NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F096084

Metagenome / Metatranscriptome Family F096084

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096084
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 75 residues
Representative Sequence MRRYLLVLDMDLLALDEELGLEPINYLVAQQEQQPCEVVVLSLVATRQAKLSPLELVLGAATGHAQQAPAK
Number of Associated Samples 84
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 95.45 %
% of genes near scaffold ends (potentially truncated) 20.00 %
% of genes from short scaffolds (< 2000 bps) 20.00 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (86.667 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(24.762 % of family members)
Environment Ontology (ENVO) Unclassified
(27.619 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(42.857 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 18.18%    β-sheet: 16.16%    Coil/Unstructured: 65.66%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF13977TetR_C_6 3.81
PF01243Putative_PNPOx 2.86
PF02861Clp_N 2.86
PF01544CorA 1.90
PF02577BFN_dom 1.90
PF00311PEPcase 0.95
PF10604Polyketide_cyc2 0.95
PF12697Abhydrolase_6 0.95
PF10097DUF2335 0.95
PF13683rve_3 0.95
PF05491RuvB_C 0.95
PF00296Bac_luciferase 0.95
PF04525LOR 0.95
PF05974DUF892 0.95
PF00128Alpha-amylase 0.95
PF00133tRNA-synt_1 0.95
PF08327AHSA1 0.95
PF00266Aminotran_5 0.95
PF04191PEMT 0.95
PF00903Glyoxalase 0.95
PF12680SnoaL_2 0.95
PF13847Methyltransf_31 0.95
PF01152Bac_globin 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG0542ATP-dependent Clp protease, ATP-binding subunit ClpAPosttranslational modification, protein turnover, chaperones [O] 2.86
COG0598Mg2+ and Co2+ transporter CorAInorganic ion transport and metabolism [P] 1.90
COG1259Bifunctional DNase/RNaseGeneral function prediction only [R] 1.90
COG4894Putative phospholipid scramblase YxjI, Tubby2 superfamilyLipid transport and metabolism [I] 0.95
COG0060Isoleucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.95
COG3685Ferritin-like metal-binding protein YciEInorganic ion transport and metabolism [P] 0.95
COG3280Maltooligosyltrehalose synthaseCarbohydrate transport and metabolism [G] 0.95
COG2352Phosphoenolpyruvate carboxylaseEnergy production and conversion [C] 0.95
COG2346Truncated hemoglobin YjbIInorganic ion transport and metabolism [P] 0.95
COG2255Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvBReplication, recombination and repair [L] 0.95
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.95
COG1523Pullulanase/glycogen debranching enzymeCarbohydrate transport and metabolism [G] 0.95
COG0525Valyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.95
COG0495Leucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.95
COG0366Glycosidase/amylase (phosphorylase)Carbohydrate transport and metabolism [G] 0.95
COG02961,4-alpha-glucan branching enzymeCarbohydrate transport and metabolism [G] 0.95
COG0143Methionyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A86.67 %
All OrganismsrootAll Organisms13.33 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005435|Ga0070714_101796938Not Available598Open in IMG/M
3300006163|Ga0070715_10907626Not Available543Open in IMG/M
3300006579|Ga0074054_12000768All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium584Open in IMG/M
3300010043|Ga0126380_10934131All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium724Open in IMG/M
3300010154|Ga0127503_10382082Not Available820Open in IMG/M
3300010373|Ga0134128_11785432All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium677Open in IMG/M
3300010376|Ga0126381_102356528Not Available764Open in IMG/M
3300016371|Ga0182034_10688080All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium869Open in IMG/M
3300017939|Ga0187775_10130452Not Available876Open in IMG/M
3300021560|Ga0126371_11936709Not Available708Open in IMG/M
3300025906|Ga0207699_11149987All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300025915|Ga0207693_11346998Not Available532Open in IMG/M
3300025916|Ga0207663_10453525All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia989Open in IMG/M
3300030677|Ga0302317_10439676All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia572Open in IMG/M
3300031781|Ga0318547_10247570All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1074Open in IMG/M
3300031792|Ga0318529_10240001All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria843Open in IMG/M
3300031879|Ga0306919_10780442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria735Open in IMG/M
3300031879|Ga0306919_11402759Not Available527Open in IMG/M
3300032065|Ga0318513_10502304All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium593Open in IMG/M
3300032770|Ga0335085_10271677All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2025Open in IMG/M
3300032782|Ga0335082_10960418All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium718Open in IMG/M
3300032896|Ga0335075_11288920All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium626Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil24.76%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil16.19%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere15.24%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.81%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil3.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.86%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.86%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.86%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.90%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.90%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.90%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.95%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.95%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.95%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.95%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.95%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.95%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.95%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.95%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005169Soil and rhizosphere microbial communities from Laval, Canada - mgHPAEnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006573Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006579Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010154Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300017939Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MGEnvironmentalOpen in IMG/M
3300017944Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MGEnvironmentalOpen in IMG/M
3300018032Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030677Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031794Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_11918798913300000956SoilMRRYLLVLDMDLLALDEELDLEPINYLVARQEQERCEVVVLSPVATRQAKLSSLELLLGAAATPDAAAPAKFPGAP
Ga0066672_1022489313300005167SoilMRRYLLVLDMDLLAQNEELDLEPINYLAARQEQERGEVVVLSVVANRQVKLSPMELLLGAASA
Ga0066810_1001459423300005169SoilMVQSRPTAVGLGCEQPLGVMPMRRCLLVLDMDLLGLGEELDPGPINYLAARPEQERGEVVVLSVMASRQVKLSPLELLLGAATAHGQ
Ga0070680_10171424523300005336Corn RhizosphereMRRYLLVLDMDLLALDEELGLEPINYLVAQQEQERGEVVVLSLVATRQAKLSPLELVL
Ga0070709_1054088013300005434Corn, Switchgrass And Miscanthus RhizosphereMWRYLLVLDMDLLELGEEPGLEPVSYLAGRPEQERGEVVVLSVAASRQVKLSPLELLLGAATAHGQSAPAKY
Ga0070709_1109242613300005434Corn, Switchgrass And Miscanthus RhizosphereMRRYLLVLDMDLLALDEELDLEPINYLVAQQVEEQERGEVVVLSLVATRQAKLSPLELVLGAATGRGLARFPTAPQPG
Ga0070714_10007493313300005435Agricultural SoilMAMRRYLLVLDMLALDEELDQGPISYLVAQQEQQPCSVVVLSLVATRQAKLSPLELVLGAATAHGQ
Ga0070714_10179693813300005435Agricultural SoilMDMRRYLLVLNMDLLALDEELDLEPINYLVARQGKEQERGEVVVLSLVATRQAKLSPLELVLGAATG
Ga0070713_10087291523300005436Corn, Switchgrass And Miscanthus RhizosphereMRRYLLVLDMDLLALDEELGLEPINYLVAQQEQQPCEVVVLSLVATRQAKLSPLELVLGAATGHAQQAPAK
Ga0070713_10204486913300005436Corn, Switchgrass And Miscanthus RhizosphereMAMRRYLLVLDMLALDEELDQGPISYLVAQQEQQPCNVVVLSLVATRQAKLSPLELVLGAATAHGQ
Ga0070713_10235152923300005436Corn, Switchgrass And Miscanthus RhizosphereMRRYLLVLDMDLLALDEELDLEPINYLVAQQVKEQERGEVVVLSLVATRQAKLSPLELVLGAATG
Ga0066707_1036165823300005556SoilMRRYLLVLDMDLLAQNEELDLEPINYLVARQEQERGEVVVLSVVANRQVKLSPMELLLGAASAHPQSAPSKYPTAPQPGHPVNAAAE
Ga0066903_10162625913300005764Tropical Forest SoilMRRYLLVLDMDLLALGEELGQEPINYLVARQERERAEVVVLSLAASRQVKLSPLQLLLGAATAQAQHAPAKYPTAPR
Ga0070715_1090762613300006163Corn, Switchgrass And Miscanthus RhizosphereMAMQRYLLVLDMDLLALDEELDLEPINYLVTRQEQEQERGEVVVLSLAATRQAKLSPL
Ga0070712_10119472223300006175Corn, Switchgrass And Miscanthus RhizosphereMRRYLLVLDMDLLAQNEELDLEPINYLAARQEQDRGEVVVLSVVANRQVKLSPMELLLGAASAHPQSAPSKYPTAP
Ga0070712_10138434913300006175Corn, Switchgrass And Miscanthus RhizosphereMRRYLLVLDMDLLALDEELDLEPVNYLLAQQERQLCDVVVLSLAATRQAKLSPLELVLGA
Ga0074055_1126292923300006573SoilMRRCLLALDMDLLGLGEELDLGPINYLAARPEQERGEVVVLSVVASHQVKLSPLELLLGAATAHGQSAPAKYPTGPQPGHGANADAEHRMN
Ga0074054_1200076813300006579SoilMRRYLLVLDMDLLALGEESDLEPVSYLAGRPEQERGEVVVLSIAASRQVKLSPLELLLGAATAHSQSAPAKYPTGPQPGHGVNADAEHRMNLAVRRLK
Ga0066665_1072619413300006796SoilMRRCLLVLDMDLLGLGEESGLEPVSYLAGRPEQERGEVVVLSVAASRQVKLSPLELLLGAATAHGQSAPAK
Ga0079221_1146146023300006804Agricultural SoilMRRYLLVLDIDLLALDEELGLEPVSYLMAQQERQPCDVVVLALVATRQAKRSPLELVLGAASG
Ga0099792_1096121513300009143Vadose Zone SoilMAMRRYLLVLDMDLLAQNEELDLEPINYLVARQEQERGEVVVLSVVASRQVKLSPMELLLGAATARPEAAPSKYPTAPQPGHPVNAAAEHRT
Ga0126374_1087918413300009792Tropical Forest SoilMRRYLLVLDMDLLALDEELDLQPINYLVAQQEQQPCEVVVLSMVAARQAKLSPLELVLGAATGQHSPAK
Ga0126380_1093413123300010043Tropical Forest SoilMRRYLLVLDMDLLALDEELDLQPINHLIARQEQERGEVVVLSLAATRLAKLSPLELALGAAISLNRATP
Ga0126382_1128194323300010047Tropical Forest SoilMAMRRCLLVLDMDLLGPDEELDLEPINYLGARQEQERGEVVVLSLVANRQVKLSPLELLLGAATAPGQHAPAKYPTAPQPGHDVNAAPSIV*
Ga0126382_1200854913300010047Tropical Forest SoilMAMRRYLLVLDMDPLALDEELGQEPINYLVAQQERQPCDVVVLSLVATPRAKLSALELLLGAAIGKPSAAPGR*
Ga0127503_1038208223300010154SoilMRLRCHQFEEVMDMRRYLLVLDIDLLGLGEELDLEPINYLVARQEQEQERGEVVVLSVVASRQVKLSPLELLLGAATAHGQSAPAKYPT
Ga0126370_1123838123300010358Tropical Forest SoilMAMRRYLLVLDMDLLALDEALDLQPINHLVARQEREGERAEVVVLSLAATHLAKLSRLELALGAAISLNIATPVKYPVAPR
Ga0126370_1183192213300010358Tropical Forest SoilMGRHRLFEEVVAMRRYLLVLDMDLLALDEELDLQPINYLVARREQEPGEVVVLSLAASHQARLSPLELALGAAV
Ga0126379_1119863213300010366Tropical Forest SoilMAMRRYLLVLDMDLLALGEELGQEPINYLVARQERERAEVVVLSLVASRQVKLSPLQLLLGAATAQAQHAPAKYPTAPRPGHDVS
Ga0134128_1178543223300010373Terrestrial SoilMDMRRYLLVLDMDLLALDEELDLEPINYLVARQEQERCEVVVLSPVAIRQAKLPWLELL
Ga0105239_1166596523300010375Corn RhizosphereMAMRRYLLVLDMDLLALDEELGLEPINYLVAQQEQQPCEVVVLSLVATRQAKLSPLELVLGAATGHAQQAPAKYP
Ga0126381_10056663113300010376Tropical Forest SoilMPASPVHHRHRDEEVMAMRRYLLVLDMDLLALDAELDLQPINYLVAQQEQQPCEVVVLSLVATRQAKLSPLELVLGAATGHAQQAPAKYPTAPQ
Ga0126381_10235652813300010376Tropical Forest SoilMRRYLLVLDMDLLALDQKLDLAPINYFVAQQEQQPCEVVVLSLVATRQAKLSSLELVLGAATGHAQQVPAKYPVAPRPDHDINAAAEHRMR
Ga0134126_1279935023300010396Terrestrial SoilMAMRRYLLVLDMLALDEELDQGPISYLVAQQEQQPCNVVVLSLVATRQAKLSPLELVLGAAPAHGQSAPAKFPGAPQPGHNISA
Ga0126383_1114837113300010398Tropical Forest SoilMAVRRYLLVLDMDLLALDQELDLQPINHLVARPEPERGEVVVLSLVATRQARLSRLELMLGAAISLNMPSPAKYPVAPRPDH
Ga0126383_1297913823300010398Tropical Forest SoilMAMRRYLLVLDMDLLALDEELGQEPISYLAVQQEQQPCEVVVLSLVATRRAKLSAFELGL
Ga0137383_1136133713300012199Vadose Zone SoilMAMRRYLLVLDMDLLGLGEELDLELINYLVARQEQEQERGEVVVLSMAANRKVKPSPLELLLGAATAHGQSAP
Ga0137376_1020273113300012208Vadose Zone SoilMAMRRCLLVLDMDLLGLGEEPGLEPVSYLAGRPEQERGEVVVLSVAASRQVKLSPLELLLGAATAHGQS
Ga0137398_1045848613300012683Vadose Zone SoilMRRYLLVLDMDLLAQNEELDLEPINYLVARQEQERGEVVVLSVVANRQVKLSPMELLLGAATARPEAAPSKYPTAPQPGHP
Ga0137407_1053314023300012930Vadose Zone SoilMAMRRYLLVLDMDLLAQNEELDMEPINYLVARQEQERGEVVVLSVVANRQVKLSPMELLLGGATAHGLSAPSKYPTANAV*
Ga0126375_1028226813300012948Tropical Forest SoilMRRCLLVLDVDLVGLGEELDLGPINYLAARPEQERGEVVVLSVVASRQVKLSSLELLL
Ga0126375_1080863623300012948Tropical Forest SoilMGVMAMRRYLLVLDMDLSALGEELDQEPISYLVSRQEQERGEVVVLSLITSRQVKLSPLELLLGAATAQGQHAPSKYPTAPQPG
Ga0126369_1086285513300012971Tropical Forest SoilVLPSTFIEVMAMRRYLLVLDMDLLALGEELGQEPINYLVARQERERAEVVVLSLAASRQVKLSPLQLLLGA
Ga0126369_1344494913300012971Tropical Forest SoilVIAVRRYLLVLDMDLLALDQELDLKPINHLVARQEQERGEVVVLSLVATRQAKLSRLELALGAAISLNMPSPAKYPVAPRPD
Ga0182034_1038699813300016371SoilMRRYLLVLDMDLLALDEELGQQPINYLLARQEQEQGPAEVVVLSLAANRHVKLSPLELLLGAAT
Ga0182034_1068808013300016371SoilMRRYLLVLDMDLLALGEELGQEPINYLVARQEQEQAEVVVLSLVANRQVKLSPLELLLGAATAQGQHAPAKYPTAPQPGHDVSAAAEHRMNRAVRYL
Ga0187775_1013045213300017939Tropical PeatlandMRRYLLVLDMDLLALDEELDLQPINHLVARQEQERAEVVVLSLVATRHAKLSPLELALGAAISLNIPTPV
Ga0187786_1026307713300017944Tropical PeatlandMRRYLLVLDMDLLALDEELDLQPINHLVARQEREGERAEVVVLSLAATHLAKLSRLELALGAAISLNIPTPVKYPVAPRPGHDINAAA
Ga0187788_1023796913300018032Tropical PeatlandMRRYLLVLDMDLLAPDEELDLEPISYLVARQEQERGEVVVLSLAATRQAKLSPLELALGAAISLNIPTPVKYPVAPRPGHDINAAA
Ga0066667_1227701713300018433Grasslands SoilMRRYLLVLDMDLLAQNGELDLEPLNYLAARQEQERAAVVVPCVVDTRDEPRPPVQLLLGAARDHAE
Ga0210399_1062520213300020581SoilMRRYLLVLDMDLLAQNEELDLEPINYLAARQEQERGEVVVLSVVANRQVKLSPMELLLGGATAHGLSAPSKY
Ga0210402_1088486113300021478SoilMERNRPTAAGLGCEQPLGVMPMRRYLLVLDMDLLGLGEELDLGPINYLAARPEQERGEVVVLSVVASRQVKLSPLELLLGAATAQGQSAPAKYPTGP
Ga0126371_1070343313300021560Tropical Forest SoilMRRYLLVLDMDLLAPNEELDLEPVSYLNARQEQERGEVVVLAVVAKRQVRLSPLELLLGAATAHGQSAPAKYPTAPQP
Ga0126371_1193670913300021560Tropical Forest SoilMRRYLLVLDMDLLALDAELDLQPINYLVAQQEQQPCEVVVLSLVATRQAKLSPLELVLGAATGHAQQAPAKYPTAPQPRHDINAAAEHR
Ga0207692_1033488423300025898Corn, Switchgrass And Miscanthus RhizosphereMRRYLLVLDMDLLALDEELDLEPINYLVAQQVEEQERGEVVVLSLVATRQAKLSPLELVLGAATGHGPAKFPTA
Ga0207699_1085418713300025906Corn, Switchgrass And Miscanthus RhizosphereMRRYLLVLDMDLLALDEELDLEPINYLVAQQVEEQERGEVVVLSLVATRQAKLSPLELVLGAATGRGLARFPTA
Ga0207699_1114998713300025906Corn, Switchgrass And Miscanthus RhizosphereMAMLRYLLVLDMLALDEELDQGPISYLVAQREQQPCNVVVLSLVATRQAKLSPLELV
Ga0207707_1071675023300025912Corn RhizosphereMRRYLLVLDMDLLALDEELGLEPINYLVAQQEQQPCEVVVLSLVATRQAKLSPLELVLGAATGHA
Ga0207693_1134699813300025915Corn, Switchgrass And Miscanthus RhizosphereMQRYLLVLDMDLPGLSEELDLEPINYLAARHEQDRGEVVVLSVVAKRQVKLSPLELLLGAATAHGQSAPAKYPTAPQPGHDVHAGAEHRMNLAVRHL
Ga0207663_1045352513300025916Corn, Switchgrass And Miscanthus RhizosphereMDMRRYLLVLNMDLLALDEELDLEPINYLVARQGKEQERGEVVVLSLVATRQAKLSPLEL
Ga0207663_1106377313300025916Corn, Switchgrass And Miscanthus RhizosphereMRRYLLVLDMDLLALDEELDLEPVNYLLAQQERQLCDVVVLSLAATRQAKLSPLELVLGAAAGPGGLAKFPGAPPPG
Ga0207663_1147569323300025916Corn, Switchgrass And Miscanthus RhizosphereMRRYLLVLDVDLLGLGEELDPGPINYLAARPEQERGEVVVLAVMASRQVKLSPLELLLGAATAHSQSAPAKYPTGPQPGHGVN
Ga0207687_1148718523300025927Miscanthus RhizosphereMRRYLLVLDMDLLALDEELGLEPINYLAARQEQERGEVVVLSVVANRQVKLSPMELLLGA
Ga0207700_1019059443300025928Corn, Switchgrass And Miscanthus RhizosphereMDMRRYLLVLNMDLLALDEELDLEPINYLVARQGKEQERGEVVVLSLVATRQAKLSPLELVLGAATGRGLARFPTA
Ga0207664_1027187913300025929Agricultural SoilMRRYLLVLDMDLLAPDEELGLEPVSYLVAQQERQPCDVVVLSLVATRQAKRSPLELVLGAASGSAGAAPAKSP
Ga0207664_1049003223300025929Agricultural SoilMAMRRYLLVLDMLALDEELDQGPISYLVAQQEQQPCSVVVLSLVATRQAKLSPLELVLGAATAHGQSAPAKFPGAPQPGHNISVA
Ga0207698_1157263523300026142Corn RhizosphereMRRYLLVLDMDLLAQNEELDLEPINYLVARQEQERGEVVVLSVVANRQVKLSPMELLLGAASAHPASAPSKYP
Ga0179587_1098572713300026557Vadose Zone SoilMRRYLLVLDMDLLAQNEELDLEPINYLVARQEQERGEVVVLSVVANRQVKLSPMELLLGAATARPEAAPSKYPTAPQPGHPVNAAA
Ga0307504_1023464513300028792SoilMRRYLLVLDMDLLAQNEELDLEPINYLVARQEQERGEVVVLSVVANRQVKLSPMELLLGAASAHPQSAPSKY
Ga0307299_1021529023300028793SoilMQRYLLVLDMDLLGPDEELDLEPVNYLAARHEQEQGEVVVLAVAASRQVKLSPLELLLGAATAHGQSAPAKYPTAPQPGHHIHTAAEHRMNL
Ga0307308_1002913733300028884SoilMRRYLLVLDMDLLALDEELDLEPINYLVAQQEQQPCEVVVLSLVATRQAKLSPLELVLGAATGHAQQAPAKYPVAP
Ga0222749_1029157523300029636SoilMRRYLLVLNMDLLAQNEELDLEPINYLAARQEQERGEVVVLSVIANRQVKLSPMELLLGGATAHGESAPSKYPTAP
Ga0302317_1043967613300030677PalsaVRRYLLVLDMDLLALDEELDLAPINYLLAQQEQEPCEVMVMSLAWTRQARLPAME
Ga0318528_1060366513300031561SoilMRRYLLVLDMDLLALGEELGQEPINYLVARQEQERTEVVVLSLVANRQVKLSPLELLLGAATAQGQHAPAKYPTPPRPGHDVSAAAEHRMNRAVQH
Ga0318573_1027778913300031564SoilMRRYLLVLDMDLLALDEELGQEPISYLVAQQEQQPCDVVVLSIVATRQAKLSPLELM
Ga0318515_1035582823300031572SoilMAMRRHLLVLDMDLLALGEELGQEPINYLVARQEQEQAEVVVLSLVANRQVKLSPLELLLGAATAQGQHAPAKYPTAPQPGHDVSAAAEHRMNRAVR
Ga0310915_1111139813300031573SoilVRRYLLVLDMDLLALDEELDLEPINYLVTRQEQERSEVVVLSLVATRQAKLSSLELLLGAAQGTHVPQKFPRAP
Ga0318555_1052523013300031640SoilMRRYLLVLDMHLLALGEELGQEPINYLVARQEQEQAEVVVLSLVANRQVKLSPLELLLGAATAQGQHAPAKYP
Ga0318493_1004968013300031723SoilMRRYLLVLDMDLLALDEELDREPVNYLAARKEQERAEVVVLAVVASRPAKLSPLELLLGAATAHGQSAPAKYPTAPQPGHHVNA
Ga0318501_1054986323300031736SoilMGVMAMRRYLLVLEMDLLALGEELGQEPINYLVARQEQEQAEVVVLSLVANRQVKLSPLELLLGAATAQGQHA
Ga0307468_10098524523300031740Hardwood Forest SoilMRRYLLVLDMDLLALDEELGLEPINYLVAQQEQQPCEVVVLSLVATRQAKLSPLELVLGAATGQHTP
Ga0318543_1023341523300031777SoilMRRYLLVLDMDLFALGEELGQEPINYLVARQEQEQAEVVVLSLVANRQVKLSPLELLLGAATAQGQHAPAKYPTAPQPGHDV
Ga0318543_1033362723300031777SoilMRRYLLVLDMDLLALDEELDREPVNYLAARKEQERAEVVVLAVVASRPAKLSPLELLLGAATAHGQSAPAKYPTAPQPGHHVNAAAEHRMNLA
Ga0318566_1003947113300031779SoilMRRYLLVLGMGLLTLNEELDLEPVNYLVGRQEQERGEVVVLAVVANRPVKLSPLELLLGAATAHGQSAPAKYPTAPQPGHHVSAAAEHRMN
Ga0318547_1024757023300031781SoilVRRYLLVLDMDLLALDEELDLEPINYLVTRQEQERSEVVVLSLVATRQAKLSSLELLLGAAQGT
Ga0318547_1062695813300031781SoilMRRYLLVLDMDLLALDEELGQEPISYLVAQQEQQPCDVVVLSIVATRQAKLSPLELMLGAATGHAQQAPAKYP
Ga0318552_1023976323300031782SoilMRRYLLVLDMDLHALDEELDLEPVNYLVARHEQERGEVVVLSVVASRPVKLSPLELLLGAATAHG
Ga0318529_1024000113300031792SoilVRRYLLVLDMDLLALDEELDLEPINYLVTRQEQERSEVVVLSLVATRQAKLSSLELLLGAAQG
Ga0318503_1016280313300031794SoilMRRYLLVLDMDLLALDKELDLGPIDYLVARQEQDPSEVVVLSLVATRQAKLSPLELLLGAATSQAA
Ga0306919_1078044223300031879SoilMRRYLLVLDMDLLALDEELGQEPISYLVAQQEQQPCDVVVLSIVATRQAKLSP
Ga0306919_1140275913300031879SoilMRRYLLVLDMDLLALDEELDREPVNYLAARKEQERAEVVVLAVVASRPAKLSPLEL
Ga0318536_1065496313300031893SoilMRRYLLVLDMDLLALDEELGQEPISYLVAQQEQQPCDVVVLSIVATRQAKLSPLELMLGAATGHAQQAPAK
Ga0318520_1029288723300031897SoilMRRYLLVLDMDLFALGEELGQEPINYLVARQEQERAEVVVLSLVANRQVKLSPLELLLGAATARGQHAPAKYPTAPRPGHDVSAAA
Ga0318520_1073099313300031897SoilVRRYLLVLDMDLLALDEELDLEPINYLVTRQEQERSEVVVLSLVATRQAKLSSLELLLGAAQGTHVPQKFPRAPRPDHDINAAAEH
Ga0306926_1140507323300031954SoilMRRYLLVLDMDLLALDEELDQEPVNYLVTQQERQSCEVVVLSMVATRQAKLSPLELMLGAATGH
Ga0318562_1007414333300032008SoilMGRYLLVLDLDLLTLNEELDLEPVNYLVARQEQKRGEVVVLSVVASRPVKLSPLELLLGAATAHGQSAPAKYPTAPQPGHHGNAAAEHST
Ga0318563_1072859513300032009SoilVRRYLLVLDMDLLALDEELDLEPINYLVTRQEQERSEVVVLSLVATRQAKLSSLELLLGAAQGTHVPQKFPRAPRPDHDIN
Ga0318559_1055518513300032039SoilMRRYLLVLDMDLLALGEELGQEPINYLVARQEQEQAEVVVLSLVANRQVKLSPLELLLGAATAQGQHAPAKYP
Ga0318513_1050230413300032065SoilVRRYLLVLDMDLLALDEELDLEPINYLVTRQEQERSEVVVLSLVATRQAKLSSLELLLGAAQ
Ga0318577_1003435933300032091SoilMRRYLLVLDMDLLALDEELDREPVNYLAARKEQERAEVVVLAVVASRPAKLSPLELLLGAATATMTR
Ga0307472_10087036323300032205Hardwood Forest SoilMRRYLLVLDMDLLARGEELDPEPINYLAARPEQEQGEVVVLSLAASRQVKLSPLELLLGAATAHGQSAPTKYPTAPQS
Ga0306920_10143603913300032261SoilMRRYLLVLDMDLLALDEELGQQAINYLLARQEQAQGPAEVVVLSLAANRQVKLSPLELLLGAATAHGQSAPAKYPTAPQQGHNV
Ga0335085_1027167723300032770SoilMRRYLLVLDMDLLALDEELDLEPISYLVARQEQQRGEVVVLSLADTRQAKLSPLELALGAAISLNIPTR
Ga0335082_1096041813300032782SoilMRRYLLVLDMDLLALDEELDLQPINHLVARQEQERAEVVVLSLAATRQAKLSPLELALGAAISLNIPTPVKYPVAPRPGHDINAA
Ga0335075_1128892013300032896SoilVRRYLLVLDMDLLALDEELDLEPINYLVARQELQPCEVVVLSLTDTRQAKLSPMELLLGAGIGKFPV


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