Metagenome Family F095993

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095993
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	43 residues
Representative Sequence	AGHMADDGFAARLLTSAEPGAAGGRVILAEAARDALRAAGL
Number of Associated Samples	94
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.67 %
% of genes near scaffold ends (potentially truncated)	86.67 %
% of genes from short scaffolds (< 2000 bps)	84.76 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (96.190 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.048 % of family members)
Environment Ontology (ENVO)	Unclassified (24.762 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.619 % of family members)

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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62 1JGI12270J11330_1000276410 2Ga0063454_1012186581 3Ga0066683_107429002 4Ga0070668_1017713322 5Ga0070694_1015482782 6Ga0073909_102819872 7Ga0070763_101295171 8Ga0066903_1073176491 9Ga0066696_101387853 10Ga0066696_105751071 11Ga0075029_1008791581 12Ga0075030_1005535141 13Ga0075018_103745862 14Ga0068871_1015211512 15Ga0066660_108012892 16Ga0075424_1023441441 17Ga0105247_102623731 18Ga0116222_10071115 19Ga0126374_105606442 20Ga0134065_102398431 21Ga0134080_102129812 22Ga0126376_109515291 23Ga0126372_120527602 24Ga0126378_101876992 25Ga0105239_102680931 26Ga0126381_1000917691 27Ga0126381_1048986791 28Ga0126383_122891991 29Ga0137392_112945402 30Ga0153924_11399401 31Ga0137382_100556602 32Ga0137382_102915962 33Ga0137377_104843482 34Ga0137384_111364162 35Ga0137375_101763503 36Ga0150984_1144012011 37Ga0157329_10156941 38Ga0157350_10566741 39Ga0137410_105343211 40Ga0164302_107240631 41Ga0126369_109919492 42Ga0126369_113988483 43Ga0164309_108367601 44Ga0164304_108134342 45Ga0157369_122927611 46Ga0157378_131328902 47Ga0132255_1060453522 48Ga0182036_111084752 49Ga0182034_114649912 50Ga0182040_104357141 51Ga0182039_107889171 52Ga0187801_102146031 53Ga0187779_110424582 54Ga0187783_100435321 55Ga0187783_112505562 56Ga0187765_102720152 57Ga0066667_113023991 58Ga0193747_11127871 59Ga0193693_10337872 60Ga0210402_118390931 61Ga0210409_115117952 62Ga0224564_10045613 63Ga0207700_100795194 64Ga0207691_101293083 65Ga0207683_117670932 66Ga0209473_11130242 67Ga0208236_10001313 68Ga0208199_10052274 69Ga0208324_10141181 70Ga0209074_100409442 71Ga0209074_102963002 72Ga0209811_102365871 73Ga0209465_104963852 74Ga0209698_101242073 75Ga0209526_107620741 76Ga0318516_107641242 77Ga0318571_101682251 78Ga0318515_102050402 79Ga0318542_102027872 80Ga0318542_106999921 81Ga0318496_100103434 82Ga0306918_112139352 83Ga0318492_107659732 84Ga0307475_109792482 85Ga0318521_107574101 86Ga0318557_101197641 87Ga0318557_102445261 88Ga0318576_105087472 89Ga0318520_109242211 90Ga0306921_100386336 91Ga0306921_103227481 92Ga0306926_118133672 93Ga0318530_100580363 94Ga0306922_112269402 95Ga0318506_104277271 96Ga0318575_103431642 97Ga0318518_106194842 98Ga0318518_107261172 99Ga0307471_1032326501 100Ga0335069_111886021 101Ga0335075_104688661 102Ga0335073_108549041 103Ga0335077_106350104 104Ga0335077_107035171 105Ga0372943_1202793_364_489
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62 1JGI12270J11330_1000276410 2Ga0063454_1012186581 3Ga0066683_107429002 4Ga0070668_1017713322 5Ga0070694_1015482782 6Ga0073909_102819872 7Ga0066696_101387853 8Ga0075030_1005535141 9Ga0126374_105606442 10Ga0134065_102398431 11Ga0126376_109515291 12Ga0126381_1000917691 13Ga0126381_1048986791 14Ga0137384_111364162 15Ga0187783_100435321 16Ga0210402_118390931 17Ga0209074_102963002 18Ga0318516_107641242 19Ga0318492_107659732 20Ga0306922_112269402 21Ga0335075_104688661 22Ga0335073_108549041 23Ga0335077_106350104
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40. 1Ga0224564_10045613 2JGI12270J11330_1000276410 3Ga0063454_1012186581 4Ga0073909_102819872 5Ga0075030_1005535141 6Ga0126374_105606442 7Ga0105239_102680931 8Ga0137382_100556602 9Ga0137384_111364162 10Ga0164304_108134342 11Ga0157378_131328902 12Ga0132255_1060453522 13Ga0182036_111084752 14Ga0182039_107889171 15Ga0187783_100435321 16Ga0187783_112505562 17Ga0066667_113023991 18Ga0193747_11127871 19Ga0193693_10337872 20Ga0210402_118390931 21Ga0207700_100795194 22Ga0209074_102963002 23Ga0318515_102050402 24Ga0318542_106999921 25Ga0306918_112139352 26Ga0318492_107659732 27Ga0318520_109242211 28Ga0306921_100386336 29Ga0306922_112269402 30Ga0318518_106194842 31Ga0335069_111886021 32Ga0335075_104688661 33Ga0335073_108549041 34Ga0335077_106350104
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.83% β-sheet: 0.00% Coil/Unstructured: 52.17%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF02771	Acyl-CoA_dh_N	71.43
PF02641	DUF190	3.81
PF01636	APH	2.86
PF13242	Hydrolase_like	1.90
PF00027	cNMP_binding	0.95
PF07690	MFS_1	0.95
PF10415	FumaraseC_C	0.95
PF02770	Acyl-CoA_dh_M	0.95
PF04972	BON	0.95
PF01740	STAS	0.95

Showing 1 to 10 of 14 entries

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Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	72.38
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.81
COG1993	PII-like signaling protein	Signal transduction mechanisms [T]	3.81
COG0120	Ribose 5-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.95
COG3693	Endo-1,4-beta-xylanase, GH35 family	Carbohydrate transport and metabolism [G]	0.95

Showing 1 to 5 of 5 entries

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.19 %
Unclassified	root	N/A	3.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.19 %
Unclassified	root	N/A	3.81 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.19 %
Unclassified	root	N/A	3.81 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	60.95 %
Unclassified	root	N/A	3.81 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	60.95 %
Unclassified	root	N/A	3.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	22.86 %
Unclassified	root	N/A	3.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.90 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	5.71 %
Unclassified	root	N/A	3.81 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.86 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.90 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	5.71 %
Unclassified	root	N/A	3.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
Streptacidiphilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus	0.95 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.95 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	5.71 %
Unclassified	root	N/A	3.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
Streptacidiphilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus	0.95 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	5.71 %
Unclassified	root	N/A	3.81 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.95 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.86 %
Streptacidiphilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus	0.95 %
Streptomyces sp. GbtcB6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. GbtcB6	0.95 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	5.71 %
Unclassified	root	N/A	3.81 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10002764	All Organisms → cellular organisms → Bacteria	12813	Open in IMG/M
3300004081\|Ga0063454_101218658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	624	Open in IMG/M
3300005172\|Ga0066683_10742900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	577	Open in IMG/M
3300005347\|Ga0070668_101771332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	568	Open in IMG/M
3300005444\|Ga0070694_101548278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	562	Open in IMG/M
3300005526\|Ga0073909_10281987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	749	Open in IMG/M
3300005610\|Ga0070763_10129517	All Organisms → cellular organisms → Bacteria	1300	Open in IMG/M
3300005764\|Ga0066903_107317649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	571	Open in IMG/M
3300006032\|Ga0066696_10138785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1505	Open in IMG/M
3300006032\|Ga0066696_10575107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	734	Open in IMG/M

Showing 1 to 10 of 105 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.62%
Host-Associated	Host-Associated	12.38%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	4.76%
Fungi	Host-Associated → Fungi	0.95%
Plants	Host-Associated → Plants	11.43%
Terrestrial	Environmental → Terrestrial	82.86%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.95%
Mycelium	Host-Associated → Fungi → Mycelium	0.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.62%
Roots	Host-Associated → Plants → Roots	0.95%
Sediment	Environmental → Aquatic → Sediment	3.81%
Soil	Environmental → Terrestrial → Soil	82.86%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.95%
Loam	Environmental → Terrestrial → Soil → Loam	7.62%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.86%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.57%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.95%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.95%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.95%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.52%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.95%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.95%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.95%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.90%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.81%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.95%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.67%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.81%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M

Showing 1 to 10 of 94 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_1000276410	3300000567	Peatlands Soil	MTSYGDHGFAARLLTSAEPGAAGGRVILAEAARDALRAAGL*
Ga0063454_1012186581	3300004081	Soil	ACINVGVRARYLAGHMGDDGFAAALATPAGSRAPGLAGERLVLAEAARDALREGTI*
Ga0066683_107429002	3300005172	Soil	LAGHMADDGFAAQLLTSAENPEPGSAGARIVLAEAARDALRDGSL*
Ga0070668_1017713322	3300005347	Switchgrass Rhizosphere	DDGFAVRLATSAGSREPGTAGGRLVLAEAARDALREGSL*
Ga0070694_1015482782	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	ACIGVGVRARYLAGYMADDGFAARLLTSAENPEPGSAGARIVLAEAARDALRAGRL*
Ga0073909_102819872	3300005526	Surface Soil	RARYLAGHMGEDGFAARLATSAESGDLGAAGGRVVLAEAARDALREGSL*
Ga0070763_101295171	3300005610	Soil	RYLAGHMADDGFAAGLLTSAEPGAAGGRVVLAEAARDALRAAGL*
Ga0066903_1073176491	3300005764	Tropical Forest Soil	VRARYLAGHMADDGFAARLLTPAEPGEAGGRVVLAEAARDALREGGL*
Ga0066696_101387853	3300006032	Soil	MGDDGFAARFGTSAGSGEPGSAGSRVVLAEAARDALRGVGL*
Ga0066696_105751071	3300006032	Soil	LAGHMGDDGFAARLATPGESREPGTAGGRVVLAEAARDALREGSL*
Ga0075029_1008791581	3300006052	Watersheds	GHMADDGFAARLLTSAEPGAAGSRVILAEAARDALRAAGL*
Ga0075030_1005535141	3300006162	Watersheds	RARYLAGHMADDGYAATLLTAAEAGEAGGRVVLAEAARDALLEGGL*
Ga0075018_103745862	3300006172	Watersheds	RYLAGHMADDGFAARLLTSAEPGAAGDRVILAEAARDALRAAGL*
Ga0068871_1015211512	3300006358	Miscanthus Rhizosphere	VGVRARYLAGHMGDDGFAARLATSAGSREPGTAGGRVVLAEAARDALREGGL*
Ga0066660_108012892	3300006800	Soil	MADDGFAARLLTSAENPDPGAAGGRVILAEAARDALREGSL*
Ga0075424_1023441441	3300006904	Populus Rhizosphere	CIGVGVRARYLAGHMGDDGFAARLATSAGSREPGTAGGRLVLAEAARDALREGSL*
Ga0105247_102623731	3300009101	Switchgrass Rhizosphere	ARLATSAGSREPGTAGGRLVLAEAARDALREGSL*
Ga0116222_10071115	3300009521	Peatlands Soil	MTSHGDHGFAARLLTSAEPGAAGGRVILAEAARDALRAAGL*
Ga0126374_105606442	3300009792	Tropical Forest Soil	GHMADDGYARLLVSTEPGAAGEQTVLAEAARDALRGGGATER*
Ga0134065_102398431	3300010326	Grasslands Soil	DGFTARLLTSAESGEPGAAGARVVLAEAARDALRAGSL*
Ga0134080_102129812	3300010333	Grasslands Soil	VGVRARYLAGHMADDGFAARLLTSAESREPGAAGERVVLAEAARDALRAGSL*
Ga0126376_109515291	3300010359	Tropical Forest Soil	ADDGFAARLLTSAENPDPGSAASRVILAEAARDALREGGL*
Ga0126372_120527602	3300010360	Tropical Forest Soil	GVGVRARYLAGHMADDGFAARLLTSAESGEPGAAWARIVLAEAARDALREGSL*
Ga0126378_101876992	3300010361	Tropical Forest Soil	VGVRARYLAGHMADDGFAARLLTPAEPGEAGGRVVLAEAARDALREGGL*
Ga0105239_102680931	3300010375	Corn Rhizosphere	RARYLAGHMGDDGFAARLATSAGSREPGTAGGRLVLAEAARDALREGSL*
Ga0126381_1000917691	3300010376	Tropical Forest Soil	RYLAGHMADDGYAATLLPGAVVNRTVLAEAARDALRDGGV*
Ga0126381_1048986791	3300010376	Tropical Forest Soil	MADDGYARLLASAEPGAARDLNVLAEAARDALRDGGV*
Ga0126383_122891991	3300010398	Tropical Forest Soil	GDDGFAARLGTPADSGEAGSFGSRFVLAEAARDALREGSL*
Ga0137392_112945402	3300011269	Vadose Zone Soil	VRARYLAGHMADDGFAARLLTSAENPEPGSAGARIVLAEAARDALRAAGR*
Ga0153924_11399401	3300012089	Attine Ant Fungus Gardens	VRARYLAGHMADDGYAATLLSSAQAGEAGGRVVLAEAARDALCEGGL*
Ga0137382_100556602	3300012200	Vadose Zone Soil	MADDGFAARLLTSADSREPGAAGGRVVLAEAARDALREDSL*
Ga0137382_102915962	3300012200	Vadose Zone Soil	MADDGFARLLTSAEPGAAGGRVILAEAARDALRAAGL*
Ga0137377_104843482	3300012211	Vadose Zone Soil	YLAGHMADDGFAAQLLASAENPEPGSAGARIVLAEAARDTLREGSL*
Ga0137384_111364162	3300012357	Vadose Zone Soil	RARYLAGHMGDDGFAATFQPSAENPDPGSPGSRAVLAEAARDALRAGSL*
Ga0137375_101763503	3300012360	Vadose Zone Soil	MADDGFAARVLTSSREPGAAGGRVVLAEAARDALREGSL*
Ga0150984_1144012011	3300012469	Avena Fatua Rhizosphere	YLAGHMGDDGFAAALATPAGSRAPGLAGERLVLAEAARDALREGTI*
Ga0157329_10156941	3300012491	Arabidopsis Rhizosphere	DGFAVRLATSAGSREPGTAGGRLVLAEAARDALREGSL*
Ga0157350_10566741	3300012499	Unplanted Soil	MGDDGFAVRLATSAGSREPGTAGGRLVLAEAARDALREGSL*
Ga0137410_105343211	3300012944	Vadose Zone Soil	RYLAGHMADDGFAARLLTSAENPEPGSAGARIVLAEAARDALREGSL*
Ga0164302_107240631	3300012961	Soil	MGEDGFAARLATSAESGDLGAAGGRVVLAEAARDALREGSL*
Ga0126369_109919492	3300012971	Tropical Forest Soil	ARYLAGHMADDGYARLLASAEPGAARDLNVLAEAARDALRDGGV*
Ga0126369_113988483	3300012971	Tropical Forest Soil	MADDGFAARLLTSAEPGSAASRAILAEAARDALRKGGL*
Ga0164309_108367601	3300012984	Soil	DDGFAARLLTSAENPEPGLAGARIVLAEAARDALRDGSL*
Ga0164304_108134342	3300012986	Soil	AAQLLTSAENPEPGLAGARIVLAEAARDALRDGSL*
Ga0157369_122927611	3300013105	Corn Rhizosphere	GVRARYLAGHMGDDGFAARLATSAGSREPGTAGGRLVLAEAARDALREGSL*
Ga0157378_131328902	3300013297	Miscanthus Rhizosphere	RARYLAGHMADDGFAARLLTSAENPEPGSAGARIVLAEAARDALREGGL*
Ga0132255_1060453522	3300015374	Arabidopsis Rhizosphere	CIGVGVRARYLAGHMADDGFAARLLTSGENPDPGSAGSRAILAEAARDALCDCGL*
Ga0182036_111084752	3300016270	Soil	GHMADDGFAARLLTSAEPGSAASRAILAEAARDALRESGL
Ga0182034_114649912	3300016371	Soil	ADDGFAARLLTSAGPGEAGGRVVLAEAARDSLREGGL
Ga0182040_104357141	3300016387	Soil	HMADDGYAATLLPGAVANRTVLAEAARDALRDGGV
Ga0182039_107889171	3300016422	Soil	RARYLAGHMADDGFAARLLTSAGPGEAGGRVVLAEAARDSLREGGL
Ga0187801_102146031	3300017933	Freshwater Sediment	MADDGFAARLLTSAEPGAAGDRVVLAEAARDALRAAGL
Ga0187779_110424582	3300017959	Tropical Peatland	VRARYLAGHMADDGFAARLLTSAEPGAAGSRVVLAEAARDALRAAGL
Ga0187783_100435321	3300017970	Tropical Peatland	GHMADDGHAATVLTSARPGEAGGRVVLAEAARQALREGSR
Ga0187783_112505562	3300017970	Tropical Peatland	ADDGFAAGLLTSAEPGAGGSRVLLAEAARDALRAGL
Ga0187765_102720152	3300018060	Tropical Peatland	ARYLAGHMADDGFAARLLVAAEPGEAGGRVVLAEAARDALREGGL
Ga0066667_113023991	3300018433	Grasslands Soil	MGDDGLAASFGTSAQSGEPGSAGSRAVLAEAARDALRADSL
Ga0193747_11127871	3300019885	Soil	RYLAGHMGDDGFAARLATPAGSGDPGAAGGRVVLAEAARDALSAGSL
Ga0193693_10337872	3300019996	Soil	RYLAGHMADDGFTASLLTSAESREPGAAGGRVVLAEAARDALREGSL
Ga0210402_118390931	3300021478	Soil	MADDGFTGRLLTSAEPGSAGSRAILAEASRDALRQGVGFLR
Ga0210409_115117952	3300021559	Soil	ARYLAGHMADDGFAATLLTSAEPGAAGSRVILAEAARDALRAAGR
Ga0224564_10045613	3300024271	Soil	AGHMADDGFAARLLTSAEPGAAGGRVILAEAARDALRAAGL
Ga0207700_100795194	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	GVRARYLAGHMGDDGFAASFLTSAGNPEPGSAGSRAVLAEAARDALRDAGL
Ga0207691_101293083	3300025940	Miscanthus Rhizosphere	VRARYLAGHMADDGFTARLLTSAESGEPGAAGGRVVLAEAARDALREGSL
Ga0207683_117670932	3300026121	Miscanthus Rhizosphere	ADDGFAARLLTSAENPEPGSAGARIVLAEAARDALRAGSL
Ga0209473_11130242	3300026330	Soil	AGNMADDGFAARLLTSAENPDPGAAGGRVILAEAARDALRAAGL
Ga0208236_10001313	3300027066	Forest Soil	MADDGFAARLLTSAEPGAAGSRVVLAEAARDALRAAGL
Ga0208199_10052274	3300027497	Peatlands Soil	MTSYGDHGFAARLLTSAEPGAAGGRVILAEAARDALRAAGL
Ga0208324_10141181	3300027604	Peatlands Soil	MTSHGDHGFAARLLTSAEPGAAGGRVILAEAARDALRAAGL
Ga0209074_100409442	3300027787	Agricultural Soil	YLAGHMGDDGFAARLATPAGSGEPGTAGARVALAEAARDALREGSL
Ga0209074_102963002	3300027787	Agricultural Soil	GVRARYLAGHMGDDGFAARLGTPADSGEPGSFGSRFVLAEAARDALRAGSL
Ga0209811_102365871	3300027821	Surface Soil	VRARYLAGHMGEDGFAARLATSAESGDLGAAGGRVVLAEAARDALHEGSL
Ga0209465_104963852	3300027874	Tropical Forest Soil	LAGHMADDGYATLLTSAEPGAAGDPTVLAEAARDALRDGGV
Ga0209698_101242073	3300027911	Watersheds	YLAGHMADDGFAARVLTSAEPGAAGGRVVLAEAARDALRAAGL
Ga0209526_107620741	3300028047	Forest Soil	MADDGFAARLLTSPENPEPGSGFSAGARIVLAEAARDALREGSL
Ga0318516_107641242	3300031543	Soil	VGVRSRYLAGHMADDGYARLMTSAAPGTAWDRTVLAEAARDALRDGGV
Ga0318571_101682251	3300031549	Soil	DDGFAARLLTSAGPGEAGGRVVLAEAARDALREGGV
Ga0318515_102050402	3300031572	Soil	ARYLAGHMGDDGFAARFLTSAEPGSAGSRVVLAEAARDALRGVGL
Ga0318542_102027872	3300031668	Soil	ADDGFAARLLTSAEPGSAASRAILAEAARDALREGGL
Ga0318542_106999921	3300031668	Soil	VGVRSRYLAGHMADDGYARLMTSAEPGTAWDRTVLAEAARDALRDGGV
Ga0318496_100103434	3300031713	Soil	HMADDGFAARLLTSAEPGSAASRAILAEAARDALREGGL
Ga0306918_112139352	3300031744	Soil	VRSRYLAGHMADDGFARLLTSAEPGPAGDRTVLVEAARDALRDGGV
Ga0318492_107659732	3300031748	Soil	AMCPARLMTSAAPGTAWDRTVLAEAARDALRDGGV
Ga0307475_109792482	3300031754	Hardwood Forest Soil	CIGVGVRARYLAGYMADDGFAAGLLTSAEPGAAGSRVVLAEAARDALRAAGL
Ga0318521_107574101	3300031770	Soil	VRARYLAGHMADDGFAARLLTSAGPGEAGGRVVLAEAARDALREGDL
Ga0318557_101197641	3300031795	Soil	YLAGHMADDGYARLMTSAEPGTAWDRTVLAEAARDALRDGGV
Ga0318557_102445261	3300031795	Soil	VRSRYLAGHMADDGYAATLLPGAVANRTVLAEAARDALRDGGV
Ga0318576_105087472	3300031796	Soil	ADDGYARLMTSAEPGTAWDRTVLAEAARDALRDGGV
Ga0318520_109242211	3300031897	Soil	AGHMADDGYARLLASAEPGAAGDRTVLAEAARDALRDGGV
Ga0306921_100386336	3300031912	Soil	RYLAGHMADDGYAATLLPGAVVNRTVLAEAARDALRDGGV
Ga0306921_103227481	3300031912	Soil	ARYLAGHMADDGFTARLLTSAEPGAAGSRVVLAEAARDALRAAGL
Ga0306926_118133672	3300031954	Soil	YLAGHMADDGFAARLLTSAGPGEAGGRVVLAEAARDALREGGV
Ga0318530_100580363	3300031959	Soil	GVGVRARYLAGHMADDGYAATLLPGAVANRTVLAEAARDALRDGGV
Ga0306922_112269402	3300032001	Soil	DGFAARLLISAEPGEPGGRVVLAEAARDALRESGL
Ga0318506_104277271	3300032052	Soil	ARYLAGHMADDGFAARLLTSAEPGSAASRAILAEAARDALREGGL
Ga0318575_103431642	3300032055	Soil	GHMADDGYARLLASAEPGAAGDRTVLAEAARDALRDGGG
Ga0318518_106194842	3300032090	Soil	GFAATLLTSAENPDPGSAGSRAILAEAARDALRQGGP
Ga0318518_107261172	3300032090	Soil	VRARYLAGHMADDGFAARLLTSAGPGEAGGRVVLAEAARDSLREGGL
Ga0307471_1032326501	3300032180	Hardwood Forest Soil	RYLAGHMADDGFTARLLTSAESGEPGAAGGRVVLAEAARDALGAGSL
Ga0335069_111886021	3300032893	Soil	MGDDGYAARFLTSDAPGSAGSRAVLAEAARDALRGGGL
Ga0335075_104688661	3300032896	Soil	AARLAATAGPGEPGSFAGRLVLAEAARDALRDGSL
Ga0335073_108549041	3300033134	Soil	MAEDGYAARLLTPGEPGEASGRVVLAEAARDALLDPSQ
Ga0335077_106350104	3300033158	Soil	MSVADDGFAARFLTSAEPGSAGSRVVLAEAARDALRDSGL
Ga0335077_107035171	3300033158	Soil	DDGFAARFLASAGSGEPGSAGSRVVLAEAARDALRDGGL
Ga0372943_1202793_364_489	3300034268	Soil	MGDDGFAATFQPSAENPGPGTPWSRAVLAEAARDALRAGSL

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