Metagenome / Metatranscriptome Family F096143

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096143
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	60 residues
Representative Sequence	VDKHDAYLEMRLKIEAVFEHYAAQSEYYKRANIAQRFAMEDAFYRLTMELLGKIIGPFDG
Number of Associated Samples	63
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.19 %
% of genes near scaffold ends (potentially truncated)	24.76 %
% of genes from short scaffolds (< 2000 bps)	76.19 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.238 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (48.571 % of family members)
Environment Ontology (ENVO)	Unclassified (44.762 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.381 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.82% β-sheet: 0.00% Coil/Unstructured: 43.18%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF07238	PilZ	4.76
PF00072	Response_reg	3.81
PF07681	DoxX	2.86
PF12686	DUF3800	2.86
PF14559	TPR_19	1.90
PF06884	DUF1264	1.90
PF04679	DNA_ligase_A_C	1.90
PF01464	SLT	0.95
PF00462	Glutaredoxin	0.95
PF13649	Methyltransf_25	0.95
PF01904	DUF72	0.95
PF01381	HTH_3	0.95
PF16640	Big_3_5	0.95
PF00528	BPD_transp_1	0.95
PF07715	Plug	0.95
PF03544	TonB_C	0.95
PF04226	Transgly_assoc	0.95
PF03729	DUF308	0.95
PF00118	Cpn60_TCP1	0.95
PF02423	OCD_Mu_crystall	0.95
PF14417	MEDS	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	2.86
COG4270	Uncharacterized membrane protein	Function unknown [S]	2.86
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.90
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.95
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.95
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	0.95
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.19 %
Unclassified	root	N/A	43.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.24 %
Unclassified	root	N/A	43.81 %
Viruses	superkingdom	All Organisms → Viruses	0.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.24 %
Unclassified	root	N/A	43.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	38.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	16.19 %
Acidithiobacillia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia	1.90 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.38 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	1.90 %
Acidithiobacillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales	1.90 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.95 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20	0.95 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.95 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.38 %
Acidithiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae	1.90 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	1.90 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.95 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.95 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.38 %
Acidithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	1.90 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	1.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.95 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.95 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.95 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.38 %
Acidithiobacillus albertensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus albertensis	1.90 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	1.90 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.95 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.95 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	0.95 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10455051	Not Available	524	Open in IMG/M
3300002245\|JGIcombinedJ26739_100071483	All Organisms → cellular organisms → Bacteria	3201	Open in IMG/M
3300002245\|JGIcombinedJ26739_100546030	Not Available	1036	Open in IMG/M
3300002907\|JGI25613J43889_10022696	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	1773	Open in IMG/M
3300002914\|JGI25617J43924_10334053	Not Available	525	Open in IMG/M
3300005332\|Ga0066388_101321360	Not Available	1245	Open in IMG/M
3300005518\|Ga0070699_101845478	Not Available	553	Open in IMG/M
3300005518\|Ga0070699_102116674	Not Available	514	Open in IMG/M
3300005557\|Ga0066704_10965449	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300006163\|Ga0070715_10057399	All Organisms → cellular organisms → Bacteria → Acidobacteria	1696	Open in IMG/M
3300007255\|Ga0099791_10027834	All Organisms → cellular organisms → Bacteria → Acidobacteria	2464	Open in IMG/M
3300007265\|Ga0099794_10758649	Not Available	518	Open in IMG/M
3300007788\|Ga0099795_10145751	Not Available	966	Open in IMG/M
3300009038\|Ga0099829_10602482	Not Available	913	Open in IMG/M
3300009089\|Ga0099828_10782754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	855	Open in IMG/M
3300009143\|Ga0099792_10032080	All Organisms → cellular organisms → Bacteria	2441	Open in IMG/M
3300009143\|Ga0099792_10905533	Not Available	584	Open in IMG/M
3300010359\|Ga0126376_10620242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	1026	Open in IMG/M
3300010360\|Ga0126372_12053124	Not Available	619	Open in IMG/M
3300012096\|Ga0137389_10351995	Not Available	1253	Open in IMG/M
3300012096\|Ga0137389_10417373	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300012096\|Ga0137389_11312329	Not Available	618	Open in IMG/M
3300012096\|Ga0137389_11428137	Not Available	587	Open in IMG/M
3300012189\|Ga0137388_10354666	Not Available	1353	Open in IMG/M
3300012189\|Ga0137388_11493020	Not Available	613	Open in IMG/M
3300012200\|Ga0137382_10656741	All Organisms → cellular organisms → Bacteria → Acidobacteria	750	Open in IMG/M
3300012202\|Ga0137363_10273456	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20	1379	Open in IMG/M
3300012202\|Ga0137363_11676472	Not Available	528	Open in IMG/M
3300012203\|Ga0137399_10010858	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5476	Open in IMG/M
3300012203\|Ga0137399_10303518	Not Available	1319	Open in IMG/M
3300012203\|Ga0137399_10601864	Not Available	924	Open in IMG/M
3300012205\|Ga0137362_10526668	Not Available	1021	Open in IMG/M
3300012205\|Ga0137362_10718011	All Organisms → cellular organisms → Bacteria → Acidobacteria	858	Open in IMG/M
3300012205\|Ga0137362_11148713	Not Available	659	Open in IMG/M
3300012361\|Ga0137360_10014092	All Organisms → cellular organisms → Bacteria → Acidobacteria	5176	Open in IMG/M
3300012361\|Ga0137360_10207886	Not Available	1588	Open in IMG/M
3300012362\|Ga0137361_11031601	All Organisms → cellular organisms → Bacteria → Acidobacteria	742	Open in IMG/M
3300012363\|Ga0137390_10511926	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	1174	Open in IMG/M
3300012582\|Ga0137358_10464402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus albertensis	854	Open in IMG/M
3300012683\|Ga0137398_10564901	All Organisms → cellular organisms → Bacteria → Acidobacteria	785	Open in IMG/M
3300012685\|Ga0137397_10880909	Not Available	664	Open in IMG/M
3300012922\|Ga0137394_10122961	All Organisms → cellular organisms → Bacteria → Acidobacteria	2198	Open in IMG/M
3300012923\|Ga0137359_10104226	All Organisms → cellular organisms → Bacteria	2506	Open in IMG/M
3300012923\|Ga0137359_10554200	Not Available	1011	Open in IMG/M
3300012923\|Ga0137359_11123665	Not Available	672	Open in IMG/M
3300012923\|Ga0137359_11331447	Not Available	606	Open in IMG/M
3300012924\|Ga0137413_10142264	Not Available	1556	Open in IMG/M
3300012925\|Ga0137419_10040200	All Organisms → cellular organisms → Bacteria	2944	Open in IMG/M
3300012925\|Ga0137419_10086533	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2134	Open in IMG/M
3300012925\|Ga0137419_10220757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus albertensis	1414	Open in IMG/M
3300012925\|Ga0137419_10726725	Not Available	807	Open in IMG/M
3300015052\|Ga0137411_1311752	All Organisms → cellular organisms → Bacteria → Acidobacteria	2113	Open in IMG/M
3300015241\|Ga0137418_11214789	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300015242\|Ga0137412_10050928	All Organisms → cellular organisms → Bacteria	3376	Open in IMG/M
3300015264\|Ga0137403_11382452	Not Available	552	Open in IMG/M
3300020199\|Ga0179592_10085418	Not Available	1448	Open in IMG/M
3300020199\|Ga0179592_10089311	Not Available	1414	Open in IMG/M
3300020199\|Ga0179592_10370499	Not Available	628	Open in IMG/M
3300020579\|Ga0210407_10322796	All Organisms → cellular organisms → Bacteria → Acidobacteria	1207	Open in IMG/M
3300020580\|Ga0210403_10176893	All Organisms → cellular organisms → Bacteria → Acidobacteria	1749	Open in IMG/M
3300020580\|Ga0210403_10265354	All Organisms → cellular organisms → Bacteria → Acidobacteria	1408	Open in IMG/M
3300020580\|Ga0210403_10394251	Not Available	1131	Open in IMG/M
3300020580\|Ga0210403_11069189	Not Available	628	Open in IMG/M
3300020581\|Ga0210399_10382867	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300020582\|Ga0210395_10851909	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300020583\|Ga0210401_10005414	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13127	Open in IMG/M
3300021088\|Ga0210404_10000309	All Organisms → cellular organisms → Bacteria	27977	Open in IMG/M
3300021088\|Ga0210404_10000527	All Organisms → cellular organisms → Bacteria	19419	Open in IMG/M
3300021088\|Ga0210404_10000581	All Organisms → cellular organisms → Bacteria	18195	Open in IMG/M
3300021088\|Ga0210404_10001354	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10621	Open in IMG/M
3300021088\|Ga0210404_10024440	All Organisms → cellular organisms → Bacteria	2640	Open in IMG/M
3300021088\|Ga0210404_10048517	Not Available	1986	Open in IMG/M
3300021088\|Ga0210404_10053784	All Organisms → cellular organisms → Bacteria → Acidobacteria	1904	Open in IMG/M
3300021088\|Ga0210404_10054303	All Organisms → cellular organisms → Bacteria → Acidobacteria	1896	Open in IMG/M
3300021088\|Ga0210404_10272583	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	925	Open in IMG/M
3300021088\|Ga0210404_10517866	Not Available	674	Open in IMG/M
3300021170\|Ga0210400_10037990	Not Available	3733	Open in IMG/M
3300021170\|Ga0210400_10054076	Not Available	3128	Open in IMG/M
3300021170\|Ga0210400_10549358	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	953	Open in IMG/M
3300021403\|Ga0210397_11545793	Not Available	515	Open in IMG/M
3300021420\|Ga0210394_10934987	All Organisms → cellular organisms → Bacteria → Acidobacteria	753	Open in IMG/M
3300021479\|Ga0210410_10687519	Not Available	904	Open in IMG/M
3300022726\|Ga0242654_10080124	Not Available	989	Open in IMG/M
3300024288\|Ga0179589_10078279	All Organisms → cellular organisms → Bacteria → Acidobacteria	1310	Open in IMG/M
3300025905\|Ga0207685_10039663	All Organisms → cellular organisms → Bacteria → Acidobacteria	1749	Open in IMG/M
3300026285\|Ga0209438_1070504	All Organisms → cellular organisms → Bacteria → Acidobacteria	1141	Open in IMG/M
3300026319\|Ga0209647_1000887	All Organisms → cellular organisms → Bacteria	26853	Open in IMG/M
3300026320\|Ga0209131_1000546	All Organisms → cellular organisms → Bacteria → Acidobacteria	26862	Open in IMG/M
3300026320\|Ga0209131_1156626	All Organisms → cellular organisms → Bacteria → Acidobacteria	1142	Open in IMG/M
3300026320\|Ga0209131_1202533	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	916	Open in IMG/M
3300026482\|Ga0257172_1003029	All Organisms → cellular organisms → Bacteria	2310	Open in IMG/M
3300026551\|Ga0209648_10029795	All Organisms → cellular organisms → Bacteria	4768	Open in IMG/M
3300026555\|Ga0179593_1068084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1568	Open in IMG/M
3300026557\|Ga0179587_10027204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3141	Open in IMG/M
3300027548\|Ga0209523_1018492	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300027603\|Ga0209331_1027191	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1478	Open in IMG/M
3300027603\|Ga0209331_1124229	Not Available	622	Open in IMG/M
3300027651\|Ga0209217_1043397	Not Available	1374	Open in IMG/M
3300027651\|Ga0209217_1043738	All Organisms → cellular organisms → Bacteria → Acidobacteria	1368	Open in IMG/M
3300027651\|Ga0209217_1071057	All Organisms → Viruses → Predicted Viral	1022	Open in IMG/M
3300027651\|Ga0209217_1076042	Not Available	981	Open in IMG/M
3300027671\|Ga0209588_1172256	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	681	Open in IMG/M
3300028047\|Ga0209526_10208530	Not Available	1350	Open in IMG/M
3300028047\|Ga0209526_10905418	Not Available	536	Open in IMG/M
3300028536\|Ga0137415_10170296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2008	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.81%
Loam	Environmental → Terrestrial → Soil → Loam	16.19%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.81%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	48.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.43%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_104550512	3300001867	Forest Soil	MDKHESYLTMRLKIEAVFEHYAAQSEYYQRANIAQRLVMEERFYELSMELLSKIIGPFEVMR*
JGIcombinedJ26739_1000714831	3300002245	Forest Soil	VDKHEAYMKMRFKIEEVFEHYATQSEYYTRANVAQRLVMEDSFYQLSMELLSKIIGPFEVMR*FYALF
JGIcombinedJ26739_1005460301	3300002245	Forest Soil	MPKRDAYIEMRLKIEAVFDHYSAQSEHYKRANIAQRLAMRDSFYRLSMELLSKIIGPFEIVR*
JGI25613J43889_100226961	3300002907	Grasslands Soil	MRFKIESVFEHYATQSEYYKRANIAQRFAMEGAFYRLSMELRSNNQ*
JGI25617J43924_103340531	3300002914	Grasslands Soil	MLKDDDSILMRCKIDEVFEHYAAQSEYYQRANIAQRLKIEDAFCRLTMELLAKII
Ga0066388_1013213601	3300005332	Tropical Forest Soil	MYRRPDHLDVRLKLDAVFEHYAVQSEYYKRANIVQRLQMEDCFYHLTMELLSKIIGPVEVIR*
Ga0070699_1018454782	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MDKHESYLTMRLKIEAVFEHYAAQSEYYQRANIAQRLVMEERFYELSMELLSKII
Ga0070699_1021166742	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MLKDDDSIRMRLKIDEVFEHYAAQSEYYQRANIAQRFKMEDAFYRLTMELLAKIIGPFEIVR*
Ga0066704_109654492	3300005557	Soil	VDNHGIYLEMRLKIEAVFEHYAAQSEYSKRANIVQRFAMEDAFYRLTMESLGKIIGPFEM
Ga0070715_100573993	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VEQHGLYLEMRLKIDSVFEHYAAQSEHYQRANIAQRFAMEDAFYRLSMELLAKILGPFKG
Ga0099791_100278345	3300007255	Vadose Zone Soil	VSRTLVRPNPEAAADKHDAYLEMRFKIEAVFEHYAAQSEYYKRANIAQRLVMEDSFYQLSMELLSKIIGPFEVMRWL*
Ga0099794_107586491	3300007265	Vadose Zone Soil	MPKDDDYILMRCKIDEVFEHYAAQSEYYQRANIAQRFKMEDAFYRLTMELLAKIIGPFEIVR*
Ga0099795_101457511	3300007788	Vadose Zone Soil	MRLKIEDVFEHYAAQSEYYKRANVVQRFAMEDAFYRLTMELLRKIIGPFEVMGR*
Ga0099829_106024823	3300009038	Vadose Zone Soil	DSVLMRCKIDEVFEHYAAQPEYYKRANVAQRLVMEDHFYQLSMELRRKIIGPFEVMR*
Ga0099828_107827542	3300009089	Vadose Zone Soil	MRFKIDAVFEHYAGQSEYYKRANIAQRLAMEDCFYHLTLELLGKIIGPFEPMR*
Ga0099792_100320805	3300009143	Vadose Zone Soil	VDQHQAYLEMRLKIEDVFEHYAAQSEYYKRANVVQRFAMEDAFYRLTMELLRKIIGPFEVMGR*
Ga0099792_109055332	3300009143	Vadose Zone Soil	MNSPDDYLEMRLKIEAVFEHYAAQSEYYRRANIVQRFQMEDCFYHLTLELLSKIIGRFDL
Ga0126376_106202421	3300010359	Tropical Forest Soil	VNRRPDYLDVRLKLDAIFKHYAAQSECYRRATIVQRLQREDCFYHLTMELLSKIIGPVEVIQ*
Ga0126372_120531242	3300010360	Tropical Forest Soil	MGRKQDYLEHAIEIDEVFEHYVAKSEYYRRANTVQRLQMEDCFYHLTMELLSKIIGPFEI
