Basic Information | |
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Family ID | F096059 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 105 |
Average Sequence Length | 40 residues |
Representative Sequence | QRRASEAELAAARRAFEEDAGVKGLRERFGATVLPETVRPVK |
Number of Associated Samples | 99 |
Number of Associated Scaffolds | 105 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 91.43 % |
Associated GOLD sequencing projects | 95 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.57 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (72.381 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.524 % of family members) |
Environment Ontology (ENVO) | Unclassified (29.524 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (40.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 38.57% β-sheet: 0.00% Coil/Unstructured: 61.43% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.57 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Sediment Marine Watersheds Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Bulk Soil Surface Soil Switchgrass Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Soil Soil Soil Hardwood Forest Soil Soil Tropical Peatland Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Palsa Biofilm Weathered Mine Tailings Termite Gut Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Ectomycorrhiza Switchgrass Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Avena Fatua Rhizosphere Boreal Forest Soil Tropical Rainforest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
SwRhRL3b_0930.00001570 | 2162886006 | Switchgrass Rhizosphere | SLEEVEAAKRALEADPGAQALRERFGATLLPDTVRPLKN |
Ga0066823_101097542 | 3300005163 | Soil | AQRRASDSELAQARQAFEEDAGVKGLRERFGASVLPDSVRPVK* |
Ga0008090_157594913 | 3300005363 | Tropical Rainforest Soil | ASEAELAAARRAFEEDPAVKGLRERFGATVLPETVRPVK* |
Ga0070714_1014316791 | 3300005435 | Agricultural Soil | DQRVSQQELESARQAFDSDPGVQGLRERFGATLLPDTVRPVK* |
Ga0070733_105408711 | 3300005541 | Surface Soil | DQRVSQEEAESARRAFESDPGVQGFRDRFGATMVPETIRPVK* |
Ga0070665_1007279483 | 3300005548 | Switchgrass Rhizosphere | NLEELDSARQALESDPGVQALREKFGATLLPDSVRPLK* |
Ga0066656_102069384 | 3300006034 | Soil | ARRVSEQELAAARRTFEAEPGVQGLRERFGATVLPDSVRPVK* |
Ga0075441_101432123 | 3300006164 | Marine | AEQRASLEDLDSARRAFESDPGVQGLKERFGATLLPETVRPVK* |
Ga0075021_103337361 | 3300006354 | Watersheds | AQRRAAEQELAQARRAFDTDPGVKGLRERFGATVLPETVRPVK* |
Ga0079220_105327531 | 3300006806 | Agricultural Soil | PAQADQRVSQEEAEAARRAFESDPGVQGFRERFGATPVPETIRPVK* |
Ga0123356_102232201 | 3300010049 | Termite Gut | SPAQAAQSASQLELEAARRAFDTDPGVQGLRDRFGATVLPESVRPVK* |
Ga0126370_115256173 | 3300010358 | Tropical Forest Soil | ASEAELASARRAFEEDAGVKGLRDRFGATVLPDTVRPVK* |
Ga0126376_118291321 | 3300010359 | Tropical Forest Soil | RRASEAELTAARHAFDEDAGVKGLRERFGAAVLPETVRPVK* |
Ga0126372_111678963 | 3300010360 | Tropical Forest Soil | RATQQELSEARRAFDADPGVQGLRERFGATVLPDTVRPVK* |
Ga0134125_111319543 | 3300010371 | Terrestrial Soil | ERSSLEEIESARRAFEADPGVQGLRERFGATLLPDTVRPLKS* |
Ga0134128_124166043 | 3300010373 | Terrestrial Soil | SQQELEAARQAFESDPGVQGLRERFGATLLPDTVRPVK* |
Ga0105239_109175611 | 3300010375 | Corn Rhizosphere | DSARRALEADPGVQGLRERFGATLLPDTVRPLKSQE* |
Ga0136821_12511414 | 3300010387 | Sediment | QADAARQAFESDPGVRGFREQFAAEVMPETIRPQK* |
Ga0126344_13278882 | 3300010866 | Boreal Forest Soil | LDVARQAFETDPGVKSLRERFGATLLPDTIRPVK* |
Ga0137360_117639971 | 3300012361 | Vadose Zone Soil | QELDCARRAFEADPGVQGLRERFGATLLPETVRPVK* |
Ga0150984_1116324453 | 3300012469 | Avena Fatua Rhizosphere | EKRAVVEELDSARQLLESDPAVRALRDTFGATLLPDSVRPLK* |
Ga0137407_120485202 | 3300012930 | Vadose Zone Soil | AEQRASMEDLDAARRAFESDPGVQGLRERFGATLLPDTIRPVK* |
Ga0168317_10302911 | 3300012982 | Weathered Mine Tailings | QRVSQAELEAARQAFESDPGAQGLRERFGATLLPDTVRPVK* |
Ga0163163_115302353 | 3300014325 | Switchgrass Rhizosphere | VEELDSARQSLESDPAVRALRETFGATLLPDSVRPLK* |
Ga0132257_1001829601 | 3300015373 | Arabidopsis Rhizosphere | RRAARRAFEEDAGVKGLRERFGATVLPDTVRPVK* |
Ga0132255_1033156141 | 3300015374 | Arabidopsis Rhizosphere | PAQAQRSASEAELAAARRAFEDDAGVQSLRERFGATVLPDTVRPVK* |
Ga0182035_117490741 | 3300016341 | Soil | PAQAQRRASEAELTAARRAFDEDAGVKGLRERFGAAVLPETVRPVK |
Ga0182032_118296111 | 3300016357 | Soil | SEAELGAARRAFDEDAGVKGLRERFGAAVLPETVRPVK |
Ga0187785_105059213 | 3300017947 | Tropical Peatland | QRRASEEELAAARRAFEADPGVQGLRERFGATVLPESVRPVK |
Ga0187778_103462091 | 3300017961 | Tropical Peatland | EAELSAARRAFEEDPGVKGLRERFGATVLPDTVRPVK |
Ga0187783_107726101 | 3300017970 | Tropical Peatland | QRRASEAELVAARRAFEEDPAVKGLRERFGATVLPDTVRPVK |
Ga0187777_105508271 | 3300017974 | Tropical Peatland | AQRRASEEELAAARRAFEADPGVQGLRERFGATVLPESVRPLK |
Ga0187815_103267091 | 3300018001 | Freshwater Sediment | AGERASQEELEAARRAFESDPAVQGFRERFGAAPLPETIRPVK |
Ga0187770_100554216 | 3300018090 | Tropical Peatland | PALLARRASEAELAAAQRAFADDPGVRGLRERFGATVLSETVRPVK |
Ga0206356_105085361 | 3300020070 | Corn, Switchgrass And Miscanthus Rhizosphere | PAQAGERATQEEAEAARRAFESDPGVQGFRERFGATPLPETIRPLK |
Ga0187768_11271502 | 3300020150 | Tropical Peatland | RATQQELTEARRAFEADPGVQGLRERFGATVLPDTVRPVK |
Ga0210399_105381793 | 3300020581 | Soil | ELAAARRAFEADPGVQGLRERFGATVLPDSVRPVK |
Ga0210396_113293611 | 3300021180 | Soil | ELSVARRAFEADPNVQGLRERFGATVLPDTVRPVK |
Ga0210385_107504461 | 3300021402 | Soil | DEELASARRAFEDDAGVKGLRERFGATVLPDTVRPLK |
Ga0210386_106851051 | 3300021406 | Soil | RASQQELEAARQAFETDPGVKGLRERFGATLLPNTIRPVK |
Ga0213879_102450091 | 3300021439 | Bulk Soil | AQRASQQELAVARSAFEADPGVQGLRERFGATVLPDTVRPVK |
Ga0187846_101886773 | 3300021476 | Biofilm | AHAAQRASQQELTQARRAFETDPGVQGLRERFGATVLPDTVRPVK |
Ga0242669_11051402 | 3300022528 | Soil | AQRASQQELSSARRAFEADPGVQGLRERFGATVLPDTVRPLK |
Ga0207693_101182844 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | AQRRASEAELAAARRAFEEDAGVKGLRERFGATVLPDTVRPVK |
Ga0207694_104515673 | 3300025924 | Corn Rhizosphere | AEQRASQQELDNARQSFEADPGVQGLRERFGATLLPDTVRPVK |
Ga0207664_103668564 | 3300025929 | Agricultural Soil | AQRRASDTELAQARQAFEEDAGVKGLRERFGATVLPDSVRPVK |
Ga0207711_100847225 | 3300025941 | Switchgrass Rhizosphere | RASDTELAQARQAFEEDAGVKGLRERFGATVLPDSVRPVK |
Ga0207698_107930901 | 3300026142 | Corn Rhizosphere | SSQEEIDSARRALEADPGVQGLRERFGATLLPDTVRPLKSQE |
Ga0209057_10347056 | 3300026342 | Soil | VSEQELAAARRAFEADPGVQGLRERFGATVLPESVRPVK |
Ga0207815_10487781 | 3300027014 | Tropical Forest Soil | SETELAGARRAFEEDAGVKGLRERFGATVLPDTVRPVK |
Ga0209524_10152161 | 3300027521 | Forest Soil | EQELAAARRAFEADPGVQGLRERFGAAVLPDTVRPVK |
Ga0209419_10770551 | 3300027537 | Forest Soil | RRASEQELAAARRAFEADPGVQGLRERFGATVLPDSVRPVK |
Ga0208984_10084954 | 3300027546 | Forest Soil | RASEQELAAARRAFEADPGVQGLRERFGAAVLPDTVRPVK |
Ga0209815_11465572 | 3300027714 | Marine | AEQRASLEDLDSARRAFESDPGVQGLKERFGATLLPETVRPVK |
Ga0209693_105745812 | 3300027855 | Soil | DEELSVARRAFEEDAGVKGLRERFGATVLPDTVRPVK |
Ga0209167_101135314 | 3300027867 | Surface Soil | SDADLAVARQAFQEDPGVRGLRERFGATVLPETVRPVK |
Ga0209167_101987453 | 3300027867 | Surface Soil | ELTEVRRAFEADPGVQGLRERFGATVLPETVRPVK |
Ga0209465_100561481 | 3300027874 | Tropical Forest Soil | PAQAQRRATEAELSVARRAFDEDAGVKGLRERFGAAVLPETVRPVK |
Ga0209590_108148272 | 3300027882 | Vadose Zone Soil | RRARRVSEQELAAARRAFEADPGVQGLRERFGATVLTDSVRPVK |
Ga0209380_103893041 | 3300027889 | Soil | QAQRRASEAELAAARLAFEEDPAVKGLRERFGATVLPDTVRPVK |
Ga0209006_109896723 | 3300027908 | Forest Soil | ASMEDLDAARRAFESDPGVQGFRERFGATLLPDTVRPVK |
Ga0209583_107267871 | 3300027910 | Watersheds | LARRAAEAEQAAAQRAFEEDPGVRGLRERFGATVLPETVRPVK |
Ga0308309_101100864 | 3300028906 | Soil | RASDEELSVARRAFEEDAGVKGLRERFGATVLPDTVRPVK |
Ga0311354_101459415 | 3300030618 | Palsa | QLASARESLESDPGVQALRERFGATLLPDSVRPIK |
Ga0302310_101217681 | 3300030737 | Palsa | HASLAQLTAARESLESDPGVQALRERFGATLLTDTVRPIK |
Ga0307499_102197811 | 3300031184 | Soil | QRAVVEEFDSARQALETDPAVRALRETFGATLLPDSVRPLK |
Ga0307509_105509481 | 3300031507 | Ectomycorrhiza | MEDLDAARRAFESDPGVQGLKERFGATLLPETIRPVK |
Ga0318534_100698274 | 3300031544 | Soil | PDHAAARRAFEEDAGVKGLRERFGATVLPETVRPVK |
Ga0318573_100981451 | 3300031564 | Soil | ASEAELGAARRAFDEDAGVKGLRERFGAAVLPETVRPVK |
Ga0310915_107044553 | 3300031573 | Soil | RRASEAELTAARRAFEEDPAVKGLRERFGATVLPETVRPVK |
Ga0310686_1142853671 | 3300031708 | Soil | QRASQQELDVARQAFETDPGVKTLRERFGATLLPDTVRPIK |
Ga0318496_104315561 | 3300031713 | Soil | QRRASEAELAAARRAFEEDAGVKGLRERFGATVLPETVRPVK |
Ga0318493_101449551 | 3300031723 | Soil | SQRRASEAELAAARRAFEEDAGVKGLRERFGATVLPETVRPVK |
Ga0306918_104994551 | 3300031744 | Soil | ASEAELTSARRAFDEDAGVKGLRERFGAAVLPETVRPVK |
Ga0318521_105032451 | 3300031770 | Soil | QAQRRASEAELATARRAFDEDAGVKGLRERFGASVLPDTVRPLK |
Ga0318552_102045513 | 3300031782 | Soil | APAAARRAFEEDAGVKGLRERFGATVLPETVRPVK |
Ga0318503_100838201 | 3300031794 | Soil | AETPAQAQRRASEAELGAARRAFDEDAGVKGLRERFGAAVLPETVRPVK |
Ga0318576_101052211 | 3300031796 | Soil | EAELGAARRAFDEDAGVKGLRERFGAAVLPETVRPVK |
Ga0318576_101727161 | 3300031796 | Soil | QAQRRASEAELASARRAFEEDAGVKGLRERFGATVLPDTVRPVK |
Ga0318523_100608754 | 3300031798 | Soil | AELSAARRAFDEDAGVKGLREHFGAAVLPETVRPVK |
Ga0318497_100363491 | 3300031805 | Soil | VAALAAARRAFEEDAGVKGLRERFGATVLPETVRPVK |
Ga0318497_104360093 | 3300031805 | Soil | AELASARRAFEEDAGVKGLRERFGATVLPDTVRPVK |
Ga0318568_100866374 | 3300031819 | Soil | AQRRASEAELAAARRAFEEDAGVKGLRERFGATVLPETVRPVK |
Ga0318544_104306171 | 3300031880 | Soil | AQRRASEAELSSARRAFDEDAGVKGLRDRFGAAVLPETVRPVK |
Ga0318522_100545614 | 3300031894 | Soil | ASEAELTAARRAFDEDAGVKGLRERFGAAVLPETVRPVK |
Ga0306923_102721254 | 3300031910 | Soil | APPPRRARAAAPAAARRAFEEDAGVKGLRERFGATVLPETVRPVK |
Ga0310912_102618641 | 3300031941 | Soil | AQRRASEAELATARRAFEEDAGVKGLRERFGATVLPDTVRPVK |
Ga0310910_107912861 | 3300031946 | Soil | KRASEAELATARRAFDEDAGVKGLRERFGAAVLPETVRPVK |
Ga0307479_103906054 | 3300031962 | Hardwood Forest Soil | SEAELTAARRSFDEDAGVKGLRERFGAAVLPETVRPVK |
Ga0307479_115529453 | 3300031962 | Hardwood Forest Soil | QRRASEAELAAARLAFEEDAGVKGLRERFGATVLPETVRPVK |
Ga0318563_104208351 | 3300032009 | Soil | QAQRRAEEARLAKARQAFEADPGVQGLRERFGATVLPDTVRPLK |
Ga0318563_107878502 | 3300032009 | Soil | AELTAARRAFDEDAGVKGLRERFGAAVLPETVRPVK |
Ga0318569_102053661 | 3300032010 | Soil | AQRRASEAELATARRAFDEDAGVKGLRERFGASVLPDTVRPVK |
Ga0318507_104765522 | 3300032025 | Soil | ELTSARRAFDEDAGVKGLRERFGAAVLPETVRPVK |
Ga0318575_102107951 | 3300032055 | Soil | RASEAELATARRAFDEDAGVRGLRERFGATVLPETVRPVK |
Ga0318513_103641423 | 3300032065 | Soil | RMHAARRAFEEDAGVKGLRERFGATVLPETVRPVK |
Ga0318553_105506681 | 3300032068 | Soil | SEAELTAARRAFDEDAGVKGLRERFGAAVLPETVRPVK |
Ga0307471_1004843444 | 3300032180 | Hardwood Forest Soil | LLARRLTEAELAAARRAFESDPGVQGLRERFGATVLPESVRPVK |
Ga0307471_1038403521 | 3300032180 | Hardwood Forest Soil | QAQRRASEQDLAAARRAFDADPGVATLRERFGAAVLPDTVRPVK |
Ga0306920_1017636561 | 3300032261 | Soil | ELESARRALEADPGVQGLRERFGATLLPETVRPVKS |
Ga0335081_107878553 | 3300032892 | Soil | ASDEELAAARRAFEDDAGVKGLRERFGATVLPETVRPVK |
Ga0335075_105861963 | 3300032896 | Soil | QEEIESARRAFEADPGVQGFRDRFGATPLAETIRPVK |
Ga0335076_103922971 | 3300032955 | Soil | LEDRDTARRAFESDPGVQGLRDRFGATLLPETVRPVK |
Ga0335077_103617601 | 3300033158 | Soil | GDAETPALIARRASEAELAAARRAFEDDPGVKGLRERFGASVLPETVRPVK |
Ga0310914_112921583 | 3300033289 | Soil | ELAAARRAFEDDPAVKGLRERFGATVLPDSVRPVK |
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