Metagenome / Metatranscriptome Family F096022

Overview

Basic Information

• Family ID: F096022
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 105
• Average Sequence Length: 48 residues
• Representative Sequence: VENEEDKGQIEQRVKALTGRAKVEVLAVRKVLDADGRTRSFEVDIR
• Number of Associated Samples: 91
• Number of Associated Scaffolds: 105

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 6.67 %
• % of genes from short scaffolds (< 2000 bps): 6.67 %
• Associated GOLD sequencing projects: 85
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (98.095 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (13.333 % of family members)
• Environment Ontology (ENVO): Unclassified (40.952 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (66.667 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 16.22%
  β-sheet: 21.62%
  Coil/Unstructured: 62.16%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF03548	LolA	20.00
PF04055	Radical_SAM	5.71
PF00005	ABC_tran	1.90
PF13023	HD_3	1.90

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG2834	Outer membrane lipoprotein-sorting protein	Cell wall/membrane/envelope biogenesis [M]	20.00

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
All Organisms	root	All Organisms	1.90 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
cellular organisms	root	All Organisms → cellular organisms	1.90 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.90 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.90 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.90 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	1.90 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	1.90 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	0.95 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.95 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.10 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.95 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.95 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300003993|Ga0055468_10235655	Not Available	572
3300005294|Ga0065705_10865287	Not Available	587
3300005354|Ga0070675_101557164	Not Available	610
3300006173|Ga0070716_100307824	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1105
3300012989|Ga0164305_11211677	Not Available	655
3300020078|Ga0206352_10073658	Not Available	643
3300031548|Ga0307408_100245694	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1473

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.38%
Host-Associated	Host-Associated	47.62%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.48%
Plants	Host-Associated → Plants	45.71%
Aquatic	Environmental → Aquatic	1.90%
Human	Host-Associated → Human	1.90%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.24%
Marine	Environmental → Aquatic → Marine	1.90%
Digestive System	Host-Associated → Human → Digestive System	1.90%
Roots	Host-Associated → Plants → Roots	0.95%
Phylloplane	Host-Associated → Plants → Phylloplane	0.95%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.33%
Loam	Environmental → Terrestrial → Soil → Loam	17.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	17.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.43%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.71%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.90%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.90%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.95%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	17.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	17.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.86%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.86%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.90%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.95%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.95%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.95%

Habitat

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	13.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.76%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.81%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.86%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.86%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.90%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.95%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.95%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2162886011	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated
3300006169	Termite nest microbial communities from Madurai, India	Environmental
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental
3300010122	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental
3300012212	Combined assembly of Hopland grassland soil	Host-Associated
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental
3300025796	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)	Environmental
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental
3300034663	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R1 (Metagenome Metatranscriptome)	Environmental
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MRS1b_0776.00001270	2162886011	Miscanthus Rhizosphere	ETDKGQIEQRVKELTGRKQVEVVAVRRVVGEDGKTRSFEVDIR
ICChiseqgaiiFebDRAFT_124039251	3300000363	Soil	VENEADKGQIEQRVKALTGRAKVEVLEVRKVLDADGRTRSFEVDIR*
INPhiseqgaiiFebDRAFT_1017640014	3300000364	Soil	IGNEEDKGQIEERVKALTGRSNVEVLAVRKITHPDGRARGFEVDIR*
JGI25612J43240_10032731	3300002886	Grasslands Soil	GQIGEQIKALTGRAEVEVVAVRKVVGSDGRTISFEVDIR*
Ga0055468_102356552	3300003993	Natural And Restored Wetlands	ATTLVLSPEVVVNEGDKAQIEQQVRALTGRTTFEVVAVRRVLDTEGRTRSFEVDIR*
Ga0062595_1005712051	3300004479	Soil	PEIVGNEADRGQIEQRVKALTGRVNVEVVAVRRVVDSEGRTRSFEVDIR*
Ga0062595_1007562381	3300004479	Soil	PEVVGNEEDKGRIEQQIKALTGRTDVEVLAVRKVLDPSGKIRSFEVDIR*
Ga0062592_1021404931	3300004480	Soil	SPEVIGSEEDKSQIEQHVKALTGRTDVEVVAVRKVLDPEGRTRSFEVDIR*
Ga0062591_1016259712	3300004643	Soil	VGNEQDKGQIAQRIKELTGRSEVEVLAVRKITDSNGQTRSFEVDIR*
Ga0058860_116875841	3300004801	Host-Associated	VVVNESDTGQIEQRIRALTGRSKAEVVAVRKVVGPDGRAVSFEVDIK*
Ga0058860_121010802	3300004801	Host-Associated	NEEDKGRIEQQVRALTGRTDAEVLAVRKITGPDGRTLSFEVDIR*
Ga0065704_107102602	3300005289	Switchgrass Rhizosphere	TLLLPPEVIGNEEDKGQIEQRVKALTGRTNVEVLAVRKITHPDGRARGFEVDIR*
Ga0065704_107688741	3300005289	Switchgrass Rhizosphere	TLVLSPEGIVNEADRGQIEQRVRSLTGRASAEVVAVRKVVGPDGRTVGFEVDIK*
Ga0065705_108652871	3300005294	Switchgrass Rhizosphere	RTLVFSPEVIGNEADKLQIEQRVKALTGRTEIEVVEVRKILDPDGKTRSFEVDIR*
Ga0070676_102434312	3300005328	Miscanthus Rhizosphere	MEHQRPIATKVFLKPEVVVNEADRGQIEQQVRVLTGRSSVEILAVRKVLDTNGRTVSFEVDIR*
Ga0070677_108109171	3300005333	Miscanthus Rhizosphere	MEHQRPIATKVFLKPEVVVNEADRGQIEQQVRALTGRSSVEILAVRKVLDTNGRTVSFEVDIR*
Ga0070692_112548871	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VIDSELIGNEEDRSKIEQRVKAMTGRTNFEVLEVRRIPDAGGRTRSFEVDIR*
Ga0070675_1015571642	3300005354	Miscanthus Rhizosphere	VVGNEEDRSRIEQRVKELLRRTDVEVLDIRKVSGPDGKTRSFEVDIR*
Ga0070673_1021227202	3300005364	Switchgrass Rhizosphere	VLNEADRSQLEERVRALTGRTNVEVVNVRKVVAADGKTRSFEVDIR*
Ga0070688_1004255182	3300005365	Switchgrass Rhizosphere	MPEVVTNEADRGQIEQQVRMLTGRSKVEVIGVRKVVDATGRTVSFEVDIR*
Ga0070667_1002161833	3300005367	Switchgrass Rhizosphere	TVVLSPEVVLNEADRSQLEERVRALTGRTKVEVVNVRKVVAADGKTRSFEVDIR*
Ga0070701_110675761	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	EVIKNEEDKAEIAERVKAMTGRSTVEVVAVRKVLDGNGRTISFEVDIR*
Ga0070701_111715311	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MEHQRPIATKVFLKPEVVVNEADRGQIEQQVRALTGRSSVEILAVRKVLDTNG
Ga0070705_1006489301	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LKPEVVVNEADRGQIEQQVRVLTGRSSVEILAVRKVLDTNGRTVSFEVDIR*
Ga0070705_1016100721	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	PEVVGNEGDKGRIEERVRALTGRTNVEVVAVRKILDPEGRTRSFEVDIR*
Ga0070705_1018726361	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	EQDKGQIAERVKALTGRSTVEVLAVRRVLDTEGRTRSFEVDIR*
Ga0070694_1008310821	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	ETDKGQIEQRVKELTGRKQVQVLAVRRVVGEDGKTRSFEVDIR*
Ga0070681_115082881	3300005458	Corn Rhizosphere	MVDNEEDKGQIEQRVKALTGRAKVEILAVRPVVDSEGRTRSFEVDIR*
Ga0070707_1015087241	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	PEVVANEADRGQIERQVKALTGRAKVEVLAVRKVVDSEGRTRSFEVDIR*
Ga0070672_1014381552	3300005543	Miscanthus Rhizosphere	ADRGQIEQRVKALTGRSDVEVLAVRPILDPSGQTQAFEVDIR*
Ga0070672_1015197461	3300005543	Miscanthus Rhizosphere	TKVFLKPEVVVNEADRGQIEQQVRVLTGRSSVEILAVRKVLDTNGRTVSFEVDIR*
Ga0070695_1006112131	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	QTLVMRREDLGNEQDKGQIGQRIEALTGRKNVEVVAVRPVRDSKGQTLSFEVDIR*
Ga0070696_1016960312	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VVANEQDKGQIAQRIKELTGRKEVEVLTVRKVMGDDGQIRSFEVDIR*
Ga0070696_1019706352	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	NEADRSQLEERVRALTGRTKVEVVNVRKVVAADGKTRSFEVDIR*
Ga0070704_1003561221	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	TVVLSPEVVGNEGDKGQIEQRIKALTGRAEVEILEVRAIRDAEGRTRSFEVDIR*
Ga0058697_104440491	3300005562	Agave	QIEQRVKALTGRTDFEVLAVRRILDPEGRTRSFEVDIR*
Ga0070664_1006569531	3300005564	Corn Rhizosphere	IEQRVRELLRRTDVEVLDVRKIPGPDGKTQSFEVDIR*
Ga0070664_1016572081	3300005564	Corn Rhizosphere	QIEQRVKALTGRVNVEVVAVRRVVDSEGRTRSFEVDIR*
Ga0068857_1006972351	3300005577	Corn Rhizosphere	LVLSPEVVGNEEDKSQIEQRVKALTGRTNIEVLEVRRIPDAEGRTRGFEVDIR*
Ga0068857_1016152651	3300005577	Corn Rhizosphere	QDIVNEADRSQIEQLMRSRTGRADAQVVDVRKVVGADGRTIGFEVDIK*
Ga0070702_1001390791	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	NEEDKGRIAEQVKAMTGRSTVEVLAVRRVLDREGRTRSFEVDIR*
Ga0068859_1010116402	3300005617	Switchgrass Rhizosphere	KGQIEQRIKALTGRAEVEILEVRAIRDAEGRTRSFEVDIR*
Ga0068864_1000219023	3300005618	Switchgrass Rhizosphere	MPEVVTNEADRGQIEQQVRMLTGRSKVEVLNVRKVVDAKGRTVSFEVDIR*
Ga0068862_1022413922	3300005844	Switchgrass Rhizosphere	VKNEEDKGQIAERVKAMTGRSTVEVVAVRKVLDSEGRTISFEVDIR*
Ga0082029_12971541	3300006169	Termite Nest	EQVKAMTGRPAVEVLAVRRVLDANGRTLSFEVDIR*
Ga0070716_1003078241	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LHQTVILSPEVVSSEADKGQIEQRVRAVTGRSKVEVLAVRKVVDAQGRTRSLEVDIR*
Ga0097621_1020510521	3300006237	Miscanthus Rhizosphere	VLSPEVVLNEADRSQLEERVRALTGRTNVEVVNVRKVVAADGKTRSFEVDIR*
Ga0075430_1003084151	3300006846	Populus Rhizosphere	RVFLSREVIGNQRDKSQIEQRVKELTGRKEVQVLKVRELLDNDGSIRGFEVDIR*
Ga0075434_1004686281	3300006871	Populus Rhizosphere	VNEQDRSQIEQRVKALTGRSKVEVLAVRKKVGDDGRTQSFEVDIR*
Ga0079215_101458801	3300006894	Agricultural Soil	SPEVVVNEADKGHIEQRIKALTGRTKVEVIAVRRVVDSDGRTRSFEVDIR*
Ga0105250_102551741	3300009092	Switchgrass Rhizosphere	NEGDRSRIKEHVKALTGRTDVEVLAVRKIPGPDGKTRSFEVDIR*
Ga0111539_122180302	3300009094	Populus Rhizosphere	SPEVVGNEADKGQIEQRVKALTGRAKVEVLAVRKVVDSDGRTRSFEVDIR*
Ga0105245_119122462	3300009098	Miscanthus Rhizosphere	LVFEPEVILNEADRPQIEQRVKSLTGRTDVEVVAVRKVIDAEGRTRSFEVDIR*
Ga0105241_102257981	3300009174	Corn Rhizosphere	ERVRALTGRTNVEVVAVRKILDPEGRTRSFEVDIR*
Ga0126312_108603612	3300010041	Serpentine Soil	NEEDKARIEQHVKALTGLAEVEVLAVRKIAAPDGKTLSFEVDIR*
Ga0126312_112616571	3300010041	Serpentine Soil	EDVGNEGDKGQIGQRIEALTGRRNVEVLAVRPVLDSEGRTRSFEVDIR*
Ga0127488_11322912	3300010122	Grasslands Soil	EVIVDERDKAQIEERVKALTGRTEVEVVAVRKMLRPDGRTRSFEVDIR*
Ga0126306_110392001	3300010166	Serpentine Soil	PEVIDNEEDKAQIEQRVKTMTGRSEVEVLAVRRIRDQQGRTRSFEVDIR*
Ga0134067_102764211	3300010321	Grasslands Soil	NEIESRLRAITGRSDVEVLSVRPMLDQSGKTVAFEVDIR*
Ga0134125_129053461	3300010371	Terrestrial Soil	QSRIVTTLVINPEAIDNEGDKGRIAERVKALTGRENVEVLAVRKLQHPDGSTRSFEVDIR
Ga0134128_117643841	3300010373	Terrestrial Soil	EADRGQIEQQVRVLTGRSSVEILAVRKVLDTNGRTVSFEVDIR*
Ga0134122_130541941	3300010400	Terrestrial Soil	VSNEEDKAQITERVKAMTGRSTVEVLAVRRVRDAQGRTLSFEVDIR*
Ga0134123_124439022	3300010403	Terrestrial Soil	VGNEEDRSRIEQRVKELLRRTDVEVLDVRKVSGPDGKTRSFEVDIR*
Ga0150985_1197994931	3300012212	Avena Fatua Rhizosphere	LVLSPEVVGSEEDKVRIEQRIKALTGRTDVEVLAVRKVLDPEGRTRSFEVDIR*
Ga0134059_10792982	3300012402	Grasslands Soil	EVVINEADRGQIEERIRMLTGRTQVEVVAVRKVVGPDGRTVSFEVDIR*
Ga0164299_116484922	3300012958	Soil	IEQRVKELTGRTEVKVLEVRKILDADGKTRSFEVDIR*
Ga0164305_112116771	3300012989	Soil	HQTVILSPEVVSSEADKGQIEQRVRAVTGRSKVEVLAVRKVVDAQGRTRSLEVDIR*
Ga0157371_107068932	3300013102	Corn Rhizosphere	EVVGNEEDKGQIEERVKALTGRTNVEVLAVRKITHPDGRARGFEVDIR*
Ga0157375_111837942	3300013308	Miscanthus Rhizosphere	NEADRGQIEQRVRTLTGQSNAEVVAVRRVVDPEGRTISFEVDIK*
Ga0157380_117916681	3300014326	Switchgrass Rhizosphere	NEEDKVQIAERVKAMTGRSTVEVLAVRRVLDTGGRTVSFEVDIR*
Ga0157377_110148322	3300014745	Miscanthus Rhizosphere	APEVVVNESDTGQIEQRIRALTGRSKAEVVAVRKVVGPDGRAVSFEVDIK*
Ga0132255_1049521252	3300015374	Arabidopsis Rhizosphere	DNEEDKGQIEQRVKALTGRAKVEILAVRPVVDSEGRTRSFEVDIR*
Ga0132255_1063467171	3300015374	Arabidopsis Rhizosphere	VLLSPEVVSSAADRGQIERQIKTMTGRTKVEILDVRPVVDSDGRPTSFEVDIR*
Ga0190268_117847471	3300018466	Soil	LVVNEHDTVQIGQRVKELTGRKEVEVLTVRKVVGDDGQIRSFEVDIR
Ga0190274_110316161	3300018476	Soil	EVVTNEADRGQIEQHVRTLTGRSKVEVVDVRKVVGPDGKTISFEVDIR
Ga0190264_112708731	3300019377	Soil	TPEVVGNEGDKGQIEERVKALTGRSKVEVVAVRKILHPDGRTRSFEVDIR
Ga0206352_100736582	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	VFSREVVGTQGDKGQIEQRVKALTGRSDVEVLAVRPVLDASGQTQAFEVDIR
Ga0182009_106118831	3300021445	Soil	SAEVISNEADRGKIEQQVKWLTGRSQVEVLDVRKVVDSDGRTRSFEVDIR
Ga0210113_10410322	3300025796	Natural And Restored Wetlands	LVLSPEVVVNEGDKAQIEQQVRALTGRTTFEVVAVRRVLDTEGRTRSFEVDIR
Ga0207647_101848471	3300025904	Corn Rhizosphere	VENEEDKGQIEQRVKALTGRAKVEVLAVRKVLDADGRTRSFEVDIR
Ga0207707_112836762	3300025912	Corn Rhizosphere	MVDNEEDKGQIEQRVKALTGRAKVEILAVRPVVDSEGRTRSFEVDI
Ga0207649_109291392	3300025920	Corn Rhizosphere	DRNRIEQRVKELLRRTDVEVLEVRKVSGPDGKTRSFEVDIR
Ga0207649_111971111	3300025920	Corn Rhizosphere	NEEDKGRIEQQVKALTGRTDAEVLAVRKITGPDGTTLSFEVDIR
Ga0207652_105602211	3300025921	Corn Rhizosphere	RIEQQIKALTGRTDVEVLAVRKVLDPSGKIRSFEVDIR
Ga0207650_105857931	3300025925	Switchgrass Rhizosphere	GRIEERVRALTGRTNVEVVAVRKILDPEGRTRSFEVDIR
Ga0207691_113043442	3300025940	Miscanthus Rhizosphere	KPIATKVFLKPEVVVNEADRGQIEQQVRVLTGRSSVEILAVRKVLDTNGRTVSFEVDIR
Ga0207679_105011362	3300025945	Corn Rhizosphere	TLVLAPEVVVNESDTGQIEQRIRALTGRSKAEVVAVRKVVGPDGRAVSFEVDIK
Ga0207667_117383492	3300025949	Corn Rhizosphere	SPEAIGNEEDKANMEERVRALTGRTEVEVIAVRKILYPDGRIRGFEVDIR
Ga0207651_103463001	3300025960	Switchgrass Rhizosphere	VVTTVVISPELVVNEEDKSKIEQVVKGLTGRTEVEVLKVRRIPYADGRTRSFEVDIR
Ga0207651_117507971	3300025960	Switchgrass Rhizosphere	LVLSPEDVGNEGDKGRIGQRIEALTGRRNVEVLAVRPVLDSEGRTRSFEVDIR
Ga0207668_116436312	3300025972	Switchgrass Rhizosphere	SQIEQRVKELTGRTQVEVVNVRKVVGDDGKIRSFEVDIR
Ga0207703_103092533	3300026035	Switchgrass Rhizosphere	EQRVKALTGRSDVEVLAVRPVLDASGQTQAFEVDIR
Ga0207676_100275922	3300026095	Switchgrass Rhizosphere	MPEVVTNEADRGQIEQQVRMLTGRSKVEVLNVRKVVDAKGRTVSFEVDIR
Ga0207675_1007482363	3300026118	Switchgrass Rhizosphere	SQIEQRVKALTGRSDVEVLAVRPVLDASGQTQAFEVDIR
Ga0209486_110556842	3300027886	Agricultural Soil	EQQVKALTGRSDVEVIAVRKVVDPDGRTRSFEVDIR
Ga0307498_102487732	3300031170	Soil	KAHQTVVLSPEVIVNEADKGQIEARVRTVTGRSDVEVVAVRKVVGPDGRTVSFEVDIK
Ga0307408_1002456941	3300031548	Rhizosphere	PVAKTLVLTPEDIGNEGDKGRIRQRIEALTGRKDFEVVEVRPVHDPSGRTRSFEVDIR
Ga0307405_111250242	3300031731	Rhizosphere	EVVGNEGDKGRIEERVRALTGRTNVEVVAVRKILDPEGRTRSFEVDIR
Ga0307468_1009865051	3300031740	Hardwood Forest Soil	VLSPEVIVNEEDKGQIAERVKALTGRPTVEVLAVRRVLDPEGRTRSFEVDIR
Ga0310904_108881772	3300031854	Soil	VNEEDKSKIEQVVKGLTGRTEVEVLKVRRIPYADGRTRSFEVDIR
Ga0310900_107162382	3300031908	Soil	LTPEVVGNEEDKGRIEQQVKTLTGRTDVEVVAVRKVLDSAGKTRSFEVDIR
Ga0315912_103319463	3300032157	Soil	EVIGNEADKGQIEQHVKALTGRAKVEVIAVRKVVDPDGRTRSFEVDIR
Ga0310810_104492421	3300033412	Soil	TPELIGNEEDKTQIEQRVKEVTGRTEVKVLEVRKILDADGKTRSFEVDIR
Ga0314784_082286_509_643	3300034663	Soil	NERDKSQIEQRVKELTGRTQVEVVNVRKVVGDDGKIRSFEVDIR
Ga0373950_0153032_383_529	3300034818	Rhizosphere Soil	EVITNEEDKSRIVEQVKAMTGRSTVEVLAVRRVLDREGRTRSFEVDIR