Basic Information | |
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Family ID | F096134 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 105 |
Average Sequence Length | 49 residues |
Representative Sequence | MLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER |
Number of Associated Samples | 96 |
Number of Associated Scaffolds | 105 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 34.29 % |
% of genes near scaffold ends (potentially truncated) | 55.24 % |
% of genes from short scaffolds (< 2000 bps) | 90.48 % |
Associated GOLD sequencing projects | 90 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (97.143 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (19.048 % of family members) |
Environment Ontology (ENVO) | Unclassified (28.571 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (48.571 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 88.00% β-sheet: 0.00% Coil/Unstructured: 12.00% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Watersheds Soil Soil Vadose Zone Soil Terrestrial Soil Grasslands Soil Soil Soil Grasslands Soil Grass Soil Soil Forest Soil Soil Hardwood Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Arabidopsis Rhizosphere Avena Fatua Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Populus Endosphere Populus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Attine Ant Fungus Gardens Simulated |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
GPIPI_00693090 | 2088090014 | Soil | MLTSKKYLQQAEECLKLANASSDVYVKDALTELASDFKAMAKDLEQRNEL |
cont_0276.00004400 | 2166559005 | Simulated | MLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKATAKDLEQRNER |
F47_05468480 | 2170459009 | Grass Soil | MLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLE |
JGI11643J11755_117578682 | 3300000787 | Soil | MLTSKKYLQQAEECLKLANASSDVYVKDALTELASDFKAMAKDLEQRNEL* |
JGIcombinedJ26739_1010340922 | 3300002245 | Forest Soil | MLTSKEYLQRAEQCSQLANASCDAYVKEALAELASEFKAMAKDLEQRNER* |
JGI25390J43892_100432561 | 3300002911 | Grasslands Soil | GEFYLLAFGAVMLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER* |
JGI25617J43924_100051161 | 3300002914 | Grasslands Soil | MLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLDQRNER* |
Ga0063356_1038178521 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER* |
Ga0062591_1022946742 | 3300004643 | Soil | KEYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH* |
Ga0066821_10112561 | 3300005147 | Soil | MLTSKEYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH* |
Ga0066823_100192962 | 3300005163 | Soil | MLTSKEYLQRAEECSQLANASSDVYVKKALTELACEFKATAKDLEQRNER* |
Ga0066690_110604771 | 3300005177 | Soil | AEECSQLANASSDVYVKKALTELACEFKATAKDLEQRNER* |
Ga0066678_101865941 | 3300005181 | Soil | MLTSKEYLQQAEDCSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER |
Ga0070668_1006620592 | 3300005347 | Switchgrass Rhizosphere | MLTSKKYLQQAEECLKLANASSDVYVKDALTELASDFKAMAKDLEQRNEH* |
Ga0070709_100942702 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQRERNA* |
Ga0070713_1003676154 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | QAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH* |
Ga0070710_100377467 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | AFGAVMLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQRERNA* |
Ga0070711_1008166111 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKKYLQQAEECLQLANASSDVYVKDALTELASDFKAMA |
Ga0070705_1003427682 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | KEYLQQAEECSQLANATSDVYVKEALTELASDFKAMAKDLEQRNER* |
Ga0070694_1000536984 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKEYLQQAEECSQLANATSDVYVKEALTELASDFKAMAKDLEQRNER* |
Ga0070707_1001304615 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER* |
Ga0070698_1008375533 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | GLMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRKER* |
Ga0070697_1016540032 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKD |
Ga0070696_1019394861 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKEYLQQAEECSQLANATSDVYVKEALTELASDFKAMAKDLEQRNE |
Ga0066704_107288402 | 3300005557 | Soil | MLTSKAYLQQAEECLQLANASSDVYVKEALTELASDFKAMAEDLEQRNGR* |
Ga0066706_102923001 | 3300005598 | Soil | TSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER* |
Ga0070717_107899981 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | AFGGLMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRKER* |
Ga0075368_105090311 | 3300006042 | Populus Endosphere | MLTSKEYVRQAEDCLQLANASSDVFVREALTELASDFKSIAKALEQRERNA* |
Ga0075432_105509191 | 3300006058 | Populus Rhizosphere | MLTSKEYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNER* |
Ga0070715_101594363 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKKYLQQAEECLKLANASSDVYVKDALTELASDFKAMA |
Ga0075018_102452711 | 3300006172 | Watersheds | AFGGLMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER* |
Ga0070716_1002038631 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKEYLQQAEECSQLANASSDVYVKKALTELASEFKATAKDVERATNADEE* |
Ga0070712_1002959282 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKKYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH* |
Ga0074064_117538372 | 3300006603 | Soil | MLTSKEYLQQAEECFQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH* |
Ga0075421_1008109482 | 3300006845 | Populus Rhizosphere | MLTSKEYLQQAEDCSQLANAPSDVYVKEALTELASDFKAMAKDLEQRNER* |
Ga0075433_116547101 | 3300006852 | Populus Rhizosphere | TSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER* |
Ga0075425_1013377741 | 3300006854 | Populus Rhizosphere | MLTSKKYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNE |
Ga0075425_1022373542 | 3300006854 | Populus Rhizosphere | MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFK |
Ga0075434_1023268491 | 3300006871 | Populus Rhizosphere | MLTSKEYLQRAEECSQLANASGDVYVKKALTELACEFKATANNER* |
Ga0075424_1013052991 | 3300006904 | Populus Rhizosphere | FGAVMLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQRERNA* |
Ga0075435_1013839072 | 3300007076 | Populus Rhizosphere | MLTSKEYLQRAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER* |
Ga0075435_1019425021 | 3300007076 | Populus Rhizosphere | MLTSKKYLQQAEECLKLANASSDVYVKDALTELASDFKAMAKDLEQRNEP* |
Ga0099829_103067054 | 3300009038 | Vadose Zone Soil | MLTSKEYLQQAEECLQLANASSDVYVKEALTELASDFKAMAEDLEQRNGR* |
Ga0105247_118475632 | 3300009101 | Switchgrass Rhizosphere | MLTSKEYLQRAEECSQLANASSDVYVKEALTELASDF |
Ga0066709_1031474052 | 3300009137 | Grasslands Soil | MLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMA |
Ga0111538_120417541 | 3300009156 | Populus Rhizosphere | AFGAVMLTSKKYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH* |
Ga0075423_108492902 | 3300009162 | Populus Rhizosphere | MLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLERRNER* |
Ga0105249_107016183 | 3300009553 | Switchgrass Rhizosphere | SKEYLQQAEECLQLANASSDVYVKEALTELASDFEAMAKELEQRNER* |
Ga0127503_100736393 | 3300010154 | Soil | LTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLDQRNER* |
Ga0134088_100822801 | 3300010304 | Grasslands Soil | AEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER* |
Ga0134125_128378142 | 3300010371 | Terrestrial Soil | GAVMLTSKKYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH* |
Ga0134123_129167921 | 3300010403 | Terrestrial Soil | MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKS |
Ga0150983_101518311 | 3300011120 | Forest Soil | GAVMLTSKEYVRQAEDCLQLANASSDVFVREALTELASDFKSIAKALEQRERNA* |
Ga0150983_135107503 | 3300011120 | Forest Soil | GLMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER* |
Ga0137392_109515912 | 3300011269 | Vadose Zone Soil | MLTSKEYLQQAEDCSRLANASSDVYVKEALTELASNFKAMAKDLARNER* |
Ga0153974_10964342 | 3300012180 | Attine Ant Fungus Gardens | FLPAFGGLMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER* |
Ga0137364_106207862 | 3300012198 | Vadose Zone Soil | MLTSKEYLQQAEDCSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER* |
Ga0137380_108371691 | 3300012206 | Vadose Zone Soil | MLRSKEYLQQAEECLQLATASSDVYVKEALTELAS |
Ga0150985_1161991131 | 3300012212 | Avena Fatua Rhizosphere | KEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQRERNA* |
Ga0137371_110074621 | 3300012356 | Vadose Zone Soil | LAFGAVMLTSKEYLQQAEDCSQLANAPSDVYVKEALTELASDFKAMAKDLEQRNER* |
Ga0137360_102381421 | 3300012361 | Vadose Zone Soil | RERSNYSANCAHERFGAVMLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLDQRNER* |
Ga0137398_101924222 | 3300012683 | Vadose Zone Soil | MLTSKEYLQQAEDCSRLANASSDVYVKEALTELASDFKAMAKDLDQRNER* |
Ga0137359_101745543 | 3300012923 | Vadose Zone Soil | LGELYLLAFGAVMLTSKEYLQQAEDCSQLASASSDVYVKEALTELASDFKAMAKELEQRNER* |
Ga0137359_111850711 | 3300012923 | Vadose Zone Soil | ANCAHERFGAVMLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLEQRNER* |
Ga0137413_117022171 | 3300012924 | Vadose Zone Soil | MLTSKEYLQQAEDCSQLASASSDVYVKEALTELASDFKAMAKELEQRNER* |
Ga0162651_1000275352 | 3300012938 | Soil | MLTSKAYLQQAEECLQLANASSDVYVKEALTELASDFKAMAENLDQRNER* |
Ga0164303_102686121 | 3300012957 | Soil | MLTSKEYLQRAEECSQLANASSDVYVKDALTELAS |
Ga0164301_103694461 | 3300012960 | Soil | MLTSKEYLQQAEECLQLANASSDVYVKDALTELSSDFKAMAKDLEQRNEH* |
Ga0164308_117029732 | 3300012985 | Soil | LMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER* |
Ga0164304_117730092 | 3300012986 | Soil | MLTSKEYLQRAEECSQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH* |
Ga0164306_107314281 | 3300012988 | Soil | KYLQQAEECLKLANASSDVYVKDALTELASDFKAMAKDLEQRNEP* |
Ga0132255_1050656111 | 3300015374 | Arabidopsis Rhizosphere | MLTSKEYVRQAEDCLQLANASTDVYVREALTELASDFKSIAK |
Ga0182041_106041262 | 3300016294 | Soil | MLTSKEYLQRAEECSQLANASSDVYVKKALTELACEF |
Ga0066662_120953681 | 3300018468 | Grasslands Soil | MLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER |
Ga0066662_124214091 | 3300018468 | Grasslands Soil | MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQRERNA |
Ga0066669_108046062 | 3300018482 | Grasslands Soil | MLTSKEYLEQAEDCSQLASASSDVYVKEALTELASDFKAMAKDLEQRNER |
Ga0210407_104268892 | 3300020579 | Soil | MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQREHHGWMENATVGR |
Ga0210387_100833715 | 3300021405 | Soil | MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQREHHGWMENA |
Ga0210410_101843884 | 3300021479 | Soil | MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQREH |
Ga0207663_110944242 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKKYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEP |
Ga0207646_103111541 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKEYLQQAEECSQLANATSDVYVKEALTELASDFKAMAKDLEQRNER |
Ga0207646_103440853 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKEYLQRAEECSQLANASSDVYVKKALTELACEFKAT |
Ga0207700_106103291 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKEYVRQAEDCLQLANASSDVYVREALTELAS |
Ga0207700_117878161 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | ELYSRAFSAVILTSKEYLQQAEECLQLANASSDVYVKEALTELASDFEAMAKELEQRNER |
Ga0207665_114224961 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | MLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNE |
Ga0207675_1022472511 | 3300026118 | Switchgrass Rhizosphere | LAFGAVMLTSKEYVRQAEDCLQLANASSDVFVREALTELASDFKSIAKALEQRERNA |
Ga0209240_10077992 | 3300026304 | Grasslands Soil | MLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLDQRNER |
Ga0209239_10746294 | 3300026310 | Grasslands Soil | GAVMLTSKEYLQQAEECSQLANASSDVYVKEALTELASDFKAMAKDLEQRNER |
Ga0257160_10477152 | 3300026489 | Soil | YLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH |
Ga0257159_10309992 | 3300026494 | Soil | MLTSKAYIQQAEECLQLANASGDVYVKEALTELASDFKAMAKDLDQRNER |
Ga0257159_10393222 | 3300026494 | Soil | MLTSKEYLQRAEECSQLANASSDVYVKDALTELASDFKAMAKDLEQRNEH |
Ga0179587_103536211 | 3300026557 | Vadose Zone Soil | MLTSKAYIQQAEECLQLANASSDVYVKDALTKLASDFKAMAKDLEQRNEH |
Ga0207983_10365442 | 3300027310 | Soil | VPSSAFGGLMLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRNER |
Ga0209526_100106834 | 3300028047 | Forest Soil | MLTSKEYLQRAEECSQLANASSDVYVKKALTELASEFKATAKDLEQRKER |
Ga0137415_101490825 | 3300028536 | Vadose Zone Soil | MLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAEDLEQRNGR |
Ga0307317_102611411 | 3300028720 | Soil | MLTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKAFEQRERNA |
Ga0222749_103456752 | 3300029636 | Soil | MLTSKEYLQRAEECSQLANASSDVYVKKALTELASEIKATAKDLEQRNER |
Ga0222749_104269651 | 3300029636 | Soil | MLTSKEYVRQAEDCLQLAKASSDVYVREALTELASD |
Ga0308202_11544981 | 3300030902 | Soil | LTSKEYVRQAEDCLQLANASSDVYVREALTELASDFKSIAKALEQRERNA |
Ga0170824_1148774222 | 3300031231 | Forest Soil | ERFGAVMLTSKAYIQQAEECLQLANASSDVYVKEALTELASDFKAMAKDLDQRNER |
Ga0310915_100169676 | 3300031573 | Soil | MLTSKEYLQRAEECSQLANASSDVYVKKALTELACEFKATAKDLEQRNER |
Ga0307469_118130272 | 3300031720 | Hardwood Forest Soil | MLTSKAYLQQAEECLQLANASSDVYVKKALTELACEFKATAKDLEQRNER |
Ga0307473_107357082 | 3300031820 | Hardwood Forest Soil | MLTSKEYLQQAEECLQLANASSDVYVKDALTELASDFKAMAKDLDQRNER |
Ga0307471_1037361001 | 3300032180 | Hardwood Forest Soil | MLTSKAYLQQAEECLQFANASSDVYVKEALTELASEWPWTWKQR |
Ga0370546_081919_257_409 | 3300034681 | Soil | MLTSKEYLQQAEDCSQLANASSDVYVKEALTELASNFKAIAKDLEQRNER |
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