Metagenome / Metatranscriptome Family F096146

Basic Information
Family ID	F096146
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	49 residues
Representative Sequence	HRRRIRSRQARDLARRRASGTDGLSRLRGNARAMSTAMDENQAGGHALLR
Number of Associated Samples	94
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	24.00 %
% of genes near scaffold ends (potentially truncated)	74.29 %
% of genes from short scaffolds (< 2000 bps)	82.86 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (51.429 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (18.095 % of family members)
Environment Ontology (ENVO)	Unclassified (29.524 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.381 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 74.00% β-sheet: 0.00% Coil/Unstructured: 26.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF12802	MarR_2	15.24
PF02954	HTH_8	7.62
PF00196	GerE	1.90
PF00011	HSP20	1.90
PF10282	Lactonase	1.90
PF13185	GAF_2	1.90
PF01458	SUFBD	0.95
PF12697	Abhydrolase_6	0.95
PF03070	TENA_THI-4	0.95
PF13463	HTH_27	0.95
PF00654	Voltage_CLC	0.95
PF01590	GAF	0.95
PF00128	Alpha-amylase	0.95
PF00589	Phage_integrase	0.95
PF03640	Lipoprotein_15	0.95
PF14251	DUF4346	0.95
PF01979	Amidohydro_1	0.95
PF01037	AsnC_trans_reg	0.95
PF13408	Zn_ribbon_recom	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	1.90
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	0.95
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.95
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.95
COG0719	Fe-S cluster assembly scaffold protein SufB	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.95
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.95
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.95

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.43 %
Unclassified	root	N/A	48.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.43 %
Unclassified	root	N/A	48.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.43 %
Unclassified	root	N/A	48.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	47.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	47.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	31.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.71 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.81 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.90 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.90 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.71 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.90 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.90 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.95 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.95 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.71 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.90 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.90 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.95 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	0.95 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.57 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.71 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.90 %
Streptomyces antimycoticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces antimycoticus	0.95 %
Rhodococcus ruber	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus ruber	0.95 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.95 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459024\|GZRSKLJ01B28OG	Not Available	506	Open in IMG/M
3300003368\|JGI26340J50214_10011314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2821	Open in IMG/M
3300003368\|JGI26340J50214_10035906	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300005187\|Ga0066675_10020031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3758	Open in IMG/M
3300005329\|Ga0070683_100220051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1804	Open in IMG/M
3300005336\|Ga0070680_100520166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1019	Open in IMG/M
3300005340\|Ga0070689_100187789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1682	Open in IMG/M
3300005341\|Ga0070691_10217247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1011	Open in IMG/M
3300005355\|Ga0070671_100144303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2009	Open in IMG/M
3300005436\|Ga0070713_100044887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3619	Open in IMG/M
3300005436\|Ga0070713_100685825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	977	Open in IMG/M
3300005445\|Ga0070708_100175636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2001	Open in IMG/M
3300005526\|Ga0073909_10144027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	987	Open in IMG/M
3300005543\|Ga0070672_100444676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces antimycoticus	1116	Open in IMG/M
3300005554\|Ga0066661_10112554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1639	Open in IMG/M
3300005563\|Ga0068855_100313697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1734	Open in IMG/M
3300005569\|Ga0066705_10381060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	886	Open in IMG/M
3300005602\|Ga0070762_10762466	Not Available	653	Open in IMG/M
3300005614\|Ga0068856_100055734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3901	Open in IMG/M
3300005718\|Ga0068866_10689029	Not Available	700	Open in IMG/M
3300005842\|Ga0068858_100261680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1644	Open in IMG/M
3300006028\|Ga0070717_10400228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1233	Open in IMG/M
3300006028\|Ga0070717_11660467	Not Available	578	Open in IMG/M
3300006034\|Ga0066656_10607806	Not Available	707	Open in IMG/M
3300006173\|Ga0070716_100073837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2013	Open in IMG/M
3300006603\|Ga0074064_10003200	Not Available	1020	Open in IMG/M
3300006796\|Ga0066665_10382511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1157	Open in IMG/M
3300006797\|Ga0066659_10414679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1062	Open in IMG/M
3300007076\|Ga0075435_101547485	Not Available	582	Open in IMG/M
3300009011\|Ga0105251_10110654	Not Available	1251	Open in IMG/M
3300009520\|Ga0116214_1235267	Not Available	694	Open in IMG/M
3300009521\|Ga0116222_1075556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1454	Open in IMG/M
3300009521\|Ga0116222_1267930	Not Available	737	Open in IMG/M
3300009522\|Ga0116218_1036459	All Organisms → cellular organisms → Bacteria	2217	Open in IMG/M
3300009523\|Ga0116221_1279169	Not Available	722	Open in IMG/M
3300009524\|Ga0116225_1210986	Not Available	876	Open in IMG/M
3300009524\|Ga0116225_1367821	Not Available	640	Open in IMG/M
3300009525\|Ga0116220_10012147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3418	Open in IMG/M
3300009672\|Ga0116215_1188411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	911	Open in IMG/M
3300009672\|Ga0116215_1213032	Not Available	849	Open in IMG/M
3300009683\|Ga0116224_10457082	Not Available	608	Open in IMG/M
3300009824\|Ga0116219_10141072	Not Available	1397	Open in IMG/M
3300010322\|Ga0134084_10247311	Not Available	642	Open in IMG/M
3300010333\|Ga0134080_10359735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	665	Open in IMG/M
3300010371\|Ga0134125_12162420	Not Available	605	Open in IMG/M
3300010373\|Ga0134128_11569606	Not Available	724	Open in IMG/M
3300010375\|Ga0105239_10352836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1661	Open in IMG/M
3300010379\|Ga0136449_100612666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1852	Open in IMG/M
3300010379\|Ga0136449_102264898	Not Available	789	Open in IMG/M
3300010399\|Ga0134127_10041221	All Organisms → cellular organisms → Bacteria	3763	Open in IMG/M
3300010876\|Ga0126361_10026928	Not Available	557	Open in IMG/M
3300012189\|Ga0137388_11195179	Not Available	698	Open in IMG/M
3300012198\|Ga0137364_10216969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1405	Open in IMG/M
3300012200\|Ga0137382_10130555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1687	Open in IMG/M
3300012201\|Ga0137365_10496995	Not Available	897	Open in IMG/M
3300012205\|Ga0137362_10156655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1950	Open in IMG/M
3300012206\|Ga0137380_10401344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1217	Open in IMG/M
3300012354\|Ga0137366_10373841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1040	Open in IMG/M
3300012357\|Ga0137384_10399810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1135	Open in IMG/M
3300012907\|Ga0157283_10179738	Not Available	650	Open in IMG/M
3300012913\|Ga0157298_10299143	Not Available	569	Open in IMG/M
3300012922\|Ga0137394_10169786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1859	Open in IMG/M
3300012922\|Ga0137394_10974073	Not Available	706	Open in IMG/M
3300013104\|Ga0157370_10296232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1494	Open in IMG/M
3300013104\|Ga0157370_12006089	Not Available	519	Open in IMG/M
3300013105\|Ga0157369_10083124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3425	Open in IMG/M
3300014164\|Ga0181532_10324762	Not Available	867	Open in IMG/M
3300014325\|Ga0163163_13267841	Not Available	505	Open in IMG/M
3300014497\|Ga0182008_10420137	Not Available	722	Open in IMG/M
3300015373\|Ga0132257_103162320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	600	Open in IMG/M
3300017930\|Ga0187825_10286567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	611	Open in IMG/M
3300019192\|Ga0184603_114484	Not Available	576	Open in IMG/M
3300019362\|Ga0173479_10799529	Not Available	522	Open in IMG/M
3300021363\|Ga0193699_10263686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	718	Open in IMG/M
3300021402\|Ga0210385_11452421	Not Available	524	Open in IMG/M
3300021858\|Ga0213852_1046874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	844	Open in IMG/M
3300025910\|Ga0207684_10834260	Not Available	778	Open in IMG/M
3300025914\|Ga0207671_10899673	Not Available	700	Open in IMG/M
3300025915\|Ga0207693_10752407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	753	Open in IMG/M
3300025916\|Ga0207663_11584916	Not Available	527	Open in IMG/M
3300025949\|Ga0207667_10463227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1287	Open in IMG/M
3300026542\|Ga0209805_1452420	Not Available	501	Open in IMG/M
3300027310\|Ga0207983_1005461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1392	Open in IMG/M
3300027604\|Ga0208324_1002598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6718	Open in IMG/M
3300027727\|Ga0209328_10076286	Not Available	1025	Open in IMG/M
3300027812\|Ga0209656_10221125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus ruber	908	Open in IMG/M
3300027824\|Ga0209040_10091367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1740	Open in IMG/M
3300027824\|Ga0209040_10099638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1647	Open in IMG/M
3300027825\|Ga0209039_10101767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1232	Open in IMG/M
3300027905\|Ga0209415_10739430	Not Available	697	Open in IMG/M
3300028768\|Ga0307280_10004831	All Organisms → cellular organisms → Bacteria	3473	Open in IMG/M
3300028791\|Ga0307290_10337489	Not Available	552	Open in IMG/M
3300028808\|Ga0302228_10254660	Not Available	791	Open in IMG/M
3300030053\|Ga0302177_10094616	Not Available	1736	Open in IMG/M
3300030494\|Ga0310037_10095320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1383	Open in IMG/M
3300030707\|Ga0310038_10091977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1603	Open in IMG/M
3300031708\|Ga0310686_102782060	Not Available	774	Open in IMG/M
3300032160\|Ga0311301_11035198	Not Available	1079	Open in IMG/M
3300033475\|Ga0310811_10456441	Not Available	1364	Open in IMG/M
3300033475\|Ga0310811_10763944	Not Available	914	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.81%
Host-Associated	Host-Associated	16.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.24%
Plants	Host-Associated → Plants	16.19%
Aquatic	Environmental → Aquatic	8.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.52%
Freshwater	Environmental → Aquatic → Freshwater	8.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.71%
Peat	Environmental → Terrestrial → Peat	1.90%
Roots	Host-Associated → Plants → Roots	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.14%
Loam	Environmental → Terrestrial → Soil → Loam	16.19%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.62%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.62%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.95%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.95%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	18.10%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.67%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.90%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.90%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.95%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.95%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.95%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.95%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300019192	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZA3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021858	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027310	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FD1_08173020	2170459024	Grass Soil	RLASGTDGLSRLRGNARAMSTAIDEDQAGGHALLR
JGI26340J50214_100113144	3300003368	Bog Forest Soil	VSRRRIRSRQARDLARRLASGTDGLSRLRGNARAMSTAMGDNQAGGHALLR*
JGI26340J50214_100359062	3300003368	Bog Forest Soil	VSRRRIRSRQARDLARRLASGTDGLSRLRGDARAMSTAMDENQAGGHALLR*
Ga0066809_100649361	3300005168	Soil	VYRRRIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDEN
Ga0066675_100200316	3300005187	Soil	VYRRGIRSRQASDLARRRASGTGGLSRLRGNARAIITAMDENQADGHALLR*
Ga0070683_1002200512	3300005329	Corn Rhizosphere	VYRRGIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0070680_1005201662	3300005336	Corn Rhizosphere	VYRRGIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDKNQAGGHALLR*
Ga0070689_1001877894	3300005340	Switchgrass Rhizosphere	VSRRRIRSRQARDLARRRASGTGGLSRLRGNARAMSTAMDKNQAGGHALLR*
Ga0070691_102172473	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VSRRRIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDENQA
Ga0070671_1001443032	3300005355	Switchgrass Rhizosphere	VSRRGIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0070713_1000448873	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VSRRRIRSRQASDLARRRASGTGGLSRLRGNARTMSTAMDENQAGGHALLR*
Ga0070713_1006858253	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	CHRRGIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0070708_1001756364	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VSRRRIRSRKASDLARRRASGTDGLSRQRGNARAMSRAMDENQAGGHALLR*
Ga0073909_101440272	3300005526	Surface Soil	VSRRRIRSRQASDLARRRASGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0070672_1004446762	3300005543	Miscanthus Rhizosphere	VSRRRIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0066661_101125543	3300005554	Soil	RRRIRSRQARDLARRLASGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0068855_1003136972	3300005563	Corn Rhizosphere	VYRRRIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDKNQAGGHALLR*
Ga0066705_103810601	3300005569	Soil	VSPLPHRSRQARDLARRRTWGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0070762_107624662	3300005602	Soil	RRLASGTDGLSRLRGNARAMSTAMGDNQAGGHALLR*
Ga0068856_1000557347	3300005614	Corn Rhizosphere	HSSCHRRGIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDKNQAGGHALLR*
Ga0068866_106890292	3300005718	Miscanthus Rhizosphere	VSRRGIRSRQASDLARRRASGTGGLSRLRGNARTMSTAMDENQAGGHALLR*
Ga0068858_1002616803	3300005842	Switchgrass Rhizosphere	SAHWRPEHSSCHRRGIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0070717_104002283	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VYRRRIRSRQASDLARRRASGTGGLSRLRGNARTMSTAMDENQAGGHALLR*
Ga0070717_116604671	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	RIRSRQASDLARRRASGTDGLSRLRGNARAMSTAMDKNQAGGHALLR*
Ga0066656_106078062	3300006034	Soil	HSSCHRRRIRSRQARDLARRLASGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0070715_100254156	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VSRRRIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMD
Ga0070716_1000738373	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VSRRGIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDKNQAGGHALLR*
Ga0070712_1019339793	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VSRRGIRSRQASDLARRRASGTGGLSRLRGNARAMS
Ga0074064_100032002	3300006603	Soil	VSRRRIRSRQARDLARRRASGTGGLSRLRGNAGAMSTAMDENQA
Ga0066665_103825112	3300006796	Soil	VSRRRIRSRQASDLARRLASGTDGLSRPRGNAGAMSTAMGEDQAGGHALLR*
Ga0066659_104146792	3300006797	Soil	VYRRRIRSRQARDLARRRASGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0075435_1015474851	3300007076	Populus Rhizosphere	GSPSSAHWRPEHSSCHRRGIRSRQASDLARRRASGTGGLSRLRGNARAMITAMDENQAGGHALLR*
Ga0105251_101106541	3300009011	Switchgrass Rhizosphere	LARRRASGTDGLSRLRGNARAMSTAMGENQAGGHALLR*
Ga0116214_12352672	3300009520	Peatlands Soil	RRRASGTDGLSRLRGNARAMSTAMGDNQADGHALLR*
Ga0116222_10755563	3300009521	Peatlands Soil	AHRRRIRSRQARDLARRRASGTDGLSRLRGNARAMSTAMGENQAGGHALLR*
Ga0116222_12679302	3300009521	Peatlands Soil	RQARDLARRRASGTDGLSRLRGNARAMSTAMAENQAGGHALLR*
Ga0116218_10364591	3300009522	Peatlands Soil	RIRSRQASDLARRRASGTDGLSRLRGNARAMSTAMGDNQADGHALLR*
Ga0116221_12791692	3300009523	Peatlands Soil	QARDLARRRASGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0116225_12109861	3300009524	Peatlands Soil	IRSRQARDLARRRASGTGGLSRLRGDARAMSTAMGDNQAGGHALLR*
Ga0116225_13678212	3300009524	Peatlands Soil	HRRRIRSRQARDLARRRASGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0116220_100121471	3300009525	Peatlands Soil	SCHRRRIRSRQARDLARRRASGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0116215_11884112	3300009672	Peatlands Soil	AHRRRIRSRQARDLARRRASGTDGLSRLRGNARAMSTAMGDNQAGGHALLR*
Ga0116215_12130321	3300009672	Peatlands Soil	RLASGTDGLSRLRGNARAMSTAMGDNQADGHALLR*
Ga0116224_104570821	3300009683	Peatlands Soil	DLARRRASGTDGLSRLRGNARAMSTAMGDNQAGGHALLR*
Ga0116219_101410721	3300009824	Peatlands Soil	AAHRRRIRSRQARDLARRRASGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0134084_102473112	3300010322	Grasslands Soil	GSPSSAHWQPEHSSCHRRIRSRQASDLARRRASRTGGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0134080_103597351	3300010333	Grasslands Soil	SSCHRRRIRSRQASDLARRLASGTDGLSRPRGNAGAMSTAMGESQAGGHALLR*
Ga0134125_121624201	3300010371	Terrestrial Soil	CHRRGIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDKNQAGGHALLR*
Ga0134128_115696061	3300010373	Terrestrial Soil	IRSRQARDLARRLASGTDGLSRLRGNARAMSTAMDQNQAGGHALLR*
Ga0105239_103528363	3300010375	Corn Rhizosphere	SCHRRGIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDKNQAGGHALLR*
Ga0136449_1006126663	3300010379	Peatlands Soil	IRSRQARDLARRLASGTDGLSRLRGNARAMSTAMDENQAGAHALLR*
Ga0136449_1022648981	3300010379	Peatlands Soil	SCHRRRIRSRQARDLARRRASGTDGLSRLRGNARAMSTAMAENQAGGHALLR*
Ga0134127_100412211	3300010399	Terrestrial Soil	LSSAHGRPGHSSCHRRGIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0126361_100269281	3300010876	Boreal Forest Soil	HLRRIRSRQARDPARRLASGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0137388_111951792	3300012189	Vadose Zone Soil	HWRREHSSCHRRRIRSRQARDLARRLASGTGGLSRLRGDARAMSTAMDVNQADGHALLR*
Ga0137364_102169693	3300012198	Vadose Zone Soil	MASRCIDSSGPSTHWRREHSSCHRRRIRSRQASDLARRRASGTGGLSRLRGNAGAMSTAMDENQAGGHALLR*
Ga0137382_101305553	3300012200	Vadose Zone Soil	MASRCIDSSGPSTHWRREHSSCHRRRIRSRQASDLARRRASGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0137365_104969951	3300012201	Vadose Zone Soil	HSSCHRRRIRSRQARDLARRRASGTDGLSRLRGNAGAMSTAMDENQAGGHALLR*
Ga0137362_101566551	3300012205	Vadose Zone Soil	MRSRQASDLARRRASGTGGLSRLRGNARAMSTAMGENQAGGHALLR*
Ga0137380_104013441	3300012206	Vadose Zone Soil	EHSSCHRRRIRSRQASDLARRRASGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0137366_103738411	3300012354	Vadose Zone Soil	EHSSCHRRRIRSRQARDLARRRASGTGGLSRLRGNAGAMGTAMGENQAGGHALLRYPR*
Ga0137384_103998101	3300012357	Vadose Zone Soil	MASRCIDSSGLSTHWRREHSSCHRRRIRSRQASDLARRRASGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0157283_101797381	3300012907	Soil	RSRQARDLAGRLASGTDGLSRLRGNALAMSTAMDENQADGHALLR*
Ga0157298_102991431	3300012913	Soil	RQASDLARRRASGTGGLSRLRGNARAMSTAMDENQADGHALLR*
Ga0137394_101697861	3300012922	Vadose Zone Soil	RPEHSSCHRRRIRSRQARDLARRRASGTDGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0137394_109740731	3300012922	Vadose Zone Soil	ARDLARRRASGTDGLSRLRGNTSAMSTAMDQNQAGGHALLR*
Ga0164302_100740251	3300012961	Soil	VSPVRIRSRQASDLAPRLATGTDSLSRLRGTASAMTTA
Ga0157370_102962321	3300013104	Corn Rhizosphere	RSRQASDLARRRASGTGGLSRLRGNARAMSTAMDKNQADGHALLR*
Ga0157370_120060892	3300013104	Corn Rhizosphere	RSRQASDLARRRASGTGGLSRLRGNARAMSTAMDQNQAGGHALLR*
Ga0157369_100831245	3300013105	Corn Rhizosphere	HSSCHRRGIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDENQAGGHALLR*
Ga0181532_103247622	3300014164	Bog	LCHRRRIRSRQARDLARRRASGTDGLSRLRGNASAMSTAMDENQ
Ga0163163_132678411	3300014325	Switchgrass Rhizosphere	GRAAGGSPSSAHWRPEHSSCDRRGIRSRQASDLARRRASGTGGLSRLRGNARAMITAMDENQAGGHALLR*
Ga0182008_104201371	3300014497	Rhizosphere	ASDLARRHAAGTGGLSRLRGDARAMSTAMDENQAGGHALLR*
Ga0132257_1031623201	3300015373	Arabidopsis Rhizosphere	RIRSRQARDLARRLASGTDGLSRLRGNARAMSTAVDENQAGGHALLR*
Ga0187825_102865671	3300017930	Freshwater Sediment	SRQARDLARRRASGTDGLSRLRGNARAMSTAMAENQAGGHALLR
Ga0184603_1144841	3300019192	Soil	IRSRQARDLARRLASGTDGLSRLRGNARTMSTAMAENQAGGHALLR
Ga0173479_107995291	3300019362	Soil	WRREHSSCHCRRIRGRQASDLARRRASGTGGLSRLRGNARAMSTAMDEDQAGGHALLR
Ga0193699_102636862	3300021363	Soil	DLARRRASGTDGLSRLRGNARAMSTAMDENQAGGHALLR
Ga0210385_114524212	3300021402	Soil	RDLARRLASGTDGLSRLRGNARAMSTAMDENQAGGHALLR
Ga0213852_10468741	3300021858	Watersheds	RSRQARDLARRRASGTDGLSRLRGNARAMSTAMGDSQAGGHALLR
Ga0207684_108342602	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	ARRRASGTDGLSRLRGNARAMSTAMNENQAGGHALLR
Ga0207671_108996731	3300025914	Corn Rhizosphere	HSSCHRRRIRSRQASDLARRRASGTGGLSRLRGNARAMSTAMDENQAGGHALLR
Ga0207693_107524071	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	ASDLARRRASGTGGLSRLRGNARTMSTAMDENQAGGHALLR
Ga0207663_115849161	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	ARRRASGTGGLSRLRGNARAMSTAMDKNQAGGHALLR
Ga0207667_104632271	3300025949	Corn Rhizosphere	RRPEHSSCHRRRIRSRQASDLARRRASGTGGLSRLRGNARTMSTAMDENQAGGHALLR
Ga0209805_14524201	3300026542	Soil	PEHSLCHRRGIRSRQASDPARRRASGTGGLSRLRGNARAMITAMDENQADGHALLR
Ga0207983_10054611	3300027310	Soil	HRRRIRSRQARDLARRRASGTDGLSRLHGNARAMSTAMDENQAGGHALLR
Ga0208324_10025989	3300027604	Peatlands Soil	RIRSRQARDLARRRASGTDGLSRLRGNARAMSTAMGDNQAGGHALLR
Ga0209328_100762861	3300027727	Forest Soil	GRQARDLARRLASGTGGLSRLRGNARAMSTAMDENQAGGHALLR
Ga0209656_102211252	3300027812	Bog Forest Soil	ERSSCHRRRIRSRQARDLARRLASGTDGLSRLRGNTRAMSTAMGENQADGHALLR
Ga0209040_100913673	3300027824	Bog Forest Soil	RSRQARDLARRLASGTDGLSRLRGNARAMSTAMGDNQAGGHALLR
Ga0209040_100996383	3300027824	Bog Forest Soil	HSSCHRRRIRSRQARDLARRLASGTDGLSRLRGDARAMSTAMDENQAGGHALLR
Ga0209039_101017672	3300027825	Bog Forest Soil	RSRQARDLARRLASGTDGLSRLRGNARAMSTAMDENQAGGHALLR
Ga0209415_107394301	3300027905	Peatlands Soil	ARRRASGTDGLSRLRGNARAMSTAMAENQAGGHALLR
Ga0307280_100048315	3300028768	Soil	RRRIRSRQARDLARRLASGTDDLSRLRGNARAMSTAMDEDQADGHALLR
Ga0307290_103374892	3300028791	Soil	SSAHWRPEHSSCHRRRIRSRQASDLARRRASGTSGLSRLRGNARAMSTAMDENQAGGHALLR
Ga0302228_102546601	3300028808	Palsa	IRSRQARDLARRLASGTDGLSRLRGNARAMSTAMGDNQAGGHALLR
Ga0302177_100946161	3300030053	Palsa	ARRLASGTDGLSRLRGNARAMSTAMGDNQAGGHALLR
Ga0310037_100953201	3300030494	Peatlands Soil	RQARDLARRRASGTDGLSRLRGNARAMSPAMGDNQADGHALLR
Ga0310038_100919773	3300030707	Peatlands Soil	AAKARDLARRRASGTDGLSRLRGNARAMSTAMGDNQADGHALLR
Ga0170818_1138172553	3300031474	Forest Soil	LAARAFIVSPPRIRSRQARDLARRLASGTGGLSRLRGNARAMS
Ga0310686_1027820602	3300031708	Soil	RRIRSRQARDLARRRASGTDGLSRLRGNARAMSTAMGDNQAGGHALLR
Ga0311301_110351981	3300032160	Peatlands Soil	IRSRQARDLARRRASGTDGLSRLRGNARAMSTAMGDSQAGGHALLR
Ga0310811_104564411	3300033475	Soil	ARRLASGTDGLSRLRGNARAMSTAMDENQAGGHALLR
Ga0310811_107639441	3300033475	Soil	RQARDLARRLASGTDGLSRLRGNARAMSTAMDEDQAGGHALLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096146

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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