NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F096032

Metagenome / Metatranscriptome Family F096032

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096032
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 39 residues
Representative Sequence SLTGNCEKTNIPKTINIRDITQATTGLLILTSVIYI
Number of Associated Samples 90
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.05 %
% of genes from short scaffolds (< 2000 bps) 96.19 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (75.238 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(25.714 % of family members)
Environment Ontology (ENVO) Unclassified
(64.762 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(83.810 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.00%    β-sheet: 0.00%    Coil/Unstructured: 50.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF16576HlyD_D23 61.90
PF00581Rhodanese 5.71
PF12700HlyD_2 1.90
PF00873ACR_tran 0.95
PF01625PMSR 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG0225Peptide methionine sulfoxide reductase MsrAPosttranslational modification, protein turnover, chaperones [O] 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A75.24 %
All OrganismsrootAll Organisms24.76 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001955|GOS2237_1055632All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter615Open in IMG/M
3300002913|JGI26060J43896_10043993All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1287Open in IMG/M
3300003494|JGI26240J51127_1066293Not Available551Open in IMG/M
3300005931|Ga0075119_1070520Not Available816Open in IMG/M
3300006024|Ga0066371_10161967Not Available689Open in IMG/M
3300006024|Ga0066371_10274703Not Available528Open in IMG/M
3300006166|Ga0066836_10555455Not Available695Open in IMG/M
3300006190|Ga0075446_10142741Not Available685Open in IMG/M
3300006308|Ga0068470_1887763Not Available622Open in IMG/M
3300006332|Ga0068500_1793963Not Available620Open in IMG/M
3300006351|Ga0099953_1424770Not Available971Open in IMG/M
3300006357|Ga0075502_1180559Not Available571Open in IMG/M
3300006413|Ga0099963_1337213Not Available799Open in IMG/M
3300006565|Ga0100228_1425026Not Available513Open in IMG/M
3300007692|Ga0102823_1082741Not Available852Open in IMG/M
3300007778|Ga0102954_1077365Not Available926Open in IMG/M
3300007862|Ga0105737_1170492Not Available570Open in IMG/M
3300007962|Ga0102907_1079752Not Available863Open in IMG/M
3300007981|Ga0102904_1029988All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1221Open in IMG/M
3300008253|Ga0105349_10339605Not Available625Open in IMG/M
3300008961|Ga0102887_1105182Not Available889Open in IMG/M
3300009054|Ga0102826_1076250Not Available803Open in IMG/M
3300009074|Ga0115549_1133681Not Available813Open in IMG/M
3300009172|Ga0114995_10176179All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1190Open in IMG/M
3300009172|Ga0114995_10605509Not Available599Open in IMG/M
3300009409|Ga0114993_11148795Not Available548Open in IMG/M
3300009420|Ga0114994_11007869Not Available538Open in IMG/M
3300009425|Ga0114997_10169102All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1278Open in IMG/M
3300009425|Ga0114997_10527160Not Available627Open in IMG/M
3300009425|Ga0114997_10687941Not Available535Open in IMG/M
3300009436|Ga0115008_10811265Not Available686Open in IMG/M
3300009447|Ga0115560_1094160All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1240Open in IMG/M
3300009476|Ga0115555_1169524Not Available909Open in IMG/M
3300009476|Ga0115555_1228343Not Available761Open in IMG/M
3300009481|Ga0114932_10268674Not Available1026Open in IMG/M
3300009496|Ga0115570_10453256Not Available540Open in IMG/M
3300009508|Ga0115567_10972768Not Available502Open in IMG/M
3300009526|Ga0115004_10222453All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1127Open in IMG/M
3300009705|Ga0115000_10274923All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1094Open in IMG/M
3300009705|Ga0115000_10324021Not Available993Open in IMG/M
3300009706|Ga0115002_10813547Not Available652Open in IMG/M
3300009706|Ga0115002_11064486Not Available552Open in IMG/M
3300009785|Ga0115001_10069832All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique2307Open in IMG/M
3300009786|Ga0114999_11190648Not Available544Open in IMG/M
3300009786|Ga0114999_11355047Not Available502Open in IMG/M
3300010883|Ga0133547_10375050All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique2918Open in IMG/M
3300010883|Ga0133547_10546431All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique2329Open in IMG/M
3300010883|Ga0133547_10803725All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1847Open in IMG/M
3300010883|Ga0133547_11104281All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1524Open in IMG/M
3300012928|Ga0163110_11587383Not Available532Open in IMG/M
3300012952|Ga0163180_11793414Not Available521Open in IMG/M
3300016771|Ga0182082_1060585Not Available740Open in IMG/M
3300017730|Ga0181417_1113188Not Available657Open in IMG/M
3300017951|Ga0181577_10461768Not Available799Open in IMG/M
3300017964|Ga0181589_10936832Not Available530Open in IMG/M
3300017986|Ga0181569_10986390Not Available544Open in IMG/M
3300018039|Ga0181579_10281444Not Available938Open in IMG/M
3300018424|Ga0181591_11026135Not Available559Open in IMG/M
3300019765|Ga0194024_1014980All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1637Open in IMG/M
3300020014|Ga0182044_1059354Not Available501Open in IMG/M
3300020194|Ga0181597_10402821Not Available574Open in IMG/M
3300020194|Ga0181597_10454638Not Available523Open in IMG/M
3300020317|Ga0211688_1037362Not Available1005Open in IMG/M
3300020353|Ga0211613_1010155All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter2138Open in IMG/M
3300020376|Ga0211682_10193764Not Available791Open in IMG/M
3300020395|Ga0211705_10068554All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1278Open in IMG/M
3300020396|Ga0211687_10263447Not Available685Open in IMG/M
3300020419|Ga0211512_10428774Not Available594Open in IMG/M
3300020425|Ga0211549_10321487Not Available628Open in IMG/M
3300020426|Ga0211536_10053450All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1598Open in IMG/M
3300020438|Ga0211576_10224661Not Available993Open in IMG/M
3300020450|Ga0211641_10415410Not Available648Open in IMG/M
3300020451|Ga0211473_10505947Not Available615Open in IMG/M
3300020454|Ga0211548_10171700Not Available1048Open in IMG/M
3300020459|Ga0211514_10681818Not Available500Open in IMG/M
3300020463|Ga0211676_10214635Not Available1153Open in IMG/M
3300020474|Ga0211547_10105203All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1479Open in IMG/M
3300020475|Ga0211541_10153128All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1136Open in IMG/M
3300021378|Ga0213861_10247582Not Available942Open in IMG/M
3300021379|Ga0213864_10224539Not Available954Open in IMG/M
3300021961|Ga0222714_10530619Not Available599Open in IMG/M
3300021964|Ga0222719_10543980Not Available687Open in IMG/M
3300023081|Ga0255764_10418325Not Available575Open in IMG/M
(restricted) 3300024324|Ga0233443_1086594All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1229Open in IMG/M
3300025547|Ga0209556_1050468Not Available1035Open in IMG/M
3300025699|Ga0209715_1240380Not Available538Open in IMG/M
3300025707|Ga0209667_1090917Not Available994Open in IMG/M
3300026123|Ga0209955_1045805Not Available901Open in IMG/M
3300026257|Ga0208407_1251599Not Available501Open in IMG/M
3300027838|Ga0209089_10667579Not Available537Open in IMG/M
3300028134|Ga0256411_1100508Not Available984Open in IMG/M
3300028196|Ga0257114_1077460All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1399Open in IMG/M
3300028196|Ga0257114_1229134Not Available671Open in IMG/M
3300028489|Ga0257112_10081542All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1184Open in IMG/M
3300031142|Ga0308022_1116999Not Available786Open in IMG/M
3300031637|Ga0302138_10054939All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1533Open in IMG/M
3300031659|Ga0307986_10088511All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1523Open in IMG/M
3300031696|Ga0307995_1120274Not Available1002Open in IMG/M
3300031702|Ga0307998_1165956Not Available767Open in IMG/M
3300031775|Ga0315326_10229051All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1220Open in IMG/M
3300031775|Ga0315326_10419991Not Available867Open in IMG/M
3300032006|Ga0310344_10254680All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1497Open in IMG/M
3300032011|Ga0315316_11176009Not Available617Open in IMG/M
3300032011|Ga0315316_11502866Not Available530Open in IMG/M
3300032360|Ga0315334_11629882Not Available551Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine25.71%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine16.19%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh9.52%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine6.67%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater4.76%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine4.76%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine3.81%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine3.81%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.81%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater2.86%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine1.90%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.90%
WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water1.90%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.95%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.95%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.95%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.95%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.95%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine0.95%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.95%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.95%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.95%
Methane Seep MesocosmEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm0.95%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater0.95%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface0.95%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001955Marine microbial communities from Gulf of Panama, Panama - GS021EnvironmentalOpen in IMG/M
3300002913Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LVEnvironmentalOpen in IMG/M
3300003494Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_150m_DNAEnvironmentalOpen in IMG/M
3300005931Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK9EnvironmentalOpen in IMG/M
3300006024Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_BEnvironmentalOpen in IMG/M
3300006166Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91EnvironmentalOpen in IMG/M
3300006190Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNAEnvironmentalOpen in IMG/M
3300006308Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500mEnvironmentalOpen in IMG/M
3300006332Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200mEnvironmentalOpen in IMG/M
3300006351Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0045mEnvironmentalOpen in IMG/M
3300006357Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006413Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0025mEnvironmentalOpen in IMG/M
3300006565Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125mEnvironmentalOpen in IMG/M
3300007692Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743EnvironmentalOpen in IMG/M
3300007778Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MGEnvironmentalOpen in IMG/M
3300007862Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_0.2umEnvironmentalOpen in IMG/M
3300007962Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02EnvironmentalOpen in IMG/M
3300007981Estuarine microbial communities from the Columbia River estuary - metaG 1556A-3EnvironmentalOpen in IMG/M
3300008253Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson CanyonEnvironmentalOpen in IMG/M
3300008961Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02EnvironmentalOpen in IMG/M
3300009054Estuarine microbial communities from the Columbia River estuary - metaG S.737EnvironmentalOpen in IMG/M
3300009074Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009425Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009447Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509EnvironmentalOpen in IMG/M
3300009476Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407EnvironmentalOpen in IMG/M
3300009481Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaGEnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300009526Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300012952Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 MetagenomeEnvironmentalOpen in IMG/M
3300016771Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412BT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017730Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017964Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017986Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018039Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018424Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019765Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MGEnvironmentalOpen in IMG/M
3300020014Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011503CT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020194Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020317Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)EnvironmentalOpen in IMG/M
3300020353Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)EnvironmentalOpen in IMG/M
3300020376Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121)EnvironmentalOpen in IMG/M
3300020395Marine microbial communities from Tara Oceans - TARA_B100000427 (ERX555987-ERR599133)EnvironmentalOpen in IMG/M
3300020396Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)EnvironmentalOpen in IMG/M
3300020419Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)EnvironmentalOpen in IMG/M
3300020425Marine microbial communities from Tara Oceans - TARA_B100001765 (ERX556083-ERR598964)EnvironmentalOpen in IMG/M
3300020426Marine microbial communities from Tara Oceans - TARA_B100000378 (ERX555992-ERR599112)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020450Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)EnvironmentalOpen in IMG/M
3300020451Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)EnvironmentalOpen in IMG/M
3300020454Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)EnvironmentalOpen in IMG/M
3300020459Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)EnvironmentalOpen in IMG/M
3300020463Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)EnvironmentalOpen in IMG/M
3300020474Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)EnvironmentalOpen in IMG/M
3300020475Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)EnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021379Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247EnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300023081Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaGEnvironmentalOpen in IMG/M
3300024324 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_200_MGEnvironmentalOpen in IMG/M
3300025547Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_150m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025699Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 (SPAdes)EnvironmentalOpen in IMG/M
3300025707Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_165m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026123Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026257Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300028134Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_12 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028196Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10mEnvironmentalOpen in IMG/M
3300028489Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1000mEnvironmentalOpen in IMG/M
3300031142Marine microbial communities from water near the shore, Antarctic Ocean - #353EnvironmentalOpen in IMG/M
3300031637Marine microbial communities from Western Arctic Ocean, Canada - CBN3_32.1EnvironmentalOpen in IMG/M
3300031659Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82EnvironmentalOpen in IMG/M
3300031696Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262EnvironmentalOpen in IMG/M
3300031702Marine microbial communities from David Island wharf, Antarctic Ocean - #37EnvironmentalOpen in IMG/M
3300031775Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315EnvironmentalOpen in IMG/M
3300032006Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MGEnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GOS2237_105563223300001955Marine*TTGG*IPSGNSLTGSYEKTNIPKIIKTKDITHATTGLLILTSVKYI*
JGI26060J43896_1004399313300002913MarineSGNSLTGNCEKTNIPKTINIRDITQATTGLLILTSVIYI*
JGI26240J51127_106629313300003494MarinePSGNSLTGNCEKTNIPKTINIRDITQATTGLLILTSVIYI*
Ga0075119_107052023300005931Saline LakeSLTGNCEKTNIPKTINIRDITQATTGLLILTSVIYI*
Ga0066371_1016196723300006024MarineGWRPAGSSRTGNFEKTNIPNTTKINENTQATTGLLILTSVIYIFIIY*
Ga0066371_1027470323300006024MarineTGNFEKTNIPNITRINDNTQATTGLLMLISVKYIII*
Ga0066836_1055545523300006166MarineSSLTGNFEKINIPNTTKIRDNTQATTGLLMLTSVKYIIYLLV*
Ga0075446_1014274123300006190Marine*TTGGCKPSGNSLTGNFEKTNIPKTINIRDITQATTGLLMLTSVIYI*
Ga0068470_188776313300006308MarineEGNSLTGNCQNTNIPNTIKIREHTQATTGLLMLKSVIYIIS*
Ga0068500_179396313300006332MarineSRTGNSEKTNTPKIINIKDITHATTGRLILTSVIYI*
Ga0099953_142477023300006351MarineIKDRSKKTKIPKIINIKDITQATTGRLMLTSVIYI*
Ga0075502_118055923300006357AqueousGSSRTGNSEKTNIPNIIKIRDMTHATTGRLILTSVIYI*
Ga0099963_133721313300006413MarineTGNSKKTKIPKIINIKDMTQATTGRLILTSVIYI*
Ga0100228_142502623300006565MarineSRTGSSEKTKTPNIIKIKDITQATTGRLILTSVIYI*
Ga0102823_108274113300007692EstuarineTGNSKKTKIPNTINIRDITHATTGLLILTSVIYIIF*
Ga0102954_107736523300007778WaterPSGSSRTGNSEKTNIPNIIKIRDMTHATTGRLILTSVIYI*
Ga0105737_117049213300007862Estuary WaterNSLTGNFEKTKIPKKTRIRDITHATTGLLILTSVIYIIL*
Ga0102907_107975223300007962EstuarineLTGNCEKTNIPKTINIRDITQATTGLLILTSVINIIF*
Ga0102904_102998813300007981EstuarineNCEKTNIPKTINIRDITQATTGLLILTSVINIIF*
Ga0105349_1033960513300008253Methane Seep MesocosmNFKKTKIPNTIKIRDNTQETTGLLILTSVKYIICL*
Ga0102887_110518223300008961EstuarineSGNSLTGNCEKTNIPKTINIRDITQATTGLLILTSVINIIF*
Ga0102826_107625023300009054EstuarineGNSKKTKIPNTINISDITHATTGLLILTSVIYIIF*
Ga0115549_113368123300009074Pelagic MarineSLTGNCEKTNIPKTINIRDITQATTGLLILTSVINIIF*
Ga0114995_1017617913300009172MarineGNCEKTNIPKTINIRDITHATTGLLILTSVINIIF*
Ga0114995_1060550923300009172MarineGNSLTGNCEKTNIPNTINIRDITQATTGLLILTSVINIIF*
Ga0114993_1114879523300009409MarineLICTTGGCNPLGSSLTGSFEKTNIPKTINIRDITQATTGLLILTSVIYIIF*
Ga0114994_1100786913300009420MarineNSLTGSLEKTNIPNTINIRDITQATTGLLILTSVINIIFL*
Ga0114997_1016910233300009425MarineKPSGNSLTGSLEKTNIPNTINIRDITQATTGLLILTSVINIIFL*
Ga0114997_1052716023300009425MarineSGNSLTGSLEKTNIPNTINIRDITHATTGLLILTSVINIIF*
Ga0114997_1068794113300009425MarineTGNCEKTNIPKTINIRDITHATTGLLILTSVINIIF*
Ga0115008_1081126523300009436MarineNSLTGNCEKTNIPKTINIRDITQATTGLLILTSVINIIF*
Ga0115560_109416013300009447Pelagic MarineRTGNSEKTNIPNIIKIRDMTHATTGRLMLTSVIYI*
Ga0115555_116952423300009476Pelagic MarineTTGGCKPSGSSLTGNCEKTNIPKTINIRDITQATTGLLILISVINIIF*
Ga0115555_122834323300009476Pelagic MarineGNCEKTNIPKTINIRDITHATTGLLILTSVTNIIF*
Ga0114932_1026867413300009481Deep SubsurfaceGNSLTGSFEKTNIPKTINIRDITHATTGLLILTSVIYIIIYL*
Ga0115570_1045325623300009496Pelagic MarineNSEKTNIPKTINIRDITQATTGLLMLTSVIYIIF*
Ga0115567_1097276813300009508Pelagic MarineSLTGSSQKTKPPNIIRIRDITHATTGLRILTSVINIFI*
Ga0115004_1022245313300009526MarineTGNCEKTNKPKTINIRDITHATTGLLILTSVINIIF*
Ga0115000_1027492313300009705MarineTGSLEKTNIPNTINIRDITHATTGLLMLTSVINIIF*
Ga0115000_1032402123300009705MarineTTGGCKPSGNSLTGSLEKTNIPNTINIRDITQATTGLLILTSVINIIF*
Ga0115002_1081354713300009706MarineTTGGCKPSGNSLTGSLEKTNIPNTINIRDITHATTGLLILTSVINIIF*
Ga0115002_1106448613300009706MarineNFEKTNIPKTINIRDITHATTGLLILTSVIYIIF*
Ga0115001_1006983213300009785MarineGGCKPSGNSLTGNCEKTNIPKMINIRDITHATTGLLILKSVINIIF*
Ga0114999_1119064813300009786MarineGSLEKTNKPKTTSIIEKTAATTGLLILSSVMYIII*
Ga0114999_1135504713300009786MarineNCEKTNMPKTINIRDITHATTGLLILTSVINIIF*
Ga0133547_1037505053300010883MarineLTGNCEKTNIPKTINIRDITHATTGLLILTSVINIIF*
Ga0133547_1054643143300010883MarineSGNSLTGSLEKTNIPNTINIRDITHATTGLLILTSVINIIS*
Ga0133547_1080372533300010883MarineSLTGSLEKTNIPNTINIRDITHATTGLLILTSVINIIF*
Ga0133547_1110428133300010883MarineTGSLEKTNIPNTINIRDITHATTGLLILTSVINIIF*
Ga0163110_1158738313300012928Surface SeawaterTGSSANTNIPKIISIKDITQATTGRLILTSVIYI*
Ga0163180_1179341413300012952SeawaterPSGSSRTGNSRKTKIPKIINIKDITQATTGRLMLTSVIYI*
Ga0182082_106058513300016771Salt MarshRTGNSEKTNIPNIIKIRDMTHATTGRLILTSVIYI
Ga0181417_111318813300017730SeawaterTTGGXIPSGSSLTGNSEKTNIPKIIKINDMTQATTGRLILTSVIYI
Ga0181577_1046176813300017951Salt MarshTXTTGGXIPSGSSRTGNSEKTNIPNIIKIRDMTHATTGRLMLTSVIYI
Ga0181589_1093683223300017964Salt MarshVXTXTTGGXIPSGSSRTGNSEKTNIPNIIKIRDMTHATTGRLILTSVIYI
Ga0181569_1098639023300017986Salt MarshSLTGNSEKTNTPKIINIKDITQATTGRLILTSVIYI
Ga0181579_1028144423300018039Salt MarshPSGSSRTGNSEKTNIPNIIKIRDMTHATTGRLILTSVIYI
Ga0181591_1102613513300018424Salt MarshGSSRTGNSEKTNIPNIIKIRDMTHATTGRLILTSVIYI
Ga0194024_101498033300019765FreshwaterSVXTXTTGGXIPSGSSRTGNSEKTNIPNIIKIRDMTHATTGRLILTSVIYI
Ga0182044_105935423300020014Salt MarshRTGNSEKTNIPNIIKIRDMTHATTGRLMLTSVIYI
Ga0181597_1040282113300020194Salt MarshSGSSRTGNSEKTNIPNIIKIRDMTHATTGRLILTSVIYI
Ga0181597_1045463823300020194Salt MarshXTXTTGGXIPSGSSRTGNSEKTNIPNIIKIRDMTHATTGRLMLTSVIYI
Ga0211688_103736213300020317MarineNSLTGSCEKTNIPKTINIRDITHATTGLLILTSVINIIF
Ga0211613_101015543300020353MarineSLTGNFQKTKIPNTIKINEKTHATVGLLILTSVIYIFIFL
Ga0211682_1019376413300020376MarineNSLTGNCEKTNIPKTINIRDITHATTGLLILTSVINIIF
Ga0211705_1006855413300020395MarineGGCIPSGSSRTGNSKKTKIPKIINIKDMTQATTGRLMLTSVIYI
Ga0211687_1026344723300020396MarineSLTGNCEKTNIPKTINIRDITQATTGLLMLKSVINIIF
Ga0211512_1042877423300020419MarineTTGGXIPSGSSLTGNSEKTNIPKIIKIKDMTQATTGLLILTSVIYI
Ga0211549_1032148713300020425MarineEGSSLTGNFQKTNIPKTISIRDITQDTTGLLMLTSVIYI
Ga0211536_1005345013300020426MarinePSGSSRTGNSKKTKIPKIINIKDITQATTGRLMLTSVIYI
Ga0211576_1022466123300020438MarineSGSSLTGSSEKTNIPKIIKIKDMTQATTGRLILTSVIYI
Ga0211641_1041541013300020450MarineGSSRTGSSEKTNIPKIIKINDMTQATTGRLILTSVIYI
Ga0211473_1050594713300020451MarineSLTGNFENTNIPNTTKISDNTHATTGLLILKSVIYIWLI
Ga0211548_1017170013300020454MarinePFGSSLTGNSEKTKIPNTIKTRDITHATTGLLILKSVIYIKLTLKLV
Ga0211514_1068181813300020459MarineIPSGSSLTGNSEKTNIPKIIKINDMTQATTGRLILTSVIYI
Ga0211676_1021463523300020463MarineXIPSGSSRTGSSEKTNIPKIIKIKDMTQATTGRLILTSVTNI
Ga0211547_1010520313300020474MarineCTIGGCIPEGSSRTGSLENTNNPNTIKIKDKTQATTGLLILTSVKYIFIFLLD
Ga0211541_1015312833300020475MarineLTGNSAKTKIPKIININDITQATTGLFMLTSVIYI
Ga0213861_1024758213300021378SeawaterSRTGNSEKTNIPNIIKIRDMTHATTGRLMLTSVIYI
Ga0213864_1022453923300021379SeawaterTGGXIPSGSSRTGNSEKTNIPNIIKIRDMTHATTGRLILTSVIYI
Ga0222714_1053061913300021961Estuarine WaterGSSRTGNSEKTNIPNIIKIRDMTHATTGRLMLTSVIYI
Ga0222719_1054398013300021964Estuarine WaterTGSSQNTKPPNIIRIRDITHATTGLRILTSVINIFI
Ga0255764_1041832523300023081Salt MarshGSSLTGNSKKTKIPKIINIKDMTQATTGRLILTSVIYI
(restricted) Ga0233443_108659433300024324SeawaterLTGNCEKTNIPKTINIRDITHATTGLLILISVINIIF
Ga0209556_105046823300025547MarineSGSSLTGNCEKTNIPKTINIRDITQATTGLLILISVINIIF
Ga0209715_124038023300025699Pelagic MarineLTGNSEKTNIPNTIKISDITQATTGLLILISVIYIIS
Ga0209667_109091723300025707MarineSLTGSCEKTNIPKTINIRDITHATTGLLILISVINIIF
Ga0209955_104580513300026123WaterGSSQKTKPPNIINIKDITHATTGLRILTSVINIFIL
Ga0208407_125159913300026257MarineNTNNPKTIKIRDNTHATTGLLMLTSVIYIVILFIF
Ga0209089_1066757913300027838MarineTGGCKPEGSSLTGSLEKTNKPKMTSIIEKTIATTGLLILTSVIYIF
Ga0256411_110050813300028134SeawaterTGNFEKTKIPKTTRIRDITHATTGLLILTSVIYIIL
Ga0257114_107746033300028196MarineLTGSSEYTNKPNTISIKDRTQATTGRFILTSVMYI
Ga0257114_122913423300028196MarineTGNCEKTNIPKTINIRDITQATTGLLILTSVINIIF
Ga0257112_1008154233300028489MarineTGSFQKTNIPKTIKIKEKTDETTGLFILKSVIYIN
Ga0308022_111699913300031142MarineTGNCEKTNIPKTINIRDITHATTGLLILTSVINIIFL
Ga0302138_1005493913300031637MarineGSCEKTNIPKTINIRDITHATTGLLILISVINIIF
Ga0307986_1008851113300031659MarineSLTGNCEKTNIPKTINIRDITHATTGLLILISVINIIF
Ga0307995_112027413300031696MarineNSLTGNCEKTNIPKTINIRDITQATTGLLILTSVIYI
Ga0307998_116595613300031702MarineTGNWEKTNIPKTINIRDITHATTGLLILTSVINIIF
Ga0315326_1022905133300031775SeawaterSLTGNFEKTNKPKTTSIIEKTTATTGLLILSSVMYIIV
Ga0315326_1041999113300031775SeawaterSLTGNFEKTNIPKTINIRDITQATTGLLILTSVKYIIF
Ga0310344_1025468033300032006SeawaterLTGNFQKTKIPNTIKIRDKTHATTGLLMLTSVKYI
Ga0315316_1117600913300032011SeawaterGSFEKTNIPKTINIRDITQATTGLLILTSVIYIIF
Ga0315316_1150286623300032011SeawaterGCNPLGSSLTGSFEKTNIPKTINIRDITQATTGLLMLTSVIYIIF
Ga0315334_1162988213300032360SeawaterGGXIPSGSSLTGSSEKTNIPKIIKIKDMTQATTGRLILTSVIYI


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