Ga0137389_103519952	3300012096	Vadose Zone Soil	MLKDDDSILMRCKIDEVFERYAAQSEYYQRANIAQRLKMEDAFYRLTMELLAKIIGPFEIVR*
Ga0137389_104173732	3300012096	Vadose Zone Soil	MLKPKADDYILMRCKIDDVFEHYAAQSAYYKRANIAQRFEMEDSFYRLTMELLSKIIGPFEVMR*
Ga0137389_113123292	3300012096	Vadose Zone Soil	TASRGPPAMLYLTMRLKIEAVFEHHAAQSEYYQRANITQRFEMEDTFYRLTMELLAKIIGPFEIVR*
Ga0137389_114281371	3300012096	Vadose Zone Soil	CKIGQVFEYYAAQSEDYKRADVAQRFVVEDSFYQLSMELLSKIIGPFEVML*
Ga0137388_103546664	3300012189	Vadose Zone Soil	MLYLTMRLKIEAVFEHHAAQSEYYQRANITQRFEMEDTFYRLTMELLAKIIGPFEIVR*
Ga0137388_114930201	3300012189	Vadose Zone Soil	MLKDDDSVLMRCKIDEVFERYAAQSEYYQRANIAQRLKMEDAFYRLTMELLAKIIGPFEIVR*
Ga0137382_106567412	3300012200	Vadose Zone Soil	PGGALVEQNDVYLEMRLKIESVFEHYAAQSEHYKRANIVQRFAMQDAFYRLSMELLARIIGPFKI*
Ga0137363_102734562	3300012202	Vadose Zone Soil	VEQNDVYLEMPLKIESVFEHYAAQSEHYKRANIVQRFAMQDTFYRLSMELLARIIGPFKI
Ga0137363_116764722	3300012202	Vadose Zone Soil	MPKPKTNDYILMRCKIGQVFEHYAAQSEFYRRANVAQRFVMEDSFYRLSMELLAKIIGPFEVIVKDAVLF*
Ga0137399_100108586	3300012203	Vadose Zone Soil	VDKHDAYLEMRLKIEAVFEHYAAQLEYYKRANIAQRFAMEDAFYRLTMELLGKIIGPFDG
Ga0137399_103035181	3300012203	Vadose Zone Soil	VDKHDVYLEMRLKIEAVFEHYAAQSEYYKRANIAQRFAMEDAFYRLTMELLGKIIGPFDG
Ga0137399_106018641	3300012203	Vadose Zone Soil	GRRVVDKHEAYLKMRLKIEAVFEHYAAQSEYYRRANIAQRFAMEDAFYRLTMELLGKIIGPFEA*
Ga0137362_105266682	3300012205	Vadose Zone Soil	VKKHADYLEMRVRIESVFEHYAAQSEYYKRANLVQRFAMEDAFYRLTIELLGKIIGPFEVVR*
Ga0137362_107180111	3300012205	Vadose Zone Soil	VEQNDVYLEMRLKIESVFEHYAAQSEHYKRANIVQRFAMQDTFYRLSMELLARII
Ga0137362_111487132	3300012205	Vadose Zone Soil	MLKDDDSVLMRCKIDEVFEHYAAQPEYYKRANVAQRLVMEDHFYQLRMELRRKIIGPFEVMR*
Ga0137360_100140921	3300012361	Vadose Zone Soil	VEQNDVYLEIRLKIESVFEHYAAQSEHYKRANIVQRFAMQDAFYRLSMELLARIIGPFKI
Ga0137360_102078865	3300012361	Vadose Zone Soil	MLKDDDSVLMRCKIDEVFEHYAAQPEYYKRANVAQRLVMEDHFYQLSMELRRKIIGPFEVMR*
Ga0137361_110316012	3300012362	Vadose Zone Soil	VEQNDVYLEMPLKIESVFEHYAAQSEHYKRANIVQRFAMQDAFYRLSMELLARIIGPFKI
Ga0137390_105119261	3300012363	Vadose Zone Soil	VDKHEAYIKMRFKIEAVFEHYAAQSEYYKRANIAQRLAMEDCFYHLTLELLGKI
Ga0137358_104644022	3300012582	Vadose Zone Soil	DAYLEMRLKIEAVFEHYAAQLEYYKRANIAQRFAMEDAFYRLTMELLGKIIGPFDG*
Ga0137398_105649012	3300012683	Vadose Zone Soil	VEQNDVYLEIRLKIESVFEHYAAQSEYYKRANIVQRFAMQDAFYRLSMELLARIIGPFKI
Ga0137397_108809092	3300012685	Vadose Zone Soil	VEHLACLEIPLKIESVFKDYAAQWEYYKRANMVQRLPMEDAFYRLSMKLLTEIIGPFDL*
Ga0137394_101229613	3300012922	Vadose Zone Soil	MTGAWRAIVEHLACLEIPLKIESVFKDYAAQWEYYKRANMVQRLPMEDAFYRLSMKLLTEIIGPFDL*
Ga0137359_101042261	3300012923	Vadose Zone Soil	MLKPKADDYILMRFKIEQVFEHYAVQSEYYKRSNLAQRLVMEDSFYAWSMELLARIIGPFEVMR*
Ga0137359_105542003	3300012923	Vadose Zone Soil	VKKHADYLEMRVRIESVFEHYAAQSEYYKRANLVQRFAMEDAFYRLTIELLGKIIGPFEVMR*
Ga0137359_111236651	3300012923	Vadose Zone Soil	VEKHDVDLEMRIKIEAVFEHYAAQSEYYRRANIAQRLKMEDAFYRLTMELLAKIIGPFEVMR*
Ga0137359_113314471	3300012923	Vadose Zone Soil	MLKDDDYILMRCNIDDVFEHYAAQSEYYKRANIAQRLLMEDRFYQLSIELLSKIIGPFEVMR*
Ga0137413_101422641	3300012924	Vadose Zone Soil	VDQHQAYLEMRLKIEDVFEHYAAQSEYYKRANVVQRFAMEDAFYRLTMELLAKIIGPFEVMGR*
Ga0137419_100402001	3300012925	Vadose Zone Soil	VCPEPGGVMDKHQAYLEMRLKIEAVFEHYAAQSEYYKRANLVQRFAMEDAFYRLTMELLGKIIGPFDA*
Ga0137419_100865331	3300012925	Vadose Zone Soil	VDKHDAYLEMRLKIEAVFEHYAAQSEYYKRANIAQRFAMEDAFYRLTMELLGKIIGPFDG
Ga0137419_102207572	3300012925	Vadose Zone Soil	LEMRLKIEAVFEHYAAQLEYYKRANIAQRFAMEDAFYRLTMELLGKIIGPFDG*
Ga0137419_107267252	3300012925	Vadose Zone Soil	MSGSWRRIVDKHALYLEMRLKIESVFEHYAANSEYYKRANLVQRFAMEDAFYRLTMELL
Ga0137411_13117523	3300015052	Vadose Zone Soil	MSGTWRAIVEHPACLEIPLKIESVFKDAAQREYYKRANMVQRLPMEDAFYRLSMKLLTEIIGPFDL*
Ga0137418_112147891	3300015241	Vadose Zone Soil	CLEIPLKIESVFKDYAAQWEYYKRANMVQRLPMEDAFYRLSMKLLTEIIGPFDL*
Ga0137412_100509281	3300015242	Vadose Zone Soil	MRLKIEDVFEHYAAQSEYYKRANVVQRFAMEDAFYRLTMELLAKIIGPFEVMGR*
Ga0137403_113824521	3300015264	Vadose Zone Soil	MKMRSKIEEVFEHYAAQSEYYKRANIAQRLVMEERCYELSVELLSKIIGPFEVMR*
Ga0179592_100854182	3300020199	Vadose Zone Soil	VDNHGIYLEMRLKIEAVFEHYAAQSEYYKRANIVQRFAMEDAFYRLTMESLGKIIGPFEM
Ga0179592_100893112	3300020199	Vadose Zone Soil	VDQHQAYLEMRLKIEDVFEHYAAQSEYYKRANVVQRFAMEDAFYRLTMELLRKIIGPFEVMGR
Ga0179592_103704992	3300020199	Vadose Zone Soil	AAYIETRCKIDDVFEHYAQQSEYYKRANIQQRFLMEDRFYHLSMELLSKIIGAFEIMGPKRS
Ga0210407_103227961	3300020579	Soil	VKKHDVYLEMRLKIESVFLHYAERSEYYKRANLVERFAMEDAFYNLSMELLAKVIRPFEI
Ga0210403_101768934	3300020580	Soil	MDKQETYLTMRLKIEAVFEHYAAQSEYYKRANIAQRLQMEDAFYRLTKELLAKIIGPFETMR
Ga0210403_102653543	3300020580	Soil	VDKHDVYLEMRLKVEAVFEHYAAQSEYHQRANIAQRFEMEDAFYRLTMELLG
Ga0210403_103942512	3300020580	Soil	MPKRDAYIEMRLKIEAVFKHYSAQSELYKQANVAQRLAMQDSYYQLSMDLLSKIIGPFEITR
Ga0210403_110691892	3300020580	Soil	VRKHDVYLEMRLEIESVFLHYAERSEYYKRANLVERFAIEDAFYNLRMELLAKVIGPFEI
Ga0210399_103828673	3300020581	Soil	AVVRKHDVYLEMRLEIESVFLHYAERSEYYKRANLVERFAIEDAFYNLRMELLAKVIGPFEI
Ga0210395_108519092	3300020582	Soil	VEKHDVYLEMRLKIESVFEHYAAQSEYYKRANIVQRFAMQDAFYRLSMELLARIIGPFKI
Ga0210401_100054142	3300020583	Soil	MSEPGAIVDKHEAYLEMRLKIEAVFEHYAAQSEYYKRANIAQRFAMEDAFYRLTMELLGKIIGPFEIMG
Ga0210404_1000030913	3300021088	Soil	MLKDDDSILMRCKIDEVFEHYAAQSEYYQRANIAQRLKMEDAFYRLTMELLAKIIGPFEIVP
Ga0210404_1000052725	3300021088	Soil	MLKDDDSIRMRLKIDEVFEHYAAQSDYYQRANIAQRFKMEDAFYRLTMELLAKIIGPFEIVR
Ga0210404_100005819	3300021088	Soil	MDKHETYLTMRLKIDEVFEHYAAQSEYYKRANLVQRFAMEDAFYRLSMELLAKIIGPFEV
Ga0210404_100013549	3300021088	Soil	MRLKIDEVFEHYAAQSEYYKRANIAQRFAMEDCFYRLSMELLAKIIGPFEIIR
Ga0210404_100244402	3300021088	Soil	MDKHESYLTMRLEIEAVFEHYAAQSEYYQRANIAQRLVMEERFYELSMELLSKIIGPFDVIR
Ga0210404_100485175	3300021088	Soil	VDKHDVDLEMRFKIEAVFEHYAGQSEYYQRANIAQRFAMEDCFYRLTMELLGKIIGPFEPMQ
Ga0210404_100537845	3300021088	Soil	MDKHQAYLTMRLKIDEVFEHYAKQLEYYKRANLMQRFAMEDAFYRLRELLMKIIGPFEV
Ga0210404_100543034	3300021088	Soil	MDKQETYLTMRLKIEAVFEHYAAQSEYYKRANIAQRLQMEDAFYRLTMELLAKIIGPFEIMR
Ga0210404_102725832	3300021088	Soil	MRLKIEAVFEHYAAQSEYYKRANIAQRFAMEDAFYRLTMELLGKIIGPFEIMG
Ga0210404_105178661	3300021088	Soil	MPKRDAYIEMRLKIEAVFEHYSAQSEHYKRANIAQRLAMRDSFYRLSMELLSKIIGPFEIVR
Ga0210400_100379902	3300021170	Soil	MLKDDDSIRMRLKIDEVFEHYAAQSEYYQRANIAQRFKMEDAFYRLTMELLAKIIGPFEIVR
Ga0210400_100540766	3300021170	Soil	VDKHEAYMKMRFKIEEVFEHYAAQSEYYQRANIAQRFEMEDAFYRLTMELLGKIIGPFEA
Ga0210400_105493581	3300021170	Soil	VDKHQVYLTMRLKIDEVFEHYAKRSEYYQRANIAQRFQMEDAFYRLTMELLGKIIGPFEPMQ
Ga0210397_115457932	3300021403	Soil	MRLKIEAVFEHYAAQSEYYKRANIAQRFAMEDAFYRLTMELQGKIIGPFEIMG
Ga0210394_109349872	3300021420	Soil	VRNPEAIVEKHDVYLEMRLKIESVFEHYAAQSEYYKRANIVQRFAMQDAFYRLSMELLARIIGPFKI
Ga0210410_106875191	3300021479	Soil	VNKHEAYLEMRLKIEAVFEHYAGQSEYYKRANLVQRFAMEDAFYQLSMKLLARIIGPFEIMR
Ga0242654_100801243	3300022726	Soil	EMRLKIEAVFKHYSAQSELYKQANVAQRLAMQDSYYQLSMDLLSKIIGPFEITR
Ga0179589_100782792	3300024288	Vadose Zone Soil	VEQNDVYLEMRLKIESVFEHYAAQSEHYKRANIVQRFAMQDAFYRLSMELLARIIGPFKI
Ga0207685_100396633	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VEQHGLYLEMRLKIDSIFEHYAAQSEHYQRANIAQRFAMEDAFYRLSMELLAKILGPFKG
Ga0209438_10705041	3300026285	Grasslands Soil	VEQNDVYLEMRLKIESVFEHYAAQSEHYKRANIVQRFAMQDTFYRLSMELLARIIGPFKI
Ga0209647_10008874	3300026319	Grasslands Soil	MRFKIGSVFEHYAAQSEYYKRANIAQRFAMEGAFYRLSMELRSNNQ
Ga0209131_10005469	3300026320	Grasslands Soil	MRFKIESVFEHYATQSEYYKRANIAQRFAMEGAFYRLSMELRSNNQ
Ga0209131_11566263	3300026320	Grasslands Soil	VEQNDVYLEIRLKIESVFEHYAAQSEHYKRANIVQRFAMQDTFYRLSMELLA
Ga0209131_12025333	3300026320	Grasslands Soil	NDVYLEMRLKIESVFEHYAAQSEHYKRANIVQRFAMQDTFYRLSMELLARIIGPFKI
Ga0257172_10030294	3300026482	Soil	VDKHDPYLEMRFKIEAVFEHYAAQSEYYKRANIAQRFAMEDAFYRLMMELLGKIIGPFDG
Ga0209648_100297953	3300026551	Grasslands Soil	MLKDDDSILMRCKIDEVFEHYAAQSEYYQRANIAQRLKIEDAFCRLTMELLAKIIGPFEIVR
Ga0179593_10680843	3300026555	Vadose Zone Soil	MRLKIEAVFEHYAAQLEYYKRANIAQRFAMEDAFYRLTMEL
Ga0179587_100272041	3300026557	Vadose Zone Soil	MRLKIEAVFEHYAAQLEYYKRANIAQRFAMEDAFYRLTMELLGKIIGPFDG
Ga0209523_10184923	3300027548	Forest Soil	DKHESYLTMRLKIEAVFEHYAAQSEYYQRANIAQRLVMEERFYELSMELLSKIIGPFEVM
Ga0209331_10271912	3300027603	Forest Soil	VDKHEAYMKMRFKIEEVFEHYATQSEYYTRANVAQRLVMEDSFYQLSMELLSKIIGPFEVMR
Ga0209331_11242292	3300027603	Forest Soil	MPKRDAYIEMRLKIEAVFDHYSAQSEHYKRANIAQRLAMRDSFYRLSMELLSKIIGPFEIVR
Ga0209217_10433972	3300027651	Forest Soil	VDKHEAYMKMRFKIEEVFEPYARQSEYYTRANVAQRLVMEDSFYQLSMELLSKIIGPFEVMR
Ga0209217_10437381	3300027651	Forest Soil	VDRHNVYLETRLKVEAVFEHYAAQSEYYPRANIAQRFEMEDAFYRLTMELLGKIIGPFEA
Ga0209217_10710572	3300027651	Forest Soil	MDKHQAYLTMRLKIDAVFEHYAAQSEYYKRANIAQRFAMEDAFYHLTMELLSKIIGPFEIMR
Ga0209217_10760422	3300027651	Forest Soil	VDKHDAYLEMRIKIEALFEHYVAQSEYYKRANIAQRFAMEDCFYRLTMELLGKIIGPFEVMG
Ga0209588_11722561	3300027671	Vadose Zone Soil	YVRNLEAIVDNHGIYLEMRLKIEAVFEHYAAQSEYYKRANIVQRFAMEDAFYRLTMESLGKIIGPFEM
Ga0209526_102085301	3300028047	Forest Soil	MNKQETYLEMRLKIESVFENYAAQSEYYKRANLVQRFAMMDAFYRLSMEMLAKIIGPFDT
Ga0209526_109054181	3300028047	Forest Soil	VGKHDAYLEMRIKIEALFEHYVAQSEYYKRANIAQRFAMEDCFYRLTMELLGKIIGPFEVMG
Ga0137415_101702962	3300028536	Vadose Zone Soil	MLKPKADDYILMRCKIDDVFEHYAAQSAYYKRANIAQRFEMEDSFYRLTMELLSKIIGPFEVMR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096143

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences