Metagenome / Metatranscriptome Family F095996

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095996
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	61 residues
Representative Sequence	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL
Number of Associated Samples	71
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.51 %
% of genes near scaffold ends (potentially truncated)	36.19 %
% of genes from short scaffolds (< 2000 bps)	81.90 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.095 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (60.000 % of family members)
Environment Ontology (ENVO)	Unclassified (61.905 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 84.75% β-sheet: 0.00% Coil/Unstructured: 15.25%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF11154	DUF2934	8.57
PF14023	DUF4239	2.86
PF00665	rve	1.90
PF00872	Transposase_mut	1.90
PF13408	Zn_ribbon_recom	0.95
PF03401	TctC	0.95
PF08483	Obsolete Pfam Family	0.95
PF03118	RNA_pol_A_CTD	0.95
PF07508	Recombinase	0.95
PF05930	Phage_AlpA	0.95
PF13751	DDE_Tnp_1_6	0.95
PF13683	rve_3	0.95
PF00563	EAL	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	1.90
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	1.90
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	1.90
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	1.90
COG4584	Transposase	Mobilome: prophages, transposons [X]	1.90
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	0.95
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.95
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.95
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.95
COG3311	DNA-binding transcriptional regulator AlpA	Transcription [K]	0.95
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.95
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.95
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.10 %
Unclassified	root	N/A	41.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.10 %
Unclassified	root	N/A	41.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.10 %
Unclassified	root	N/A	41.90 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	51.43 %
Unclassified	root	N/A	41.90 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	51.43 %
Unclassified	root	N/A	41.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	32.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	14.29 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	9.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.90 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	9.52 %
Bradyrhizobium genosp. SA-3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium genosp. SA-3	0.95 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002886\|JGI25612J43240_1048821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	622	Open in IMG/M
3300002917\|JGI25616J43925_10261203	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300005993\|Ga0080027_10327095	Not Available	612	Open in IMG/M
3300006047\|Ga0075024_100136608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1106	Open in IMG/M
3300006050\|Ga0075028_100291126	Not Available	908	Open in IMG/M
3300006050\|Ga0075028_100587803	Not Available	660	Open in IMG/M
3300006050\|Ga0075028_101033006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300006172\|Ga0075018_10288648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	805	Open in IMG/M
3300006172\|Ga0075018_10375937	Not Available	717	Open in IMG/M
3300006172\|Ga0075018_10823290	Not Available	511	Open in IMG/M
3300007255\|Ga0099791_10369456	Not Available	688	Open in IMG/M
3300007258\|Ga0099793_10006395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4337	Open in IMG/M
3300007258\|Ga0099793_10252614	Not Available	851	Open in IMG/M
3300007265\|Ga0099794_10012118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3709	Open in IMG/M
3300007265\|Ga0099794_10544038	Not Available	613	Open in IMG/M
3300007265\|Ga0099794_10548347	Not Available	610	Open in IMG/M
3300007788\|Ga0099795_10168334	Not Available	909	Open in IMG/M
3300009038\|Ga0099829_10021772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4417	Open in IMG/M
3300009143\|Ga0099792_10324073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	922	Open in IMG/M
3300009143\|Ga0099792_10984854	Not Available	562	Open in IMG/M
3300010159\|Ga0099796_10050053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1447	Open in IMG/M
3300010159\|Ga0099796_10167237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	875	Open in IMG/M
3300011269\|Ga0137392_10080745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2524	Open in IMG/M
3300011269\|Ga0137392_11634030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	502	Open in IMG/M
3300011270\|Ga0137391_10594276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	928	Open in IMG/M
3300011271\|Ga0137393_10772153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	822	Open in IMG/M
3300011444\|Ga0137463_1263736	Not Available	640	Open in IMG/M
3300012189\|Ga0137388_11855630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300012189\|Ga0137388_11974866	Not Available	512	Open in IMG/M
3300012199\|Ga0137383_10723351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	727	Open in IMG/M
3300012202\|Ga0137363_10081391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2413	Open in IMG/M
3300012202\|Ga0137363_10451420	Not Available	1076	Open in IMG/M
3300012202\|Ga0137363_11708847	Not Available	522	Open in IMG/M
3300012203\|Ga0137399_10011558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5350	Open in IMG/M
3300012203\|Ga0137399_10061814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2774	Open in IMG/M
3300012203\|Ga0137399_10162462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1792	Open in IMG/M
3300012203\|Ga0137399_10714586	Not Available	843	Open in IMG/M
3300012205\|Ga0137362_10451942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1112	Open in IMG/M
3300012361\|Ga0137360_10137657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1920	Open in IMG/M
3300012362\|Ga0137361_10395532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1269	Open in IMG/M
3300012363\|Ga0137390_11731163	Not Available	558	Open in IMG/M
3300012683\|Ga0137398_10621591	Not Available	748	Open in IMG/M
3300012685\|Ga0137397_10125691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1891	Open in IMG/M
3300012685\|Ga0137397_10474437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium genosp. SA-3	932	Open in IMG/M
3300012918\|Ga0137396_10029773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3600	Open in IMG/M
3300012922\|Ga0137394_11055550	Not Available	674	Open in IMG/M
3300012922\|Ga0137394_11103403	Not Available	657	Open in IMG/M
3300012923\|Ga0137359_11100876	Not Available	680	Open in IMG/M
3300012925\|Ga0137419_10049533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2701	Open in IMG/M
3300012925\|Ga0137419_10197739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1487	Open in IMG/M
3300012925\|Ga0137419_10357121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	1132	Open in IMG/M
3300012927\|Ga0137416_10802913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	832	Open in IMG/M
3300012929\|Ga0137404_10058954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2972	Open in IMG/M
3300012930\|Ga0137407_10754444	Not Available	918	Open in IMG/M
3300012944\|Ga0137410_10557750	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300012944\|Ga0137410_10670473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	862	Open in IMG/M
3300015052\|Ga0137411_1111529	Not Available	662	Open in IMG/M
3300015052\|Ga0137411_1259505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	600	Open in IMG/M
3300015242\|Ga0137412_10156391	All Organisms → cellular organisms → Bacteria	1836	Open in IMG/M
3300015245\|Ga0137409_10363889	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300015245\|Ga0137409_11500527	Not Available	522	Open in IMG/M
3300015264\|Ga0137403_10224530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1799	Open in IMG/M
3300018028\|Ga0184608_10152584	Not Available	996	Open in IMG/M
3300018054\|Ga0184621_10271417	Not Available	601	Open in IMG/M
3300019789\|Ga0137408_1126245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2098	Open in IMG/M
3300019866\|Ga0193756_1005230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1563	Open in IMG/M
3300019882\|Ga0193713_1006078	Not Available	3774	Open in IMG/M
3300019882\|Ga0193713_1021594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1908	Open in IMG/M
3300019883\|Ga0193725_1009670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2744	Open in IMG/M
3300020004\|Ga0193755_1067439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1159	Open in IMG/M
3300020004\|Ga0193755_1070508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	1129	Open in IMG/M
3300020004\|Ga0193755_1205667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	558	Open in IMG/M
3300020021\|Ga0193726_1301768	Not Available	620	Open in IMG/M
3300020062\|Ga0193724_1062651	Not Available	781	Open in IMG/M
3300020199\|Ga0179592_10039541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2137	Open in IMG/M
3300020199\|Ga0179592_10246503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	803	Open in IMG/M
3300021086\|Ga0179596_10487179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	625	Open in IMG/M
3300021418\|Ga0193695_1135032	Not Available	507	Open in IMG/M
3300024288\|Ga0179589_10080754	Not Available	1294	Open in IMG/M
3300024330\|Ga0137417_1240261	Not Available	534	Open in IMG/M
3300026285\|Ga0209438_1025246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1982	Open in IMG/M
3300026285\|Ga0209438_1062773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1221	Open in IMG/M
3300026291\|Ga0209890_10286948	Not Available	501	Open in IMG/M
3300026340\|Ga0257162_1004170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1618	Open in IMG/M
3300026340\|Ga0257162_1024696	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300026341\|Ga0257151_1039919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300026358\|Ga0257166_1016575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	950	Open in IMG/M
3300026361\|Ga0257176_1009012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1275	Open in IMG/M
3300026369\|Ga0257152_1018350	Not Available	746	Open in IMG/M
3300026376\|Ga0257167_1012976	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300026377\|Ga0257171_1048273	Not Available	737	Open in IMG/M
3300026475\|Ga0257147_1010113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1239	Open in IMG/M
3300026507\|Ga0257165_1046195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	779	Open in IMG/M
3300026508\|Ga0257161_1065278	Not Available	743	Open in IMG/M
3300026508\|Ga0257161_1080638	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300026551\|Ga0209648_10577715	Not Available	622	Open in IMG/M
3300026557\|Ga0179587_10410907	Not Available	883	Open in IMG/M
3300026557\|Ga0179587_10573310	Not Available	742	Open in IMG/M
3300027381\|Ga0208983_1099390	Not Available	538	Open in IMG/M
3300027663\|Ga0208990_1009553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3229	Open in IMG/M
3300027846\|Ga0209180_10045474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2409	Open in IMG/M
3300031093\|Ga0308197_10460046	Not Available	512	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.48%
Aquatic	Environmental → Aquatic	9.52%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.48%
Sediment	Environmental → Aquatic → Sediment	9.52%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.52%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.90%
Loam	Environmental → Terrestrial → Soil → Loam	1.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	70.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.76%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	60.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.48%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.90%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.95%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026341	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026369	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-A	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25612J43240_10488213	3300002886	Grasslands Soil	GEFREGLTMSTILSGIELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKLQSLV*
JGI25616J43925_102612031	3300002917	Grasslands Soil	MSTILSGIELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKLQSLV*
Ga0080027_103270951	3300005993	Prmafrost Soil	MSTILSGIKLEGIVSKLMAAEAEILHLAIEEENVSEAPSDLWGVFEMLQEIILKIQSLL*
Ga0075024_1001366082	3300006047	Watersheds	MSKILCGIKLDVIVSKLMAAEAEILDLVIEEENVGEAASDLWGVFEMLQEIILKIQSLL*
Ga0075028_1002911261	3300006050	Watersheds	MSKILSGVELEVIVSTLIAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL*
Ga0075028_1005878032	3300006050	Watersheds	MSKILSGIELEVIVSKLMAAEAEILDLVIEEENVSEAASDLWGVFEMLQEIILKIQSLL*
Ga0075028_1010330061	3300006050	Watersheds	EGLTMSKILSGIELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEVILKIQSLL*
Ga0075018_102886481	3300006172	Watersheds	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENASEAASDLWGVIELLQEIILKLQSLL*
Ga0075018_103759371	3300006172	Watersheds	MSKILSGIELEVIVSKLMAAEAEILDLVIEEENVSEAASDLWGVFEMLQEIIPRIQSLL*
Ga0075018_108232901	3300006172	Watersheds	GGRHWGGVREGLTMSKILSGVELEVIVSKLIAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL*
Ga0099791_103694563	3300007255	Vadose Zone Soil	MSKILSGIELEVVVSKLIAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL*
Ga0099793_100063951	3300007258	Vadose Zone Soil	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSL
Ga0099793_102526141	3300007258	Vadose Zone Soil	KILSGTELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKIQSLL*
Ga0099794_100121182	3300007265	Vadose Zone Soil	MSKILSGIELEVVVSKLIAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTW*
Ga0099794_105440381	3300007265	Vadose Zone Soil	MSKILSGTELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKIQSLL*
Ga0099794_105483471	3300007265	Vadose Zone Soil	GGVREGLTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL*
Ga0099795_101683342	3300007788	Vadose Zone Soil	MIDRRASLGGVREGLTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL*
Ga0099829_100217722	3300009038	Vadose Zone Soil	MSSGIELEVIVSKLMAAEAEILHLVIEEENVSEAASDLWGVFEMLQEIILKLQSLLQTL*
Ga0099792_103240732	3300009143	Vadose Zone Soil	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLRGVIEMLQEIILKLQSLL*
Ga0099792_109848541	3300009143	Vadose Zone Soil	MSKILSGIELEVVVSKLIAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL*
Ga0099796_100500534	3300010159	Vadose Zone Soil	MSTILSRIELEGIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKIQSLL*
Ga0099796_101672372	3300010159	Vadose Zone Soil	TMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVFEMLQEIILKLQSLV
Ga0137392_100807453	3300011269	Vadose Zone Soil	MSSGIELEVIVSKLMAAEAEILHLVIEEENVSEAASDLWGVFEMLQEIILLQSLLQTL*
Ga0137392_116340301	3300011269	Vadose Zone Soil	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKL
Ga0137391_100874323	3300011270	Vadose Zone Soil	MSSGIELEVIVSKLMAAEAEILHLVIEEENVSEAASDLWGVF*
Ga0137391_105942762	3300011270	Vadose Zone Soil	MSKILSGIELEVIVSKLMAAKAEILHLAIEEENVSEAASDLWGVVEMLQEIILRIQSLL*
Ga0137393_107721531	3300011271	Vadose Zone Soil	MSTILSGIELEGIVSKLMAAEAEILHLAIEEENVSEAPSDLWGVFEMLQEIILKLQSLLQTL*
Ga0137463_12637362	3300011444	Soil	MSTILSGIELEGIVSKLMAAEAEILHLAIEEENVSEAPSDLWGVFEMLQDIILKIQSLL*
Ga0137388_118556301	3300012189	Vadose Zone Soil	LSGIELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEVILKIQSLL*
Ga0137388_119748662	3300012189	Vadose Zone Soil	AMIDRRASSVGVREGLTMSKILSVIEIEFIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL*
Ga0137383_107233512	3300012199	Vadose Zone Soil	MSTILSGIELEGIVSKLMAAEAEILHLAIEEENVSEAPSDLWGVSEMLQEIILKIQSLL*
Ga0137363_100813915	3300012202	Vadose Zone Soil	MSTILSGIELEGIVSKLMAAEAEILHLAIEEENVSEAPSDLWGVFEMLQEIILKIQSLL*
Ga0137363_104514203	3300012202	Vadose Zone Soil	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSVLQTL*
Ga0137363_117088472	3300012202	Vadose Zone Soil	MSKILSGIELEAIVSKLMAAKAEILYLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL
Ga0137399_100115584	3300012203	Vadose Zone Soil	MSTILSGIELEGIVAKLMVAEAEILHLAIEEENVSEAPSDLWGVFEMLQEIILKIQSLL*
Ga0137399_100618143	3300012203	Vadose Zone Soil	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL*
Ga0137399_101624624	3300012203	Vadose Zone Soil	MSTILSGIELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILK
Ga0137399_107145861	3300012203	Vadose Zone Soil	GLTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLRGVIEMLQEIILKLQSLL*
Ga0137362_104519422	3300012205	Vadose Zone Soil	MSKILSGIELEAIVSKLMAAKAEILYLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL*
Ga0137360_101376573	3300012361	Vadose Zone Soil	MSKILSGTELEVIVSKLMAAEAEILHLAIEEENVSEAPSDLWGVFEMLQEIILKIQSLL*
Ga0137361_103955322	3300012362	Vadose Zone Soil	MSKILSGTELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVIEMLQEIILKLQSVLQTL*
Ga0137390_117311631	3300012363	Vadose Zone Soil	GLTMSSGIELEVIVSKLMAAEAEILHLVIEEENVSEAASDLWGVFEMLQEIILKLQSLLQTL*
Ga0137398_106215911	3300012683	Vadose Zone Soil	MSKILSGVELEVIVSKLIAAKAEILHLIIEEENVSEAASDLRGVIEMLQEIILKLQSLL*
Ga0137398_110735621	3300012683	Vadose Zone Soil	MSTILSGIELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFE
Ga0137397_101256913	3300012685	Vadose Zone Soil	LEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL*
Ga0137397_104744371	3300012685	Vadose Zone Soil	MIDRRASSGGVREGLTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQE
Ga0137396_100297731	3300012918	Vadose Zone Soil	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEGASDLWGVIEMLQEIILKLQSVLQTL*
Ga0137394_110555502	3300012922	Vadose Zone Soil	LRRIGERHSGEFREGLTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDMWGVIEMLQEIILKLQSVLQTL*
Ga0137394_111034032	3300012922	Vadose Zone Soil	LRRIGERHSGEFREGLTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL*
Ga0137359_111008762	3300012923	Vadose Zone Soil	MSKILSGIELEAIVSKLMAAKAEILYLIIEEENVSEAASDLWGVIEMLQEIILKLQSVLQTL*
Ga0137419_100495331	3300012925	Vadose Zone Soil	MSTILSGIELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEML
Ga0137419_101977392	3300012925	Vadose Zone Soil	MSKILSGTELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEML
Ga0137419_103571211	3300012925	Vadose Zone Soil	MSTILSGIELEGIVAKLMVAEAEILHLAIEEENVSEAPSDLWGVFEMLQEI
Ga0137416_108029131	3300012927	Vadose Zone Soil	MSKILSGIELEVIVSKLMAAEAEILDLVIEEENVSEAASDLWGVFEMLQEIILRI
Ga0137404_100589544	3300012929	Vadose Zone Soil	MSKILSGTELEVIVSKLMAAEAEILHLAIEDENVSEAASDLWGVFEMLQEIILKIQSLL*
Ga0137407_107544441	3300012930	Vadose Zone Soil	MSTILSGIELEGIVSKLMVAEAEILHLAIEEENVSEAPSDLWGVFEMLQEIILKIQSLL*
Ga0137410_105577501	3300012944	Vadose Zone Soil	MSTILSGIELEVIVSKLMAAEAEILHLAIEAENVSEAASDLWGVFEMLQEIILKLQSLA*
Ga0137410_106704731	3300012944	Vadose Zone Soil	MSKILSGIELEVVVSKLIAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQ
Ga0137411_11115292	3300015052	Vadose Zone Soil	MIDRRASLGGVREGLTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL*
Ga0137411_12595051	3300015052	Vadose Zone Soil	MSKILSGVELEVIVSKLIAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL*
Ga0137412_101563913	3300015242	Vadose Zone Soil	MSTILSGIELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKIQSLL*
Ga0137409_103638892	3300015245	Vadose Zone Soil	ELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKIQSLL*
Ga0137409_115005271	3300015245	Vadose Zone Soil	KILSGIELEVIVSKLMAAEAEILDLVIEEENVSEAASDLWGVFEMLQEIILRIQSLL*
Ga0137403_102245301	3300015264	Vadose Zone Soil	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL*
Ga0184608_101525841	3300018028	Groundwater Sediment	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL
Ga0184621_102714172	3300018054	Groundwater Sediment	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVFEMLQEIILKLQSLLQTL
Ga0137408_11262453	3300019789	Vadose Zone Soil	MSKILSGTELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKIQSLL
Ga0193756_10052302	3300019866	Soil	MSKILSGIELEVIVSKLMAAKAEILHLAIEEENVSEAASDLWGVFEMLQEIILKLQSLV
Ga0193713_10060784	3300019882	Soil	MSTILSGIELEGIVSKLMVAEAEILHLAIEEENVSEAPSDLWGVFEMLQEIILKIQSLL
Ga0193713_10215942	3300019882	Soil	MSKILSGIELEVVVSKLIAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL
Ga0193725_10096705	3300019883	Soil	MSKILSGIELEVIVSKLMAAKAELLHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL
Ga0193755_10674393	3300020004	Soil	MAKILSGIELEVIVSKLMAAEAEILYLAIEEENVSEAASDLWGVFEMLQEVILKIQSLL
Ga0193755_10705082	3300020004	Soil	MSTILSGIELEGIVSKLMVAEAEILHLAIEEKNVSEAPSDLWGVFEMLQEIILKIQSLL
Ga0193755_12056671	3300020004	Soil	GGVREGLTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL
Ga0193726_13017681	3300020021	Soil	HWGGVREGLTMSKILSGIELEVIVSKLMAAKAELLHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL
Ga0193724_10626511	3300020062	Soil	MIDRRASSGGVREGLTMSKILSGIELEVIVSKLMAAKAELLHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL
Ga0179592_100395411	3300020199	Vadose Zone Soil	MSKILSGTELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKLQSLV
Ga0179592_102465032	3300020199	Vadose Zone Soil	MSTILSGIELEGIVSKLMAAEAEILHLAIEEENVSEAPSDLWGVFEMLQEIILKIQSL
Ga0179596_102842192	3300021086	Vadose Zone Soil	MSSGIELEVIVSKLMAAEAEILHLVIEEENVSEAASDLWGVF
Ga0179596_104871791	3300021086	Vadose Zone Soil	RGEFREGLTMSKILSGIELEVIVSKLMAAKAEILHLAIEEENVSEAASDLWGVVEMLQEIILRIQSLL
Ga0193695_11350321	3300021418	Soil	ILSGTELEAIISKLRAAEAELRLIIEEEEDSEAASDLRGVIENLQIVILKIQSLL
Ga0179589_100807542	3300024288	Vadose Zone Soil	LGGVREGLTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVFEMLQEIILKIQSLL
Ga0137417_12402611	3300024330	Vadose Zone Soil	MSKILSGTELEVIVSKLMAAEAEILHLAIEEENVSEAPSDLWGVFEMLQEIILKIQSLL
Ga0209438_10252464	3300026285	Grasslands Soil	MSTILSGIELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKLQSLV
Ga0209438_10627733	3300026285	Grasslands Soil	MSTILSGIELEGIVSKLMAAEAEILHLAIEEENVSEAPSDLWGVFEMLQEIILKIQSLL
Ga0209890_102869481	3300026291	Soil	MSKILSGIELEVIVSKLMAAKAEILHLAIEEENVSEAASDLWGVVEMLQ
Ga0257162_10041702	3300026340	Soil	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLRGVIEMLQEIILKLQSLL
Ga0257162_10246962	3300026340	Soil	MSTILSGIELEVIVSKLMAAEAEILHLAIEEENVSEAPSDLWGVFEMLQ
Ga0257151_10399192	3300026341	Soil	YLWMIDRRASLGGVREGLTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL
Ga0257166_10165751	3300026358	Soil	TMSTILSGIELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKLQSLV
Ga0257176_10090122	3300026361	Soil	LGGVREGLTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL
Ga0257152_10183501	3300026369	Soil	LGGVREGLTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLRGVIEMLQEIILKLQSLL
Ga0257167_10129761	3300026376	Soil	MSTILSGIELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL
Ga0257171_10482732	3300026377	Soil	VYVTGRHWDEVGEGLTMSKILSGTELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKLQSLV
Ga0257147_10101131	3300026475	Soil	MSKILSGIELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKLQSLV
Ga0257165_10461952	3300026507	Soil	MSKILSGVELEVIVSKLIAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL
Ga0257161_10652781	3300026508	Soil	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLLQTL
Ga0257161_10806381	3300026508	Soil	MSTILSGIELEVIVSKLMAAEAEILHLAIEEENVSEAASDLWGVFEMLQEIILKIQSLL
Ga0209648_105777151	3300026551	Grasslands Soil	MSSGIELEVIVSKLMAAEAEILHLVIEEENVSEAASDLWGVIEMLQEIILKLQSVLQTL
Ga0179587_104109072	3300026557	Vadose Zone Soil	MSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLQGVIEMLQEIILKLQSLL
Ga0179587_105733101	3300026557	Vadose Zone Soil	LTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIMLKLQSL
Ga0208983_10993902	3300027381	Forest Soil	MSKILSGTELEVIVSKLMAAEAEILHLAIEEENVSESPSDLWGVFEMLQEIILKIQSLL
Ga0208990_10095535	3300027663	Forest Soil	MSTILSGIELEVIVSKLMAAEAEILHLAIEEENVSEASDLWGVFEMLQEIILKIQSLL
Ga0209180_100454743	3300027846	Vadose Zone Soil	MSSGIELEVIVSKLMAAEAEILHLVIEEENVSEAASDLWGVFEMLQEIILKLQSLLQTL
Ga0308197_104600463	3300031093	Soil	FREGLTMSKILSGIELEVIVSKLMAAKAEILHLIIEEENVSEAASDLWGVIEMLQEIILKLQSLL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095996

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences