Metagenome / Metatranscriptome Family F096024

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F096024
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	73 residues
Representative Sequence	MLSKFAATVLLSIVVFIVVTLFVSLGVLWWTGEGTRSVLIGVICGAVAVLTVRAVSWYGRWGERSGDEHERSREGRDR
Number of Associated Samples	47
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.10 %
% of genes near scaffold ends (potentially truncated)	22.86 %
% of genes from short scaffolds (< 2000 bps)	85.71 %
Associated GOLD sequencing projects	45
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (51.429 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (40.000 % of family members)
Environment Ontology (ENVO)	Unclassified (43.810 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.381 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.66% β-sheet: 0.00% Coil/Unstructured: 44.34%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF06897	DUF1269	39.05
PF00582	Usp	4.76
PF01435	Peptidase_M48	4.76
PF03992	ABM	2.86
PF04960	Glutaminase	1.90
PF01594	AI-2E_transport	1.90
PF13340	DUF4096	0.95
PF00196	GerE	0.95
PF03729	DUF308	0.95
PF03631	Virul_fac_BrkB	0.95
PF13334	DUF4094	0.95
PF12680	SnoaL_2	0.95
PF07228	SpoIIE	0.95
PF13358	DDE_3	0.95
PF00999	Na_H_Exchanger	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG4803	Uncharacterized membrane protein	Function unknown [S]	39.05
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.90
COG2066	Glutaminase	Amino acid transport and metabolism [E]	1.90
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.95
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.95
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.95
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.95
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	0.95
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.95
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.38 %
Unclassified	root	N/A	47.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.43 %
Unclassified	root	N/A	47.62 %
Viruses	superkingdom	All Organisms → Viruses	0.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.43 %
Unclassified	root	N/A	47.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.62 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	23.81 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.62 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	8.57 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8.57 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.90 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.62 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	8.57 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.90 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.62 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	8.57 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.90 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.62 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	3.81 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	2.86 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.90 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	0.95 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.62 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	3.81 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	2.86 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.90 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	0.95 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000858\|JGI10213J12805_10664527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1301	Open in IMG/M
3300001431\|F14TB_101343980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	562	Open in IMG/M
3300001686\|C688J18823_10957026	Not Available	543	Open in IMG/M
3300002568\|C688J35102_118777283	All Organisms → cellular organisms → Bacteria → Terrabacteria group	595	Open in IMG/M
3300002568\|C688J35102_120322215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	989	Open in IMG/M
3300002568\|C688J35102_120984786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	5915	Open in IMG/M
3300004016\|Ga0058689_10026816	Not Available	971	Open in IMG/M
3300004463\|Ga0063356_103877936	All Organisms → cellular organisms → Bacteria → Terrabacteria group	644	Open in IMG/M
3300005562\|Ga0058697_10042854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1706	Open in IMG/M
3300005562\|Ga0058697_10406933	Not Available	676	Open in IMG/M
3300005562\|Ga0058697_10444123	All Organisms → cellular organisms → Bacteria → Terrabacteria group	652	Open in IMG/M
3300005562\|Ga0058697_10458970	Not Available	643	Open in IMG/M
3300005562\|Ga0058697_10499667	Not Available	621	Open in IMG/M
3300005562\|Ga0058697_10575646	Not Available	585	Open in IMG/M
3300005981\|Ga0081538_10004483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12859	Open in IMG/M
3300005981\|Ga0081538_10164994	All Organisms → cellular organisms → Bacteria → Terrabacteria group	977	Open in IMG/M
3300006169\|Ga0082029_1129945	Not Available	916	Open in IMG/M
3300006894\|Ga0079215_10806194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	656	Open in IMG/M
3300007004\|Ga0079218_13912057	Not Available	506	Open in IMG/M
3300007790\|Ga0105679_10230597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1486	Open in IMG/M
3300007790\|Ga0105679_10509792	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1832	Open in IMG/M
3300007790\|Ga0105679_10854859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1247	Open in IMG/M
3300009156\|Ga0111538_10715445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1269	Open in IMG/M
3300009789\|Ga0126307_10078534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2604	Open in IMG/M
3300009789\|Ga0126307_10083652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2519	Open in IMG/M
3300009789\|Ga0126307_10088810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	2443	Open in IMG/M
3300009789\|Ga0126307_10248931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1428	Open in IMG/M
3300009789\|Ga0126307_10915729	Not Available	708	Open in IMG/M
3300009840\|Ga0126313_10092543	All Organisms → cellular organisms → Bacteria	2210	Open in IMG/M
3300009840\|Ga0126313_10278448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1303	Open in IMG/M
3300009840\|Ga0126313_10504083	All Organisms → cellular organisms → Bacteria → Terrabacteria group	969	Open in IMG/M
3300009840\|Ga0126313_11004689	Not Available	683	Open in IMG/M
3300009840\|Ga0126313_11315286	Not Available	598	Open in IMG/M
3300010036\|Ga0126305_10129512	Not Available	1550	Open in IMG/M
3300010037\|Ga0126304_10383961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	937	Open in IMG/M
3300010038\|Ga0126315_10015657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	3708	Open in IMG/M
3300010038\|Ga0126315_10033522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2690	Open in IMG/M
3300010038\|Ga0126315_10146621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1394	Open in IMG/M
3300010038\|Ga0126315_11000112	Not Available	560	Open in IMG/M
3300010039\|Ga0126309_10008954	All Organisms → cellular organisms → Bacteria	4047	Open in IMG/M
3300010039\|Ga0126309_10945601	Not Available	574	Open in IMG/M
3300010040\|Ga0126308_10177109	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1361	Open in IMG/M
3300010040\|Ga0126308_10298969	Not Available	1057	Open in IMG/M
3300010040\|Ga0126308_10493844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	826	Open in IMG/M
3300010040\|Ga0126308_10521273	Not Available	805	Open in IMG/M
3300010040\|Ga0126308_10550060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	784	Open in IMG/M
3300010040\|Ga0126308_10905295	Not Available	615	Open in IMG/M
3300010040\|Ga0126308_10992220	Not Available	588	Open in IMG/M
3300010040\|Ga0126308_11260881	Not Available	524	Open in IMG/M
3300010040\|Ga0126308_11343155	Not Available	508	Open in IMG/M
3300010041\|Ga0126312_10021875	Not Available	4272	Open in IMG/M
3300010041\|Ga0126312_10069236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2377	Open in IMG/M
3300010041\|Ga0126312_10179188	All Organisms → cellular organisms → Bacteria	1477	Open in IMG/M
3300010041\|Ga0126312_10422425	Not Available	949	Open in IMG/M
3300010041\|Ga0126312_10575849	Not Available	808	Open in IMG/M
3300010041\|Ga0126312_11124864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300010042\|Ga0126314_10299892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1147	Open in IMG/M
3300010042\|Ga0126314_10595039	Not Available	807	Open in IMG/M
3300010044\|Ga0126310_10046689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2381	Open in IMG/M
3300010044\|Ga0126310_10056972	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2199	Open in IMG/M
3300010044\|Ga0126310_10413960	Not Available	963	Open in IMG/M
3300010044\|Ga0126310_10558712	Not Available	846	Open in IMG/M
3300010044\|Ga0126310_10867907	Not Available	700	Open in IMG/M
3300010045\|Ga0126311_10577734	Not Available	888	Open in IMG/M
3300010146\|Ga0126320_1013992	All Organisms → cellular organisms → Bacteria → Terrabacteria group	590	Open in IMG/M
3300010146\|Ga0126320_1344009	All Organisms → cellular organisms → Bacteria → Terrabacteria group	905	Open in IMG/M
3300010166\|Ga0126306_10749030	Not Available	786	Open in IMG/M
3300010395\|Ga0058701_10331487	Not Available	922	Open in IMG/M
3300014487\|Ga0182000_10496654	Not Available	566	Open in IMG/M
3300014487\|Ga0182000_10558155	Not Available	545	Open in IMG/M
3300014487\|Ga0182000_10619136	Not Available	525	Open in IMG/M
3300014487\|Ga0182000_10653575	Not Available	514	Open in IMG/M
3300014488\|Ga0182001_10342331	Not Available	625	Open in IMG/M
3300017965\|Ga0190266_10822270	All Organisms → cellular organisms → Bacteria → Terrabacteria group	599	Open in IMG/M
3300018432\|Ga0190275_10184176	Not Available	1960	Open in IMG/M
3300018432\|Ga0190275_10275244	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300018432\|Ga0190275_10485807	All Organisms → Viruses → Predicted Viral	1266	Open in IMG/M
3300018432\|Ga0190275_11435856	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300018432\|Ga0190275_11932434	All Organisms → cellular organisms → Bacteria → Terrabacteria group	669	Open in IMG/M
3300018432\|Ga0190275_13257059	Not Available	525	Open in IMG/M
3300018432\|Ga0190275_13388952	All Organisms → cellular organisms → Bacteria → Terrabacteria group	516	Open in IMG/M
3300018465\|Ga0190269_11551566	Not Available	549	Open in IMG/M
3300018466\|Ga0190268_10616103	Not Available	774	Open in IMG/M
3300018466\|Ga0190268_11033952	Not Available	659	Open in IMG/M
3300018466\|Ga0190268_11519822	Not Available	583	Open in IMG/M
3300018466\|Ga0190268_11935204	Not Available	539	Open in IMG/M
3300018469\|Ga0190270_11239485	Not Available	786	Open in IMG/M
3300018476\|Ga0190274_11239953	All Organisms → cellular organisms → Bacteria → Terrabacteria group	831	Open in IMG/M
3300018920\|Ga0190273_11798009	Not Available	558	Open in IMG/M
3300019377\|Ga0190264_10266436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1008	Open in IMG/M
3300019767\|Ga0190267_10730705	Not Available	643	Open in IMG/M
3300019767\|Ga0190267_10900866	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300028578\|Ga0272482_10264752	All Organisms → cellular organisms → Bacteria → Terrabacteria group	546	Open in IMG/M
3300028754\|Ga0307297_10003114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4022	Open in IMG/M
3300030496\|Ga0268240_10007675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1728	Open in IMG/M
3300030496\|Ga0268240_10156217	Not Available	565	Open in IMG/M
3300030510\|Ga0268243_1001443	All Organisms → cellular organisms → Bacteria	3808	Open in IMG/M
3300031091\|Ga0308201_10293881	All Organisms → cellular organisms → Bacteria → Terrabacteria group	576	Open in IMG/M
3300031824\|Ga0307413_11309612	All Organisms → cellular organisms → Bacteria → Terrabacteria group	634	Open in IMG/M
3300031901\|Ga0307406_10787901	All Organisms → cellular organisms → Bacteria → Terrabacteria group	801	Open in IMG/M
3300031995\|Ga0307409_101337810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	742	Open in IMG/M
3300032159\|Ga0268251_10249633	Not Available	717	Open in IMG/M
3300032159\|Ga0268251_10407285	Not Available	590	Open in IMG/M
3300032159\|Ga0268251_10598336	Not Available	507	Open in IMG/M
3300032159\|Ga0268251_10605935	Not Available	504	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.90%
Host-Associated	Host-Associated	18.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.00%
Plants	Host-Associated → Plants	18.10%
Aquatic	Environmental → Aquatic	1.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.00%
Phylloplane	Host-Associated → Plants → Phylloplane	10.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.81%
Freshwater	Environmental → Aquatic → Freshwater	1.90%
Roots	Host-Associated → Plants → Roots	1.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.95%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.38%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	10.48%
Loam	Environmental → Terrestrial → Soil → Loam	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.81%
Sand	Environmental → Terrestrial → Soil → Sand	2.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.90%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.95%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	68.57%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	10.48%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.81%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	2.86%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.90%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	1.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.95%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	40.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.00%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	10.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.62%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	2.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.86%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.90%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	1.90%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.95%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.95%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.95%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010395	Agave microbial communities from Guanajuato, Mexico - Or.Ma.e	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300028578	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10213J12805_106645273	3300000858	Soil	MRSRFAATVLLSIGVFIVVSLFVSLGVLWWSGDATRGVRIGVICGAVALFAVGAVSWAGRSGERSGDEHERSGGRRDR*
F14TB_1013439802	3300001431	Soil	MRTRFAATVLLSIVVFIVVTLFVSLGVLWWTGDGTRSVLIGVICGAVAVLMVRAVSWYGRSGERSGDDD*
C688J18823_109570262	3300001686	Soil	VVTLFVSLGVLWWTGDGTRSVLVGVICGAIAVLAVRAASWYGRRSGKRSGEEHERSRGRQGH*
C688J35102_1187772832	3300002568	Soil	MLSKFAATVLLSIVVFIVVTLFVSLGVLWWTGDGTRSVLVGVICGAIAVLAVRAASWYG
C688J35102_1203222151	3300002568	Soil	MLSKFAATVLLSIVVFIAVTLFVSLGVLWWTGEGTRSVLIGVICGTIAVLTVRAVSWYGRAGERSGDEHERS
C688J35102_1209847868	3300002568	Soil	MRARFASTVMLSIVVFIVVALFVSVGVLWWTGDGTRSVLIGVICGVVAILTVRAASWYGRSGERPGDAHDRSRHGHDR*
Ga0058689_100268162	3300004016	Agave	MRSRLAATVLLSIGVFIVVSLFVSLGVLWWSGDASRGVRIGVISGALAVFAVGAVSWVGRSGERSGDEHERSGGGWDR*
Ga0063356_1038779361	3300004463	Arabidopsis Thaliana Rhizosphere	MLSKFAATVLLSIVVLIGVTLFVSLGVLWWTGDGTRSVLIGVICGAVAVLTVRAVSWYGRSGERSGDEHERSRDGGDR*
Ga0058697_100428542	3300005562	Agave	MRSRLAATVLLSIGVFILVSLFVSLGVLWWSGDATRGVRIGVISGALAVFAVSAVSWYGRSGERSGDEHERSGGRRDS*
Ga0058697_104069332	3300005562	Agave	MRSRLAATVLLSIGVFIVVSLFVSLGVLWWSGDATRGVRIGVICGAVAVFAVRAVSWYGRY*
Ga0058697_104441231	3300005562	Agave	MLSKFASTVLLSIVVLIVVTLFVSLGVLWWTGEGTRSVLIGVLCGAVAVFTVRAVSWYGRSGGRSGDEHERSQDGRDRWAGLK
Ga0058697_104589701	3300005562	Agave	MRSRLAATVLLSIGVFIVVTLFVSLGVLWWSGDATRGVRLGVICGAVAVLAVIAVSWYGRSGERSGDEHERSREGQDR*
Ga0058697_104996672	3300005562	Agave	MRSRLAATVLLSIGVFIVVSLFVSLGVLWWSGDATRGVRIGVICGALAVFAVSAVSWYGRSGERSGDEHERSGGGQDH*
Ga0058697_105756462	3300005562	Agave	MLSNFAATVLLSMVVLIVVTLFVSLGVLWWTGDGTRSVLIGVICGTVAVLTVRAASWAGRSGKRSGDVD*
Ga0081538_1000448313	3300005981	Tabebuia Heterophylla Rhizosphere	MLARIAATVLLSIILFIVVTLFVSLVLLWWSGDVIRSVLIGVICGCAAAVTVGAVNTAYGQSEEHSSDEHERSPDGHDR*
Ga0081538_101649942	3300005981	Tabebuia Heterophylla Rhizosphere	MLSKFAATVLLSIIVFIVVTLFVSLIVLWWTGEGTRSVLIGVICGTVAVLTVRAVSWYGRSGERSGDEHE*
Ga0082029_11299451	3300006169	Termite Nest	MRSKLAATVLLSIGVFIVVTLFVSLGVLWWSGDATRSVLIGVICGALAVLAVRAVSWYGRFGERPGDEEHERSRGGHES*
Ga0079215_108061943	3300006894	Agricultural Soil	MLSIVVLIVVTLFVSLGMLWWTGDGTRSVLIGVTCGTVAVFTVRAVIWAGRSGERSGAEHERPRDGHDR*
Ga0079218_139120571	3300007004	Agricultural Soil	MLSKFAATVLLSIVVLIVVTLFVSLGVLWWTGDGTRSVLIGVICGTVAVFTVRAVSWAGRSGERSGYEHERSRDGHDR*
Ga0105679_102305972	3300007790	Soil	MRSRFAATVLFSIGVFIAVTLFVSVGVLWWAGDATRGVRIGATCGAVAVLAVVAASKGGTSS*
Ga0105679_105097922	3300007790	Soil	MRSRFSATALFSIGVFIVVTLFVSVGVLWWTRDATQRVRAGAICGAVAVFVVGAASKGDTPS*
Ga0105679_108548592	3300007790	Soil	MLSKFAATVLLSIVVLIVVTLFASLGVLWWTGDGTRSVLIGVICGAVAVLAVRAVSWYGRSGEHSGDED*
Ga0111538_107154453	3300009156	Populus Rhizosphere	MISKFAATVLLSIVVFIAVTLFVSLGVLWWTGEGTRSVLIGVICGAVAVLAVRAVSWYGRWGESSDDEHERSRDGQDG*
Ga0126307_100785344	3300009789	Serpentine Soil	MCSRLAATVLLSIGVFIVVSLFVSLGVLWWSGDATRGVRMGVICGAVAVLTVRAASWYGRSGERSGDEHERSRGGRDR*
Ga0126307_100836523	3300009789	Serpentine Soil	MLSKFAATVLLSIVVFIVVTLFVSLGVLWWTGEGTRSVLIGVICGTVAVFTVRAVSWYGRSRERPGDEHERSRGGHDS*
Ga0126307_100888104	3300009789	Serpentine Soil	MLARFAATVLLSIGVFIVVLLFVSLGLLWLTGDGTRGVRIGVICGAVAVFTVSAVSWAGRSGERSGDEHDRSRGGRER*
Ga0126307_102489313	3300009789	Serpentine Soil	MLSKFAATVLLSIVVLIVVTLFVSLGVLWWTGDGTRSVLIGVICGVVAVLTVRAVSWYGRSGERSGDED*
Ga0126307_109157292	3300009789	Serpentine Soil	MRTRISGTVMLSIVVLIVVTLFVSVGMLWWTGDGTRSVLIGVTCGMVAVFTIRAVSWAGRSGDRSGAEHERSRDGHDR*
Ga0126313_100925433	3300009840	Serpentine Soil	MLSKFAATVLLFIVVTLFVSLGVLWWTGEGTRSVLIGVICGTVAVFTVRAASRYGRWGERSGDEHERSREGKDR*
Ga0126313_102784481	3300009840	Serpentine Soil	MLSKFAATVLLSIVVLIGVTLFVSLGVFWWTGDGTRSVLIGVICGAVAVLTVRAVSWYGRSGERSGDED*
Ga0126313_105040833	3300009840	Serpentine Soil	MLARIAATVLLSIGVFIVVLLFVSLGLLWLTGDGTRGVRIGVICGAVAVFTVSAVSWAGRSGERSGDEHERSRGGRER*
Ga0126313_110046892	3300009840	Serpentine Soil	MRARLASTVMLSIVVFIVVTLFVSVGVLWWTGDGTRSVLIGVICGVVAILTARAVSWYGRSGERSGDEHERSRDGHDR*
Ga0126313_113152861	3300009840	Serpentine Soil	MLSKFAATVLLSIVVLIVVTLCVSLGVLWWTGDGTRSVLIGVICGAVAVLAVRAVSWYGRSGERSGDED*
Ga0126305_101295122	3300010036	Serpentine Soil	VLLSIGVFIVVSLFVSLGLLWWTVDATRGVRIGVISGAVAVITVSAVSWAGRSGERSGDEHERSRGGRDR*
Ga0126304_103839612	3300010037	Serpentine Soil	AATVLLSIGVFIVVLLFVSLGLLWLTGDGTRGVRIGVICGAVAVFTVSAVSWAGRSGERSGDEHERSRGGRER*
Ga0126315_100156571	3300010038	Serpentine Soil	MLARIAATVLLSIGVFIVVLLFVSLGLLWLTGDGTRGVRIGVICGAVAVFTVSAVSWAGRSGERSGDEHERSRG
Ga0126315_100335225	3300010038	Serpentine Soil	MRSRLAATVLLSIGVFIVVSLFVSLGVLWWSGDATRGVRIGVISGALAVFAVGAVSWVGRSGERSGDEHERSGGGWDRGVGLRKPSKYTTLFAIHPTS*
Ga0126315_101466212	3300010038	Serpentine Soil	MRSRLAATVLLSIGVFIVVSLFVSLGVLWWSGDATRGVRMGVICGAVAVLTVRAASWYGRSGERSGDEHERSRGGRDR*
Ga0126315_110001122	3300010038	Serpentine Soil	MRTRIAGTVMLSIVVLIVVTLFVSVGMLWWTGDGTRSVLIGVTCGMVAVFTIRAVSWAGRSGDRSSDEHRRSRDGHDR*
Ga0126309_100089542	3300010039	Serpentine Soil	MLSKFAATVLLSIVVFIVVTLFVSLGVLWWTGNGTRSVLIGVTCGAVAVLALRAASWYGRSGERPGDEHERSRGGHDS*
Ga0126309_109456012	3300010039	Serpentine Soil	MRARLASTVMLSIVVFIVVTLFVSVGVLWWTGDGTRSVLIGGICGVVAVLTVRAVSWYGRSGERSGD*
Ga0126308_101771092	3300010040	Serpentine Soil	MLSKFAATVLLSIVVLIVVTLLVSLGVLWWTGDGTRSVLIGVICGTVAVFTVRAVSWAGRSGERSGDEHERSRDGRDR*
Ga0126308_102989692	3300010040	Serpentine Soil	AATVLLSIGVFIVVTLFVSLGLLWWSGDATRGVRIGVISGAVAVLTVSAVSWAGRTGERSDDEHERSRGGRDRGVGLRKP*
Ga0126308_104938442	3300010040	Serpentine Soil	MHSRLAATVLLSIGVFIVVTLFVSLGVLWWTGDSTRGVRIGVICGAVAVITVSAVSWAGRSGERSGDEHERSRGGRDR*
Ga0126308_105212731	3300010040	Serpentine Soil	TKRASSGNCSIRYGATVMLSIVVFIVVTLFVGLGVLWWTGDGTRGVLIGVICGTVAAFMVSTVGTIIGRSGERSGDERERSRDGHGR*
Ga0126308_105500602	3300010040	Serpentine Soil	MLARIAATVMLSIVVTIVVTLIAGLGALWWTGDGSRAVLIGVICGTVAAFTVGAVGTAIGQSEERSGDEHERSRDGHDR*
Ga0126308_109052952	3300010040	Serpentine Soil	MRSRFAATVLLSIGVFIVVSLFVSLGLLWWTGDATRGVRIGVISGAVAVFTVSAVSWAGRSGERSGDEHERSRGG
Ga0126308_109922201	3300010040	Serpentine Soil	MLSKGAATVLLSIVVFIVVTLFVSLRVLWWTGEGTRSVLIGVICATVAVLTVRAVSWYGRSGERSGEEHERSREGHDR*
Ga0126308_112608811	3300010040	Serpentine Soil	LFVSLGVLWWSGDATRGVRLGVICGAVAVFAVRAVSIAGRSGGRSDDEHERSREGQDR*
Ga0126308_113431551	3300010040	Serpentine Soil	MRSRLAATVLLSIGVFIVVSLFVSLGVLWWSGDATRGVRIGVICGAVAVLAVGAVSWAGRLGERSGDEHERSGGRRDG*
Ga0126312_100218756	3300010041	Serpentine Soil	MCSRLAATVLLSIGVFIVVTLFVSLGLLWWTGEGTRSVLIGVICGTVAVLTVRAVSWYGRSGGRSGDEHQGSRGGRDR*
Ga0126312_100692362	3300010041	Serpentine Soil	MRSRLAATVLLSIGVFIVVSLFVSLGVLWWSGDATRGVRIGVISGALAVFAVGAVSWVGRSGERSGDEHERSGGGWDR*
Ga0126312_101791881	3300010041	Serpentine Soil	LSIVVFIVVTLFVGLGVLWWTGDGTRGVLIGVICGTVAAFTVSTVGTIIGRSGERSGDERERSRDGHGR*
Ga0126312_104224252	3300010041	Serpentine Soil	MLSIVVFIVVTLFVSVGVLWWTGDGTRSVLIGVICGVVAILTVRAVSWYGRSGERSGDEHERSRDGHDR*
Ga0126312_105758492	3300010041	Serpentine Soil	MRSRFAATVLLSIGVFIVVTLFVSLGLLWWSGDATRGVRIGVISGAVAVLTVSAVSWAGRTGERSDDEHERSRGGRDRGVGLRKP*
Ga0126312_111248641	3300010041	Serpentine Soil	GTVMLSIVVLIVVTLFVSVGMLWWTGDGTRSVLIGVTCGMVAVFTIRAVSWAGRSGERSGAEHERSRDGHDR*
Ga0126314_102998921	3300010042	Serpentine Soil	MLARIAATVLLSIGVFIVVLLFVSLGLLWLTGDGTRGVRIGVICGAVAVFTVSAVSWAGRSGERSGDEHDRSRGGRER*
Ga0126314_105950393	3300010042	Serpentine Soil	MLSIVVFIVVTLFVSVGVLWWTGEGTRSVLIGVICAMVAVLTVRAVSWYGRSGERSGEEHERSREGH
Ga0126310_100466893	3300010044	Serpentine Soil	MLSKFAATVLLSIVVFIVVTLFVSLGVLWWTGVGTRSVLIGVICGAVAVLTVRAVSWYGRSGERPGDEHERSRSS*
Ga0126310_100569722	3300010044	Serpentine Soil	MRSRLAATVLLSIGVFIVVTLFVSLGVLWWSGEGTRSVLIGAICGVVAVLSVRAVSWYGRLGERPGDED*
Ga0126310_104139602	3300010044	Serpentine Soil	MLARFAATVLLSIGVFIVVLLFVSLGLLWLTGDGTRGIRIGVICGAVAVFTVSAVSWAGRSGERSGDEHDRSRGGRER*
Ga0126310_105587122	3300010044	Serpentine Soil	MRSRLAATVLLSIGVFIVVTLFVSLGVLWWSGDATRGVRIGVISGAVAVLTVSAVSWAGRTGERSDDEHERYRGGRDRGVGLRKP*
Ga0126310_108679071	3300010044	Serpentine Soil	VFIVVTLFVSLRVLWWTGEGTRSVLIGVICATVAVLTVRAVSWYGRSGERPGDEHERSRGGHDS*
Ga0126311_105777342	3300010045	Serpentine Soil	MLSKFAATVLLSIVVFIVVTLFVSLGVLWWTGEGTRSVLIGVICGTVAVFTVRAVSWYGRSGERPGDEHERSRGGHDS*
Ga0126320_10139921	3300010146	Soil	MRSRLAATVLLSIGVFIVVTLFVSLGVLWWSGDATRGVRIGVICGAVAVFAVSAVSWAGRSGGRSGDED*
Ga0126320_13440091	3300010146	Soil	MLSKFAATVLLSIVVFIVVTLFVSLGVLWWTGEGTRSVLIGVICGAVAVLTVRAVSWYGRWGERSGDEHERSREGRDR
Ga0126306_107490302	3300010166	Serpentine Soil	IVVTLFVSLGVLWWTGDATRGVLIGVICGTVAVFTVRAVSWYGRSGERPGDEHERSRGGPDS*
Ga0058701_103314872	3300010395	Agave	MLSKFAATVLLSIVVFIVVTLFVSLGVLWWTGDGTRSVLIGVICGAIAVLAVRAASWY
Ga0182000_104966542	3300014487	Soil	MRSRLAATVLLSIGVFIVVTLFVSVGVLWWSGDATRGVLIGVICGAVAVFAVRAVSWYGRSGERSGDEHERSREGQDR*
Ga0182000_105581551	3300014487	Soil	MRSRLAATVLLSIGVFIVVTLFVSLGVLWWSGEGSRSVLIGVICGAVAVFAVRAVSWYGRSGERPGDEHERSGDGHDR*
Ga0182000_106191361	3300014487	Soil	MRSRLAATVLLSIGGFIAVTLFVSLGVLWWSGDATRGVRIGVICGAVAVFAVRAVSWYGRY*
Ga0182000_106535752	3300014487	Soil	ATVLLSIGVFIVVTLFVSLGVLWWSRDATRGVRIGVICGAVAVITVSAVSWAGRTGERSDDEHERSGGGRDR*
Ga0182001_103423312	3300014488	Soil	MLSKFAATVLLSIVVFIVVSLFVSLVVLWWTGEGTRSVLIGVICGAVAVLTVRAVSWYGRSGERSGDEHERSREGQDR*
Ga0190266_108222702	3300017965	Soil	MLSKFAATVLLSIVVLIGVTLFVSLGVLWWTGDGTRSVLIGVICGAVAVLTVRAVSWYGRSGERSGDEHERSPDGRDR
Ga0190275_101841763	3300018432	Soil	VMLSIVVFIVVTLFVSVGVLWWTGDGTRSVLIGVICGVVAVLTVRAVSWYGRSGERSGDEHERSRDGHDR
Ga0190275_102752443	3300018432	Soil	MLSKFAATVLLSIVVLIVVTLFVSLGVLWWTGDGTRSVLIGVICGAVAVLSVRAVSWYGRWGERSGDED
Ga0190275_104858072	3300018432	Soil	VMLSIVVFIVVTLFVSVGVLWWSGDGTRSVLIGVICGVVAVLTVRAVSWYGRSGERSGDE
Ga0190275_114358562	3300018432	Soil	LSFSKQFRKGYSPKFAATVLLSIVVLIVVTLFVSLGVLWWTGDGTRSVLIGVICGAVAVLTVRAVSWYERSGERSGDED
Ga0190275_119324342	3300018432	Soil	MLSKFAATVLLSIVVLIVVTLFVSLGVLWWTGDGSRSVLIGVICGAVAVLSVRAMSWYGR
Ga0190275_132570592	3300018432	Soil	MRARLASTVMLSIVVFIVVTLFVSLGVLWWTGDGTRSVLIGVICGVVAVLTVRAMSWYGRSGERSADEHERSRDGHDR
Ga0190275_133889521	3300018432	Soil	VLLSIVVLIVVTLFVSLGVLWWTSDGTQSVLIGVICGMVAVLTVHAVSWARRSGERSGDEHERSRH
Ga0190269_115515662	3300018465	Soil	MLSKFAATVLLSIVVLIVVTLFVSLGLLWWTGNGTRSVLIGVICGTVAVLTVRAVSWYGRSGERPGDDD
Ga0190268_106161031	3300018466	Soil	MIARIAGTVILSAIVFVVVSLLVSLGVLWWSGDASRGVRIGVISGALAVFAVGAVSWVGRSGERSGDEHERSGGGWDR
Ga0190268_110339521	3300018466	Soil	MLSKFAATMLLSIVVLIGVTLFVSLGVLWWTGDGTRSVLIGVICGAVAVLTVRAVSWYGRWGESSGDED
Ga0190268_115198222	3300018466	Soil	MRSRFAATVLLSIGVFIVVTLFVSLGVLWWTGDGTRSVLIGVICGVVAVLTVRTVSWYGRSGERSGDEHERSGDGRDR
Ga0190268_119352041	3300018466	Soil	MLSKFAATVLLSIVVLIGVTLFVSLGVLWWTGDGTRSVLIGVICGAVAVLTVRAVSWYGRSGERSGDED
Ga0190270_112394851	3300018469	Soil	TVMLSIVVFIVVTLFVSVGVLWWTGDGTRSVLIGVICGVVAVLTVRAVSWYGRSGERSGDEHERSRDGHDR
Ga0190274_112399532	3300018476	Soil	MLSKFAATVLLSIVVLIVVTLFVSVGVLWWSGDGTRSVLIGVICGVVAVLTVRTVSWYGRSGERSGDEHERSGDGRDR
Ga0190273_117980091	3300018920	Soil	MRARLASTVMLSIVVFIVVTLFVSVGVLWWSGDGTRSVLIGVICGVVAVLTVRAVSWYGRSGESSGDEHERSRDGHDR
Ga0190264_102664362	3300019377	Soil	MLSKFAATVLLSIVVLIVVTLFVSLGVLWWTGDGTRSVLIGVICGTVAVFTVRAVSWAGRSGERSGAEHERPRDGHDR
Ga0190267_107307052	3300019767	Soil	MLSKFAATVLLSIVMFIAVTLFVSLGVLWWTGEGTRSVLIGVICGAVAVLTVRAVSWYGRWGERSGKVHERSRDGRER
Ga0190267_109008661	3300019767	Soil	ATVLLSIVVFIVVTLFVSLGVLWWTGEGTRSVLIGVICGTVAVLTVRAVSWYGRLGERSDDEHERSRGGRDR
Ga0272482_102647521	3300028578	Soil	MLSKFAATVLLSIVVLIVVTLFVSLGMLWWTGDGTRSVLIGVICGTVAVLTVRAVSWYGRSGKRSGDED
Ga0307297_100031144	3300028754	Soil	MRSRLAATVLLSIGVFIVVTLFVSLGVMWLSGDATRGVRIGVICGAVAVIAVRAVSWYGRSGGRSG
Ga0268240_100076753	3300030496	Soil	LLSIVVFIVVTLFVSLGVLWWTGEGTRSVLIGVICGTVAVLTVRAVSWYGRSGERSGDEHERSRAGHDR
Ga0268240_101562171	3300030496	Soil	MLSNFAATVLLSMVVLIVVTLFVSLGVLWWTGDGTRSVLIGVICGTVAVLTVRAASWAGRLGKRSGDVD
Ga0268243_10014436	3300030510	Soil	MRSRLAATVLLSIGVFIVVSLFVSLGVLWWSGDASRGVRIGVISGALAVFAVGAVSWVGRSGERSGDEHERSGGGWDR
Ga0308201_102938812	3300031091	Soil	MRSRLAATVLLSIGVFIVVTLLVSLGVLWLSGDATRGVRIGVICGAVAVIAVRAVSWYGRSGGRSG
Ga0307413_113096122	3300031824	Rhizosphere	MRSRLAATVLLSIGVFIVVSLFVSVGVVWWTGDATRGVRIGVICGTVAVITVIAVSWAGRSGEHSGGEHERSRGGRDR
Ga0307406_107879011	3300031901	Rhizosphere	MLSIVVFIVVTLFVGLGVLWWTGDGTRGVLIGVICGTVAAFTVSTVGTIIGRSGERSGDERERSRDGHGR
Ga0307409_1013378101	3300031995	Rhizosphere	MLSIVVLIVVTLFVSVGMLWWTGDGTRSVLIGVTCGMVAVFTIRAVSWAGRSGDRSGAEHERSRDGHDR
Ga0268251_102496332	3300032159	Agave	MRSRLAATVLLSIGVFIVVTLFVSLGVLWWSGDATRGVRLGVICGAVAVLAVIAVSWYGRSGERSGDEHERSREGQDR
Ga0268251_104072851	3300032159	Agave	MRSRLAATVLLSIGVFIVVSLFVSLGVLWWSGDATRGVRIGVICGAVAVFAVRAVSWYGR
Ga0268251_105983362	3300032159	Agave	MLSKFASTVLLSIVVLIVVTLFVSLGVLWWTGEGTRSVLIGVICGAVAVLTVRAVSWYGRWGERSGDEHERTRKGRGR
Ga0268251_106059351	3300032159	Agave	MLSNFAATVLLSMVVLIVVTLFVSLGVLWWTGDGTRSVLIGVICGTVAVLTVRAASWAGRSGKRSGDVD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096024

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences