Metagenome Family F096130

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096130
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	64 residues
Representative Sequence	MGGRDDDLPFRIELWDEADRHIEEVIALASDFASACGAYDEAVKRRPGKLITLRQKARVIKKSR
Number of Associated Samples	83
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.71 %
% of genes near scaffold ends (potentially truncated)	35.24 %
% of genes from short scaffolds (< 2000 bps)	91.43 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (68.571 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil (8.571 % of family members)
Environment Ontology (ENVO)	Unclassified (35.238 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.48% β-sheet: 27.17% Coil/Unstructured: 54.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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SCOP family	SCOP domain	Representative PDB	TM-score
d.73.1.1: RuBisCO, small subunit	d1svdm1	1svd	0.71464
d.73.1.1: RuBisCO, small subunit	d4f0hb_	4f0h	0.71211
d.73.1.1: RuBisCO, small subunit	d1wdds_	1wdd	0.70564
d.142.2.0: automated matches	d7k72a_	7k72	0.63316
d.142.2.2: Adenylation domain of NAD+-dependent DNA ligase	d3jsla_	3jsl	0.62426

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF03729	DUF308	1.90
PF04226	Transgly_assoc	1.90
PF02586	SRAP	0.95
PF08239	SH3_3	0.95
PF05108	T7SS_ESX1_EccB	0.95
PF02735	Ku	0.95
PF06319	MmcB-like	0.95
PF01058	Oxidored_q6	0.95
PF12647	RNHCP	0.95
PF01914	MarC	0.95
PF09361	Phasin_2	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	1.90
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	1.90
COG0377	NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase	Energy production and conversion [C]	0.95
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.95
COG1740	Ni,Fe-hydrogenase I small subunit	Energy production and conversion [C]	0.95
COG1941	Coenzyme F420-reducing hydrogenase, gamma subunit	Energy production and conversion [C]	0.95
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	0.95
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.95
COG3260	Ni,Fe-hydrogenase III small subunit	Energy production and conversion [C]	0.95
COG5321	Uncharacterized conserved protein	Function unknown [S]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
All Organisms	root	All Organisms	31.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
cellular organisms	root	All Organisms → cellular organisms	31.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.81 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.81 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.29 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	2.86 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.95 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	6.67 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	2.86 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.90 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.67 %
Caulobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	2.86 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.90 %
Chelativorans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.67 %
unclassified Caulobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter	2.86 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	1.90 %
unclassified Chelativorans	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.57 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.67 %
Caulobacter sp. OV484	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. OV484	2.86 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	1.90 %
Chelativorans sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp.	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16775781	Not Available	1108	Open in IMG/M
2228664022\|INPgaii200_c1169890	Not Available	632	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13636378	Not Available	751	Open in IMG/M
3300000787\|JGI11643J11755_11829637	Not Available	605	Open in IMG/M
3300000956\|JGI10216J12902_105175403	Not Available	623	Open in IMG/M
3300000956\|JGI10216J12902_118286714	Not Available	523	Open in IMG/M
3300003319\|soilL2_10170105	Not Available	1515	Open in IMG/M
3300003324\|soilH2_10143695	Not Available	1655	Open in IMG/M
3300003994\|Ga0055435_10060814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	933	Open in IMG/M
3300004022\|Ga0055432_10213710	Not Available	558	Open in IMG/M
3300004070\|Ga0055488_10060116	Not Available	848	Open in IMG/M
3300004145\|Ga0055489_10254045	Not Available	558	Open in IMG/M
3300004463\|Ga0063356_101312274	Not Available	1059	Open in IMG/M
3300004463\|Ga0063356_102746757	Not Available	758	Open in IMG/M
3300004479\|Ga0062595_101616961	Not Available	605	Open in IMG/M
3300004643\|Ga0062591_102084872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. OV484	587	Open in IMG/M
3300005045\|Ga0071328_102434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2041	Open in IMG/M
3300005045\|Ga0071328_150819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3411	Open in IMG/M
3300005045\|Ga0071328_174495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2084	Open in IMG/M
3300005093\|Ga0062594_100986742	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300005294\|Ga0065705_10213268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1358	Open in IMG/M
3300005332\|Ga0066388_100714040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1607	Open in IMG/M
3300005332\|Ga0066388_102475998	Not Available	943	Open in IMG/M
3300005332\|Ga0066388_102783078	Not Available	893	Open in IMG/M
3300005332\|Ga0066388_106440993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	592	Open in IMG/M
3300005334\|Ga0068869_101663979	Not Available	569	Open in IMG/M
3300005337\|Ga0070682_100338776	Not Available	1117	Open in IMG/M
3300005337\|Ga0070682_101124301	Not Available	659	Open in IMG/M
3300005337\|Ga0070682_102015631	Not Available	508	Open in IMG/M
3300005365\|Ga0070688_100633704	Not Available	821	Open in IMG/M
3300005441\|Ga0070700_101478892	Not Available	577	Open in IMG/M
3300005459\|Ga0068867_101573348	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300005536\|Ga0070697_101852984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. OV484	540	Open in IMG/M
3300005547\|Ga0070693_101297207	Not Available	563	Open in IMG/M
3300005616\|Ga0068852_100113940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	2463	Open in IMG/M
3300005616\|Ga0068852_101169455	Not Available	790	Open in IMG/M
3300005618\|Ga0068864_102515615	Not Available	521	Open in IMG/M
3300005764\|Ga0066903_102312349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1038	Open in IMG/M
3300005843\|Ga0068860_100302677	Not Available	1567	Open in IMG/M
3300005844\|Ga0068862_102685729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp.	510	Open in IMG/M
3300006046\|Ga0066652_101061546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	768	Open in IMG/M
3300006163\|Ga0070715_10251670	Not Available	924	Open in IMG/M
3300006237\|Ga0097621_100721751	Not Available	919	Open in IMG/M
3300006358\|Ga0068871_100396017	Not Available	1229	Open in IMG/M
3300006854\|Ga0075425_101762108	Not Available	696	Open in IMG/M
3300009053\|Ga0105095_10605637	Not Available	610	Open in IMG/M
3300009101\|Ga0105247_11300855	Not Available	584	Open in IMG/M
3300009143\|Ga0099792_11029989	Not Available	551	Open in IMG/M
3300009153\|Ga0105094_10284090	Not Available	952	Open in IMG/M
3300009156\|Ga0111538_10187354	All Organisms → cellular organisms → Bacteria	2627	Open in IMG/M
3300009157\|Ga0105092_10485663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	707	Open in IMG/M
3300009545\|Ga0105237_11695987	Not Available	639	Open in IMG/M
3300010366\|Ga0126379_11453833	Not Available	791	Open in IMG/M
3300010371\|Ga0134125_11586957	Not Available	712	Open in IMG/M
3300010371\|Ga0134125_12196437	Not Available	600	Open in IMG/M
3300010373\|Ga0134128_12032147	Not Available	633	Open in IMG/M
3300010396\|Ga0134126_11051613	Not Available	910	Open in IMG/M
3300010396\|Ga0134126_11334573	Not Available	794	Open in IMG/M
3300010396\|Ga0134126_12138684	Not Available	611	Open in IMG/M
3300010396\|Ga0134126_12319495	Not Available	585	Open in IMG/M
3300010398\|Ga0126383_10028575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4390	Open in IMG/M
3300010401\|Ga0134121_11173669	Not Available	766	Open in IMG/M
3300010403\|Ga0134123_11576059	Not Available	704	Open in IMG/M
3300012469\|Ga0150984_122549311	Not Available	1272	Open in IMG/M
3300012915\|Ga0157302_10533950	Not Available	513	Open in IMG/M
3300012948\|Ga0126375_10614532	Not Available	832	Open in IMG/M
3300013296\|Ga0157374_10124688	All Organisms → cellular organisms → Bacteria	2489	Open in IMG/M
3300013297\|Ga0157378_12125242	Not Available	612	Open in IMG/M
3300013308\|Ga0157375_10868538	Not Available	1048	Open in IMG/M
3300013308\|Ga0157375_11294760	Not Available	857	Open in IMG/M
3300014325\|Ga0163163_10703130	Not Available	1074	Open in IMG/M
3300014325\|Ga0163163_11430247	Not Available	753	Open in IMG/M
3300014968\|Ga0157379_10525568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1099	Open in IMG/M
3300014968\|Ga0157379_10788991	Not Available	896	Open in IMG/M
3300015051\|Ga0137414_1261814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	2380	Open in IMG/M
3300015077\|Ga0173483_10039864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1752	Open in IMG/M
3300015371\|Ga0132258_12815114	Not Available	1211	Open in IMG/M
3300015372\|Ga0132256_100344507	Not Available	1583	Open in IMG/M
3300015374\|Ga0132255_100024500	Not Available	7508	Open in IMG/M
3300015374\|Ga0132255_100584037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1650	Open in IMG/M
3300015374\|Ga0132255_104533836	Not Available	589	Open in IMG/M
3300016422\|Ga0182039_10446430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1107	Open in IMG/M
3300018076\|Ga0184609_10197210	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300018422\|Ga0190265_12457282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	620	Open in IMG/M
3300018422\|Ga0190265_12780633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	585	Open in IMG/M
3300018422\|Ga0190265_13585184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. OV484	518	Open in IMG/M
3300018469\|Ga0190270_10736830	Not Available	983	Open in IMG/M
3300019356\|Ga0173481_10109963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1075	Open in IMG/M
3300025900\|Ga0207710_10190845	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300025906\|Ga0207699_11013206	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	614	Open in IMG/M
3300025934\|Ga0207686_11747340	Not Available	515	Open in IMG/M
3300025935\|Ga0207709_10648764	Not Available	840	Open in IMG/M
3300025940\|Ga0207691_10192421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1779	Open in IMG/M
3300025941\|Ga0207711_11541231	Not Available	608	Open in IMG/M
3300025945\|Ga0207679_11189926	Not Available	699	Open in IMG/M
3300025986\|Ga0207658_10963853	Not Available	778	Open in IMG/M
3300025986\|Ga0207658_11835362	Not Available	553	Open in IMG/M
3300027561\|Ga0209887_1057036	Not Available	831	Open in IMG/M
3300027722\|Ga0209819_10329574	Not Available	523	Open in IMG/M
3300027880\|Ga0209481_10735560	Not Available	513	Open in IMG/M
3300028379\|Ga0268266_11384676	Not Available	679	Open in IMG/M
3300028381\|Ga0268264_10894204	Not Available	891	Open in IMG/M
3300030619\|Ga0268386_10658304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	690	Open in IMG/M
3300031947\|Ga0310909_11136340	Not Available	634	Open in IMG/M
3300032076\|Ga0306924_11821860	Not Available	633	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.90%
Host-Associated	Host-Associated	38.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.33%
Plants	Host-Associated → Plants	38.10%
Aquatic	Environmental → Aquatic	8.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.33%
Freshwater	Environmental → Aquatic → Freshwater	3.81%
Marine	Environmental → Aquatic → Marine	3.81%
Roots	Host-Associated → Plants → Roots	3.81%
Sediment	Environmental → Aquatic → Sediment	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.29%
Loam	Environmental → Terrestrial → Soil → Loam	13.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.52%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.67%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.81%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.81%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%
Sand	Environmental → Terrestrial → Soil → Sand	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.76%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.81%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	3.81%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	8.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.76%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.81%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.86%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.86%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.90%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.90%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.95%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300004070	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01612640	2088090014	Soil	MADDDLPFRVELWDDKDRHIEEVIALAADYATAKSAYKEAVKRRPGKLITLRQKARVIQSRRKN
INPgaii200_11698901	2228664022	Soil	PFSDDDLPFRVELWDDKDSHIEEVIALASDYATAKSAYEEAVKRRPGRLITLRQKALVI
ICChiseqgaiiFebDRAFT_136363782	3300000363	Soil	MGCCGDDTLPFRVEVWDDKDRHIEELVALVADYSCAVGAYEQAVKRRPDKLITLRQQARVIKKSR*
JGI11643J11755_118296372	3300000787	Soil	AATPQNPFSDDDLPFRVELWDDKDSHIEEVIALASDYATAKSAYEEAVKRRPGRLITLRQKALVIQSTRRDCV*
JGI10216J12902_1051754031	3300000956	Soil	MARYADDLPFRVELWDDKDNHIEEVIALASDYGTARSSYEEAVKRRPGRLITLRQKARVIQSTRKN*
JGI10216J12902_1182867142	3300000956	Soil	MLHGWTRRRSPFSELWDDKDSHIEEVIALASDYATAKNAYEDAVKRRPSKLIMLRQKTRVIQKSR*
soilL2_101701054	3300003319	Sugarcane Root And Bulk Soil	MPADLPFRIEVWDDQDRYVEELIALVSDFTTAQRTYNEVVRRRPGKLITLRQKARVIKKESLTTQIS
soilH2_101436954	3300003324	Sugarcane Root And Bulk Soil	MGCCGDDNLPFRVEVWDDKDECIEELIALVADYSSALGAYEEALKRRPDKLITVRQQARVIKKSR*
Ga0055435_100608141	3300003994	Natural And Restored Wetlands	RDDPPFRIEPWDDSDARIEEVIALTADFASACGAYEEAVKRRPGKPITLRQKTRVIKKSR
Ga0055432_102137101	3300004022	Natural And Restored Wetlands	MHYGDKDDPPFRIEPWDDSDARIEEVIALTADFASACGAYEEAVKRRPGKPITLREKT
Ga0055488_100601161	3300004070	Natural And Restored Wetlands	MDTRDDPPFRIEPWDDSDARIEEVIALTADFASACGAYEEAVKRRPGKPITLRQKTRVIRRVDSPPLTSPG*
Ga0055489_102540452	3300004145	Natural And Restored Wetlands	PPFRIEPWDDSDARIEEVIALTADFASACGAYEEAVKRRPGKPITLREKTRVIEKRDSPPLTSAG*
Ga0063356_1013122741	3300004463	Arabidopsis Thaliana Rhizosphere	MAGQDDDLPFRIELWDDKDSHIEEVIALASDYATARGAFDEAVKRRPGKLITLRQKARVIQKSL*
Ga0063356_1027467572	3300004463	Arabidopsis Thaliana Rhizosphere	MADDDLPFRVELWDDKDRHIEEVIALAADYATAKSAYKEAVKRRPGKLITLRQKARVIQSRRKN*
Ga0062595_1016169612	3300004479	Soil	LPFRVELWDDKDSHIEEVIALASDYATAKSAYEEAVKRRPGRLITLRQKALVIQSTRRDCV*
Ga0062591_1020848721	3300004643	Soil	AGQDDDLPFRIELWDDKDSHIEEVIALASDYATARGAFDEAVKRRPGKLITLRQKARVIQKSL*
Ga0071328_1024342	3300005045	Permafrost	MIYRFGIELWDDGDKHVDEVIALASDFSTAQGAYDEAVKRRPGRLITLRQKARVIKKSR*
Ga0071328_1508196	3300005045	Permafrost	MSGDDELPFRIELWDDGDRCVEEVIALASDFSTASSAYEEAAKRRPGKLITLRQKARVIKKSR*
Ga0071328_1744953	3300005045	Permafrost	MAGRDDDLPFRIELWDDGDSRIEELIALAGDYATACGAFDEAVKRRPGKLITLRQKARVIKWSR*
Ga0062594_1009867422	3300005093	Soil	MSGRDDDFPYRVELWDDADRRIEEVIALASDYASACGAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0065705_102132684	3300005294	Switchgrass Rhizosphere	MADDGLPFRVELWDDKDRHIEEVIALAADYATAKSAYKEAVKRRPGKLITLRQKARVIQSRRKN*
Ga0066388_1007140404	3300005332	Tropical Forest Soil	MGCCGDDSLPFRVELWDDKDQHIEELVALVSDFSSALVTYEEAVKRRPGKLITLRQQARVIKKSR*
Ga0066388_1024759981	3300005332	Tropical Forest Soil	MGCCGDDDDLPFRVELWDDKDRHIDELIALVADYSSAVGAYEEAVRRRPGKLITLRQQARVIKKGR*
Ga0066388_1027830782	3300005332	Tropical Forest Soil	MDGQDDDLPFRVELWDDKDSHIEEVIALASDYSTARGAYEEAVRRRPGKLIALRQKSRVIQKSR*
Ga0066388_1064409932	3300005332	Tropical Forest Soil	MRENDLPFCVEVWDDKDTHIEEIIALTSDYWTAKSAYEEAVKRRPGRFITLRQKVRVIQSTRRN*
Ga0068869_1016639791	3300005334	Miscanthus Rhizosphere	FCSHKEIMGGRDDDLPFRIELWDEADRHIEEVIALASDFASACGAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0070682_1003387762	3300005337	Corn Rhizosphere	MSGGEQDLPFRIELWDDADRHIEEVIALASDFASACGAYDEAVKRRPGKLITLRQKARVIKRSR*
Ga0070682_1011243011	3300005337	Corn Rhizosphere	DLPFKIELWDDADRHIEEVIALGSDYASACGAYDEAVKRRPGELITLRQKARVIKKSR*
Ga0070682_1020156312	3300005337	Corn Rhizosphere	MGVPGADLPFRIELWDDADQRVEELIALVGDFATASSAYEEAVRRRPGKLITLRQKARVIKRSR*
Ga0070688_1006337041	3300005365	Switchgrass Rhizosphere	MGGRDDDLPFRIELWDEADRHIEEVIALASDFASACGAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0070700_1014788921	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	IELWYNADLHIEEVVALASDYASACGAYDEAVKRRPGKLVTLRQKARVIKKSR*
Ga0068867_1015733481	3300005459	Miscanthus Rhizosphere	MGNGEHDLPFKIELWDDADRHIEEVIALASDYASACGAYDEAVKRRPGKLVTLRQKARVIKKSR*
Ga0070697_1018529841	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAGQEDLPFRVELWDDTDSHIEEVIAPVSDYATARGAFEEAVKRRPGKLITFRQKARVIRKSR*
Ga0070693_1012972072	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MGGYDDNLPFRIELWDEADRHIEEVIALAPDFASACGAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0068852_1001139401	3300005616	Corn Rhizosphere	MAAHDDDLPYRVEVWDDKDIHIEEIIALTSDYATAKGAYEAAVKRRPGRFIAHREKARVIHSTR
Ga0068852_1011694551	3300005616	Corn Rhizosphere	MGNGEHDLPFKIELLDDADRHIEEVIALASDFASACGAYEEAVKRRPGKLVTLRQKARVIKKSR*
Ga0068864_1025156152	3300005618	Switchgrass Rhizosphere	MGGYDDNLPFRIELWDEADRHIEEVIALASDFASACGAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0066903_1023123493	3300005764	Tropical Forest Soil	MEGQDDDLPFRVELWDDEDSHIEEVIALASDYSTARGAYEEAVKRRPGKLITLRQKSRLIQKSR*
Ga0068860_1003026775	3300005843	Switchgrass Rhizosphere	MSGGNEDLPFRIELWDDAGGNRRGDRPGSDFASTCGAYDEAVERRPGKLITLRQKARVIKKSR
Ga0068862_1026857291	3300005844	Switchgrass Rhizosphere	MAAHDDDLPYRVDVWDDKDTHIEEIIALTSHATAKTAYEATVKRRPGRFITLREKARV
Ga0066652_1010615463	3300006046	Soil	MADDDLPFRVELWDDKDSRIEEIIALVSDYATAKSAYEEAIKRRPGRLITLRQKARVIQKTR*
Ga0070715_102516702	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MRFMGGRDDDLPFRVELWDDKDSHIEEVIALASDYATARSAFDDAVKRRPRKLITLRQKTRVIQKSR*
Ga0097621_1007217513	3300006237	Miscanthus Rhizosphere	MGNGEHDLPFKIELWDDADRHIEEVIALASDYASACGAYDEAVKRRPGKRVTLRQKARVIKKSR*
Ga0068871_1003960174	3300006358	Miscanthus Rhizosphere	VLAVVKARQSRALTCDHLLTDLPFKIELWDDADRHIEEVIALASDYASACGAYDEAVKRRPGKLVTLRQKARVIKKSR*
Ga0075425_1017621081	3300006854	Populus Rhizosphere	MVGRDDDLPFRVELWDDRHIEEVIAMVADYATARSAYEEAIKRRPGKLITLRQKTRVIQKSR*
Ga0105095_106056371	3300009053	Freshwater Sediment	MGGPDDDLPFRIELWDDADRHVEELIALVADFTTAQTAFNDAVKRRPGKLITLRQRRG*
Ga0105247_113008551	3300009101	Switchgrass Rhizosphere	MGGRDDDLPFRIELWDEADRHIEEVIALASDFASACGAYDEAVKRRPGKRITLRQKSRVIKKTR*
Ga0099792_110299891	3300009143	Vadose Zone Soil	MAGRDDDLPFRVELWDDHDRHIEEVIALVSDFATAKSAFEEAVRCRPGRLITLRQKARVIQKSL*
Ga0105094_102840901	3300009153	Freshwater Sediment	MGRREDELPFRIELWDDAVEELIAWVSDFTTAQSTYDDAVERRPKGKLITLRQKARVIKKSR*
Ga0111538_101873543	3300009156	Populus Rhizosphere	LFAMAGPDDDPPFRIELWDDKDSHIEEVIALASDYATARGAFDEAVKRRPGKLITLRQKARVIQKSL*
Ga0105092_104856632	3300009157	Freshwater Sediment	MTGRDDDLPFRIELWDDKDQRVEEVIALAADYFAAQSAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0105237_116959872	3300009545	Corn Rhizosphere	MGGRDDDLPFRIELWDDADRHIEEVIALASDFASACGAYDEAVKRRPGKLITLRQKARVIKKSK*
Ga0126379_114538332	3300010366	Tropical Forest Soil	MEGQDDDLPFRVELWDDEDGHIEEVIALASDYSTARGAYEEAVKRRPGKLITLRQKSRLIQKSR*
Ga0134125_115869571	3300010371	Terrestrial Soil	MGGRDDNLPFRIELWDEADRHIEEVIALASDFASAFGAYDEAVKRRPGKLITLRQKARVIKKSH*
Ga0134125_121964371	3300010371	Terrestrial Soil	LVICSLNERELDLPFKIELWDDADRHIEEVIALASDFASACGAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0134128_120321471	3300010373	Terrestrial Soil	CSHKEIMGGRDDDLPFRIELWDEADRHIEEVIALASDFASACGAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0134126_110516131	3300010396	Terrestrial Soil	MGGRDDDLPFRIELWDDADRHIEEVIALTSDFASACGAYDEAVRRRPGKLITLRQKARVIKKSR*
Ga0134126_113345731	3300010396	Terrestrial Soil	MGGYDDNLPFRIELWDEADRHIEEVIALASDFASAFGAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0134126_121386841	3300010396	Terrestrial Soil	GNEELPFRIELWDEADRHIEEVIALASDFASACGAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0134126_123194952	3300010396	Terrestrial Soil	LTLFAMAGQDDDLPFRIELWDDKESHIEEVIALASDYATARGAFDEAVKRRPGKLITLRQKARVIQKSL*
Ga0126383_100285753	3300010398	Tropical Forest Soil	MEGQDDDLPFRVELWDDKDSHIEEVIALASDYSTARGAYEEAVKRRPGKLITLRQKSRLIQKSR*
Ga0134121_111736692	3300010401	Terrestrial Soil	MGGYDDNLPFRIELWDEADRHIEQVIALAADFASACGAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0134123_115760593	3300010403	Terrestrial Soil	SFLLGLAGHADDLPFRVELWDNKDSHIEEVIALASDYATARSAYEEASSRPGKLITLRQKTRVIQKSR*
Ga0150984_1225493112	3300012469	Avena Fatua Rhizosphere	MGGRDDDLPFRIELWDEAGRHIEEVIALASDFGSACGAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0157302_105339502	3300012915	Soil	MREDDLQYRVDVCDDKDSHVEEIIALTSDYATAKSAYEEAVKRRPGRFITLRHGARVIQSTRRN*
Ga0126375_106145321	3300012948	Tropical Forest Soil	MEGQDDDLPFRVELWDDEDSHIEEVIALASDYSTARGAYEEAVKRRPGKLITLRQKSRLIPKSR*
Ga0157374_101246883	3300013296	Miscanthus Rhizosphere	FRIELWDDKESHIEEVIALASDYATARGAFDEAVKRRPGKLITLRQKARVIQKSL*
Ga0157378_121252421	3300013297	Miscanthus Rhizosphere	MSGGEQDLPFRIELWDDADRHIEEVIALASDFASACGAYDEAVKRRPRKLITLRQKARVIKRSR*
Ga0157375_108685381	3300013308	Miscanthus Rhizosphere	GQDDDLPFRIELWDDKDSHIEEVIALASDYATARGAFDEAVKRRPGKLITLRQKARVIQKSL*
Ga0157375_112947601	3300013308	Miscanthus Rhizosphere	LMGNGEHDLPFKIELWDDADRHIEEVIALASDYASACGAYDEAVKRRPGKLVTLRQKARVIKKSR*
Ga0163163_107031302	3300014325	Switchgrass Rhizosphere	MRGRDDDLPFRIELWDEADRHIEEVIALASDFASACGAYDEAVKRRPGKRITLRQKSRVIKKTR*
Ga0163163_114302473	3300014325	Switchgrass Rhizosphere	MGGRDDNLPFRIELWDEADRHIEEVIALAADFASGCGAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0157379_105255681	3300014968	Switchgrass Rhizosphere	MAAHHDDLPYRVDVWDDKDTHIEEIIALTSDATAKTAYEATVKRRPGRFITLREKARVF
Ga0157379_107889911	3300014968	Switchgrass Rhizosphere	PFRIELWDDADQRLEELIALVGDFATASSAYEEAVRRRPGKLITLRQKARVIKRSR*
Ga0137414_12618143	3300015051	Vadose Zone Soil	MAGRDDDLPFRVELWDDHDRHIEEVIALVSDFATAKSAFEEAVRCRLGRLITLRQKARVIQKSL*
Ga0173483_100398643	3300015077	Soil	MREDDLPYRVEVWDDKDSHIEELIALTSDYATAKSAYEEAVKRRPGRFTLRQKARIIQSTRKN*
Ga0132258_128151143	3300015371	Arabidopsis Rhizosphere	MSGEPHLPFKIELWDDADRHLEEVIALASDFASACGAYDEAVKRRPGKLITLRQKARVIKKSR*
Ga0132256_1003445071	3300015372	Arabidopsis Rhizosphere	MSGGEQDLPFRIEIWDDADRHIEEVIALASDFASACGAYDEAVKRRPGKLITLRQK
Ga0132255_10002450012	3300015374	Arabidopsis Rhizosphere	MSGGEQDLPFRIELWDDADRHIEEVIALASDFASACGAYDEAAKRRPGKLITLRQKARLIKRSR*
Ga0132255_1005840375	3300015374	Arabidopsis Rhizosphere	AGHADDLPFRVELWDNKDSHIEEVIALASDYATARSAYEEASSRPGKLITLRQKTRVIQKSR*
Ga0132255_1045338362	3300015374	Arabidopsis Rhizosphere	VGGRDDDLPFRIDDADRHIEEVIALASDFASACGAYEEAVRRRPGKLITLRQKARVIKKSK*
Ga0182039_104464302	3300016422	Soil	MIDFVPYSFCNAIMVGRDDDLPFRVELWDDKDSHIEEVLALASDYATARSAFDDAVKRRPGKLIPLRQKTRVIQKSR
Ga0184609_101972103	3300018076	Groundwater Sediment	MGGRDEDLPFRIELWDDGGRHVEEVVALASDFSTAQSAYEEAVRRQPGKLITLRQKARVIKKSS
Ga0190265_124572821	3300018422	Soil	MVGRDDDLPFRIELWDDGDKHVEEVIALASDFSSACGAYAEAVKRRPGKLITLRQKARVIKRSR
Ga0190265_127806332	3300018422	Soil	SFSWPDLGRDGDLPFQIELWDDGDKHVDEVIALASDFSTAQGAYDEAVKRRPGRLITLRQKARVIKKSR
Ga0190265_135851841	3300018422	Soil	DLVPVSFFKSEPDDLPFRIELWDDAYQRVDELIALTGDYATACSAYGEAVKRRPGKLITLRQKARVIKRSRS
Ga0190270_107368303	3300018469	Soil	MDLSSGDFAYRIDLWDDADTRIEEVIALVSDFYIASSAYEEAVKRRPGKRITLRQKARVIKKSR
Ga0173481_101099631	3300019356	Soil	MREDDLPYRVNVWDDKDSHIEEIIALTSDYATAKSAYEEAVKRRPGRFITLREKARVIKSTRMN
Ga0207710_101908453	3300025900	Switchgrass Rhizosphere	MSGRDDDFPYRVELWDDADRRIEEVIALASDYASACGAYDEAVKRRPGKLITLRQKARVIKKSR
Ga0207699_110132062	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MALGHQFDLPFFVELWDEKDSHIEEVIALASDYATARGAFDEAVKRRPGKLITLRQKARVIQKSL
Ga0207686_117473401	3300025934	Miscanthus Rhizosphere	GNGEHDLPFKIELWDDADRHIEEVIALASDYASACGAYDEAVKRRPGKLVTLRQKARVIKKSR
Ga0207709_106487641	3300025935	Miscanthus Rhizosphere	QSRALTCDHLLTVSCFVPPCLMGNGEHDLPFKIELWDDADRHIEEVIALASDYASACGAYDEAVKRRPGKLVTLRQKARVIKKSR
Ga0207691_101924211	3300025940	Miscanthus Rhizosphere	MGNGEHDLPFKIELWDDADRHIEEVIALASDYASACGAYDEAVKRRPGKLVTLRQKARVIKKSR
Ga0207711_115412311	3300025941	Switchgrass Rhizosphere	MSGGEQDLPFRIELWDDADRHIEEVIALASDFASACGAYDEAVKRRPGKLITLRQKARVIKRSR
Ga0207679_111899263	3300025945	Corn Rhizosphere	MGGYDDNLPFRIELWDEADRHIEEVIALASDFASACGAYDEAVKRRPGKLITLRQKARVIKKSR
Ga0207658_109638531	3300025986	Switchgrass Rhizosphere	DLPYRVELLDEAERHIEGIIALASDFASACGAYDEAVKRRPGKLITLRQKARVIKKSR
Ga0207658_118353622	3300025986	Switchgrass Rhizosphere	MGNGEHDLPFKIELWDDADRHIEEVIALASDYASACGAYDEAVKRRPGELITLRQKARVIKKSLKQC
Ga0209887_10570361	3300027561	Groundwater Sand	MVGRDDDLPFRIELWDDGDRQVEEVIALVSDFFSAQSAYEEAVRRRPGKLITLRQKARVIKKSR
Ga0209819_103295742	3300027722	Freshwater Sediment	MTGRDDDLPFRIELWDDKDQRVEEVIALAADYFAAQSAYDEAVKRRPGKLITLRQKARVIKKSR
Ga0209481_107355601	3300027880	Populus Rhizosphere	VPCLFSAMGMASHDDDLPFRVEVWDDKDSHIEEIIALTSDYATAKSAFDEAVKRRPGSFITLRQKARIIQSTPKN
Ga0268266_113846763	3300028379	Switchgrass Rhizosphere	SRALTCDHLLTDLPFKIELWDDADRHIEEVIALASDYASACGAYDEAVKRRPGKLVTLRQKARVIKKSR
Ga0268264_108942041	3300028381	Switchgrass Rhizosphere	MGNGEHDLPFKIELWDDADRHIEEVIALASDFASACGAYEEAVKRRPGKLVTLRQKARVIKKSR
Ga0268386_106583042	3300030619	Soil	MGGRDDDLPFRIALWDDKDLHVEEVIAFASDFYAASTAYEETVKRRPGKLITLRQKARVIKQSR
Ga0310909_111363402	3300031947	Soil	MAHGLPFRVELWNEKDSQVIALTADYATPKSAHEEAVKRRPGRLITLRQKTRVIQSTQKN
Ga0306924_118218601	3300032076	Soil	MGQDGDLPFRVEIWDDGDGLIEEIIALTSDYATAKSAYEEAVKRRPGRFITLRQKARVIQSTRKH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096130

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences