALSILALPGTAWSSLRDDVREFHAFLRYHPRISADLNANPNLVNSWRYLNQHEDLARFLRSRPALREEVRVNPVRVMRSSYAYGPYDPYDRYGRWR*
Ga0134123_115405631	3300010403	Terrestrial Soil	MKTLKPFKQIFSFAMMLALALSVLALPGTAWSGLRDDMRDFHIFLRNHPRIAADLNVNPNLVNSWRYLDQHEELARFLRGRPALREEVRVNP
Ga0137374_100611763	3300012204	Vadose Zone Soil	MNAFKNSKYISAVAIILALALSVLSTPGTAWSSLRDDIREFHSFLRDHPRVSADLSANPNLVNSRRYMEQHDELARFLRRRPGLRQEIALNPDRVFGRSYTYGRYGAYDRYGGYDRYDRFGRWR*
Ga0137374_105567002	3300012204	Vadose Zone Soil	MNAFKNSKYISSVAIILALALSVLSTPSTAWSSMRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRHRPGLRQEIALNPDRVFGRYYTNGRYDRYDRDRFGRWR*
Ga0137387_106337061	3300012349	Vadose Zone Soil	MNAFKNSKYISSVAIILALALSVLSTPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRHRPGLRQEIASNPDRVFGRYYTNGRYGAYDRYDRFGRWR*
Ga0137369_103383272	3300012355	Vadose Zone Soil	MKALTRSKHVFSLAVLLALALSVFGAPGVAWSSLRDDVRDFHSFLRDRPRVSSELRSNPNLVNNRRYMERNDDLARFLRRRPELRQEIVYNPDRVFGRYYAYDRYDGRDRSDRFGRWR*
Ga0137369_106412452	3300012355	Vadose Zone Soil	MNAFKNSKYISAVAIILALALSVLSTPGTAWSSLRDDIREFHSFLRDHPRVSADLSANPNLVNSRRYMEQHDELARFLRRRPGLRQEIALNPDRVFDRYYTSGRYGAY
Ga0137375_101447162	3300012360	Vadose Zone Soil	MKALTRSKHVFSLAVLLALALSVFGAPGVAWSSLRDDVRDFHSFLRDRPRMSSELRSNPNLVNNRRYMERNDDLARFLRRRPELRQEIVYNPDRVFGRYYAYDRYDGRDRYDRFGRWR*
Ga0137375_101625251	3300012360	Vadose Zone Soil	MNAFKNSKYISSVAIILALALSVLSTPGTAWSSLRDDIREFHSFLRDHPRVSADLSANPNLVNSRRYMEQHDELARFLRRRPGLRQEIALNPDRVFGRSYTYGRYGAYDRYGGYDRYDRFGRWR*
Ga0137404_103060882	3300012929	Vadose Zone Soil	MNAFKNSKYISLVAIMLALALSVLSTPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRNRPGLRQEIALNPDRVFGRYYTNGRYGPYDRYDRFDRFGRWR*
Ga0137404_120580231	3300012929	Vadose Zone Soil	MNAFKNSKYISAVAIMLALALSVLSTPGTAWSSLRDDIREFHSFLRDHPRVSSDLSANPNLVNSRRYMEQHDDLARFLRHRPGLRQEIASNPDRVFGRYYTNGR
Ga0137407_100577613	3300012930	Vadose Zone Soil	MNTFKNSKYISSVAIILALALSVLSTPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRNRPGLRQEIALNPDRVFGRYYTNGRYGPYDRYDRFDRFGRWR*
Ga0075324_11216911	3300014263	Natural And Restored Wetlands	MKVFANSKSIFSLAIVLALSISLLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRSYAYDRYDTFGRRR*
Ga0075322_10059902	3300014311	Natural And Restored Wetlands	MKVFANSKSIFSLATVLALSISLLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRSYAYDRYDRFGRRR*
Ga0137403_100526906	3300015264	Vadose Zone Soil	MNAFKNSKYISAVAIMLALALSVLSTPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRHRPGLRQEIASNPDRVFGRYYTNGRYGPYDRYDRFDRFGRWR*
Ga0184608_100239583	3300018028	Groundwater Sediment	ALALSVFSAPGVAWSSMRDDVRDFHSFLRDRPRMSSELRSNPNLVTNRRYMERNDDLARFLRRRPGLRQEIVYNPDRVFGRYYAYDRYDGRERYDRFGRWR
Ga0184621_102243652	3300018054	Groundwater Sediment	MKALNRSKHVFSLAVLLALALSVFSAPGVAWSSMRDDVRDFHSFLRDRPRMSSELRSNPNLVNNRRYMERNDDLARFLRRRPGLRQEIVYNPDRVFGRYYAYD
Ga0184623_104324361	3300018056	Groundwater Sediment	NPPAASSKQVKEDDMKTFTPVKQVFSVAVMLALALSVLATPGTAWSSLRDEVREFHLFLQDRPRISADLRANPNLVNSRRYLDQHEDLARFLRRRPALRDEIRYNPTRVFSRSYAYDRYDRYDRYGRWR
Ga0184619_105143241	3300018061	Groundwater Sediment	SVFGAPGVAWSSMRDDVRDFHSFLRDRPRMSSELRSNPNLVNNRRYMERNDDLARFLRRRPGLRQEIVYNPDRVFGRYYAYDRYDGRERYDRFGRWR
Ga0184618_102217701	3300018071	Groundwater Sediment	MKALNRSKHVFSLAVLLALALSVFSAPGVAWSSMRDDVRDFHSFLRDRPRMSSELRSNPNLVNNRRYMERNDDLARFLRRRPGLRQEIVYNPDRVFGRYYAYDRYDGRERYDRFGRWR
Ga0184609_100306473	3300018076	Groundwater Sediment	MKALNRSKHVFSLAVLLALALSVFSAPGVAWSSMRDDVRDFHSFLRDRPRMSSELRSNPNLVNNRRYMERNDDLARFLRRRPELRQEIVYNPDRVFGRYYAYDRYDGRDRYDRFGRWR
Ga0190265_102450593	3300018422	Soil	MKTFTPVKRVFSIAVMLALAFSVLAAPGTAWSSLRDEVREFHLFMRDRPRIAADLRANPNLVGSRRYLDEHEDLARFLRRRPALRDEIRYNPNRVFSRYYVNDRYDRYDRFGRWR
Ga0190265_133011671	3300018422	Soil	MKPFTPDKQLFSVAVMLAIALSVLAAPGIAWSSLRDDVREFHFFLRDRPRISADLRANPNLVNSRRYLDQHEDLAHFLRRRPALREQIRYNPNRVFSRYYVYDRYD
Ga0184643_10699512	3300019255	Groundwater Sediment	MKALNRSKQVFSLAVLLALALSVFSAPGVAWSSMRDDVRDFHSFLRDRPRMSSELRSNPNLVNNRRYMERNDDLARFLRRRPGLRQEIVYNPDRVFGRYYAYD
Ga0190264_121230321	3300019377	Soil	MKTFALVKQVFSVAVMLVLALSVFAAPGTAWSSLRDEVREFHFFLRDRPRISADLRANPNLVSSRRYLGQHEDLAHFLRRRPALREEIRYNPSRVFGRYYVYDRYDRYDRYDRFGRWR
Ga0210382_102435951	3300021080	Groundwater Sediment	MKALNRSKHVFSLAVLLALALSVFGAPGVAWSSMRDDVRDFHSFLRDRPRVSSELRSNPNLVNNRRYMERNDDLARFLRRRPELRQEIVYNPDRVFGRYYAYDRYDGRDRYDRFGRWR
Ga0224452_12652721	3300022534	Groundwater Sediment	MKALNRSKQVFSLAVLLALALSVFGAPGVAWSSMRDDVRDFHSFLRDRPRMSSELRSNPNLVNNRRYMERNDDLARFLRRRPELRQEIVYNPDRVFGRYYAYDRYDGRDRYDRFGRWR
Ga0222623_100374092	3300022694	Groundwater Sediment	MKALNRSNHVFSLAVLLALALSVFSAPGVAWSSMRDDVRDFHSFLRDRPRMSSELRSNPNLVNNRRYMERNDDLARFLRRRPGLRQEIVYNPDRVFGRYYAYDRYDGRERYDRFGRWR
Ga0222622_101451592	3300022756	Groundwater Sediment	MKALNRSKQVFSLAVLLALALSVFGAPGVAWSSMRDDVRDFHSFLRDRPRMSSELRSNPNLVNNRRYMERNDDLARFLRRRPGLRQEIVYNPDRVFGRYYAYDRYDGRERYDRFGRWR
Ga0209172_101611002	3300025310	Hot Spring Sediment	MKVLSRSKHFFALATLALALSVIAAPGLAWSGLRDDIREFHMFLRDHPRIASELRANPRLVYNRRYLDERERLARFLRGRPGLRQEIAQNPDRVFGRSYAYGPYDRYDRYDRLRPWWR
Ga0210076_100014014	3300025567	Natural And Restored Wetlands	MKVFANSKSIFSLATVLALSISLLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRSYAYDRYDRFGRRR
Ga0210115_10463651	3300025791	Natural And Restored Wetlands	MKVFANSKSIFSLAIVLALSISLLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDRHEDLARFLRRRPGLRNEIRSNPNRVFGRSYAYDRYDTFGRRR
Ga0210143_10453321	3300025792	Natural And Restored Wetlands	MKVFANSKSIFSLAAVLALSISVLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRSYAYDRYDRFGRRR
Ga0210113_10225921	3300025796	Natural And Restored Wetlands	MKVFANSKSIFSLAAVLALSISVLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDRHEDLARFLRRRPGLRNEIRSNPNRVFGRSYAYDRYDTFGRRR
Ga0208290_10341651	3300026066	Natural And Restored Wetlands	TVLALSISLLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRSYAYDRYDRFGRRR
Ga0209996_10142392	3300027395	Arabidopsis Thaliana Rhizosphere	MKVFANSKSIFSLAAVLALSISVLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRYYAYDRYDRFGR
Ga0209984_10680981	3300027424	Arabidopsis Thaliana Rhizosphere	MKVFANSKSIFSLAAVLALSISVLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPN
Ga0209999_10672252	3300027543	Arabidopsis Thaliana Rhizosphere	MKVFANSKSIFSLAAVLALSISVLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRYYAYDRYDRFGRWR
Ga0209982_10482332	3300027552	Arabidopsis Thaliana Rhizosphere	MKVFANSKSIFSLATVLALSISLLSVPGTAWSGLRDDVREFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVLGRSYAYDRYDRFGRRR
Ga0209387_10837101	3300027639	Agricultural Soil	MKTFTSVKRVFSIAVMLALAFSVLAAPGTAWSSLRDEVREFHLFMRDRPRISADLRANPNLVNNRRYLNQHEDLARFLRRRPALRDEIRYNPNRVFSRYYVNDRYDRYDRFGRWR
Ga0209971_10052192	3300027682	Arabidopsis Thaliana Rhizosphere	MKVFANSKSIFSLAAVLALSISVLSVPGTAWSGLRDDVRDFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVFGRSYAYDRYDRFGRRR
Ga0209485_12324391	3300027691	Agricultural Soil	MKTFTSVKRVFSIAVMLALAFSVLAAPGTAWSSLRDEVREFHLFMRDRPRISADLRANPNLVNNRRYLNQHEDLARFLRRRPALRDEIRYNPNRVFSRYYVN
Ga0209485_12762521	3300027691	Agricultural Soil	RVFSIAVMLALAFSVLAAPGTAWSSLRDEVREFHLFMRDRPRISADLRANPNLVNNRRYLNQHEDLARFLRRRPALRDEIRYNPNRVFSRYYVNDRYDRYDRYDRFGRWR
Ga0209998_100050102	3300027717	Arabidopsis Thaliana Rhizosphere	MKVFANSKSIFSLAAVLALSISVLSVPGTAWSGLRDDVRDFHLFLRDHPRVSADLRANPNLVNSRRYLDQHEDLARFLRRRPGLRDEIRSNPNRVLGRSYAYDRYDRFGRRR
Ga0209814_100064314	3300027873	Populus Rhizosphere	MDAFKNSKYISSVAIILALALSVLSTPGTAWSSLRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMDQHDDLARFLRHRPGLRQEIASNPDRVFGRYYTYGRYGAYDRYGGYDRYDRFGRWR
Ga0209814_100419883	3300027873	Populus Rhizosphere	PGTAWSSMRDDVREFHLFLQDHPRISSDLRANPNLVHNRRYMTQHDDLARFLRNRPGLRQEIASNPDRVFGRYYTNGRYGGYDRYDRFGRWR
Ga0209974_100134681	3300027876	Arabidopsis Thaliana Rhizosphere	MKVFANRKSIFSLAAILVLSISVLSIPGTAWSGLRDDVREFHLFLRDHPRVSSDLRSNPNLVNSRRYLDQHEALARFIRRRPALRDEIRSNPNRVFGRYYAYDRYDRYDRFGRWR
Ga0209486_101954372	3300027886	Agricultural Soil	MKTFTSVKRVFSIAVMLALAFSVLAAPGTAWSSLRDEVREFHLFMRDRPRISADLRANPNLVNNRRYLNQHEDLARFLRRRPALRDEIRYNPNRVFSRYYVNDRYDRYDRYDRFGRWR
Ga0209486_102380101	3300027886	Agricultural Soil	SIAVMLALAFSVLAAPGTAWSSLRDEVREFHLFMRDRPRISADLRANPNLVNNRRYLNQHEDLARFLRRRPALRDEIRYNPNRVFSRYYVNDRYDRYDRFGRWR
(restricted) Ga0255312_11296591	3300031248	Sandy Soil	MKKLKPFKQIFSFAMVLALALSVLALPGTAWSGLRDDMREFHAFLRYHPRISADLNANPNLINSWRYLNQHEDLARFLRNRPALREEIRVNPVRVMRSSYAYGPYDRYDRYGRWR
Ga0310900_115806151	3300031908	Soil	MKTLKPFKQIFSFAMMLALALSVLALPGTAWSGLRDDMRDFHIFLRNHPRIAADLNVNPNLVNSWRYLDQHEELARFLRGRPALREEVRVNPVRVMRSSYAYGPYDRYDRYGRWR
Ga0247830_106368432	3300033551	Soil	MKGGFMKVFANRKSIFSLGAVLALSISVLSIPGTAWSGLRDDVREFHLFLRDHPRVSSDLRSNPNLVNSRRYLDQHEALARFLRRRPALRDEIRSNPNRVFGRYYAYDRYDRYDRFGRWR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters