Metagenome Family F096135

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096135
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	53 residues
Representative Sequence	MDRLTNTIRFLRMAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDP
Number of Associated Samples	90
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.52 %
% of genes near scaffold ends (potentially truncated)	25.71 %
% of genes from short scaffolds (< 2000 bps)	83.81 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (19.048 % of family members)
Environment Ontology (ENVO)	Unclassified (30.476 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.286 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.97% β-sheet: 0.00% Coil/Unstructured: 41.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.0: automated matches	d5uwza_	5uwz	0.91318
f.13.1.1: Bacteriorhodopsin-like	d1xioa_	1xio	0.90171
a.25.1.1: Ferritin	d2fzfa1	2fzf	0.88498
a.25.1.1: Ferritin	d1vjxa1	1vjx	0.8838
a.29.13.1: Bacillus cereus metalloprotein-like	d3dbya2	3dby	0.87179

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13404	HTH_AsnC-type	40.95
PF13545	HTH_Crp_2	15.24
PF00072	Response_reg	5.71
PF01266	DAO	1.90
PF01522	Polysacc_deac_1	0.95
PF08448	PAS_4	0.95
PF13412	HTH_24	0.95
PF07732	Cu-oxidase_3	0.95
PF02770	Acyl-CoA_dh_M	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.95
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.33 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.33 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.33 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	88.57 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	62.86 %
Unclassified	root	N/A	6.67 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	49.52 %
Unclassified	root	N/A	6.67 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.90 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.95 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	49.52 %
Unclassified	root	N/A	6.67 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.90 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.95 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	49.52 %
Unclassified	root	N/A	6.67 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	1.90 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.95 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	49.52 %
Unclassified	root	N/A	6.67 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.90 %
pseudomallei group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group	0.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035918004\|FACENC_F56XM5W01DDNGS	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101743438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3520	Open in IMG/M
3300000955\|JGI1027J12803_103378203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	630	Open in IMG/M
3300001661\|JGI12053J15887_10028975	All Organisms → cellular organisms → Bacteria	3110	Open in IMG/M
3300002245\|JGIcombinedJ26739_100814363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	814	Open in IMG/M
3300004081\|Ga0063454_101228353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	622	Open in IMG/M
3300004081\|Ga0063454_101233447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300005167\|Ga0066672_10236096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1174	Open in IMG/M
3300005171\|Ga0066677_10061698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1904	Open in IMG/M
3300005171\|Ga0066677_10142783	All Organisms → cellular organisms → Bacteria → Proteobacteria	1305	Open in IMG/M
3300005175\|Ga0066673_10189729	All Organisms → cellular organisms → Bacteria → Proteobacteria	1167	Open in IMG/M
3300005175\|Ga0066673_10735166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300005184\|Ga0066671_10314765	All Organisms → cellular organisms → Bacteria → Proteobacteria	985	Open in IMG/M
3300005187\|Ga0066675_10201971	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300005332\|Ga0066388_101631655	All Organisms → cellular organisms → Bacteria → Proteobacteria	1137	Open in IMG/M
3300005344\|Ga0070661_101303510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	609	Open in IMG/M
3300005355\|Ga0070671_101996731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300005434\|Ga0070709_10195479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1429	Open in IMG/M
3300005434\|Ga0070709_10621943	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300005435\|Ga0070714_100179354	All Organisms → cellular organisms → Bacteria	1926	Open in IMG/M
3300005445\|Ga0070708_101736901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	580	Open in IMG/M
3300005451\|Ga0066681_10794057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group	572	Open in IMG/M
3300005467\|Ga0070706_100156062	All Organisms → cellular organisms → Bacteria → Proteobacteria	2130	Open in IMG/M
3300005471\|Ga0070698_100233961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1770	Open in IMG/M
3300005536\|Ga0070697_100067763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2920	Open in IMG/M
3300005560\|Ga0066670_10202028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1193	Open in IMG/M
3300005561\|Ga0066699_10379264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1011	Open in IMG/M
3300005575\|Ga0066702_10089034	All Organisms → cellular organisms → Bacteria	1741	Open in IMG/M
3300005575\|Ga0066702_10979988	Not Available	506	Open in IMG/M
3300005614\|Ga0068856_100227359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1881	Open in IMG/M
3300005764\|Ga0066903_100277278	All Organisms → cellular organisms → Bacteria → Proteobacteria	2624	Open in IMG/M
3300005764\|Ga0066903_100870109	All Organisms → cellular organisms → Bacteria → Proteobacteria	1625	Open in IMG/M
3300005764\|Ga0066903_105313192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	681	Open in IMG/M
3300006028\|Ga0070717_10196812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1763	Open in IMG/M
3300006028\|Ga0070717_10740118	All Organisms → cellular organisms → Bacteria → Proteobacteria	894	Open in IMG/M
3300006032\|Ga0066696_10765134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300006034\|Ga0066656_11069876	Not Available	518	Open in IMG/M
3300006163\|Ga0070715_10149387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1143	Open in IMG/M
3300006175\|Ga0070712_100413983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1116	Open in IMG/M
3300006175\|Ga0070712_100905151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	761	Open in IMG/M
3300006800\|Ga0066660_11127310	All Organisms → cellular organisms → Bacteria → Proteobacteria	620	Open in IMG/M
3300006893\|Ga0073928_10000091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	203759	Open in IMG/M
3300006904\|Ga0075424_102813652	All Organisms → cellular organisms → Bacteria → Proteobacteria	507	Open in IMG/M
3300009137\|Ga0066709_101185821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1124	Open in IMG/M
3300009137\|Ga0066709_102658195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300009143\|Ga0099792_10193324	Not Available	1152	Open in IMG/M
3300009792\|Ga0126374_10517441	All Organisms → cellular organisms → Bacteria → Proteobacteria	864	Open in IMG/M
3300010044\|Ga0126310_10316267	All Organisms → cellular organisms → Bacteria → Proteobacteria	1081	Open in IMG/M
3300010321\|Ga0134067_10217676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300010358\|Ga0126370_10203815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1497	Open in IMG/M
3300010360\|Ga0126372_10428714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1217	Open in IMG/M
3300010373\|Ga0134128_12109314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300010396\|Ga0134126_12674448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300012198\|Ga0137364_10176357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1557	Open in IMG/M
3300012198\|Ga0137364_10289118	All Organisms → cellular organisms → Bacteria → Proteobacteria	1215	Open in IMG/M
3300012203\|Ga0137399_10502345	Not Available	1017	Open in IMG/M
3300012212\|Ga0150985_123171511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	667	Open in IMG/M
3300012922\|Ga0137394_10779444	All Organisms → cellular organisms → Bacteria → Proteobacteria	802	Open in IMG/M
3300012924\|Ga0137413_10098210	All Organisms → cellular organisms → Bacteria → Proteobacteria	1820	Open in IMG/M
3300012927\|Ga0137416_10052880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2859	Open in IMG/M
3300012960\|Ga0164301_11131815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	624	Open in IMG/M
3300012977\|Ga0134087_10679566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300013100\|Ga0157373_11358119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539	Open in IMG/M
3300014157\|Ga0134078_10518017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300014497\|Ga0182008_10042577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2262	Open in IMG/M
3300015242\|Ga0137412_10087327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2537	Open in IMG/M
3300015371\|Ga0132258_10072397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7998	Open in IMG/M
3300015374\|Ga0132255_106284832	Not Available	503	Open in IMG/M
3300018433\|Ga0066667_10296841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1254	Open in IMG/M
3300018433\|Ga0066667_11777901	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300018468\|Ga0066662_11816642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300018468\|Ga0066662_12516899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300018482\|Ga0066669_10311613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1284	Open in IMG/M
3300018482\|Ga0066669_10417663	All Organisms → cellular organisms → Bacteria → Proteobacteria	1142	Open in IMG/M
3300019888\|Ga0193751_1035538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2282	Open in IMG/M
3300020199\|Ga0179592_10153214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1054	Open in IMG/M
3300021170\|Ga0210400_10002300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17931	Open in IMG/M
3300021358\|Ga0213873_10028594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1368	Open in IMG/M
3300021362\|Ga0213882_10089843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1239	Open in IMG/M
3300021445\|Ga0182009_10056026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1684	Open in IMG/M
3300021560\|Ga0126371_10435941	All Organisms → cellular organisms → Bacteria → Proteobacteria	1455	Open in IMG/M
3300022557\|Ga0212123_10000201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	204686	Open in IMG/M
3300022756\|Ga0222622_11452509	Not Available	505	Open in IMG/M
3300024330\|Ga0137417_1420119	Not Available	1807	Open in IMG/M
3300025898\|Ga0207692_10185568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1214	Open in IMG/M
3300025910\|Ga0207684_10128222	All Organisms → cellular organisms → Bacteria → Proteobacteria	2177	Open in IMG/M
3300025915\|Ga0207693_11052161	All Organisms → cellular organisms → Bacteria → Proteobacteria	620	Open in IMG/M
3300025922\|Ga0207646_10016233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6992	Open in IMG/M
3300026306\|Ga0209468_1098921	All Organisms → cellular organisms → Bacteria → Proteobacteria	941	Open in IMG/M
3300026312\|Ga0209153_1083857	All Organisms → cellular organisms → Bacteria → Proteobacteria	1177	Open in IMG/M
3300026316\|Ga0209155_1152139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	777	Open in IMG/M
3300026527\|Ga0209059_1079148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1395	Open in IMG/M
3300026542\|Ga0209805_1303860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300026547\|Ga0209156_10035381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2784	Open in IMG/M
3300026550\|Ga0209474_10615912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300026552\|Ga0209577_10617170	All Organisms → cellular organisms → Bacteria → Proteobacteria	641	Open in IMG/M
3300027663\|Ga0208990_1049274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1270	Open in IMG/M
3300027669\|Ga0208981_1047195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1099	Open in IMG/M
3300028047\|Ga0209526_10631974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	682	Open in IMG/M
3300028536\|Ga0137415_10126680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2398	Open in IMG/M
3300031754\|Ga0307475_10142838	All Organisms → cellular organisms → Bacteria → Proteobacteria	1897	Open in IMG/M
3300031962\|Ga0307479_10439739	All Organisms → cellular organisms → Bacteria → Proteobacteria	1289	Open in IMG/M
3300031962\|Ga0307479_10851074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	886	Open in IMG/M
3300032180\|Ga0307471_102165670	All Organisms → cellular organisms → Bacteria → Proteobacteria	700	Open in IMG/M
3300033412\|Ga0310810_10304049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1711	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.48%
Host-Associated	Host-Associated	9.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.62%
Plants	Host-Associated → Plants	9.52%
Aquatic	Environmental → Aquatic	2.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.81%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.90%
Sediment	Environmental → Aquatic → Sediment	0.95%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.19%
Loam	Environmental → Terrestrial → Soil → Loam	30.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.86%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.95%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.95%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	26.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.57%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	6.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.86%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	19.05%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.29%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.62%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	6.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.86%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.95%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_7063550	2035918004	Soil	MERSDNTIRFLRMTAGQLRRLAERVPEITDELRAMAQQLEAEADELDSNSKP
INPhiseqgaiiFebDRAFT_1017434386	3300000364	Soil	MERPDNTIGFLRITAAQLRRLAERVPDIADELRAMAEQLEAEADDLSSNRKP*
JGI1027J12803_1033782032	3300000955	Soil	MERPDNTIGFLRITAAQLRRLAERVPDIADELRAMAEQLEAEADD
JGI12053J15887_100289755	3300001661	Forest Soil	MERSDSTIRFLRMAAGQLRRLAERIPEIADELHAMARQLEAEADDLASNSKP*
JGIcombinedJ26739_1008143632	3300002245	Forest Soil	MERSDNTIRFLRMTAGQLRRLAERVPEITDELRAMAQQLEAEADELDSNSEP*
Ga0063454_1012283532	3300004081	Soil	LIHVTPMERRGSTIGFLRITAGQLRRLAERVPEIADELRAMAQQLEAEADDLAANPKP*
Ga0063454_1012334472	3300004081	Soil	MERPDNTIRFLRMTAGQLRRLAERVPEIAEELRTMAQQLEAEADDLASSPKP*
Ga0066672_102360961	3300005167	Soil	VAPLDRLSNTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPE
Ga0066677_100616984	3300005171	Soil	VDRLTSTVRFLRMAASELRRLAERIPEVADELELMARQLEAEADDLTSEPEPSPTV*
Ga0066677_101427832	3300005171	Soil	MDRLSGTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPEPPPTA*
Ga0066673_101897292	3300005175	Soil	MERSDNTIRFLRMTAGQLRRLAERVPEIAEELRTMAQQLEAEADDLASNPKP*
Ga0066673_107351662	3300005175	Soil	MDRLSGTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPEPPSTV*
Ga0066671_103147652	3300005184	Soil	VAPLDRLSNTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPEPPPTV*
Ga0066675_102019712	3300005187	Soil	MDRLTNTGRFLRMAARELRQLAERVPEIADELRSMARQLESEADDLTSDPGTPPAA*
Ga0066388_1016316552	3300005332	Tropical Forest Soil	MDRLINTVRFLRMAASELRRLAERVPESADELQSMARQLDNEADEPTSRPGAPPAA*
Ga0070661_1013035101	3300005344	Corn Rhizosphere	MERLTNTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLRSDPDASPTV*
Ga0070671_1019967311	3300005355	Switchgrass Rhizosphere	MDRLTNTIRFLRMAASELRRLAERIPEIAEELQSMAGQLEAEADDLTSDPDASPTV*
Ga0070709_101954792	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MDRLTNTIRFLRMAASELRRLAERIPEIADELQSMAGQLEAEADDLRSDPDASPTV*
Ga0070709_106219432	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MDRLTNTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPDASPTV*
Ga0070714_1001793544	3300005435	Agricultural Soil	MERLTNTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPDASPTV*
Ga0070708_1017369012	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MERSDSTIGFLRITAAQLRRLAERVPDIVDELRAMAEQLEAEADDLASNRKP*
Ga0066681_107940571	3300005451	Soil	MERSDNTVRFLRMTAGQRRRLAERVPEIADELRTMAQQLEAEADDLASSRKP*
Ga0070706_1001560624	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MERSDSTIGFLRITAAQLRRLAERVPDIADELRAMAEQLEAEAEDLASNH*
Ga0070698_1002339611	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MERSDSTIGFLRTTAAQLRRLAERVPDIADELRAMAEQLEAEADDLASNH*
Ga0070697_1000677633	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MERSDSTIGFLRITAAQLRRLAERVPDIADELRAMAEQLEAEADDLASNH*
Ga0066670_102020283	3300005560	Soil	VDRLTNTVRFLRMAASELRRLAERIPEVADELQLMARQLDAEADELTSDSEPSPTV*
Ga0066699_103792642	3300005561	Soil	MDRLSNTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPEPPPTV*
Ga0066702_100890344	3300005575	Soil	MDRLSGTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPEPPPTM*
Ga0066702_109799881	3300005575	Soil	MERRDSTIAFLRITASQLRRVAERVPEIADELRAMAEQLEAEADDLASNSKP*
Ga0068856_1002273591	3300005614	Corn Rhizosphere	MDRLTNTIRFLRMAASELRRLAERIPEIAEELQSMA
Ga0066903_1002772781	3300005764	Tropical Forest Soil	MERIGNTTTFLRMAAHELRRLAERVPELGDELLSMAQQLETE
Ga0066903_1008701094	3300005764	Tropical Forest Soil	MQRVINTVRFLRVAASELRRLAERVPEIADELQSMARQLDTEADDLKSDTEAPPAA*
Ga0066903_1053131921	3300005764	Tropical Forest Soil	MDGFTNTVRFLRMAASQLRHLAERVPEIADELLSMARQLDAEADDLTADPGPPAVA*
Ga0070717_101968123	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MDRLTNTIRFLRMAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPDASPTV*
Ga0070717_107401182	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	SSPAPFFGSSMERSDNTIRFLRMTAGQLRRLAERVPEITDELRAMAQQLEAEADELDSNSKP*
Ga0066696_107651342	3300006032	Soil	MDRLSGTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDP
Ga0066656_110698762	3300006034	Soil	MERRDSTIGFLRITASQLRRLAERVPEIADELRAMAQQLETEADDLASNPKP*
Ga0070715_101493871	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MDRLTNTIRFLRMAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPNASPTV*
Ga0070712_1004139831	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MERSDNTIRFLQMTAGQLRRLAERVPEITDELRAMAQQLEAEADELDSNSKP
Ga0070712_1009051513	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MDRLTNTIRFLRMAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDP
Ga0066660_111273101	3300006800	Soil	MDRLDNTVKFLRMAASQLRRLADRVPEIADELRASARQLDAEADDLASNTEP*
Ga0073928_1000009173	3300006893	Iron-Sulfur Acid Spring	MERLDNTVVFLRMAASELRRLAERVPEIADELHSMARQLDSEADDLTSNPQS*
Ga0075424_1028136522	3300006904	Populus Rhizosphere	MDRLTNTIRFLRMAASELRQLAERIPEIADELQSMAGQLEAEADDLTSDPDASPTV*
Ga0066709_1011858212	3300009137	Grasslands Soil	MERTDNTVRFLRMTAGQLRRLAERVPEIADELRTMAQQLEAEADDLASSPKP*
Ga0066709_1026581952	3300009137	Grasslands Soil	MDRLSNTIRFLRLAASELRRLAERIPEVADELQSMARQLDAEADDLTSEPQPSPTV*
Ga0099792_101933242	3300009143	Vadose Zone Soil	MERSDSTIRFLRMAAGQLRRLAERIPEIADELHAMARQLEAAADDLVSNSKP*
Ga0126374_105174412	3300009792	Tropical Forest Soil	MQRVPNTVRFLRVAASELRRLAERVPEIADELQSMARQLDTEADDLKSDTEAPPAA*
Ga0126310_103162672	3300010044	Serpentine Soil	MERRDSTIGFLRITASQLRRLAERVPEIADELRSLAQQLDDEADDLAPDLSP*
Ga0134067_102176761	3300010321	Grasslands Soil	MDRLSGTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPEPPPTV*
Ga0126370_102038151	3300010358	Tropical Forest Soil	MQRVTNTVRFLRVAASELRRLAERVPEIGDELQSMARQLDTEADDLKSDTEAPPAA*
Ga0126372_104287144	3300010360	Tropical Forest Soil	MQRVTNTVRFLRVAASELRRLAERVPEIADELQSMARQLDTEADDLKSDTEAPPAA*
Ga0134128_121093141	3300010373	Terrestrial Soil	MERLTNTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPDA
Ga0134126_126744482	3300010396	Terrestrial Soil	MDRLTNTIRFLRMAASELRRLAERIPEIADELQSMAGQLEAE
Ga0137364_101763572	3300012198	Vadose Zone Soil	MERSDNTVRFLRMTAGQLRRLAERVPEIADELRTMAQQLEAEADDLASSRKP*
Ga0137364_102891181	3300012198	Vadose Zone Soil	LVDRLTSTVRFLRMAASELRRLAERIPEVADELELMARQLDAEADDLTSEPEPSPAV*
Ga0137399_105023452	3300012203	Vadose Zone Soil	MERSDSTIRFLRMAAGQLRRLAERIPEIADELHAMARQLEAEADDLVSNSKP*
Ga0150985_1231715112	3300012212	Avena Fatua Rhizosphere	MERSDNTIRFLRMTAGQLRRLAERVPEIADELRSMAQQLEAEADDLASNPKP*
Ga0137394_107794442	3300012922	Vadose Zone Soil	MERSDNTVRFLRMTAGQLRRLAERVPEIADELRTMAQQLEAEADDLASNPKPQTREPER*
Ga0137413_100982101	3300012924	Vadose Zone Soil	DSTIRFLRMAAGQLRRLAERIPEIADELHAMARQLEAAADDLASNSKP*
Ga0137416_100528804	3300012927	Vadose Zone Soil	MERPDSTIRFLRMAAGQLRRLAERIPEIADELHAMARQLEAEADDLVSNSKP*
Ga0164301_111318151	3300012960	Soil	MDRLTNTVRFLRMAASELRRLAERIPEVADELELMARQLDAEADDLTPDTEPSPTV*
Ga0134087_106795661	3300012977	Grasslands Soil	MDRLSGTIRFLRLAASELRRLAERIPEIADELQSMAGQLEA
Ga0157373_113581192	3300013100	Corn Rhizosphere	MDRLTNTIRFLRMAASELRRLAERIPEIADELQSMAGQL
Ga0134078_105180172	3300014157	Grasslands Soil	MERRDSTIGFLRITASQLHRLAERIPEIADELHAMAQQLEAEADDLASDS
Ga0182008_100425774	3300014497	Rhizosphere	MDRLTNTIRFLRMAASELRQLAERIPEIADELQSMAGQLEAEADDLRSDPDASPTV*
Ga0137412_100873274	3300015242	Vadose Zone Soil	MERSDSTILFLRMAAGQLRRLAERIPEIADELHAMARQLEAAADDLASNSKP*
Ga0132258_100723973	3300015371	Arabidopsis Rhizosphere	MERLDSTIGFLRITASQLRRLAERVPEAADELRAMAQQLEAEAEDLAPNPKS*
Ga0132255_1062848321	3300015374	Arabidopsis Rhizosphere	MERLDSTIGFLRITASQLRRLAERVPEAADELRAMAQELEAEAEDLAPNPKS*
Ga0066667_102968414	3300018433	Grasslands Soil	MERSDNTIRFLRMTAGQLRRLAERVPEIAEELRTMAQQLEAEADDLAS
Ga0066667_117779011	3300018433	Grasslands Soil	NTVRFLRMAASELRRLAERIPEVADELQLMARQLDAEADELTSDSEPSPTV
Ga0066662_118166422	3300018468	Grasslands Soil	MERRDNTIGFLRITASQLRRLAERVPEIADELRAMAQQLEAEADDLASNPKP
Ga0066662_125168992	3300018468	Grasslands Soil	MDRLSGTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPEPPPTA
Ga0066669_103116132	3300018482	Grasslands Soil	MDRLSGTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPEPPPTV
Ga0066669_104176632	3300018482	Grasslands Soil	MERSDNTIRFLRMTAGQLRRLAERVPEIAEELRTMAQQLEAEADDLASNPKP
Ga0193751_10355384	3300019888	Soil	MERHDNTVRFLRLAAAELRRLAERVPEIADELQSMARQLETEADELAANPKP
Ga0179592_101532141	3300020199	Vadose Zone Soil	MERSDSTIRFLRMAAGQLRRLAERIPEIADELHAMARQLEAEADDLASNSKP
Ga0210400_1000230010	3300021170	Soil	MERSDNTIRFLRMTAGQLRRLAERVPEIADELRAMAQQLEAEADELDSNSKP
Ga0213873_100285942	3300021358	Rhizosphere	MKQWESTRRFLRLAANELRRLAEWAPEIADELQAMARQLDSAADAWPSKPNS
Ga0213882_100898432	3300021362	Exposed Rock	MKQWESTRRFLRLAANELRRLAEWAPEIADELQAMARQLDSEADAWPSKPNS
Ga0182009_100560261	3300021445	Soil	NTIRFLRMAASELRQLAERIPEIADELQSMAGQLEAEADDLTSDPDASPTV
Ga0126371_104359413	3300021560	Tropical Forest Soil	MQRVTNTVRFLRVAASELRRLAERVPEIADELQSMARQLDTEADDLKSDTEAPPAA
Ga0212123_1000020174	3300022557	Iron-Sulfur Acid Spring	MERLDNTVVFLRMAASELRRLAERVPEIADELHSMARQLDSEADDLTSNPQS
Ga0222622_114525091	3300022756	Groundwater Sediment	MDRRDNTVGFLRITASQLRRLAERVPEIADELRAMAQQLEAEADELASNPKP
Ga0137417_14201193	3300024330	Vadose Zone Soil	MERSDSTIRFLRMAAGQLRRLAERIPEIADELHAMARQLEAAADDLVSNSKP
Ga0207692_101855682	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MDRLTNTIRFLRMAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPDASPTV
Ga0207684_101282222	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MERSDSTIGFLRITAAQLRRLAERVPDIADELRAMAEQLEAEAEDLASNH
Ga0207693_110521612	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LRMTAAQLRRLADRVPQIADELRAMAQQIEAEADDLDSNSKP
Ga0207646_100162337	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MERSDSTIGFLRITAAQLRRLAERVPDIVDELRAMAEQLEAEADDVVSNR
Ga0209468_10989212	3300026306	Soil	RLVDRLTSTVRFLRMAASELRRLAERIPEVADELELMARQLDAEADDLTSEPEPSPTV
Ga0209153_10838572	3300026312	Soil	LDRLSNTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPEPPPTV
Ga0209155_11521393	3300026316	Soil	MERSDNTIRFLRMTAGQLRRLADRVPEIADELRATARQLEAEADDLASNPNP
Ga0209059_10791482	3300026527	Soil	VAPLDRLSNTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPEPPPTM
Ga0209805_13038601	3300026542	Soil	MDRLSNTIRFLRLAASELRRLAERIPEIADELQSMAGQ
Ga0209156_100353814	3300026547	Soil	KRLDNTVKFLRMAASQLRRLADRVPEIADELRATARQLEAEADDLASNPNP
Ga0209474_106159121	3300026550	Soil	MDRLTNTGRFLRMAARELRQLAERVPEIADELRSMARQLESEADDLTSDPGTPPAA
Ga0209577_106171701	3300026552	Soil	TPATRSPERRRVAPLDRLSNTIRFLRLAASELRRLAERIPEIADELQSMAGQLEAEADDLTSDPEPPPTA
Ga0208990_10492741	3300027663	Forest Soil	PHCLGLGRCSSTAPFFGSPMERPDSTIRFLRMAAGQLRRLAERIPEIADELHAMARQLEAAADDLVSNSKP
Ga0208981_10471951	3300027669	Forest Soil	MERSDSTIRFLRMAAGQLRRLAERIPEIADELHAMARQLEAAADD
Ga0209526_106319742	3300028047	Forest Soil	MERPDNTIRFLRMTAGQLRRLAERVPEIADELRDMASQLETEADDLVSNSKP
Ga0137415_101266802	3300028536	Vadose Zone Soil	MERPDSTIRFLRMAAGQLRRLAERIPEIADELHAMARQLEAEADDLVSNSKP
Ga0307475_101428382	3300031754	Hardwood Forest Soil	MERPANTVRFLRQAAAELRRLAQRVPEIADELQSMARQLESEADDLAANPNP
Ga0307479_104397393	3300031962	Hardwood Forest Soil	RPNAPMERPANTVRFLRQAAAELRRLAQRVPEIADELQSMARQLESEADDLAANPKPKP
Ga0307479_108510741	3300031962	Hardwood Forest Soil	MEGADNTVRFLRQAAAELRRLAQRVPEIADELQSMARQLESEADDLAANPNPKP
Ga0307471_1021656701	3300032180	Hardwood Forest Soil	GGLTRPNAPMERPANTVRFLRQAAAELRRLAQRVPEIADELQSMARQLESEADDLAANPN
Ga0310810_103040492	3300033412	Soil	MDRLTNTIRFLRMAASELRQLAERIPEIADELQSMAGQLEAEADDLRSDPDASPTV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096135

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences