Metagenome / Metatranscriptome Family F095964

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095964
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	54 residues
Representative Sequence	LTADGLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARQPRPRPGSGA
Number of Associated Samples	81
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.05 %
% of genes from short scaffolds (< 2000 bps)	94.29 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.429 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (25.714 % of family members)
Environment Ontology (ENVO)	Unclassified (35.238 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (35.238 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.55% β-sheet: 0.00% Coil/Unstructured: 61.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13411	MerR_1	71.43
PF03073	TspO_MBR	5.71
PF00011	HSP20	1.90
PF00486	Trans_reg_C	0.95
PF02627	CMD	0.95
PF01609	DDE_Tnp_1	0.95
PF13466	STAS_2	0.95
PF04909	Amidohydro_2	0.95
PF16859	TetR_C_11	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG3476	Tryptophan-rich sensory protein TspO/CrtK (mitochondrial benzodiazepine receptor homolog)	Signal transduction mechanisms [T]	5.71
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	1.90
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.95
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.95
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.95
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.95
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.95
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.95
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.95
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.43 %
Unclassified	root	N/A	8.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.43 %
Unclassified	root	N/A	8.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.43 %
Unclassified	root	N/A	8.57 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	85.71 %
Unclassified	root	N/A	8.57 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	82.86 %
Unclassified	root	N/A	8.57 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	78.10 %
Unclassified	root	N/A	8.57 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	25.71 %
Unclassified	root	N/A	8.57 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.95 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.95 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	25.71 %
Unclassified	root	N/A	8.57 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.95 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.57 %
Prauserella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Prauserella	0.95 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.95 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.57 %
Prauserella muralis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Prauserella → Prauserella muralis	0.95 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.95 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005177\|Ga0066690_11027707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	516	Open in IMG/M
3300005187\|Ga0066675_11267978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	544	Open in IMG/M
3300005337\|Ga0070682_101198494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	641	Open in IMG/M
3300005340\|Ga0070689_100115260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2141	Open in IMG/M
3300005341\|Ga0070691_10356390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	814	Open in IMG/M
3300005435\|Ga0070714_100267881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1583	Open in IMG/M
3300005435\|Ga0070714_101693662	Not Available	618	Open in IMG/M
3300005436\|Ga0070713_101337241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	694	Open in IMG/M
3300005437\|Ga0070710_10170252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1357	Open in IMG/M
3300005437\|Ga0070710_11437114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	516	Open in IMG/M
3300005439\|Ga0070711_100732236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	834	Open in IMG/M
3300005439\|Ga0070711_101161598	Not Available	667	Open in IMG/M
3300005450\|Ga0066682_10912010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	523	Open in IMG/M
3300005553\|Ga0066695_10595870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	664	Open in IMG/M
3300005618\|Ga0068864_100457346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1222	Open in IMG/M
3300005834\|Ga0068851_10189807	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300005983\|Ga0081540_1184866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	775	Open in IMG/M
3300006028\|Ga0070717_11746783	Not Available	563	Open in IMG/M
3300006028\|Ga0070717_11977721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	525	Open in IMG/M
3300006052\|Ga0075029_100678596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	694	Open in IMG/M
3300006173\|Ga0070716_100193958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1344	Open in IMG/M
3300006174\|Ga0075014_100149203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1140	Open in IMG/M
3300006237\|Ga0097621_100037269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3894	Open in IMG/M
3300006237\|Ga0097621_102249963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	521	Open in IMG/M
3300006804\|Ga0079221_10854872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	661	Open in IMG/M
3300006806\|Ga0079220_10420554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	881	Open in IMG/M
3300006854\|Ga0075425_101141612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	886	Open in IMG/M
3300006854\|Ga0075425_101638930	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300006954\|Ga0079219_12021453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	549	Open in IMG/M
3300009148\|Ga0105243_10171513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1879	Open in IMG/M
3300009522\|Ga0116218_1061526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1706	Open in IMG/M
3300010326\|Ga0134065_10429645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	536	Open in IMG/M
3300010371\|Ga0134125_11774361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	671	Open in IMG/M
3300010373\|Ga0134128_11433633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	760	Open in IMG/M
3300010373\|Ga0134128_13235614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	500	Open in IMG/M
3300010399\|Ga0134127_10211120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1813	Open in IMG/M
3300010876\|Ga0126361_10299101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	535	Open in IMG/M
3300010880\|Ga0126350_11438725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	591	Open in IMG/M
3300012960\|Ga0164301_10333036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1036	Open in IMG/M
3300014654\|Ga0181525_10206479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Prauserella → Prauserella muralis	1072	Open in IMG/M
3300014968\|Ga0157379_12624236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300014969\|Ga0157376_10044531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3649	Open in IMG/M
3300017924\|Ga0187820_1208606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	612	Open in IMG/M
3300017928\|Ga0187806_1059761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1171	Open in IMG/M
3300017937\|Ga0187809_10196312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	714	Open in IMG/M
3300017955\|Ga0187817_10901214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	566	Open in IMG/M
3300017973\|Ga0187780_10996289	Not Available	611	Open in IMG/M
3300017974\|Ga0187777_10564417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	800	Open in IMG/M
3300018086\|Ga0187769_10263831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1283	Open in IMG/M
3300018086\|Ga0187769_10660695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	790	Open in IMG/M
3300018086\|Ga0187769_10893654	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300020080\|Ga0206350_10221413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	591	Open in IMG/M
3300021171\|Ga0210405_10276562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1328	Open in IMG/M
3300021374\|Ga0213881_10383366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	632	Open in IMG/M
3300021377\|Ga0213874_10140075	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300021388\|Ga0213875_10087986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1449	Open in IMG/M
3300021401\|Ga0210393_10335701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1230	Open in IMG/M
3300021432\|Ga0210384_11434693	Not Available	595	Open in IMG/M
3300021474\|Ga0210390_11643615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300021479\|Ga0210410_10132167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2218	Open in IMG/M
3300025928\|Ga0207700_11473245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	604	Open in IMG/M
3300026078\|Ga0207702_11245052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	738	Open in IMG/M
3300027030\|Ga0208240_1040863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	523	Open in IMG/M
3300027158\|Ga0208725_1044981	Not Available	672	Open in IMG/M
3300027765\|Ga0209073_10245196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	695	Open in IMG/M
3300027775\|Ga0209177_10403501	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300027787\|Ga0209074_10108423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	949	Open in IMG/M
3300027787\|Ga0209074_10369759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	593	Open in IMG/M
3300027812\|Ga0209656_10152825	Not Available	1155	Open in IMG/M
3300027824\|Ga0209040_10278686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	825	Open in IMG/M
3300028381\|Ga0268264_11686457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	644	Open in IMG/M
3300028782\|Ga0307306_10265043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	506	Open in IMG/M
3300028828\|Ga0307312_10593971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	732	Open in IMG/M
3300030509\|Ga0302183_10208141	All Organisms → cellular organisms → Bacteria → Terrabacteria group	763	Open in IMG/M
3300030730\|Ga0307482_1188181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	621	Open in IMG/M
3300031962\|Ga0307479_11051389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	782	Open in IMG/M
3300031996\|Ga0308176_10732956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1028	Open in IMG/M
3300032160\|Ga0311301_12756513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300032770\|Ga0335085_10665564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1162	Open in IMG/M
3300032770\|Ga0335085_11188740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	811	Open in IMG/M
3300032770\|Ga0335085_11368457	All Organisms → cellular organisms → Bacteria → Terrabacteria group	743	Open in IMG/M
3300032770\|Ga0335085_11707338	Not Available	648	Open in IMG/M
3300032782\|Ga0335082_10355881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1331	Open in IMG/M
3300032782\|Ga0335082_10914712	Not Available	740	Open in IMG/M
3300032783\|Ga0335079_11159052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	779	Open in IMG/M
3300032783\|Ga0335079_12204713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	525	Open in IMG/M
3300032805\|Ga0335078_11650076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	706	Open in IMG/M
3300032805\|Ga0335078_12045806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	611	Open in IMG/M
3300032828\|Ga0335080_10058589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4260	Open in IMG/M
3300032892\|Ga0335081_12694874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	507	Open in IMG/M
3300032893\|Ga0335069_11442634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	743	Open in IMG/M
3300032893\|Ga0335069_12224921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	573	Open in IMG/M
3300032895\|Ga0335074_10001595	All Organisms → cellular organisms → Bacteria	30734	Open in IMG/M
3300032895\|Ga0335074_11226387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	629	Open in IMG/M
3300032898\|Ga0335072_10541383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1191	Open in IMG/M
3300032954\|Ga0335083_10450703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1087	Open in IMG/M
3300032954\|Ga0335083_10463828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1067	Open in IMG/M
3300032955\|Ga0335076_10949989	All Organisms → cellular organisms → Bacteria → Terrabacteria group	741	Open in IMG/M
3300033134\|Ga0335073_10848447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	971	Open in IMG/M
3300033134\|Ga0335073_11223853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	751	Open in IMG/M
3300033134\|Ga0335073_11588095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	625	Open in IMG/M
3300033158\|Ga0335077_11411696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	670	Open in IMG/M
3300033158\|Ga0335077_11456826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	657	Open in IMG/M
3300033158\|Ga0335077_11470881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	653	Open in IMG/M
3300033158\|Ga0335077_12136204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	516	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.67%
Host-Associated	Host-Associated	13.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.10%
Plants	Host-Associated → Plants	13.33%
Aquatic	Environmental → Aquatic	8.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.19%
Freshwater	Environmental → Aquatic → Freshwater	6.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.76%
Roots	Host-Associated → Plants → Roots	3.81%
Sediment	Environmental → Aquatic → Sediment	1.90%
Peat	Environmental → Terrestrial → Peat	0.95%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	30.48%
Loam	Environmental → Terrestrial → Soil → Loam	15.24%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.90%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.90%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	30.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.38%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.76%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.90%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.90%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	25.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.76%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.76%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.86%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.90%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	1.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.90%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.95%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.95%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.95%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.95%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027030	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF041 (SPAdes)	Environmental	Open in IMG/M
3300027158	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066690_110277072	3300005177	Soil	LAEICALTADGLNLAGIRRVLALQEETRQLQAELARLREFAGEQPPAGQARQPRPRTGSGGA*
Ga0066675_112679782	3300005187	Soil	LAEICALTADGLNLAGIRRVLQLQEETRQLQAEVARLTELAGGQPARSASQPRRTGSGQ*
Ga0070682_1011984942	3300005337	Corn Rhizosphere	LAEICALTADGLNLAGIRRVLQLQEETRLLQAEVARLRELSSARPAPAVPDRRQRPGRAGGA*
Ga0070689_1001152605	3300005340	Switchgrass Rhizosphere	LAEICALTADGLNLAGIRRVLQLQEETRLLQAEVARLRELASARPAPAVPDRRQRPGPAGGG*
Ga0070691_103563903	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	ICALTADGLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARQPRPRPGSGA*
Ga0070714_1002678811	3300005435	Agricultural Soil	CALTADGLNLAGIRRVLEMQEETRQLQAEVARLRGLAGDRAATGPADRDTAAHPRPGRGAKPGPSPA*
Ga0070714_1016936622	3300005435	Agricultural Soil	ALTADGLNLAGIRRVLQLQEETRQLQAELARLRELADQQPAARQAHKPRPRTGSGA*
Ga0070713_1013372413	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	DGLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARQPRPRPGSGA*
Ga0070710_101702521	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	EICALTADGLNLAGIRRVLEMQEETRQLQAEVARLRAMAGDRAAARPADPDTTARPRSGRGAKPGPRPD*
Ga0070710_114371142	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	GLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARQPRPRPGSGA*
Ga0070711_1007322363	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RLAEICALTADGLNLAGIRRVLQLQEETRLLQAEVARLRELSSARPASAVPDRGQRPGRAGGG*
Ga0070711_1011615981	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	NLAGIRRVLALQEETRQLQAEVARLRELTGEQPAAQQAPQPRPRAGSEA*
Ga0066682_109120102	3300005450	Soil	EKLAEICALTADGLNLAGIRRVLALQEETRQLQAELARLREFAGEQPPARQARQPRPRTGSGGA*
Ga0066695_105958701	3300005553	Soil	ADGLNLAGIRRVLALQEETRQLQAELARLREFAGEQPPARQARQPRPRTGSGGA*
Ga0068864_1004573461	3300005618	Switchgrass Rhizosphere	ALTADGLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARPPRPRPGSGA*
Ga0068851_101898071	3300005834	Corn Rhizosphere	EICALTADGLNLAGIRRVLQLQEETRQLQAELARLRDLAGGQPAARPARPPRPRPGSGA*
Ga0081540_11848663	3300005983	Tabebuia Heterophylla Rhizosphere	ADGLNLAGIRRVLALQEETRQLQAELARLREIAGEPAGPQARKPRRRPAGA*
Ga0070717_117467831	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	GIRRVLQLQEETRQLQAELARLRELADQQPAARQAHKPRPRTGSGA*
Ga0070717_119777212	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	NLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARQPRPRPGSGA*
Ga0075029_1006785961	3300006052	Watersheds	GRLQEICALTADGLNLAGIRRVLQLQEETRQLQAELARLRALARASEEAPAAPAREPRARRAASE*
Ga0070716_1001939585	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	DGLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARQSRPRPGGGA*
Ga0075014_1001492032	3300006174	Watersheds	RRVLQLQEETRQLQAELARLREFADQQPAARQARKPRPRTGSGA*
Ga0097621_10003726911	3300006237	Miscanthus Rhizosphere	LTADGLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARQPRPRPGSGA*
Ga0097621_1022499632	3300006237	Miscanthus Rhizosphere	EICALTADGLNLAGIRRVLQLQEETRQLQAEVARLRELSRARPAPAVPDRRQRPGPAGGG
Ga0079221_108548722	3300006804	Agricultural Soil	TADGLNLAGIRRVLEMQEETRQLQAEVARLRLQAGDGAATRPADRDTTARPRSGRGAKPGPRPD*
Ga0079220_104205541	3300006806	Agricultural Soil	ADGLNLAGIRRVLQLQEETRQLQAEVARLRQLADGRGPGARRSQQPC*
Ga0075425_1011416123	3300006854	Populus Rhizosphere	IEKLAEICALTADGLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARPPRPRPGSGA*
Ga0075425_1016389303	3300006854	Populus Rhizosphere	LAGIRRVLEMQEETRLLQVELARLRLLAGDRVATRPPDRDTAARPRPGRGAEPGPRPD*
Ga0079219_120214532	3300006954	Agricultural Soil	AGIRRVLELQEETRQLQAELARLRARARASEEAAAAPAREPRARRAASE*
Ga0105243_101715131	3300009148	Miscanthus Rhizosphere	LTADGLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARSARQPRPRPGSGA*
Ga0116218_10615264	3300009522	Peatlands Soil	RLQEICALTADGLNLAGIRRVLQLQEETRQLQAELARLRALARASEESPAAPARDPRARRAASE*
Ga0134065_104296452	3300010326	Grasslands Soil	IRRVLQLQEETRQLQAELARLRELAGAQPAARQARPPRPRAGGGA*
Ga0134125_117743613	3300010371	Terrestrial Soil	QEETRQLQAELARLRELAGGQPAARPARQPRPRPGSGA*
Ga0134128_114336333	3300010373	Terrestrial Soil	LNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARQPRPRPGSGA*
Ga0134128_132356142	3300010373	Terrestrial Soil	LNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARPPRPRPGSGA*
Ga0134127_102111201	3300010399	Terrestrial Soil	KLAEICALTADGLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARPPRPRPGSGA*
Ga0126361_102991012	3300010876	Boreal Forest Soil	LQEICALTADGLNLAGIRRVLQLEEETRQLQAELARLRELIGEPTDTRAQMRQPPEPTHRPD*
Ga0126350_114387252	3300010880	Boreal Forest Soil	LNLAGIRQVLQLQEETRQLQAELARLRELADKQPAARRTRQPRPRGGSGA*
Ga0164301_103330363	3300012960	Soil	DGLNLSGIRRVLQLQEETRQLQAELARLRELAGGQPAARPARQPRPRPGSGA*
Ga0181525_102064791	3300014654	Bog	ICALTADGLNLAGIRRVLALLEETRQLQAEVARLRELAGDRPADPAARPREPRGGRPAGH
Ga0157379_126242362	3300014968	Switchgrass Rhizosphere	CALTADGLNLAGIRRVLELQEETRQLQAELARLRELAGGQPAARPARQPRPRPGSGA*
Ga0157376_100445311	3300014969	Miscanthus Rhizosphere	RRVLALQEETRQLQAELARLRELAGGQPAARPARQPRPRPGSGA*
Ga0187820_12086061	3300017924	Freshwater Sediment	EICALTADGLNLAGIRRVLHLQEETRQLQTELARLRELAGEQPAARQARQPRPRTGSGT
Ga0187806_10597611	3300017928	Freshwater Sediment	ICALTADGLNLAGIRRVLQLEQETRQLQAELARLRELADEQPVVRRARQPRPRTGSGA
Ga0187809_101963122	3300017937	Freshwater Sediment	LNLAGIRRVLHLQEETRQLQAELARLRDLACDAAPAPQARERRARRPGPGG
Ga0187817_109012142	3300017955	Freshwater Sediment	LQEETRQLQAELARLRELAGQQPAARQARQPRPRTGSGT
Ga0187780_109962891	3300017973	Tropical Peatland	HQICALTADGLNLAGIRRVLQLQEETRQLQAELVRLRELLGGEPPAQPRKPRPRAGA
Ga0187777_105644173	3300017974	Tropical Peatland	EICALTADGLNLAGIRRVLELQAETRRLQAELARLKDLAGHAAAPAPQAQDRRARRGASQ
Ga0187769_102638311	3300018086	Tropical Peatland	ICALTADGLNLAGIRRVLALQEETRQLQAELARLRELACEQPAARQARESRPHTGSGT
Ga0187769_106606951	3300018086	Tropical Peatland	ICALTADGLNLAGIRRVLALQEETRQLQAELARLRGLLGGSAAPAPQERDRRGGRPAVGG
Ga0187769_108936542	3300018086	Tropical Peatland	AEICALTADGLNLAGIRRVLQLREETRQLQAELARLRDLAGEQPAARRPRQPRPRPGSCA
Ga0206350_102214131	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	AEICALTADGLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARQPRPRPGSGA
Ga0210405_102765621	3300021171	Soil	KLAEICALTADGLNLAGIRRVLALQEETRQLQAELARMRELAGGQPAARPARQPRPRPGGGA
Ga0213881_103833661	3300021374	Exposed Rock	IRRVLALQEETRQLQAELARLRELAGGQPAAQQARQPRRRAGSGV
Ga0213874_101400751	3300021377	Plant Roots	GIRRVLALQEETRRLQAEVARLRGLPGSAGPATARAPEPGAGRGAS
Ga0213875_100879862	3300021388	Plant Roots	AGIRRVLALQAETRRLQAEVARLSALTGATGPVPRARKPRARGGE
Ga0210393_103357013	3300021401	Soil	LALQEETRQLQAELARMRELAGGQPAARPARQPRPRPGGGA
Ga0210384_114346931	3300021432	Soil	ICALTSDGLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARSARQPRPRPGGGR
Ga0210390_116436152	3300021474	Soil	AGIRRVLALQEETRQLQAELARLRVLAGGQPAARPARQPRPRPGSGA
Ga0210410_101321675	3300021479	Soil	DGLNLAGIRRVLELQEETRQLQAELARLRELAGQRPAARPARQPGPRPGSGT
Ga0207700_114732452	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DRLAEICALTADGLNLAGIRRVLQLQEETRLLQAEVARLRELSRARPAPAVPDRRQRPGPAGGG
Ga0207702_112450521	3300026078	Corn Rhizosphere	EICALTADGLNLAGIRRVLEMQEETRQLQAEVARLRAMAGDRTAGRPADPGTTARPRSGRGAKPGPRPD
Ga0208240_10408632	3300027030	Forest Soil	GIRQVLALQEETRQLQAELAQLRQLAGEQPAARRTRQPRPRGGSGA
Ga0208725_10449811	3300027158	Forest Soil	AGIRQVLALQEETRQLQAELAQLRQLAGEQPAARRTRQPRPRGGSGA
Ga0209073_102451963	3300027765	Agricultural Soil	LTLAGIRRVLALQEETRQLQAELARLRELTGGQPPARQARQPRSRPGSGGA
Ga0209177_104035011	3300027775	Agricultural Soil	AGIRRVLELQEETRQLQAELARLRARARASEEAAAAPAREPRARRAASE
Ga0209074_101084233	3300027787	Agricultural Soil	LTADGLNLAGIRRVLALQEETRQLQAELARLRESAGEQPPARQARQPRPRTGSGGA
Ga0209074_103697592	3300027787	Agricultural Soil	RVLALQEETRQLQAELTRLRELAGGQPAARPARQPRPRPGSGA
Ga0209656_101528251	3300027812	Bog Forest Soil	QEICALTADGLNLAGIRRVLQLQEQTRQLQAELARLRELAGEQHSARQARQPRPRTDSGG
Ga0209040_102786863	3300027824	Bog Forest Soil	DGLNLAGIRRVLQLQEQTRQLQAELARLRELAGEQPSARQARQSRPRTDSSG
Ga0268264_116864571	3300028381	Switchgrass Rhizosphere	GLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAARPARQPRPRPGSGA
Ga0307306_102650432	3300028782	Soil	DGLNLAGIRRVLALQAETRQLQAELGRLRELAGGQPAARQPRPRAGGA
Ga0307312_105939711	3300028828	Soil	VLALQAETRQLQAELGRLRELAGGQPAARQPRPRAGGA
Ga0302183_102081413	3300030509	Palsa	ADGLNLAGIRRVLQLQQETRQLQAELARLRDLVGETAARLPRNPERAGPG
Ga0307482_11881811	3300030730	Hardwood Forest Soil	EICALTADGLNLVGIRRVLELQDETRQLQAEVARLRDLIGEAQAPALRPAKPGGPDPEP
Ga0307479_110513891	3300031962	Hardwood Forest Soil	ADGLNLAGIRRVLALQEETRQLQAELARLQGLAGERPAARQARQPRPRTGGWA
Ga0308176_107329561	3300031996	Soil	LTADGLNLAGIRRVLQLQEETRQLQAELARLRELAGAQPAARQVRQPRPRADGGA
Ga0311301_127565131	3300032160	Peatlands Soil	VAGIRRVLQLQEETRQLQAELARLRELAGQQPAARQARKPRPRTGSGA
Ga0335085_106655643	3300032770	Soil	AEICALTADGLNLAGIRRVLALQEETRQLQAELTRLREIAGEPAAPQARKPRPRPAGA
Ga0335085_111887401	3300032770	Soil	AEICALTADGLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAAPRAGKPGPGPASGA
Ga0335085_113684573	3300032770	Soil	RVLALQEETRQLQAELARLGEIAGEPAAPQARKPRTRPAGA
Ga0335085_117073381	3300032770	Soil	LTADGLNLAGIRRVLALQEETRQLQAELTRLRELTGGSGPPSPRHARKPLPGPAGGA
Ga0335082_103558813	3300032782	Soil	EICALTADGLNLAGIRRVLALQEETRQLQAELARLRELAGGQPAAPRAGKPGPGPASGA
Ga0335082_109147121	3300032782	Soil	CALTADGLNLAGIRRVLALQEETRQLQAELTRLRELTGGSGPPSPRHARKPLPGPAGGA
Ga0335079_111590521	3300032783	Soil	CALTADGLNLAGIRRVLALQEETRQLQAELARLREIAGEPAAPQARKPRPRPAGA
Ga0335079_122047131	3300032783	Soil	RDFEKLGEICALTADGLNLAGIRRVLALQEETRQLQAELARLREIVGEPAALQARKPRPRPAGA
Ga0335078_116500762	3300032805	Soil	DGLNLAGIRRVLALQEETRQLQAELTRLRALARASEEAPAAPARESRARRAASE
Ga0335078_120458061	3300032805	Soil	DGLNLGGIRRVLALQEEARQLHGELARLRELAGGQPAARPTRQPRPRPGSGA
Ga0335080_100585891	3300032828	Soil	GIRRVLALQEETRQLQAELTRLRGLTGGSGPPSPRQARKPRPGPADGA
Ga0335081_126948742	3300032892	Soil	NLAGIRRVLALQEETRQLQAELARLQGLAGQQPAARPPRQPRPRTGGQAPT
Ga0335069_114426341	3300032893	Soil	RRVLALQEETRQLQAELARLRDLAGQQPAAPRAGKPGPGPASGA
Ga0335069_122249212	3300032893	Soil	GLNLAGIRRVLALQEETRQLQAELARLRALARASEEAPAAPARESRARRAASE
Ga0335074_1000159529	3300032895	Soil	GLNLAGIRRVLQLQEQARQLQAEVARLRELAGDRPAGPSARPGEPRGRRGAGE
Ga0335074_112263871	3300032895	Soil	GIRRVLELQEETRQLQAELARLRELAGGQPATPRAGKPGPRPASGA
Ga0335072_105413831	3300032898	Soil	DGLNLAGIRRVLQLQEETRQLHAELARLQALASQRADPAPRARAPRARPPGSAAQPRRRP
Ga0335083_104507031	3300032954	Soil	QEETRQLQAELAQLRALARASEEAPSAPAREPRARRATSE
Ga0335083_104638283	3300032954	Soil	DKLGEICALTADGLNLAGIRRVLALQEETRQLQAELARLGEIAGEPAAPQARKPRTRPAG
Ga0335076_109499893	3300032955	Soil	RRVLELQEETRQLQAELARLRELAGQQPAGRPARQPRPRAGGGQ
Ga0335073_108484473	3300033134	Soil	GIRRVLELQEETRQLQAELARLRQLAGERPAMRRPRPRDGSGA
Ga0335073_112238531	3300033134	Soil	ICALTADGLNLAGIRRVLALQEETRQLQAELARLREIAGEPAAPQARKPRPRPAGA
Ga0335073_115880951	3300033134	Soil	VLELQEETRQLQAELARLRELAGGQPATPRAGKPGPGPASGA
Ga0335077_114116963	3300033158	Soil	LTADGLNLAGIRRVLALQEETRQLQAELARLRELAGQQPAARSARQPRPRAGGGH
Ga0335077_114568261	3300033158	Soil	IEKLAEICALTADGLNLAGIRRVLALQEETRQLQAELARLRDLAGQRPAAGPARQPRPRAGGGQ
Ga0335077_114708812	3300033158	Soil	ALTADGLNLAGIRRVLALQEETRQLQAELTRLRGLTGGSGPPSPRQARKPRPGPADGA
Ga0335077_121362042	3300033158	Soil	EICALTADGLNLAGIRRVLALQAETRQLQAELARLREIAGEPAAPPARKPRPRPAGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095964

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences