Metagenome / Metatranscriptome Family F096015

Basic Information
Family ID	F096015
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	61 residues
Representative Sequence	VKGEEFKDDFRKALPKEVVQALTRRSPWKASAAVLHDVAVIAAAIAVALYFWPNPLVSL
Number of Associated Samples	100
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.76 %
% of genes near scaffold ends (potentially truncated)	99.05 %
% of genes from short scaffolds (< 2000 bps)	90.48 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Most Common Taxonomy
Group	Unclassified (53.333 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.333 % of family members)
Environment Ontology (ENVO)	Unclassified (31.429 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.048 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.13% β-sheet: 0.00% Coil/Unstructured: 52.87%
Feature Viewer

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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00171	Aldedh	75.24
PF03401	TctC	15.24
PF07331	TctB	3.81
PF01970	TctA	1.90
PF02668	TauD	1.90
PF00111	Fer2	0.95
PF02738	MoCoBD_1	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	75.24
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	75.24
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	75.24
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	15.24
COG1784	TctA family transporter	General function prediction only [R]	1.90
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.90
COG3333	TctA family transporter	General function prediction only [R]	1.90

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.33 %
All Organisms	root	All Organisms	46.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.33 %
cellular organisms	root	All Organisms → cellular organisms	46.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.33 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.71 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.95 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.33 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	19.05 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.76 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.33 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	9.52 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.95 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.33 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2.86 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.95 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.95 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.33 %
unclassified Comamonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae	0.95 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.95 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.95 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.33 %
Comamonadaceae bacterium URHA0028	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028	0.95 %
Paraburkholderia piptadeniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia piptadeniae	0.95 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.95 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10232916	Not Available	922	Open in IMG/M
3300002908\|JGI25382J43887_10096992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1563	Open in IMG/M
3300004480\|Ga0062592_100529816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	982	Open in IMG/M
3300005176\|Ga0066679_10245221	All Organisms → cellular organisms → Bacteria → Proteobacteria	1153	Open in IMG/M
3300005184\|Ga0066671_10213499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1168	Open in IMG/M
3300005332\|Ga0066388_101429233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1204	Open in IMG/M
3300005336\|Ga0070680_101318550	Not Available	625	Open in IMG/M
3300005343\|Ga0070687_100265930	All Organisms → cellular organisms → Bacteria → Proteobacteria	1073	Open in IMG/M
3300005355\|Ga0070671_101641753	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300005445\|Ga0070708_101583199	Not Available	610	Open in IMG/M
3300005456\|Ga0070678_102118584	Not Available	533	Open in IMG/M
3300005459\|Ga0068867_102215640	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300005536\|Ga0070697_100014898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028	6103	Open in IMG/M
3300005559\|Ga0066700_10928767	Not Available	576	Open in IMG/M
3300005561\|Ga0066699_10498793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	871	Open in IMG/M
3300005561\|Ga0066699_10953753	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300005566\|Ga0066693_10481901	All Organisms → cellular organisms → Bacteria → Proteobacteria	511	Open in IMG/M
3300005568\|Ga0066703_10541614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	685	Open in IMG/M
3300005616\|Ga0068852_100439311	Not Available	1290	Open in IMG/M
3300005713\|Ga0066905_100211031	All Organisms → cellular organisms → Bacteria → Proteobacteria	1460	Open in IMG/M
3300005841\|Ga0068863_102462348	All Organisms → cellular organisms → Bacteria → Proteobacteria	530	Open in IMG/M
3300005844\|Ga0068862_100605351	Not Available	1052	Open in IMG/M
3300006046\|Ga0066652_100448351	Not Available	1187	Open in IMG/M
3300006169\|Ga0082029_1608146	Not Available	610	Open in IMG/M
3300006604\|Ga0074060_11498064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	719	Open in IMG/M
3300006846\|Ga0075430_100091457	All Organisms → cellular organisms → Bacteria → Proteobacteria	2544	Open in IMG/M
3300006876\|Ga0079217_10598960	All Organisms → cellular organisms → Eukaryota	715	Open in IMG/M
3300006894\|Ga0079215_10980178	Not Available	618	Open in IMG/M
3300006918\|Ga0079216_11327858	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300007076\|Ga0075435_100168021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1850	Open in IMG/M
3300009053\|Ga0105095_10335155	Not Available	833	Open in IMG/M
3300009100\|Ga0075418_11395995	All Organisms → cellular organisms → Bacteria → Proteobacteria	760	Open in IMG/M
3300009147\|Ga0114129_10043100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6351	Open in IMG/M
3300009156\|Ga0111538_12323383	Not Available	673	Open in IMG/M
3300010038\|Ga0126315_10764366	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300010044\|Ga0126310_11865553	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300010159\|Ga0099796_10051795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1427	Open in IMG/M
3300011420\|Ga0137314_1038627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1159	Open in IMG/M
3300011437\|Ga0137429_1108898	Not Available	845	Open in IMG/M
3300011442\|Ga0137437_1028186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1927	Open in IMG/M
3300011445\|Ga0137427_10472642	Not Available	516	Open in IMG/M
3300012168\|Ga0137357_1130657	Not Available	512	Open in IMG/M
3300012171\|Ga0137342_1023833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1132	Open in IMG/M
3300012212\|Ga0150985_122026491	Not Available	965	Open in IMG/M
3300012227\|Ga0137449_1002034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3465	Open in IMG/M
3300012362\|Ga0137361_11964672	Not Available	501	Open in IMG/M
3300012671\|Ga0137318_1029243	Not Available	568	Open in IMG/M
3300012896\|Ga0157303_10108430	Not Available	685	Open in IMG/M
3300012922\|Ga0137394_10779661	Not Available	802	Open in IMG/M
3300012951\|Ga0164300_11007183	Not Available	536	Open in IMG/M
3300012975\|Ga0134110_10180772	Not Available	879	Open in IMG/M
3300012975\|Ga0134110_10509922	Not Available	548	Open in IMG/M
3300012977\|Ga0134087_10601330	Not Available	569	Open in IMG/M
3300012989\|Ga0164305_10066412	All Organisms → cellular organisms → Bacteria → Proteobacteria	2185	Open in IMG/M
3300014326\|Ga0157380_10657070	Not Available	1047	Open in IMG/M
3300015077\|Ga0173483_10787996	Not Available	547	Open in IMG/M
3300015162\|Ga0167653_1019437	Not Available	1318	Open in IMG/M
3300015372\|Ga0132256_103543372	Not Available	525	Open in IMG/M
3300015373\|Ga0132257_102016282	Not Available	744	Open in IMG/M
3300018077\|Ga0184633_10519523	Not Available	575	Open in IMG/M
3300018422\|Ga0190265_13159218	Not Available	550	Open in IMG/M
3300018429\|Ga0190272_12322191	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300018466\|Ga0190268_11427854	Not Available	595	Open in IMG/M
3300018468\|Ga0066662_11933927	Not Available	617	Open in IMG/M
3300018469\|Ga0190270_13406347	Not Available	504	Open in IMG/M
3300019208\|Ga0180110_1254868	Not Available	691	Open in IMG/M
3300019377\|Ga0190264_11704786	Not Available	561	Open in IMG/M
3300019377\|Ga0190264_12193789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia piptadeniae	514	Open in IMG/M
3300020146\|Ga0196977_1070157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	824	Open in IMG/M
3300021090\|Ga0210377_10151484	Not Available	1511	Open in IMG/M
3300024055\|Ga0247794_10255407	Not Available	580	Open in IMG/M
3300024232\|Ga0247664_1135972	Not Available	575	Open in IMG/M
3300025165\|Ga0209108_10340478	Not Available	745	Open in IMG/M
3300025289\|Ga0209002_10469933	All Organisms → cellular organisms → Bacteria → Proteobacteria	701	Open in IMG/M
3300025311\|Ga0209343_10298017	Not Available	1118	Open in IMG/M
3300025313\|Ga0209431_11114794	Not Available	547	Open in IMG/M
3300025318\|Ga0209519_10139602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1433	Open in IMG/M
3300025318\|Ga0209519_10769643	Not Available	511	Open in IMG/M
3300025899\|Ga0207642_10508970	Not Available	738	Open in IMG/M
3300025917\|Ga0207660_10497940	Not Available	988	Open in IMG/M
3300025918\|Ga0207662_10067861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2152	Open in IMG/M
3300025923\|Ga0207681_10451427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1046	Open in IMG/M
3300025930\|Ga0207701_10284042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1439	Open in IMG/M
3300025931\|Ga0207644_10749559	Not Available	816	Open in IMG/M
3300025937\|Ga0207669_10571954	Not Available	915	Open in IMG/M
3300026088\|Ga0207641_10841547	All Organisms → cellular organisms → Bacteria → Proteobacteria	909	Open in IMG/M
3300026318\|Ga0209471_1035199	All Organisms → cellular organisms → Bacteria → Proteobacteria	2414	Open in IMG/M
3300026325\|Ga0209152_10010499	All Organisms → cellular organisms → Bacteria → Proteobacteria	3220	Open in IMG/M
3300026342\|Ga0209057_1021104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3671	Open in IMG/M
3300026532\|Ga0209160_1058617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2169	Open in IMG/M
3300026542\|Ga0209805_1339789	Not Available	571	Open in IMG/M
3300027964\|Ga0256864_1106463	Not Available	787	Open in IMG/M
3300028293\|Ga0247662_1079671	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300028803\|Ga0307281_10111569	All Organisms → cellular organisms → Bacteria → Proteobacteria	929	Open in IMG/M
3300028809\|Ga0247824_10067227	All Organisms → cellular organisms → Bacteria → Proteobacteria	1859	Open in IMG/M
3300030619\|Ga0268386_10283993	Not Available	1204	Open in IMG/M
3300031716\|Ga0310813_11536674	Not Available	620	Open in IMG/M
3300031720\|Ga0307469_10420186	Not Available	1148	Open in IMG/M
3300031854\|Ga0310904_10325133	Not Available	983	Open in IMG/M
3300031858\|Ga0310892_10115246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1498	Open in IMG/M
3300031858\|Ga0310892_10305285	Not Available	1005	Open in IMG/M
3300032012\|Ga0310902_10380943	Not Available	892	Open in IMG/M
3300032180\|Ga0307471_101234670	All Organisms → cellular organisms → Bacteria → Proteobacteria	911	Open in IMG/M
3300034147\|Ga0364925_0056281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1344	Open in IMG/M
3300034417\|Ga0364941_160105	Not Available	570	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.95%
Host-Associated	Host-Associated	19.05%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.57%
Plants	Host-Associated → Plants	19.05%
Aquatic	Environmental → Aquatic	12.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.48%
Sediment	Environmental → Aquatic → Sediment	8.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.57%
Freshwater	Environmental → Aquatic → Freshwater	3.81%
Floodplain	Environmental → Terrestrial → Floodplain	1.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.19%
Loam	Environmental → Terrestrial → Soil → Loam	9.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.57%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.76%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.90%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.95%
Sand	Environmental → Terrestrial → Soil → Sand	0.95%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.81%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.86%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.95%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.38%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	7.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.86%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.90%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.95%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.95%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.95%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011437	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012168	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT860_2	Environmental	Open in IMG/M
3300012171	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT466_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012227	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT436_2	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012671	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT300_2	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015162	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019208	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT231_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020146	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025289	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2	Environmental	Open in IMG/M
3300025311	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2 (SPAdes)	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027964	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111 HiSeq	Environmental	Open in IMG/M
3300028293	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK03	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_102329162	3300001661	Forest Soil	VSQPVHGEEFKDDYRKALPKQLVQRLASRSAWRASAAVLQDVLVLAAAIALALAYWPNPLVVGLA
JGI25382J43887_100969922	3300002908	Grasslands Soil	VSEPVQGEEFKDDFRKALPKELVQRLTRRSAWRATAALVQDVSVIAIAIAAALAFWPNPLIILLSIIIVGTRQ
Ga0062592_1005298161	3300004480	Soil	MRGEEFKDDFRKALPRELVQELTRRSAWRATLCVLEDLAVLAAAIGLALFYWPNPTVMAIAVLIIGS
Ga0066679_102452211	3300005176	Soil	VTGEEFKDDYRRALPKALIQELTRRSAWRASAAILADVAVLAVALAVALAYWPNPLVLVP
Ga0066671_102134992	3300005184	Soil	MRGEEFKDDYRRALAPQLVRELTRRSAWRATEAVLADIAVLALAIGLALAYWPGPLVLLPAILVIGTRQHA
Ga0066388_1014292331	3300005332	Tropical Forest Soil	VRGEEFKDDWRGARKLSKELLQSLTRRSPWKATAAVLHDFAVLAVAIGVALYFWPNPLIIAVAVFIIG
Ga0070680_1013185501	3300005336	Corn Rhizosphere	MKGEEFKDDFRKAASRPSLPRELVQELTRRSRWRATAAVASDFVVLALTVAAGLYY
Ga0070687_1002659302	3300005343	Switchgrass Rhizosphere	VGDQFKDDYRKALPQDLVRQLTQRSAWRAITAIAHDIAVLALAIGAALWFWPNPFVTVLVVIVI
Ga0070671_1016417531	3300005355	Switchgrass Rhizosphere	MKGEEFKDDFRKAASRPSLPRELVQELTRRSRWRATAAVASDFVVLALTVAAGLYYWPNPLVLLVCVLLI
Ga0070708_1015831991	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VSGPARGEEFKDDYRKALPQELVQRLARRSAWRATAAVVQDVAVITLAIAAALACWPNP
Ga0070678_1021185842	3300005456	Miscanthus Rhizosphere	MKGEEFKDDFRKAASRPSLPRELVQELTRRSRWRATAAVASDFVVLALTVAAGLYYWPNP
Ga0068867_1022156402	3300005459	Miscanthus Rhizosphere	VKGEEFKDDFRKALPRELVQELTRRSTWRASFAVLSDFVVLALAIWAGLYYWPNPLIIFLSVLVIGTRQ
Ga0070697_1000148987	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VSGEEFKDDFRRALPKEVLRELTRRSAWRATAAVLADVAVLAIAIAAALAFWPNP
Ga0066700_109287671	3300005559	Soil	VSEPARGEEFKDDFRKALPKELVQRLTRRSAWRATVALVEDVSVIAIAIAAALAYWPNPL
Ga0066699_104987932	3300005561	Soil	MTGEEFKDDYRRALPLGLVQQLTRRSAWRATLAVLSDFLVLAAAIALALAYWPNALVLVP
Ga0066699_109537532	3300005561	Soil	VTGEEFKDDYRRALPKELVRELTRRSAWRASAAVLEDFAVLAAAIALALAYWPSPLVLVPAVLVIGTRQHAL
Ga0066693_104819012	3300005566	Soil	MAFVGDEFKDDYRKPLPKDLVQQLTQRSGWRATVAIAHDIVVLATAIGAALWFWP
Ga0066703_105416142	3300005568	Soil	VSEPARGEEFKDDFRKALPKELVQRLTRRSAWRATVALVEDVSVIAIAIAAALAFWPNPLIILLSIIIVGTRQH
Ga0068852_1004393111	3300005616	Corn Rhizosphere	VKGEEFKDDFRKALPKNVVQALTHRSPWPATAAVVHDVAVIAAAIAAALYFWPNPLVILI
Ga0066905_1002110311	3300005713	Tropical Forest Soil	MKGEEFKDDFRKALPKEVVQSLTRRSAWRASAAILHDVAVIAAALAVALHFWPNPLVIALAVVIIGT
Ga0068863_1024623482	3300005841	Switchgrass Rhizosphere	MGEEFKDDYRQALPRELIQKLTRRNPWRATAAILHDLMVLTAAIAAALWLWPNPFVIALAVIVIGTRQ
Ga0068862_1006053512	3300005844	Switchgrass Rhizosphere	MKGEEFKDDFRKALPRELVQELTRRSTWLATAAVASDFGILALAISVALYYWPNPLVILLAVIVVG
Ga0066652_1004483511	3300006046	Soil	MRGEEFKDDFRRALASELVRELTRRSAWRATGAVLGDIAVLLIAIGVALAYWPNPLVLIAAV
Ga0082029_16081461	3300006169	Termite Nest	VKGEEFKDDFRKALPREVVQRLTRRSPWRASLAVLHDVAVIVAAVAAGLHFWPNPV
Ga0074060_114980641	3300006604	Soil	VRGEEFKDDFRKALPKEVVQSLTRRSPWRATAAILHDVAVIAAAIAVALYFWPHPLVILISVVVIGTRQ
Ga0075430_1000914571	3300006846	Populus Rhizosphere	MKGEEFKDDFRKALPKEILAQLTRRSPWRASAAVLHDVVVLALAVSAGLYFWPNPWILFFSVLIIG
Ga0079217_105989601	3300006876	Agricultural Soil	VRGEEFKDDFRKALPKELVARLTRRSAWRATLAVLHDVLVLAAAIAAGLYYWPNPLVLVLSILV
Ga0079215_109801781	3300006894	Agricultural Soil	MKGEEFKDDFRKALPRELVQELTRRSAWRASMAVIHDLAILAVAISIGLYFWPNPLVLLA
Ga0079216_113278582	3300006918	Agricultural Soil	VKGEEFKDDFRKALPREVVARLTRRSVWRASLAVLHVFLALARAIGIGLYFWPNLVVLFLSILVIGTRQHA
Ga0075435_1001680211	3300007076	Populus Rhizosphere	VGEAFKDDFRQPLPKEIVQRLTRRSGWRATAAIAHDIVVLALAIGAA
Ga0105095_103351551	3300009053	Freshwater Sediment	VRGEEFRDDWRGARKVPRELVQELTRRSTWRASAAVGHDLAILAVAIAIGVYYW
Ga0075418_113959952	3300009100	Populus Rhizosphere	VGDEFKDDYRQALPKELVQKLTRRSAWRATAAIVHDFAVLGLAVFLGLYYWPNPLILLICVAVI
Ga0114129_100431007	3300009147	Populus Rhizosphere	VGEEFKDDYRQALPRELVQQLTRRDPWRATLAIAHDVAVLAAAIGAALWFWPNPLVLVVMVVVIGTR
Ga0111538_123233831	3300009156	Populus Rhizosphere	VRGEEFKDDFRKALPKEVVSRLTRRSAWRASAAVLQDLVVLAAAIWAALYFWPNPIVILL
Ga0126315_107643662	3300010038	Serpentine Soil	VKGEEFKDDFRKALPKDVVLELTRRSSWRASVAVLQDFAVIALAVAAALAYWPDLLVIVLSII
Ga0126310_118655531	3300010044	Serpentine Soil	MKGEEFKDDYRKALPAELIRGLTKRSGWLASAAVFQDFAVLAVAIAVALASWPDPFVILLAV
Ga0099796_100517951	3300010159	Vadose Zone Soil	VTGEEFKDDFRKALPKELVQRLTQRSAWRATLAVLGDVAVIALAAAVALAYW
Ga0137314_10386271	3300011420	Soil	VKGEEFKDDYRKAPPREVVQRLTRRSPWRATLSVLHDVLVLALAISLGLYFWPNPLVLLF
Ga0137429_11088981	3300011437	Soil	VKGEEFKDDFRKALPKEVVARLTRRSPWRATAAVLHDVVVLALAISAGLYFWPNPLVLV
Ga0137437_10281864	3300011442	Soil	VGDEFKDDYRKALPKDLVQQLTRRSAWRATAAIAHDLAILAATIATALYFWPNPLV
Ga0137427_104726422	3300011445	Soil	VGEEFKDDYRQALPKELVQKLTRRNPWRASAAILHDIAVLGAAIGAALWFWP
Ga0137357_11306572	3300012168	Soil	MKGEEFKDDFRKALPKEVVARLTRRSPWRATLAVLHDVLILAATIGVGLYFWPN
Ga0137342_10238332	3300012171	Soil	MKGEEFKDDFRKALPRELVQELTRRSPWRATFAVLHDVLILAAAIAAGLYFWPNPLIILLSVVVIGTRQ
Ga0150985_1220264911	3300012212	Avena Fatua Rhizosphere	VSGEEFKDDYRRALPQALIQELTRRSAWRASAAVLADVAVLAAAIGIALAYWPNPLVLIPAIIII
Ga0137449_10020341	3300012227	Soil	VSAGEEFKDDFRKALPRELVLELTRRSAWRATAAVLSDVAVIALAAAVALAFW
Ga0137361_119646721	3300012362	Vadose Zone Soil	VSEPVQGEEFKDDYRKAMPPELVQRLARRSAWRATAAVVQDVAVIALAIAAAL
Ga0137318_10292432	3300012671	Soil	VSAGEEFKDDFRKALPRELVLELTRRSAWRATAAVLSDVAVIALAAAVALAFWPAPFVVLLCVLVIGTRQH
Ga0157303_101084301	3300012896	Soil	VRGEEFKDDFRKALPKNVVQALTHRSPWRATAAILHDVAVIAVALAVALYFWPNPL
Ga0137394_107796611	3300012922	Vadose Zone Soil	MSGEEFKDDYRRALPKELIQELTRRSAWRATAAVLADFAVLAAAIAVALAYWPNPLV
Ga0164300_110071832	3300012951	Soil	MRGEEFKDDFRRALAPELVRELTRRSAWRATAAVLADIAVLALAIGVALAYWPNPLVLIPAVIII
Ga0134110_101807722	3300012975	Grasslands Soil	VSGEEFKDDYRRALPKELVQQLTRRSAWRASAAVLADFAVLAAAIALALAYWPNPLVLVPAILIIG
Ga0134110_105099222	3300012975	Grasslands Soil	VTGEEFKDDYRRALPKALIQELTRRSAWRASVAILADVAVLAAAIAVALAYW
Ga0134087_106013301	3300012977	Grasslands Soil	MTGEEFKDDYRRALPLGLVQQLTRRSAWRATLAVLSDFLVLAAAIALALAY
Ga0164305_100664121	3300012989	Soil	VRGEEFKDDFRKALPKEVVQSLTRRSPWRATAAIVHDVAVIAVAVASALYFWPNPLVIAVSVLIIGTRQHA
Ga0157380_106570702	3300014326	Switchgrass Rhizosphere	VKGEEFKDDFRKALPRELVQELTRRSTWRASFAVLSDFVVLALAIWAGLYYWPNPLIIFLSVL
Ga0173483_107879962	3300015077	Soil	MKGEEFKDDFRKALPRELVQELTRRSTWLATAAVASDFGILALAISVALYYWPNPLVILPAVIVVG
Ga0167653_10194371	3300015162	Glacier Forefield Soil	VRGEEFKDDYRRALPKELVQELTRRSAWRASTAVLEDFAVLAAAIAVALAYW
Ga0132256_1035433721	3300015372	Arabidopsis Rhizosphere	VKGEEFKDDYRRALPKALVLELTRRSAWRATLAVLEDFAVLALAIGAALYWWPNPLV
Ga0132257_1020162822	3300015373	Arabidopsis Rhizosphere	VKGEEFKDDFRKALPRELVQELTRRSDWRATFAVLHDVLILAAAIAAGLYFWPNPLVVLISVI
Ga0184633_105195231	3300018077	Groundwater Sediment	VNRGEEFKDDFRKELPKEIVLRLARRSPWRASAAVLHDVAVIAAAIWVALYFWPNPALVLLSVL
Ga0190265_131592181	3300018422	Soil	MTGEEFKDDFRKSLPKELVQRLTRRSAWRATVAILEDFAVIAAALAAALAFWPNPAVIFLSVVLIGVK
Ga0190272_123221911	3300018429	Soil	VKGEEFKDDFRKAASRPSLPRELVQELTRRSTLRASFAVLHDLLILAAAIAVGLYFWPNPLIVFLSVLVIG
Ga0190268_114278541	3300018466	Soil	VKGEEFKDDFRKAASRPGLPRELVQELTRRSAWRASFAVLHDVLILAAAIGAALYF
Ga0066662_119339272	3300018468	Grasslands Soil	VSEPVQGEEFKDDFRKALPKELVQRLTRRSAWRATAALVQDVSVIAIAIAAALAFWPNPLIILL
Ga0190270_134063471	3300018469	Soil	VKGEEFKDDWRGARLPKEILAQLTRRSPWRASAAILHDVVVLALAVSAGLYFWPNPWI
Ga0180110_12548681	3300019208	Groundwater Sediment	VSAGEEFKDDFRKALPRELVLELTRRSAWRATAAVLSDVAVIALAAAVALAFWPAPFV
Ga0190264_117047861	3300019377	Soil	MKGEEFKDDFRKALPRAVVQRLTRRSPWRATFAVLHDVLILAIAIAAGLYYWPNPL
Ga0190264_121937892	3300019377	Soil	VKGEEFKDDFRKALPREVVQSLARRSPWKATAAVLHDVAVIAIAVTLALHFWPNP
Ga0196977_10701571	3300020146	Soil	MTRGEEFKDDFRRALPAELVQRLTRRSGWRATGAILGDVAVIALAVGAALASWPHPAVLLLCVVLIGTRQH
Ga0210377_101514842	3300021090	Groundwater Sediment	MNPATAGEEFKDDLRKAASRPSLPKELVRRLTRRSAWRATAAILEDLAVIAVALAAALAFWP
Ga0247794_102554072	3300024055	Soil	VKGEEFKDDFRKALPRELVLELTRRSAARASLAVFQDVFFIALSICAALYLWPNP
Ga0247664_11359722	3300024232	Soil	VKGEDFKDDFRKALPKEVVQSLTRRSPWRATAAIVHDVAVIAAAVAIARYFWPHPIIIALAVLVIGT
Ga0209108_103404781	3300025165	Soil	VKGEEFKDDFRKALPRELVLELTRRSPWRATAAVLADVAVIAATLAVALYYWPNPLVVFISVLVVGT
Ga0209002_104699332	3300025289	Soil	VKSGEEFKDDFRRELPREIVLELTKRSPWRATAALEDVAVIAATLAVALHY
Ga0209343_102980171	3300025311	Groundwater	VKSGEEFKDDFRKELPREVVLQLTRRSPWRATASVLADVAVIAATLAVALYYWPNPVVVS
Ga0209431_111147942	3300025313	Soil	VKGEEFKDDFRKELPREVVLQLTRRSPWRATASVLADVAVIAATLAVALYYWPNPV
Ga0209519_101396022	3300025318	Soil	VKSGEEFKDDFRRELPREIVLELTKRSPWRATAAVLEDVAVIAATLAVALHYWPDPLVIL
Ga0209519_107696431	3300025318	Soil	VTGEEFKDDFRKQLPKEVVVRLTQRSPWRASAAIAHDLAIIGASIGLALLYWPNPFVVFLSI
Ga0207642_105089701	3300025899	Miscanthus Rhizosphere	VKGEEFKDDFRKALPRELVQELTRRSTWRASFAVLSDFVVLALAIWAGLYYWPNPLIIFLSVLVIGTRQHA
Ga0207660_104979402	3300025917	Corn Rhizosphere	MRGEEFKDDFRKALPRELVQELTRRSAWRATLCVLEDLAVLAAAIGLALFYWPNPTVMAIAVLII
Ga0207662_100678611	3300025918	Switchgrass Rhizosphere	VGDQFKDDYRKALPQDLVRQLTQRSAWRAITAIAHDIAVLALAIGAALWFWPNPFVTVLVVIVIVGTV
Ga0207681_104514272	3300025923	Switchgrass Rhizosphere	VKGEEFKDDFRKALPRELVQELTRRSTWRASFAVLSDFVVLALAIWAGLYYWPNPLIIFLSVLAIGTRQHALF
Ga0207701_102840421	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VKGEEFKDDFRKALPRELVQELTRRSTWRASFAVLSDFVVLALAIWAGLYYWPNPLIIFLSVLVI
Ga0207644_107495591	3300025931	Switchgrass Rhizosphere	MKGEEFKDDFRKAASRPSLPRELVQELTRRSRWRATAAVASDFVVLALTVAAGLYYWPNPLVLLVCVLLIGTRQHALF
Ga0207669_105719541	3300025937	Miscanthus Rhizosphere	LKGEDFKDDFRKALPKDVVLELTRRSAWRASIAVLQDFAVIAVALAAALAYWPNP
Ga0207641_108415471	3300026088	Switchgrass Rhizosphere	MGEEFKDDYRQALPRELIQKLTRRNPWRATAAILHDLMVLTAAIAAALWL
Ga0209471_10351991	3300026318	Soil	VTGEEFKDDYRRALPKELVQQLTRRSAWRATAAVLEDFAVLAAAIALALAYWPNPMI
Ga0209152_100104994	3300026325	Soil	VSEPVQGEEFKDDFRKALPKELVQRLTRRSAWRSSAALLQDIFVLIVSVSVALAFWPNPLMVGLAVIIIGTRQ
Ga0209057_10211041	3300026342	Soil	VSEPVQGEEFKDDFRKALPKELVQRLTRRSAWRSSAALLQDIFVLIVSVSVALAFWPNPLIVGLAVIIIG
Ga0209160_10586171	3300026532	Soil	VSEPARGEEFKDDFRKALPKELVQRLTRRSAWRATAALVEDVSVIAIAIAAALAYWPNPLIILLSIIIVGT
Ga0209805_13397891	3300026542	Soil	MRGEEFKDDFRRALAPELVRELTRRSAWRASGAISADVAVLALAIGIALAYWPNPLALLP
Ga0256864_11064632	3300027964	Soil	VSRGEEFKNDVRRELPREVVLRLTRRSPWRATATVLEDVAVLAAAIGAALYYWPNPIVVLIAV
Ga0247662_10796711	3300028293	Soil	VGDEFKDDYRQALPREIVQQLTRRNARRATLAIVHDLAVIAAAVGAALWFWPDPLVALLAVVII
Ga0307281_101115691	3300028803	Soil	VGDEFKDDYRRALPKDLVQQLTQRSAWRATAAIAHDLAILAATIATALYFWPNPLLIA
Ga0247824_100672273	3300028809	Soil	VNRGEEFKDDFRKALPRELVLELTRRSPWRATAAVVHDFAVLAFAVSLGLYFW
Ga0268386_102839932	3300030619	Soil	VRGEEFKDDFRKALPKEVVQTLTRRSSWRATAAVLHDFTVIAAVIAVALYFWPD
Ga0310813_115366742	3300031716	Soil	VKGEEFKDDFRKALPRELVVELTRRSAARASLAVFQDVFFIALSICAALYLWPNPLVV
Ga0307469_104201861	3300031720	Hardwood Forest Soil	VKGEEFKDDFRKALPKSVVQALTHRSPSRATAAVVHDVAVIAAAIAIALHFWPNPLVILI
Ga0310904_103251331	3300031854	Soil	VKGEEFKDDFRKALPREVVQVLTRRSPWRATAAIVHDVAVIAVAVASALYFWPNPLVIA
Ga0310892_101152461	3300031858	Soil	MKGEEFKDDFRKALPRELVQELTRRSTWRATAAVASDFGILALAISVALYYWPNPLVILL
Ga0310892_103052852	3300031858	Soil	VKGEEFKDDFRKALPKDVVQALARRSSWKATAAILHDVAVIAGALAIALYFWPNPLAILLSLLVI
Ga0310902_103809432	3300032012	Soil	MKGEEFKDDFRKALPRELVQELTRRSTWRATAAVASDFGILALAISVALYYWPNPLVILLAVIVVGT
Ga0307471_1012346701	3300032180	Hardwood Forest Soil	VGEAFKDDFRQPLPKEIVQRLTRRSGWRATLAIAHDSVVLAAAIAAALWFWP
Ga0364925_0056281_1141_1344	3300034147	Sediment	VKGEEFKDDFRKALPKEVVARLTRRSPWRATLAVLHDVLILAATIGVGLYFWPNPFVLLLSVLIIGTR
Ga0364941_160105_392_568	3300034417	Sediment	VKGEEFKDDFRKALPKEVVQALTRRSPWKASAAVLHDVAVIAAAIAVALYFWPNPLVSL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096015

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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