NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F096059

Metagenome / Metatranscriptome Family F096059

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F096059
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 40 residues
Representative Sequence QRRASEAELAAARRAFEEDAGVKGLRERFGATVLPETVRPVK
Number of Associated Samples 99
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 91.43 %
Associated GOLD sequencing projects 95
AlphaFold2 3D model prediction Yes
3D model pTM-score0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (72.381 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(29.524 % of family members)
Environment Ontology (ENVO) Unclassified
(29.524 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(40.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54
1SwRhRL3b_0930.00001570
2Ga0066823_101097542
3Ga0008090_157594913
4Ga0070714_1014316791
5Ga0070733_105408711
6Ga0070665_1007279483
7Ga0066656_102069384
8Ga0075441_101432123
9Ga0075021_103337361
10Ga0079220_105327531
11Ga0123356_102232201
12Ga0126370_115256173
13Ga0126376_118291321
14Ga0126372_111678963
15Ga0134125_111319543
16Ga0134128_124166043
17Ga0105239_109175611
18Ga0136821_12511414
19Ga0126344_13278882
20Ga0137360_117639971
21Ga0150984_1116324453
22Ga0137407_120485202
23Ga0168317_10302911
24Ga0163163_115302353
25Ga0132257_1001829601
26Ga0132255_1033156141
27Ga0182035_117490741
28Ga0182032_118296111
29Ga0187785_105059213
30Ga0187778_103462091
31Ga0187783_107726101
32Ga0187777_105508271
33Ga0187815_103267091
34Ga0187770_100554216
35Ga0206356_105085361
36Ga0187768_11271502
37Ga0210399_105381793
38Ga0210396_113293611
39Ga0210385_107504461
40Ga0210386_106851051
41Ga0213879_102450091
42Ga0187846_101886773
43Ga0242669_11051402
44Ga0207693_101182844
45Ga0207694_104515673
46Ga0207664_103668564
47Ga0207711_100847225
48Ga0207698_107930901
49Ga0209057_10347056
50Ga0207815_10487781
51Ga0209524_10152161
52Ga0209419_10770551
53Ga0208984_10084954
54Ga0209815_11465572
55Ga0209693_105745812
56Ga0209167_101135314
57Ga0209167_101987453
58Ga0209465_100561481
59Ga0209590_108148272
60Ga0209380_103893041
61Ga0209006_109896723
62Ga0209583_107267871
63Ga0308309_101100864
64Ga0311354_101459415
65Ga0302310_101217681
66Ga0307499_102197811
67Ga0307509_105509481
68Ga0318534_100698274
69Ga0318573_100981451
70Ga0310915_107044553
71Ga0310686_1142853671
72Ga0318496_104315561
73Ga0318493_101449551
74Ga0306918_104994551
75Ga0318521_105032451
76Ga0318552_102045513
77Ga0318503_100838201
78Ga0318576_101052211
79Ga0318576_101727161
80Ga0318523_100608754
81Ga0318497_100363491
82Ga0318497_104360093
83Ga0318568_100866374
84Ga0318544_104306171
85Ga0318522_100545614
86Ga0306923_102721254
87Ga0310912_102618641
88Ga0310910_107912861
89Ga0307479_103906054
90Ga0307479_115529453
91Ga0318563_104208351
92Ga0318563_107878502
93Ga0318569_102053661
94Ga0318507_104765522
95Ga0318575_102107951
96Ga0318513_103641423
97Ga0318553_105506681
98Ga0307471_1004843444
99Ga0307471_1038403521
100Ga0306920_1017636561
101Ga0335081_107878553
102Ga0335075_105861963
103Ga0335076_103922971
104Ga0335077_103617601
105Ga0310914_112921583
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 38.57%    β-sheet: 0.00%    Coil/Unstructured: 61.43%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

510152025303540QRRASEAELAAARRAFEEDAGVKGLRERFGATVLPETVRPVKSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.57
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
72.4%27.6%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Sediment
Marine
Watersheds
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Bulk Soil
Surface Soil
Switchgrass Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Soil
Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Palsa
Biofilm
Weathered Mine Tailings
Termite Gut
Arabidopsis Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Ectomycorrhiza
Switchgrass Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Avena Fatua Rhizosphere
Boreal Forest Soil
Tropical Rainforest Soil
2.9%2.9%2.9%29.5%4.8%3.8%3.8%5.7%3.8%2.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
SwRhRL3b_0930.000015702162886006Switchgrass RhizosphereSLEEVEAAKRALEADPGAQALRERFGATLLPDTVRPLKN
Ga0066823_1010975423300005163SoilAQRRASDSELAQARQAFEEDAGVKGLRERFGASVLPDSVRPVK*
Ga0008090_1575949133300005363Tropical Rainforest SoilASEAELAAARRAFEEDPAVKGLRERFGATVLPETVRPVK*
Ga0070714_10143167913300005435Agricultural SoilDQRVSQQELESARQAFDSDPGVQGLRERFGATLLPDTVRPVK*
Ga0070733_1054087113300005541Surface SoilDQRVSQEEAESARRAFESDPGVQGFRDRFGATMVPETIRPVK*
Ga0070665_10072794833300005548Switchgrass RhizosphereNLEELDSARQALESDPGVQALREKFGATLLPDSVRPLK*
Ga0066656_1020693843300006034SoilARRVSEQELAAARRTFEAEPGVQGLRERFGATVLPDSVRPVK*
Ga0075441_1014321233300006164MarineAEQRASLEDLDSARRAFESDPGVQGLKERFGATLLPETVRPVK*
Ga0075021_1033373613300006354WatershedsAQRRAAEQELAQARRAFDTDPGVKGLRERFGATVLPETVRPVK*
Ga0079220_1053275313300006806Agricultural SoilPAQADQRVSQEEAEAARRAFESDPGVQGFRERFGATPVPETIRPVK*
Ga0123356_1022322013300010049Termite GutSPAQAAQSASQLELEAARRAFDTDPGVQGLRDRFGATVLPESVRPVK*
Ga0126370_1152561733300010358Tropical Forest SoilASEAELASARRAFEEDAGVKGLRDRFGATVLPDTVRPVK*
Ga0126376_1182913213300010359Tropical Forest SoilRRASEAELTAARHAFDEDAGVKGLRERFGAAVLPETVRPVK*
Ga0126372_1116789633300010360Tropical Forest SoilRATQQELSEARRAFDADPGVQGLRERFGATVLPDTVRPVK*
Ga0134125_1113195433300010371Terrestrial SoilERSSLEEIESARRAFEADPGVQGLRERFGATLLPDTVRPLKS*
Ga0134128_1241660433300010373Terrestrial SoilSQQELEAARQAFESDPGVQGLRERFGATLLPDTVRPVK*
Ga0105239_1091756113300010375Corn RhizosphereDSARRALEADPGVQGLRERFGATLLPDTVRPLKSQE*
Ga0136821_125114143300010387SedimentQADAARQAFESDPGVRGFREQFAAEVMPETIRPQK*
Ga0126344_132788823300010866Boreal Forest SoilLDVARQAFETDPGVKSLRERFGATLLPDTIRPVK*
Ga0137360_1176399713300012361Vadose Zone SoilQELDCARRAFEADPGVQGLRERFGATLLPETVRPVK*
Ga0150984_11163244533300012469Avena Fatua RhizosphereEKRAVVEELDSARQLLESDPAVRALRDTFGATLLPDSVRPLK*
Ga0137407_1204852023300012930Vadose Zone SoilAEQRASMEDLDAARRAFESDPGVQGLRERFGATLLPDTIRPVK*
Ga0168317_103029113300012982Weathered Mine TailingsQRVSQAELEAARQAFESDPGAQGLRERFGATLLPDTVRPVK*
Ga0163163_1153023533300014325Switchgrass RhizosphereVEELDSARQSLESDPAVRALRETFGATLLPDSVRPLK*
Ga0132257_10018296013300015373Arabidopsis RhizosphereRRAARRAFEEDAGVKGLRERFGATVLPDTVRPVK*
Ga0132255_10331561413300015374Arabidopsis RhizospherePAQAQRSASEAELAAARRAFEDDAGVQSLRERFGATVLPDTVRPVK*
Ga0182035_1174907413300016341SoilPAQAQRRASEAELTAARRAFDEDAGVKGLRERFGAAVLPETVRPVK
Ga0182032_1182961113300016357SoilSEAELGAARRAFDEDAGVKGLRERFGAAVLPETVRPVK
Ga0187785_1050592133300017947Tropical PeatlandQRRASEEELAAARRAFEADPGVQGLRERFGATVLPESVRPVK
Ga0187778_1034620913300017961Tropical PeatlandEAELSAARRAFEEDPGVKGLRERFGATVLPDTVRPVK
Ga0187783_1077261013300017970Tropical PeatlandQRRASEAELVAARRAFEEDPAVKGLRERFGATVLPDTVRPVK
Ga0187777_1055082713300017974Tropical PeatlandAQRRASEEELAAARRAFEADPGVQGLRERFGATVLPESVRPLK
Ga0187815_1032670913300018001Freshwater SedimentAGERASQEELEAARRAFESDPAVQGFRERFGAAPLPETIRPVK
Ga0187770_1005542163300018090Tropical PeatlandPALLARRASEAELAAAQRAFADDPGVRGLRERFGATVLSETVRPVK
Ga0206356_1050853613300020070Corn, Switchgrass And Miscanthus RhizospherePAQAGERATQEEAEAARRAFESDPGVQGFRERFGATPLPETIRPLK
Ga0187768_112715023300020150Tropical PeatlandRATQQELTEARRAFEADPGVQGLRERFGATVLPDTVRPVK
Ga0210399_1053817933300020581SoilELAAARRAFEADPGVQGLRERFGATVLPDSVRPVK
Ga0210396_1132936113300021180SoilELSVARRAFEADPNVQGLRERFGATVLPDTVRPVK
Ga0210385_1075044613300021402SoilDEELASARRAFEDDAGVKGLRERFGATVLPDTVRPLK
Ga0210386_1068510513300021406SoilRASQQELEAARQAFETDPGVKGLRERFGATLLPNTIRPVK
Ga0213879_1024500913300021439Bulk SoilAQRASQQELAVARSAFEADPGVQGLRERFGATVLPDTVRPVK
Ga0187846_1018867733300021476BiofilmAHAAQRASQQELTQARRAFETDPGVQGLRERFGATVLPDTVRPVK
Ga0242669_110514023300022528SoilAQRASQQELSSARRAFEADPGVQGLRERFGATVLPDTVRPLK
Ga0207693_1011828443300025915Corn, Switchgrass And Miscanthus RhizosphereAQRRASEAELAAARRAFEEDAGVKGLRERFGATVLPDTVRPVK
Ga0207694_1045156733300025924Corn RhizosphereAEQRASQQELDNARQSFEADPGVQGLRERFGATLLPDTVRPVK
Ga0207664_1036685643300025929Agricultural SoilAQRRASDTELAQARQAFEEDAGVKGLRERFGATVLPDSVRPVK
Ga0207711_1008472253300025941Switchgrass RhizosphereRASDTELAQARQAFEEDAGVKGLRERFGATVLPDSVRPVK
Ga0207698_1079309013300026142Corn RhizosphereSSQEEIDSARRALEADPGVQGLRERFGATLLPDTVRPLKSQE
Ga0209057_103470563300026342SoilVSEQELAAARRAFEADPGVQGLRERFGATVLPESVRPVK
Ga0207815_104877813300027014Tropical Forest SoilSETELAGARRAFEEDAGVKGLRERFGATVLPDTVRPVK
Ga0209524_101521613300027521Forest SoilEQELAAARRAFEADPGVQGLRERFGAAVLPDTVRPVK
Ga0209419_107705513300027537Forest SoilRRASEQELAAARRAFEADPGVQGLRERFGATVLPDSVRPVK
Ga0208984_100849543300027546Forest SoilRASEQELAAARRAFEADPGVQGLRERFGAAVLPDTVRPVK
Ga0209815_114655723300027714MarineAEQRASLEDLDSARRAFESDPGVQGLKERFGATLLPETVRPVK
Ga0209693_1057458123300027855SoilDEELSVARRAFEEDAGVKGLRERFGATVLPDTVRPVK
Ga0209167_1011353143300027867Surface SoilSDADLAVARQAFQEDPGVRGLRERFGATVLPETVRPVK
Ga0209167_1019874533300027867Surface SoilELTEVRRAFEADPGVQGLRERFGATVLPETVRPVK
Ga0209465_1005614813300027874Tropical Forest SoilPAQAQRRATEAELSVARRAFDEDAGVKGLRERFGAAVLPETVRPVK
Ga0209590_1081482723300027882Vadose Zone SoilRRARRVSEQELAAARRAFEADPGVQGLRERFGATVLTDSVRPVK
Ga0209380_1038930413300027889SoilQAQRRASEAELAAARLAFEEDPAVKGLRERFGATVLPDTVRPVK
Ga0209006_1098967233300027908Forest SoilASMEDLDAARRAFESDPGVQGFRERFGATLLPDTVRPVK
Ga0209583_1072678713300027910WatershedsLARRAAEAEQAAAQRAFEEDPGVRGLRERFGATVLPETVRPVK
Ga0308309_1011008643300028906SoilRASDEELSVARRAFEEDAGVKGLRERFGATVLPDTVRPVK
Ga0311354_1014594153300030618PalsaQLASARESLESDPGVQALRERFGATLLPDSVRPIK
Ga0302310_1012176813300030737PalsaHASLAQLTAARESLESDPGVQALRERFGATLLTDTVRPIK
Ga0307499_1021978113300031184SoilQRAVVEEFDSARQALETDPAVRALRETFGATLLPDSVRPLK
Ga0307509_1055094813300031507EctomycorrhizaMEDLDAARRAFESDPGVQGLKERFGATLLPETIRPVK
Ga0318534_1006982743300031544SoilPDHAAARRAFEEDAGVKGLRERFGATVLPETVRPVK
Ga0318573_1009814513300031564SoilASEAELGAARRAFDEDAGVKGLRERFGAAVLPETVRPVK
Ga0310915_1070445533300031573SoilRRASEAELTAARRAFEEDPAVKGLRERFGATVLPETVRPVK
Ga0310686_11428536713300031708SoilQRASQQELDVARQAFETDPGVKTLRERFGATLLPDTVRPIK
Ga0318496_1043155613300031713SoilQRRASEAELAAARRAFEEDAGVKGLRERFGATVLPETVRPVK
Ga0318493_1014495513300031723SoilSQRRASEAELAAARRAFEEDAGVKGLRERFGATVLPETVRPVK
Ga0306918_1049945513300031744SoilASEAELTSARRAFDEDAGVKGLRERFGAAVLPETVRPVK
Ga0318521_1050324513300031770SoilQAQRRASEAELATARRAFDEDAGVKGLRERFGASVLPDTVRPLK
Ga0318552_1020455133300031782SoilAPAAARRAFEEDAGVKGLRERFGATVLPETVRPVK
Ga0318503_1008382013300031794SoilAETPAQAQRRASEAELGAARRAFDEDAGVKGLRERFGAAVLPETVRPVK
Ga0318576_1010522113300031796SoilEAELGAARRAFDEDAGVKGLRERFGAAVLPETVRPVK
Ga0318576_1017271613300031796SoilQAQRRASEAELASARRAFEEDAGVKGLRERFGATVLPDTVRPVK
Ga0318523_1006087543300031798SoilAELSAARRAFDEDAGVKGLREHFGAAVLPETVRPVK
Ga0318497_1003634913300031805SoilVAALAAARRAFEEDAGVKGLRERFGATVLPETVRPVK
Ga0318497_1043600933300031805SoilAELASARRAFEEDAGVKGLRERFGATVLPDTVRPVK
Ga0318568_1008663743300031819SoilAQRRASEAELAAARRAFEEDAGVKGLRERFGATVLPETVRPVK
Ga0318544_1043061713300031880SoilAQRRASEAELSSARRAFDEDAGVKGLRDRFGAAVLPETVRPVK
Ga0318522_1005456143300031894SoilASEAELTAARRAFDEDAGVKGLRERFGAAVLPETVRPVK
Ga0306923_1027212543300031910SoilAPPPRRARAAAPAAARRAFEEDAGVKGLRERFGATVLPETVRPVK
Ga0310912_1026186413300031941SoilAQRRASEAELATARRAFEEDAGVKGLRERFGATVLPDTVRPVK
Ga0310910_1079128613300031946SoilKRASEAELATARRAFDEDAGVKGLRERFGAAVLPETVRPVK
Ga0307479_1039060543300031962Hardwood Forest SoilSEAELTAARRSFDEDAGVKGLRERFGAAVLPETVRPVK
Ga0307479_1155294533300031962Hardwood Forest SoilQRRASEAELAAARLAFEEDAGVKGLRERFGATVLPETVRPVK
Ga0318563_1042083513300032009SoilQAQRRAEEARLAKARQAFEADPGVQGLRERFGATVLPDTVRPLK
Ga0318563_1078785023300032009SoilAELTAARRAFDEDAGVKGLRERFGAAVLPETVRPVK
Ga0318569_1020536613300032010SoilAQRRASEAELATARRAFDEDAGVKGLRERFGASVLPDTVRPVK
Ga0318507_1047655223300032025SoilELTSARRAFDEDAGVKGLRERFGAAVLPETVRPVK
Ga0318575_1021079513300032055SoilRASEAELATARRAFDEDAGVRGLRERFGATVLPETVRPVK
Ga0318513_1036414233300032065SoilRMHAARRAFEEDAGVKGLRERFGATVLPETVRPVK
Ga0318553_1055066813300032068SoilSEAELTAARRAFDEDAGVKGLRERFGAAVLPETVRPVK
Ga0307471_10048434443300032180Hardwood Forest SoilLLARRLTEAELAAARRAFESDPGVQGLRERFGATVLPESVRPVK
Ga0307471_10384035213300032180Hardwood Forest SoilQAQRRASEQDLAAARRAFDADPGVATLRERFGAAVLPDTVRPVK
Ga0306920_10176365613300032261SoilELESARRALEADPGVQGLRERFGATLLPETVRPVKS
Ga0335081_1078785533300032892SoilASDEELAAARRAFEDDAGVKGLRERFGATVLPETVRPVK
Ga0335075_1058619633300032896SoilQEEIESARRAFEADPGVQGFRDRFGATPLAETIRPVK
Ga0335076_1039229713300032955SoilLEDRDTARRAFESDPGVQGLRDRFGATLLPETVRPVK
Ga0335077_1036176013300033158SoilGDAETPALIARRASEAELAAARRAFEDDPGVKGLRERFGASVLPETVRPVK
Ga0310914_1129215833300033289SoilELAAARRAFEDDPAVKGLRERFGATVLPDSVRPVK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.