Metagenome / Metatranscriptome Family F096014

Basic Information
Family ID	F096014
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	72 residues
Representative Sequence	MADDPNKKHNDGWFVSSQPHEYQYFFDSIKKACSKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC
Number of Associated Samples	84
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.14 %
% of genes near scaffold ends (potentially truncated)	26.67 %
% of genes from short scaffolds (< 2000 bps)	74.29 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Most Common Taxonomy
Group	Bacteria (55.238 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil (13.333 % of family members)
Environment Ontology (ENVO)	Unclassified (39.048 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.238 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.41% β-sheet: 0.00% Coil/Unstructured: 58.59%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF14452	Multi_ubiq	6.67
PF01435	Peptidase_M48	3.81
PF00004	AAA	2.86
PF13304	AAA_21	2.86
PF12833	HTH_18	2.86
PF04471	Mrr_cat	1.90
PF05139	Erythro_esteras	1.90
PF00589	Phage_integrase	0.95
PF06114	Peptidase_M78	0.95
PF13031	DUF3892	0.95
PF00580	UvrD-helicase	0.95
PF01381	HTH_3	0.95
PF13560	HTH_31	0.95
PF06940	DUF1287	0.95
PF00291	PALP	0.95
PF12844	HTH_19	0.95
PF13492	GAF_3	0.95
PF13540	RCC1_2	0.95
PF01740	STAS	0.95
PF02954	HTH_8	0.95
PF04434	SWIM	0.95
PF10412	TrwB_AAD_bind	0.95
PF00145	DNA_methylase	0.95
PF12846	AAA_10	0.95
PF01546	Peptidase_M20	0.95
PF01555	N6_N4_Mtase	0.95
PF04255	DUF433	0.95
PF13191	AAA_16	0.95
PF03401	TctC	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG2312	Erythromycin esterase homolog	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.90
COG0210	Superfamily I DNA or RNA helicase	Replication, recombination and repair [L]	0.95
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.95
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.95
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.95
COG1074	3Ã¢â‚¬â„¢-5Ã¢â‚¬â„¢ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.95
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.95
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.95
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.95
COG3738	Uncharacterized conserved protein YijF, DUF1287 family	Function unknown [S]	0.95
COG3973	DNA helicase IV	Replication, recombination and repair [L]	0.95
COG4279	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.95
COG4715	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.95
COG5431	Predicted nucleic acid-binding protein, contains SWIM-type Zn-finger domain	General function prediction only [R]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.19 %
Unclassified	root	N/A	43.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.19 %
Unclassified	root	N/A	43.81 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.24 %
Unclassified	root	N/A	43.81 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	18.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.43 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.90 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	1.90 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	6.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.76 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.86 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.86 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.90 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	1.90 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.95 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.95 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	5.71 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	2.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.86 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	1.90 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	1.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.90 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.95 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.95 %
Chloroflexi incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis	0.95 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.95 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.95 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.95 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.95 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	5.71 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.90 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	1.90 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	1.90 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.95 %
SAR202 cluster	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster	0.95 %
Methanotrichales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales	0.95 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.95 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.95 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.95 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	0.95 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.95 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	5.71 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1.90 %
Chelativorans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans	1.90 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	1.90 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.95 %
SAR202 cluster bacterium Io17-Chloro-G9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G9	0.95 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.95 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.95 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.95 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.95 %
Methanotrichaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae	0.95 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.95 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.95 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	5.71 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Nitrospira moscoviensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1.90 %
unclassified Chelativorans	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans	1.90 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	1.90 %
Granulicella arctica	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica	0.95 %
Gimesia	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia	0.95 %
Microcoleaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae	0.95 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	0.95 %
Methanothrix	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	0.95 %
Geobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	0.95 %
unclassified Opitutaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae	0.95 %
SAR202 cluster bacterium Io17-Chloro-G9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G9	0.95 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.95 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	5.71 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Chelativorans sp. J32	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. J32	1.90 %
Nitrospira moscoviensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1.90 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	1.90 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.95 %
Opitutaceae bacterium EW11	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium EW11	0.95 %
unclassified Methanothrix	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix	0.95 %
Gimesia maris	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → Gimesia maris	0.95 %
Geobacter sulfurreducens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter sulfurreducens	0.95 %
Planktothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Planktothrix	0.95 %
Granulicella arctica	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica	0.95 %
SAR202 cluster bacterium Io17-Chloro-G9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G9	0.95 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.95 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	5.71 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Chelativorans sp. J32	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. J32	1.90 %
Nitrospira moscoviensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1.90 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	1.90 %
Methanosaeta sp. PtaU1.Bin112	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	0.95 %
unclassified Planktothrix	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Planktothrix → unclassified Planktothrix	0.95 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.95 %
Opitutaceae bacterium EW11	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium EW11	0.95 %
Gimesia maris	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → Gimesia maris	0.95 %
Geobacter sulfurreducens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter sulfurreducens	0.95 %
Granulicella arctica	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica	0.95 %
SAR202 cluster bacterium Io17-Chloro-G9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G9	0.95 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.95 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.81 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	5.71 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Chelativorans sp. J32	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. J32	1.90 %
Nitrospira moscoviensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1.90 %
Acidobacteria bacterium 13_2_20CM_57_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	1.90 %
Planktothrix sp. UBA10369	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Planktothrix → unclassified Planktothrix → Planktothrix sp. UBA10369	0.95 %
Methanosaeta sp. PtaU1.Bin112	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	0.95 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.95 %
Opitutaceae bacterium EW11	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium EW11	0.95 %
Gimesia maris	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → Gimesia maris	0.95 %
Geobacter sulfurreducens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter sulfurreducens	0.95 %
Granulicella arctica	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica	0.95 %
SAR202 cluster bacterium Io17-Chloro-G9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G9	0.95 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.95 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.95 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104484524	Not Available	592	Open in IMG/M
3300001990\|JGI24737J22298_10096225	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	878	Open in IMG/M
3300002568\|C688J35102_119562313	Not Available	720	Open in IMG/M
3300002568\|C688J35102_120961359	All Organisms → cellular organisms → Bacteria → Acidobacteria	3240	Open in IMG/M
3300003228\|JGI26300J46817_100544	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica	1606	Open in IMG/M
3300003319\|soilL2_10274047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G9	1800	Open in IMG/M
3300003465\|P52013CM_1023230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1969	Open in IMG/M
3300004081\|Ga0063454_101232834	Not Available	621	Open in IMG/M
3300004114\|Ga0062593_102510618	Not Available	584	Open in IMG/M
3300005290\|Ga0065712_10569336	Not Available	599	Open in IMG/M
3300005330\|Ga0070690_101552086	Not Available	536	Open in IMG/M
3300005337\|Ga0070682_100109717	Not Available	1837	Open in IMG/M
3300005340\|Ga0070689_100867109	Not Available	797	Open in IMG/M
3300005345\|Ga0070692_10035600	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	2522	Open in IMG/M
3300005345\|Ga0070692_11260997	Not Available	529	Open in IMG/M
3300005406\|Ga0070703_10522229	Not Available	537	Open in IMG/M
3300005444\|Ga0070694_100141295	All Organisms → cellular organisms → Bacteria → Acidobacteria	1749	Open in IMG/M
3300005467\|Ga0070706_100000193	All Organisms → cellular organisms → Bacteria	76590	Open in IMG/M
3300005518\|Ga0070699_100172428	Not Available	1917	Open in IMG/M
3300005536\|Ga0070697_100018934	All Organisms → cellular organisms → Bacteria	5433	Open in IMG/M
3300005539\|Ga0068853_100187618	Not Available	1877	Open in IMG/M
3300005543\|Ga0070672_100208942	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	1634	Open in IMG/M
3300005544\|Ga0070686_100004000	All Organisms → cellular organisms → Bacteria	8105	Open in IMG/M
3300005547\|Ga0070693_101185856	Not Available	586	Open in IMG/M
3300005617\|Ga0068859_100004762	All Organisms → cellular organisms → Bacteria	13795	Open in IMG/M
3300005617\|Ga0068859_100433287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1411	Open in IMG/M
3300005842\|Ga0068858_100026985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5335	Open in IMG/M
3300005842\|Ga0068858_100413627	Not Available	1296	Open in IMG/M
3300005843\|Ga0068860_100061132	All Organisms → cellular organisms → Bacteria	3579	Open in IMG/M
3300005843\|Ga0068860_100587588	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300005843\|Ga0068860_101408766	Not Available	718	Open in IMG/M
3300005844\|Ga0068862_101073891	Not Available	799	Open in IMG/M
3300006169\|Ga0082029_1623266	All Organisms → cellular organisms → Bacteria	27165	Open in IMG/M
3300006755\|Ga0079222_11935522	Not Available	577	Open in IMG/M
3300006804\|Ga0079221_11256746	Not Available	579	Open in IMG/M
3300006804\|Ga0079221_11484519	Not Available	543	Open in IMG/M
3300006853\|Ga0075420_101835887	Not Available	518	Open in IMG/M
3300006876\|Ga0079217_11098975	Not Available	593	Open in IMG/M
3300006954\|Ga0079219_10124632	All Organisms → cellular organisms → Bacteria	1321	Open in IMG/M
3300007004\|Ga0079218_14001385	Not Available	501	Open in IMG/M
3300009029\|Ga0066793_10134291	All Organisms → cellular organisms → Bacteria → Proteobacteria	1443	Open in IMG/M
3300009029\|Ga0066793_10167025	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1283	Open in IMG/M
3300009093\|Ga0105240_10010069	All Organisms → cellular organisms → Bacteria → Proteobacteria	13311	Open in IMG/M
3300009148\|Ga0105243_10862744	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	897	Open in IMG/M
3300009176\|Ga0105242_11303275	Not Available	750	Open in IMG/M
3300009545\|Ga0105237_10717039	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1007	Open in IMG/M
3300009551\|Ga0105238_10007182	All Organisms → cellular organisms → Bacteria	11141	Open in IMG/M
3300010038\|Ga0126315_10718890	Not Available	653	Open in IMG/M
3300010373\|Ga0134128_10048389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. J32	4929	Open in IMG/M
3300010373\|Ga0134128_10812235	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1036	Open in IMG/M
3300010375\|Ga0105239_11120156	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	906	Open in IMG/M
3300010375\|Ga0105239_11856613	Not Available	699	Open in IMG/M
3300010375\|Ga0105239_13247851	Not Available	529	Open in IMG/M
3300010397\|Ga0134124_10089004	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	2668	Open in IMG/M
3300010397\|Ga0134124_10818339	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300010399\|Ga0134127_12643994	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300010399\|Ga0134127_13723868	Not Available	501	Open in IMG/M
3300010400\|Ga0134122_10039497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Planktothrix → unclassified Planktothrix → Planktothrix sp. UBA10369	3599	Open in IMG/M
3300010400\|Ga0134122_10604466	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1014	Open in IMG/M
3300010400\|Ga0134122_12039640	Not Available	613	Open in IMG/M
3300010400\|Ga0134122_13314035	Not Available	506	Open in IMG/M
3300010401\|Ga0134121_10085968	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2621	Open in IMG/M
3300010401\|Ga0134121_10710361	Not Available	954	Open in IMG/M
3300010401\|Ga0134121_12573919	Not Available	552	Open in IMG/M
3300010403\|Ga0134123_10013554	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	5620	Open in IMG/M
3300011003\|Ga0138514_100135738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	544	Open in IMG/M
3300011003\|Ga0138514_100143123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	530	Open in IMG/M
3300011271\|Ga0137393_11583964	Not Available	544	Open in IMG/M
3300012204\|Ga0137374_10802411	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300012353\|Ga0137367_10769943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	669	Open in IMG/M
3300012357\|Ga0137384_11300270	Not Available	574	Open in IMG/M
3300012361\|Ga0137360_11059667	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300012469\|Ga0150984_104795325	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300012530\|Ga0136635_10167115	Not Available	736	Open in IMG/M
3300012582\|Ga0137358_10216044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1307	Open in IMG/M
3300012923\|Ga0137359_10002975	All Organisms → cellular organisms → Bacteria	13678	Open in IMG/M
3300014745\|Ga0157377_10034186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. J32	2780	Open in IMG/M
3300014968\|Ga0157379_11077258	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	769	Open in IMG/M
3300015069\|Ga0167633_112290	All Organisms → cellular organisms → Bacteria → Acidobacteria	1043	Open in IMG/M
3300015372\|Ga0132256_102448330	Not Available	624	Open in IMG/M
3300018061\|Ga0184619_10000365	All Organisms → cellular organisms → Bacteria	15430	Open in IMG/M
3300018429\|Ga0190272_10170334	All Organisms → cellular organisms → Bacteria → Acidobacteria	1530	Open in IMG/M
3300019881\|Ga0193707_1000081	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	24315	Open in IMG/M
3300020018\|Ga0193721_1035003	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter sulfurreducens	1327	Open in IMG/M
3300021445\|Ga0182009_10518556	Not Available	630	Open in IMG/M
3300024187\|Ga0247672_1058030	Not Available	648	Open in IMG/M
3300025900\|Ga0207710_10052303	Not Available	1836	Open in IMG/M
3300025904\|Ga0207647_10003417	All Organisms → cellular organisms → Bacteria → Acidobacteria	11908	Open in IMG/M
3300025910\|Ga0207684_10000251	All Organisms → cellular organisms → Bacteria	80339	Open in IMG/M
3300025913\|Ga0207695_10565457	Not Available	1018	Open in IMG/M
3300025936\|Ga0207670_10767190	Not Available	802	Open in IMG/M
3300025940\|Ga0207691_10557477	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	971	Open in IMG/M
3300025941\|Ga0207711_10000692	All Organisms → cellular organisms → Bacteria	33227	Open in IMG/M
3300026041\|Ga0207639_10064615	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2838	Open in IMG/M
3300026802\|Ga0207511_100110	All Organisms → cellular organisms → Bacteria → Acidobacteria	20146	Open in IMG/M
3300028281\|Ga0247689_1045625	Not Available	612	Open in IMG/M
3300028380\|Ga0268265_11820734	Not Available	615	Open in IMG/M
3300028381\|Ga0268264_10036291	All Organisms → cellular organisms → Bacteria	4061	Open in IMG/M
3300028381\|Ga0268264_10459940	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300028381\|Ga0268264_12229618	Not Available	555	Open in IMG/M
3300030510\|Ga0268243_1127285	Not Available	606	Open in IMG/M
3300031421\|Ga0308194_10280666	Not Available	570	Open in IMG/M
3300031456\|Ga0307513_10243707	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium EW11	1600	Open in IMG/M
3300031949\|Ga0214473_12022629	Not Available	561	Open in IMG/M
3300033489\|Ga0299912_10031028	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → Gimesia maris	4639	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.71%
Host-Associated	Host-Associated	34.29%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.81%
Plants	Host-Associated → Plants	34.29%
Aquatic	Environmental → Aquatic	1.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.19%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.90%
Freshwater	Environmental → Aquatic → Freshwater	0.95%
Sediment	Environmental → Aquatic → Sediment	0.95%
Roots	Host-Associated → Plants → Roots	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.81%
Loam	Environmental → Terrestrial → Soil → Loam	16.19%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.90%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.90%
Ice	Environmental → Aquatic → Freshwater → Ice	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.33%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.90%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.90%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.95%
Mine Drainage	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	13.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	11.43%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	6.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.90%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.90%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.90%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.95%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.95%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.95%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.95%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil	0.95%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.95%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003228	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-C	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003465	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012530	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06)	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015069	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4C, Ice margin, adjacent to proglacial lake	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300024187	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026802	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-C (SPAdes)	Environmental	Open in IMG/M
3300028281	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK30	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096014

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1044845241	3300000364	Soil	MADDPNKKHVDGWFVSSQPHEYDYFKSTIKEAFPNKSDEEIAEAILSCRKAIAPSEGRKKLTECVHEKLG
JGI24737J22298_100962252	3300001990	Corn Rhizosphere	MADDPNKKHNDGWFVSSQPHEXKYFFDSIKEICAKSADTEIAEAIFSCRKAIQPSEGRTKLTECVKKKLGC*
C688J35102_1195623131	3300002568	Soil	MADDPNKKHNDGWFVSSQPHEYQYFFDPIKKACSKSSDTEIAEAIFSCRKAIQPSEGRTKLTECVKKKLGC*
C688J35102_1209613593	3300002568	Soil	MADDPNKKHNDDWFVSSQPHEYQYFFDSIKKACPNSADTEIAEAIFSCRKAIQPSEGRTKLTECVKKKLGC*
JGI26300J46817_1005441	3300003228	Soil	MADDPNKKHVDSWFVSTQPYEYEYFKTTIKKSFPTKSDDEVAQAILHCRKTLAPSEGRAKLTECVNKRLRGY*
soilL2_102740472	3300003319	Sugarcane Root And Bulk Soil	MADDPNKRHVDGWFVSSQPHEYDYFKTTIKKSFPAKSDDEIAQAILSCRKSLSPSEGRTKLTECVSKRLRG*
P52013CM_10232303	3300003465	Ore Pile And Mine Drainage Contaminated Soil	MADDPNKKHVDGWFVSTQPHEYEYFKGSMKKEFPWKADDEVAAAILACRKALAPSEGREKLKQCVRNKLR*
Ga0063454_1012328342	3300004081	Soil	MADDPNKKHNDDWFVSSQPHEYQYFFDSIKKACPNSADTEIAEAIFSCRKAIQPSEGRTKLTECVKKK
Ga0062593_1025106182	3300004114	Soil	MADDPNKKHNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAILSCRKTIQPSEGRAKLTECVKKKLGC*
Ga0065712_105693361	3300005290	Miscanthus Rhizosphere	MADDPNKKHNDGWFVSSQPHEYKYFFDSIKEICAKSADTEIAEAIFSCRKAIQPSEGRTKLTECVKKKLGC*
Ga0070690_1015520861	3300005330	Switchgrass Rhizosphere	MADDPNKKHNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAIISCRKAIQPSEGRAKLTECVKKKLGC*
Ga0070682_1001097172	3300005337	Corn Rhizosphere	MADDPNKKHNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLSC*
Ga0070689_1008671092	3300005340	Switchgrass Rhizosphere	MTDDPNKKHNDGWFVSNQPHEYQYFFDSIKKVCTKSSDTDIAEAILSCRKAIQPSEGRAKLTECVKNKLGC*
Ga0070692_100356002	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MADDPNKKHNDGWFVSSQPHEYKYVFDSIKEICAKSADTEIAEAIFSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0070692_112609971	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MADDPNKKHNDGWFVSDQPYEYQYFFDSIKKACSTNSDTQIAEAILSCRKAIQPSEGRAKLTECVKKKLVC*
Ga0070703_105222291	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MADDPNKKHVDGWFVSNQPHEYEYFKPTIKNAFPSKSDDEVAQAIFSCRRSMSPSEGRTKLTECVHKRLGG*
Ga0070694_1001412953	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MADDPNKKHVDGWFVSSQPHEYEYFKKTIAEAFPSKSDEEIADAILSCRKAIAPSEGRAKLTECVKKKLRGY*
Ga0070706_10000019351	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MADDPNKKHNDGWFVSSQPHEYQYFFDSIKKACSKSSDTEIAEAIFSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0070699_1001724283	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MADDPIKKHVDGWFVSSQLHEYEYFKTTIKKGFPMKSADEVAQAILSCRKAIAPSEGRVKLTECVNKRLRGY*
Ga0070697_1000189341	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	ADDPNKKHNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAILSCRKAIRPSEGRAKLTECKAN*
Ga0068853_1001876181	3300005539	Corn Rhizosphere	MADDPNKKHNDGWFVSSQPHEYKYFFDSIKEICAKSADTEIAEAIFSCRKAIQPSEGRTKLTECVKKS*
Ga0070672_1002089421	3300005543	Miscanthus Rhizosphere	NKRQLEGTLTMADDPNKKHNDGWFVSSQPHEYKYFFDSIKEICAKSADTEIAEAIFSCRKAIQPSEGRTKLTECVKKKLGC*
Ga0070686_1000040007	3300005544	Switchgrass Rhizosphere	MSDDPNKKHVDSWFVSSQPHEYEYFKNAIKKNFPAKSDDEVAQAILYCRKTLAPSEGRAKLTECVNKRLQNY*
Ga0070693_1011858561	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MADDPNKKHNDGWFVSSQPHEYQYFFDSIKKACSKSSDAEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0068859_1000047622	3300005617	Switchgrass Rhizosphere	MTDDPNKKHNDGWFVSNQPHEYQYFFDSIKKVCSKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0068859_1004332871	3300005617	Switchgrass Rhizosphere	KHNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0068858_1000269852	3300005842	Switchgrass Rhizosphere	MADDPNKKHNDGWFVSSQPHEYKYFFDSIKEICAKSADTEIAEAIFSCRKAIQPSEGRAKLTNA*
Ga0068858_1004136271	3300005842	Switchgrass Rhizosphere	MADDPNKKHVDGWFVSNQPYEYEYFKTTIKKAFPSKSDDEVAQAIFSCRQSIAPSEGRAKLTECVNRRL
Ga0068860_1000611323	3300005843	Switchgrass Rhizosphere	MADDPNKKHVDGWFLSSQPYEYEYFKATIKKAFPSKSDEEVAQAILSCRRSIAPSEGRAKLTECVNTRLRG*
Ga0068860_1005875881	3300005843	Switchgrass Rhizosphere	KHVDSWFVSSQPHEYEYFKNAIKKNFPAKSDDEVAQAILYCRKTLAPSEGRAKLTECVNKRLQNY*
Ga0068860_1014087662	3300005843	Switchgrass Rhizosphere	MSDDPNKKHVDSWFVSSQLHEYEYFKTTIKKNFPMKSDDEVAQAILYCRKTLAPSEGRARLTECVNRRLRGY*
Ga0068862_1010738911	3300005844	Switchgrass Rhizosphere	MADDPNKKHNDGWFVSSQPHEYQYFFDSIKKACSKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0082029_162326618	3300006169	Termite Nest	MTDDPNKKYNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAVLSCRKAIQPSEGRAKLTECVKKRLGC*
Ga0079222_119355221	3300006755	Agricultural Soil	DDTMADDPNKKHVDGWFVSSQPHEYKYFKSTIQLNLPTKPADEIAQAILACRKVIAPSEGREKLKACVKRRLGG*
Ga0079221_112567462	3300006804	Agricultural Soil	MADDPNKKHNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEMAEAIFSCWKAIQPSEGRAKLTECVKKKLGC*
Ga0079221_114845191	3300006804	Agricultural Soil	MTDDPNKKHNDGWFLSNQPYEYQYFFDSIKKACSKSSDTEIAEAIFSCRKALQPSEGRAKLTECVKKQLGC*
Ga0075420_1018358871	3300006853	Populus Rhizosphere	MADDPNKKHNDGWFVSSQPHEYQYFFDSIKKACSTSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0079217_110989752	3300006876	Agricultural Soil	MADDPNKKHNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0079219_101246322	3300006954	Agricultural Soil	MADDPNKKHDDGWFVSSQPYEYQYFFDSIKKACPKSSDTEIADAIFSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0079218_140013851	3300007004	Agricultural Soil	HNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAILSCRRAIQPSEGRAKLTECVKKKLGC*
Ga0066793_101342911	3300009029	Prmafrost Soil	MADDPNKQHVDSWFVSSQPYEYEYFKDTIKKAHPTKTDDEVAAAILACRKAIAPSEGREKLK
Ga0066793_101670252	3300009029	Prmafrost Soil	MADDPNKKHVDSWFVSSQPHEYEYFKKTVKDAHPTKTDDEVAQAILACRKAIAPSEGREKLKACVTKRLG*
Ga0105240_100100693	3300009093	Corn Rhizosphere	MADDPNKKHKDSWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAIFSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0105243_108627441	3300009148	Miscanthus Rhizosphere	RHQIYIRRLDMADDPNKKHVDGWFISNQPHEYEYFKTTIKKAFPSKSDDDVAHAIFSCRRSIAPSEGRAKLTECVHKRLRG*
Ga0105242_113032752	3300009176	Miscanthus Rhizosphere	MADDPNKRHVDAWFVSDQPHKYEYFKKTVKADFPSQFDDEVAEATLSCRKALAPSEGRAKLKECISKRLRGY*
Ga0105237_107170391	3300009545	Corn Rhizosphere	DDPNKKHNDGWFVSSQPHEYKYFFDSIKEICAKSADTEIAEAIFSCRKAIQPSEGRTKLTECVKKKLGC*
Ga0105238_100071823	3300009551	Corn Rhizosphere	MADDPNKKHNDGWFVSSQPHEYKYFFDSIKEICAKSAETEIAEAIFSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0126315_107188902	3300010038	Serpentine Soil	MADDLNKKHNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEIADAILSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0134128_100483892	3300010373	Terrestrial Soil	MADDPNKKHNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAIFSCRKAIQPSDGRAKLTECAKKKLGC*
Ga0134128_108122351	3300010373	Terrestrial Soil	ARINDNSKGTLTMADDPNKKHNDGWFVSSQPHEYKYFFDSIKEICAKSAETEIAEAIFSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0105239_111201562	3300010375	Corn Rhizosphere	GDSAMADDPNKKHNDGWFVSSQPHEYKYFFDSIKEICAKSAETEIAEAIFSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0105239_118566131	3300010375	Corn Rhizosphere	MADDPNKKHNDGWFVSSQPHEYQYFFDSIKKACSKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLSC*
Ga0105239_132478512	3300010375	Corn Rhizosphere	DPNKRQVDGWFVSSQPHEYEYLKKTIKDAFPHKSDDAIHDAILSCRKSLAPSEGRAKLTECVHKRLPG*
Ga0134124_100890042	3300010397	Terrestrial Soil	MADDPNKKHNDGWFVSSQPHEYQYFFDSIKKACSESSDTEIAEAILSCRKAIQPSEGRTKLTECVKKKLGC*
Ga0134124_108183392	3300010397	Terrestrial Soil	MADDPNKKHNDGWFVSSQPHEYQYFFDSIKKGCPKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0134127_126439942	3300010399	Terrestrial Soil	MSDDPNKKHVDSWFVSSQPHEYEYFKTTIKKAFPSKSDDEVAQAIFSCRLSIAPSEGRAKLTECVNKRLRG*
Ga0134127_137238681	3300010399	Terrestrial Soil	MADDPNKKHNDGWFVSSQPHEYKYFFDSIKEICAKSADTEIAEAIFSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0134122_100394972	3300010400	Terrestrial Soil	MADDPNKKHVDSWFVSSQPHEYEYFKTTVRKNFPTKSDDEVAQAILYCRKTLAPSEGRAKLTECVNKRLRGY*
Ga0134122_106044663	3300010400	Terrestrial Soil	MADDPNKKHVDGWFVSNQPYEYEYFKTTIKKAFHSKSDDEVAQAIFQCRQSIAPSEGRAKLTECVNRRLRG*
Ga0134122_120396401	3300010400	Terrestrial Soil	DRPIAKSLGGNMSDDPNKKHVDSWFVSSQPHEYEYFKNAIKKNFPAKSDDEVAQAILYSRKALAPSEGRAKLTECVNKRLRSY*
Ga0134122_133140351	3300010400	Terrestrial Soil	MADDPNKKHNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAIFSCRKAIQPSEGRAKLTE
Ga0134121_100859684	3300010401	Terrestrial Soil	MPDDPNKKHIDSWFVSSQPHEYQFFKARITSYAPGKSEEEIANAILTCRKSLAPSEGRAKLTECVKRRLGI*
Ga0134121_107103612	3300010401	Terrestrial Soil	VVWQNFAHFLNNQREDDMADDPNKKHVDGWFVSSQPHEYEYFKTTIAKAFPTKSDAEVADAILSCRKAIAPSEGRAKLTECVNKRLRGY*
Ga0134121_125739191	3300010401	Terrestrial Soil	MADDPNKKHNDGWFVSNQPHEYHYFFDSIKKACSNSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0134123_100135543	3300010403	Terrestrial Soil	MADDPNKKHNDGWFVSSQPHEYQYFFDSSKKACSESSDSEIAEAILSCRKVIQPSEGRTKLTECVKKKLGC*
Ga0138514_1001357381	3300011003	Soil	NKKHVDSWFVSSQQHEYDYFRKQMKDAFPRKSDDEVNQAILSCRKSLQPSEGRTKLTECVKKRLGG*
Ga0138514_1001431231	3300011003	Soil	RRGVPDTDNNIRRLDMADDPNKKHVDSWFVSTQPYEYEYFKNTIKKAFPLKSDDEVAQAILSCRKAIAPSEGRAKLTECVNKRLRGY*
Ga0137393_115839641	3300011271	Vadose Zone Soil	MSDDPNKKHVDSWFVSSQPHEYEYFKTTIKKHFPTKSDDEIAQAILYCRKTLAPSEGRAKLTECVNRRLRGY*
Ga0137374_108024111	3300012204	Vadose Zone Soil	MADDPNKKHVDGWFVSTQPHEYEYFKQTIKKAFPAKSDDEVAQAILACRKALAPSEGRAKLTECVNKRLRG*
Ga0137367_107699431	3300012353	Vadose Zone Soil	MADDPNKKHVDAWFVSSQPYEYEYFKSTIKKAFPSKSDDEVAQAILSCRKAIAPSEGRAKLTECVNKRLRGN*
Ga0137384_113002702	3300012357	Vadose Zone Soil	MTYDPNKKHVDGWFVSSQPLEYEYFKTTIKKSFPTKSDDDVAQAILYCRKTIAPSEGRAKLTECVNKRLRGY*
Ga0137360_110596672	3300012361	Vadose Zone Soil	MADDPNKKHVDGWFVSSQPYEYEYFRSTIKQAFPNKSDDEIADAILSCRKSIAPSEGRKKLTECVHKKLGG*
Ga0150984_1047953251	3300012469	Avena Fatua Rhizosphere	FSPAHRSNKRQLEGTPTMADDPNKKHNDGWFVSSQPHEYQYFFDSIKKACSKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0136635_101671152	3300012530	Polar Desert Sand	MADDPNKKHVDSWFVSSQPHEYEYFKQTVKTGHPTKTDDEIAHAILACRKAIAPSEGREKLKACVSKRLG*
Ga0137358_102160442	3300012582	Vadose Zone Soil	MADDPNKKHVDSWFVSSQPYEYEYFKTTIKKAFPSKSDDEVAQAILSCRKAVAPSEGRAKLTECVNKRLRGY*
Ga0137359_100029753	3300012923	Vadose Zone Soil	MADDPNKKHVDGWFVSSQPHEYEYFKSTIKKNFPTQSDDDVAQAILACRKSLVPSEGRAKLTECVNKRLRGY*
Ga0157377_100341863	3300014745	Miscanthus Rhizosphere	KKHNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAIFSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0157379_110772581	3300014968	Switchgrass Rhizosphere	PNKKHNDGWFVSSQPHEYKYFFDSIKEICAKSADTEIAEAIFSCRKAIQPSEGRAKLTECVKKKLGC*
Ga0167633_1122902	3300015069	Glacier Forefield Soil	MPDDPNKKHVDSWFVSSQPHEYEYFKKTIAKAFPSKSDEEVADAILSCRKAIAPSEGRAKLTECVNKQLRGY*
Ga0132256_1024483301	3300015372	Arabidopsis Rhizosphere	GWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC
Ga0184619_100003657	3300018061	Groundwater Sediment	MADDPNKKYVDAWFVSSQPYEYEYFKTTIKKAFPSKSDDEVAQAILSCRRAIAPSEGRAKLTECVNKRLRGY
Ga0190272_101703341	3300018429	Soil	MADDPNKKHVDGWFVSSQPHEYEYFKKTIAEAFPSKSDEEIADAILSCRKAIAPSEGRAKLTDCVKKKLRGY
Ga0193707_100008122	3300019881	Soil	MADDPNKKHVDSWFVSSQPHEYDYFRKQMKDAFPKKSDDEVNQAILSCRKSLAPSEGRAKLTECVRKRLGG
Ga0193721_10350033	3300020018	Soil	MADDPNKKHVDGWFVSSQSYEYDYFKSTIKRTFPHKSDDAVAEAILSCRKSIAPSEGRSKLTECVHKKLGG
Ga0182009_105185561	3300021445	Soil	MADDPNKKHNDGWFVSSQPHEYQYFFDSIKKACSRSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC
Ga0247672_10580302	3300024187	Soil	MADDPNKKHVDSWFVSSQPYEYEYFKTTIKKAFPLKSDDEVAQAILSCRKAIASEGRAKLTECVNKRLRGY
Ga0207710_100523031	3300025900	Switchgrass Rhizosphere	GIQSGHGEYVRTRRKCTMTDDPNKKHNDGWFVSNQPHEYQYFFDSIKKVCSKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC
Ga0207647_100034173	3300025904	Corn Rhizosphere	MADDPNKKHNDGWFVSSQPHEYKYFFDSIKEICAKSADTEIAEAIFSCRKAIQPSEGRTKLTECVKKKLGC
Ga0207684_1000025162	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MADDPNKKHNDGWFVSSQPHEYQYFFDSIKKACSKSSDTEIAEAIFSCRKAIQPSEGRAKLTECVKKKLGC
Ga0207695_105654572	3300025913	Corn Rhizosphere	MADDPNKKHKDSWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAIFSCRKAIQPSEGRAKLTECVKKKLGC
Ga0207670_107671902	3300025936	Switchgrass Rhizosphere	MTDDPNKKHNDGWFVSNQPHEYQYFFDSIKKVCTKSSDTDIAEAILSCRKAIQPSEGRAKLTECVKNKLGC
Ga0207691_105574771	3300025940	Miscanthus Rhizosphere	NKRQLEGTLTMADDPNKKHNDGWFVSSQPHEYKYFFDSIKEICAKSADTEIAEAIFSCRKAIQPSEGRTKLTECVKKKLGC
Ga0207711_1000069218	3300025941	Switchgrass Rhizosphere	MTDDPNKKHNDGWFVSNQPHEYQYFFDSIKKVCSKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC
Ga0207639_100646152	3300026041	Corn Rhizosphere	MADDPNKKHNDGWFVSSQPHEYKYVFDSIKEICAKSADTEIAEAIFSCRKAIQPSEGRTKLTECVKKS
Ga0207511_10011013	3300026802	Soil	MADDPNKKHVDSWFVSTQPYEYEYFKTTIKKSFPTKSDDEVAQAILHCRKTLAPSEGRAKLTECVNKRLRGY
Ga0247689_10456251	3300028281	Soil	MADDPNKKHVDSWFVSSQPYEYEYFKTTIKKAFPLKSDDEVAQAILSCRKAIAPSEGRAKLTECVNKRLRGY
Ga0268265_118207341	3300028380	Switchgrass Rhizosphere	MADDPNKKHNDGWFVSSQPHEYQYFFDSIKKACSKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC
Ga0268264_100362915	3300028381	Switchgrass Rhizosphere	MADDPNKKHVDGWFLSSQPYEYEYFKATIKKAFPSKSDEEVAQAILSCRRSIAPSEGRAKLTECVNTRLRG
Ga0268264_104599401	3300028381	Switchgrass Rhizosphere	RLRKTATCGPDVDQAIAKSLGGNMSDDPNKKHVDSWFVSSQPHEYEYFKNAIKKNFPAKSDDEVAQAILYCRKTLAPSEGRAKLTECVNKRLQNY
Ga0268264_122296181	3300028381	Switchgrass Rhizosphere	MADDPNKKHNDGWFVSSQPHEYKYVFDSIKEICAKSADTEIAEAIFSCRKAIQPSEGRAKLTECVKKKLGC
Ga0268243_11272851	3300030510	Soil	VTDKIYENPEETFTMADDPNKKHNDGWFVSNQPHEYQYFFDSIKKACSKSSDTEIAEAILSCRKAIQPSEGRAKLTECVKKKLGC
Ga0308194_102806661	3300031421	Soil	NKKHVDSWFVSSQPHEYDYFRKQMKDAFPKKSDDEVNQAILSCRKSLAPSEGRAKLTECVRKRLGA
Ga0307513_102437072	3300031456	Ectomycorrhiza	MADNPNKKHIDGWFVSSQPHEYEYFRSTIKRAFPSQSDDAIMQAILSCRESIGPSEGRQKLTDCVHRKLRGY
Ga0214473_120226292	3300031949	Soil	MADDPNKKHVDSWFVSSQPHEYEYFKASIAKAFPTKSDEEIADAILSCRKAIAPSEGRAKLTECVNKKLRGY
Ga0299912_100310287	3300033489	Soil	MADDPNLKHVDSWFVSSQPWEYSYFKDSIKKAHPTKTDAEVAEAILACRKAIAPSEGREKLKACVSGRLS

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign