Metagenome Family F095946

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095946
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	59 residues
Representative Sequence	MKRFVLAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLTIFTLIGR
Number of Associated Samples	87
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	87.25 %
% of genes near scaffold ends (potentially truncated)	24.76 %
% of genes from short scaffolds (< 2000 bps)	70.48 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.429 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (8.571 % of family members)
Environment Ontology (ENVO)	Unclassified (46.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.619 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 48.89% β-sheet: 0.00% Coil/Unstructured: 51.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01381	HTH_3	12.38
PF12844	HTH_19	7.62
PF07719	TPR_2	4.76
PF02954	HTH_8	1.90
PF01192	RNA_pol_Rpb6	0.95
PF00589	Phage_integrase	0.95
PF11355	DUF3157	0.95
PF04738	Lant_dehydr_N	0.95
PF06210	DUF1003	0.95
PF10592	AIPR	0.95
PF13560	HTH_31	0.95
PF13814	Replic_Relax	0.95
PF00082	Peptidase_S8	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1758	DNA-directed RNA polymerase, subunit K/omega	Transcription [K]	0.95
COG4420	Uncharacterized membrane protein	Function unknown [S]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.43 %
All Organisms	root	All Organisms	48.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.43 %
cellular organisms	root	All Organisms → cellular organisms	48.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.43 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.43 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.43 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	27.62 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.86 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.43 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	27.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.95 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.95 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.95 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.43 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	27.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.95 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.95 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.95 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.43 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	27.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.95 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.95 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.95 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.43 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	27.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %
unclassified Sphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium	0.95 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.95 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.95 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.43 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	27.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %
Sphingobium sp. AP49	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. AP49	0.95 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.95 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.95 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000532\|CNAas_1000363	All Organisms → cellular organisms → Bacteria	4360	Open in IMG/M
3300002076\|JGI24749J21850_1040100	Not Available	685	Open in IMG/M
3300003324\|soilH2_10129608	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1267	Open in IMG/M
3300004114\|Ga0062593_101279292	All Organisms → cellular organisms → Bacteria → Acidobacteria	776	Open in IMG/M
3300004480\|Ga0062592_100013324	All Organisms → cellular organisms → Bacteria → Proteobacteria	3427	Open in IMG/M
3300004643\|Ga0062591_101949703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. AP49	604	Open in IMG/M
3300005093\|Ga0062594_101569958	Not Available	680	Open in IMG/M
3300005294\|Ga0065705_10262894	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1155	Open in IMG/M
3300005328\|Ga0070676_10563727	Not Available	817	Open in IMG/M
3300005331\|Ga0070670_100139596	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2095	Open in IMG/M
3300005331\|Ga0070670_100417537	Not Available	1186	Open in IMG/M
3300005331\|Ga0070670_101007801	All Organisms → cellular organisms → Bacteria → Acidobacteria	757	Open in IMG/M
3300005334\|Ga0068869_100987124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	732	Open in IMG/M
3300005337\|Ga0070682_100628449	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300005340\|Ga0070689_100000160	All Organisms → cellular organisms → Bacteria	39742	Open in IMG/M
3300005345\|Ga0070692_10206916	Not Available	1153	Open in IMG/M
3300005353\|Ga0070669_100830225	Not Available	787	Open in IMG/M
3300005354\|Ga0070675_100057681	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3202	Open in IMG/M
3300005441\|Ga0070700_100016382	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	4222	Open in IMG/M
3300005441\|Ga0070700_100029106	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3290	Open in IMG/M
3300005441\|Ga0070700_100074004	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2182	Open in IMG/M
3300005441\|Ga0070700_100392217	Not Available	1041	Open in IMG/M
3300005444\|Ga0070694_100108116	All Organisms → cellular organisms → Bacteria	1977	Open in IMG/M
3300005543\|Ga0070672_100916467	Not Available	775	Open in IMG/M
3300005617\|Ga0068859_101652299	Not Available	707	Open in IMG/M
3300005617\|Ga0068859_101720702	Not Available	693	Open in IMG/M
3300005618\|Ga0068864_100002027	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	16713	Open in IMG/M
3300005618\|Ga0068864_101295925	All Organisms → cellular organisms → Bacteria → Acidobacteria	729	Open in IMG/M
3300005840\|Ga0068870_10110471	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1569	Open in IMG/M
3300005840\|Ga0068870_10191055	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1235	Open in IMG/M
3300005841\|Ga0068863_102596366	Not Available	516	Open in IMG/M
3300005843\|Ga0068860_100313593	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1538	Open in IMG/M
3300005843\|Ga0068860_102414696	Not Available	546	Open in IMG/M
3300005874\|Ga0075288_1066235	Not Available	576	Open in IMG/M
3300006173\|Ga0070716_100526189	Not Available	877	Open in IMG/M
3300006845\|Ga0075421_101139689	Not Available	874	Open in IMG/M
3300006871\|Ga0075434_101562374	Not Available	669	Open in IMG/M
3300006876\|Ga0079217_11105119	Not Available	592	Open in IMG/M
3300006918\|Ga0079216_11315697	Not Available	591	Open in IMG/M
3300006954\|Ga0079219_10962215	Not Available	701	Open in IMG/M
3300007004\|Ga0079218_12807472	Not Available	583	Open in IMG/M
3300007790\|Ga0105679_10715432	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2058	Open in IMG/M
3300009094\|Ga0111539_10013065	All Organisms → cellular organisms → Bacteria	10388	Open in IMG/M
3300009101\|Ga0105247_10948450	Not Available	668	Open in IMG/M
3300009147\|Ga0114129_11651673	Not Available	783	Open in IMG/M
3300009156\|Ga0111538_11368459	Not Available	893	Open in IMG/M
3300009174\|Ga0105241_12034156	Not Available	566	Open in IMG/M
3300009176\|Ga0105242_11014245	Not Available	839	Open in IMG/M
3300009545\|Ga0105237_12552401	Not Available	521	Open in IMG/M
3300009553\|Ga0105249_12401644	Not Available	600	Open in IMG/M
3300009789\|Ga0126307_10005381	All Organisms → cellular organisms → Bacteria	8956	Open in IMG/M
3300009789\|Ga0126307_11236468	Not Available	605	Open in IMG/M
3300009840\|Ga0126313_11887120	Not Available	501	Open in IMG/M
3300010038\|Ga0126315_10843055	Not Available	606	Open in IMG/M
3300010040\|Ga0126308_10126928	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1591	Open in IMG/M
3300010043\|Ga0126380_11365696	Not Available	620	Open in IMG/M
3300010045\|Ga0126311_10509541	Not Available	942	Open in IMG/M
3300010045\|Ga0126311_11087842	Not Available	657	Open in IMG/M
3300010166\|Ga0126306_10996781	Not Available	682	Open in IMG/M
3300010375\|Ga0105239_12070041	Not Available	661	Open in IMG/M
3300010397\|Ga0134124_10109654	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2413	Open in IMG/M
3300010397\|Ga0134124_10362201	Not Available	1369	Open in IMG/M
3300010399\|Ga0134127_10004895	All Organisms → cellular organisms → Bacteria	9687	Open in IMG/M
3300010400\|Ga0134122_11295117	Not Available	736	Open in IMG/M
3300010401\|Ga0134121_10011931	All Organisms → cellular organisms → Bacteria	6910	Open in IMG/M
3300011119\|Ga0105246_11259636	Not Available	683	Open in IMG/M
3300013297\|Ga0157378_11154027	Not Available	813	Open in IMG/M
3300013307\|Ga0157372_10040083	All Organisms → cellular organisms → Bacteria	5172	Open in IMG/M
3300014745\|Ga0157377_10049644	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2359	Open in IMG/M
3300014745\|Ga0157377_11261113	Not Available	575	Open in IMG/M
3300014968\|Ga0157379_10248603	Not Available	1614	Open in IMG/M
3300018466\|Ga0190268_10017442	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2239	Open in IMG/M
3300019360\|Ga0187894_10005286	All Organisms → cellular organisms → Bacteria → Acidobacteria	13297	Open in IMG/M
3300019458\|Ga0187892_10214105	Not Available	1018	Open in IMG/M
3300025900\|Ga0207710_10005241	All Organisms → cellular organisms → Bacteria	5600	Open in IMG/M
3300025904\|Ga0207647_10015671	All Organisms → cellular organisms → Bacteria	5190	Open in IMG/M
3300025907\|Ga0207645_10185694	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1365	Open in IMG/M
3300025908\|Ga0207643_10239221	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1115	Open in IMG/M
3300025923\|Ga0207681_10996673	Not Available	703	Open in IMG/M
3300025925\|Ga0207650_10943730	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	733	Open in IMG/M
3300025926\|Ga0207659_10110548	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2089	Open in IMG/M
3300025933\|Ga0207706_10071421	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3053	Open in IMG/M
3300025934\|Ga0207686_10903737	Not Available	713	Open in IMG/M
3300025935\|Ga0207709_10003204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	9837	Open in IMG/M
3300025935\|Ga0207709_11864990	Not Available	500	Open in IMG/M
3300025936\|Ga0207670_10035033	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3252	Open in IMG/M
3300025936\|Ga0207670_11029256	Not Available	694	Open in IMG/M
3300025941\|Ga0207711_10252701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1619	Open in IMG/M
3300025941\|Ga0207711_10365269	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1338	Open in IMG/M
3300025941\|Ga0207711_11251030	Not Available	684	Open in IMG/M
3300025961\|Ga0207712_11135330	Not Available	696	Open in IMG/M
3300026075\|Ga0207708_10044727	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3374	Open in IMG/M
3300026075\|Ga0207708_10104179	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2198	Open in IMG/M
3300026078\|Ga0207702_11916712	Not Available	584	Open in IMG/M
3300026095\|Ga0207676_10820684	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	908	Open in IMG/M
3300027691\|Ga0209485_1347537	Not Available	502	Open in IMG/M
3300027907\|Ga0207428_10069578	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2767	Open in IMG/M
3300027909\|Ga0209382_12220676	Not Available	518	Open in IMG/M
3300031740\|Ga0307468_100197177	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1357	Open in IMG/M
3300031908\|Ga0310900_10827287	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	751	Open in IMG/M
3300032004\|Ga0307414_10876305	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	822	Open in IMG/M
3300033412\|Ga0310810_10691154	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	951	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	54.29%
Environmental	Environmental	45.71%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	54.29%
Terrestrial	Environmental → Terrestrial	45.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	39.05%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.24%
Cave	Environmental → Terrestrial → Cave	1.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	27.62%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.29%
Loam	Environmental → Terrestrial → Soil → Loam	12.38%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.43%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.95%
Sand	Environmental → Terrestrial → Soil → Sand	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	27.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.43%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.52%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.95%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.95%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.57%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	7.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	6.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.71%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.95%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.95%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.95%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.95%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.95%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000532	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled	Host-Associated	Open in IMG/M
3300002076	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3	Host-Associated	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005874	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
CNAas_10003633	3300000532	Quercus Rhizosphere	MKRFVMAIALTVLMSVTVLAGDIPINGAPATPPPPATTAQSATVSTTLSNLVFTILRLIGR*
JGI24749J21850_10401001	3300002076	Corn, Switchgrass And Miscanthus Rhizosphere	KEIQKMKRFVLAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTVLTNVVLTIFTLIGR*
soilH2_101296081	3300003324	Sugarcane Root And Bulk Soil	MKRVVLAVALTGLMSVTVLAGDIPINGAPAPAPPAPTTTAQSATVSMALTNVVLMVFTLIGR*
Ga0062593_1012792921	3300004114	Soil	QKMKRFVLAIALSGLLSVTVVAGEVPINGAPAPPQPTTTAQSSSVSTLLTNVVFTIFTLIGR*
Ga0062592_10001332410	3300004480	Soil	SVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTVLTNVVLTIFTLIGR*
Ga0062591_1019497031	3300004643	Soil	IQLRLHPQSQRRLKMKRFVLAVALTGLLSVTVMAGDIPINGAPAPAPPAPTTSSTLLTNVVLTIITTLIGR*
Ga0062594_1015699581	3300005093	Soil	KLACILNRKGDSNMKRFVLAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTVLTNVVLTIFTLIGR*
Ga0065705_102628941	3300005294	Switchgrass Rhizosphere	MKRFVLAVALTGLMSVTVLAGDIPINGAPAPAPPAPTTSSTLLTNAVLTIITTLIGR*
Ga0070676_105637272	3300005328	Miscanthus Rhizosphere	MKRFVLAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSSSVSTLLTNEVFTIFTLIGR*
Ga0070670_1001395961	3300005331	Switchgrass Rhizosphere	MKRFVLAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTVLTNVVLTIFTLKVAKSGLLSRE
Ga0070670_1004175371	3300005331	Switchgrass Rhizosphere	MKRFVMAIALTGLMSVTVLAGDIPINGAPATPPPPATTAQSATVSTTLSNLVFTILTLIGR*
Ga0070670_1010078011	3300005331	Switchgrass Rhizosphere	QSQKETQKMKRFVLAIALSGLLSVTVVAGEVPINGAPAPPQPTTTAQSSSVSTLLTNVVFTIFTLIGR*
Ga0068869_1009871241	3300005334	Miscanthus Rhizosphere	MKRFVLAIALTGLMSMTVLAGEVPINGAPAPAPPAPTTTSSATLANVVLMIITLIGR*
Ga0070682_1006284492	3300005337	Corn Rhizosphere	MKRFVFAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTVLTNVVLTIFTLIGR*
Ga0070689_10000016023	3300005340	Switchgrass Rhizosphere	MKRFVLAVALTGLMSVTVLAGDIPINGAPATPPPPTAQSATTSTALANVVLVIFTLIGR*
Ga0070692_102069161	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFVLAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLTIFTLIGR*
Ga0070669_1008302251	3300005353	Switchgrass Rhizosphere	MKRFVLAIALSGLLSVTVVAGEVPINGAPAPPQPTTTAQSSSVSTLLTNVVLTIFTLIGR
Ga0070675_1000576812	3300005354	Miscanthus Rhizosphere	MKRFVLAVALTGLLSVTVMAGDIPINGAPAPAPPAPTTSSMLLTNVVLTIITTLIGR*
Ga0070700_1000163824	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFVLAIALTGLLSVPVLAGEVPTNGAPVAPPPATSQSATASATLANVVLMIITLISH*
Ga0070700_1000291061	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFVLAIALLGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLTIFTLIGR*
Ga0070700_1000740042	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFVLAIALTGLMSMTVLAGEVPINGAPAPPAPTTTSSATLANVVLMIITLIGR*
Ga0070700_1003922171	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFVLAVALTGLLSVTVMAGDIPINGAPAPAPPAPTTSSTLLTNVVLTIITTLIGR*
Ga0070694_1001081162	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFVLAIALTGLMSMTVLAGEVPINGAPAPAPPAPTTTSSATLANMVLMIITLIGR*
Ga0070672_1009164672	3300005543	Miscanthus Rhizosphere	MKRFVMAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTVLTNVVLTIFTLIGR*
Ga0068859_1016522991	3300005617	Switchgrass Rhizosphere	MKRFVMAIALSGLLSVTVMAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLTIFTLIGR*
Ga0068859_1017207022	3300005617	Switchgrass Rhizosphere	MKRFVLAIALTGIMSMTVLAGEVPINGAPAPPAPTTTSSATLANVVLMIITLIGR*
Ga0068864_1000020273	3300005618	Switchgrass Rhizosphere	MKRFVLAIALTGLMYMTVLAGEVPINGAPAPAPPAPTTTSSATLANVVLMIITLIGR*
Ga0068864_1012959254	3300005618	Switchgrass Rhizosphere	RFVLAIALSGLLSVTVVAGEVPINGAPAPPQPTTTAQSSSVSTLLTNVVFTIFTLIGR*
Ga0068870_101104712	3300005840	Miscanthus Rhizosphere	MKRFVLAVALTGLISVPVLAGNIPTNGVVETPPPPTTTAQSATMTTALANVVLTIITLIGS*
Ga0068870_101910551	3300005840	Miscanthus Rhizosphere	MKRFVLAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTVLTNVVLTIFTLIGR*
Ga0068863_1025963661	3300005841	Switchgrass Rhizosphere	MKRFGLAIALTGLLSVTVLAGEVPTNGAPVTQPPTPQSATASTVLANVALMIITLIGR*
Ga0068860_1003135932	3300005843	Switchgrass Rhizosphere	MKRFVLAIALSGLLSVTVVAGEVPINGAPAPAPPQPTTTAQSATVSTALPNVVLTIFMLIGR*
Ga0068860_1024146961	3300005843	Switchgrass Rhizosphere	KETQNMKRFVLAIALTGLLSVPVLAGEVPTNGAPVAPPPATSQSATASATLANVVLMIITLISH*
Ga0075288_10662351	3300005874	Rice Paddy Soil	MKRFVLAIALTGLMSVTVLAGDIPINGAPATPPPPATTAQSATVSTTLSNLVFTI
Ga0070716_1005261891	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFVLAIALSGLLSVTVLAGEVPINGAPAPAPAPPQPTTTAQSASVSTVLTNVVLTIFTLIGR*
Ga0075421_1011396891	3300006845	Populus Rhizosphere	MKRFVLAMALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLTIFTLIGR*
Ga0075434_1015623742	3300006871	Populus Rhizosphere	MKRFVLAVALTGLLSVTIMAGDIPINGAPAPTPPAPTTSSTLLTNVVLTIITTLIGR
Ga0079217_111051192	3300006876	Agricultural Soil	TVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLTIFTLIGR*
Ga0079216_113156971	3300006918	Agricultural Soil	MKRFVLAVALTGLLSVTVLAGEVPTNGAPAPAPPPATAQSATVSTTLYNVVLTIFTLIGR
Ga0079219_109622151	3300006954	Agricultural Soil	MKRFVLAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTVLTNVVLT
Ga0079218_128074722	3300007004	Agricultural Soil	MKRFVMAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLTIFTLIGR*
Ga0105679_107154322	3300007790	Soil	MKRFVLAVALTGLMSVTVLAGEVPINGAPATPPPPTTTAQSATMNTALANVLLTIITLIGR*
Ga0111539_100130653	3300009094	Populus Rhizosphere	MKRFVLAVALTGLMSMTVLAGDIPINGAPAPAPPAPTTTSNATLANVVLMMITLIGR*
Ga0105247_109484501	3300009101	Switchgrass Rhizosphere	MKRFVLAIALTGLLSVTVMAGDIPINGAPAPAPPAPTTSSTLLTNVVLTIITTLIGR*
Ga0114129_116516732	3300009147	Populus Rhizosphere	MKRFILAFALTGLLSVTVLAGDIPINGAPAPAPPAPTTSSTLLTNVVLTVITTLIGR*
Ga0111538_113684592	3300009156	Populus Rhizosphere	MKRFVLAMALSGLLSVTVLAGEVPINGAPAPAPAPPQPTTTAQSASVSTVLTNVVLTIFTLIGR*
Ga0105241_120341561	3300009174	Corn Rhizosphere	LKMKRFVLAIALTGLMSMTVLAGEVPINGAPAPAPPAPTTTSSATLANVVLVIITLIGR*
Ga0105242_110142451	3300009176	Miscanthus Rhizosphere	MKRFVLAIALTGLMSMTVLAGEVPINGAPAPAPPAPTTTSSATLANVVLMIITLISH*
Ga0105237_125524011	3300009545	Corn Rhizosphere	MKRFVLAIALSGLLAVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLTIFTLIGR*
Ga0105249_124016441	3300009553	Switchgrass Rhizosphere	MKRFVLAIALTGLMSVTVLAGDIPINGAPAPAPPAPTTTSSATLANVVLMIITLIGR*
Ga0126307_100053817	3300009789	Serpentine Soil	MKSFVLAVALTGLMSVTVLAGDIPINGVVAPQPAPTSSTSTSTSALLTNVVLTIITLIGR
Ga0126307_112364682	3300009789	Serpentine Soil	MKRFVMAIALTGLISVTVLAGDIPINGAPATPPPPATTAQSATVSTTLSNLVFTILTLIGR*
Ga0126313_118871201	3300009840	Serpentine Soil	VASSIAKETQNMKRFVLAVALTGLMSVTVLAGDIPINGVVAPQPAPTSSTSTSTSALLTNVVLTIITLISR*
Ga0126315_108430552	3300010038	Serpentine Soil	ALTGLMSVTVLAGEVPINGAAAPTPPPTTTSSTLLTNVVLTIINLIGR*
Ga0126308_101269281	3300010040	Serpentine Soil	MKRFVMAIALTGLMSVTVLAGDIPINGAPATPPPPATTAQSAIVSTTLSNLVFTILTLIGR*
Ga0126380_113656961	3300010043	Tropical Forest Soil	MKRFVLAVALTGLLSVTVLAGDIPINGAPAPAPPAPTTTSSATLANVVLMIITLIGR*
Ga0126311_105095411	3300010045	Serpentine Soil	MKRFVLAIAISGLLSVTVLAGEVPINGAPAPAPPQPTRTAQSASVSTLLTNVVLTIFTLIGR*
Ga0126311_110878421	3300010045	Serpentine Soil	MKRFVLAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVALTIFTLISR*
Ga0126384_101763941	3300010046	Tropical Forest Soil	MKRFVLVIALTGLMSVTTLAGEIPINGAPAPAPPAPTTTSSTVLVTVILTVLGLR*
Ga0126306_109967812	3300010166	Serpentine Soil	MKRFVLAIALTGLMFMTVLAGEVPINGAPAPAPPAPTTTSSATLANVVLMIITLIGR*
Ga0126377_109129882	3300010362	Tropical Forest Soil	MKRFVLAIALTGLMSMTVLAGDIPTNGAPAPAPPAPTTTSSTLLVTVILTVLGLR*
Ga0105239_120700411	3300010375	Corn Rhizosphere	MKRFVLAIALTGLMSMTVLAGEVPINGAPAPPAPTTTSSATLANVVLMIITL
Ga0134124_101096542	3300010397	Terrestrial Soil	MKRFVLAIALTGLMSMTVLAGEVPINGAPVPAPPAPTTTSSATLANVVLMIITLIGR*
Ga0134124_103622011	3300010397	Terrestrial Soil	MKRFVLAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLTIVTLIGR*
Ga0134127_100048959	3300010399	Terrestrial Soil	MKRFVLAIALTGLLSVPVLAGEVPTNGAPAVPPPPATAQSATVSTALANVVFTLFTLIGR
Ga0134122_112951172	3300010400	Terrestrial Soil	MKRFVLAIALTGLLSVPVLAGEVPTNGAPAIPPPPATAQSATVSTALANVVFTLFTLIGR
Ga0134121_100119311	3300010401	Terrestrial Soil	MKRFVLAIVLSGLLSMTVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLTIFTLIGR*
Ga0105246_112596362	3300011119	Miscanthus Rhizosphere	FVLAVALTGLLSVTVMAGDIPINGAPATPPPPATTAQSATVSTTLSNLVFTILTLIGR*
Ga0157378_111540273	3300013297	Miscanthus Rhizosphere	MKRFVLAVALTGLLSVTVMAGDIPINGAPAPAPPAPTTSSPFLTNVVLTIITTLIGR*
Ga0157372_100400831	3300013307	Corn Rhizosphere	MKRFVMAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLMIFTLLGR*
Ga0157375_105098991	3300013308	Miscanthus Rhizosphere	MKRFVLVIALTGLMSVTALAGEIPTNGAAAPTPPPTTSSTVLVTVILTVLGLR*
Ga0157377_100496442	3300014745	Miscanthus Rhizosphere	MKRFVLAVALTGLMSVTVLAGEIPTNGAAAPTPPPTTTSSTLLTNVVLTIINLIGR*
Ga0157377_112611132	3300014745	Miscanthus Rhizosphere	MKRFVLAIALSGLLSVTVVAGEVPINGAPAPPQPTTTAQSASVSTLLTNVVLTIFT
Ga0157379_102486033	3300014968	Switchgrass Rhizosphere	MKRFVMAIALSALLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTVLTNVVLTIFTLIGR*
Ga0190268_100174422	3300018466	Soil	MKRFVMAIALTGLMSVTVLAGDIPINGAPATPPPPATTAQSATVSTTLSNLVFTILTLIG
Ga0187894_100052868	3300019360	Microbial Mat On Rocks	MRRFVLAIALTGLMSVPVLAGNVPTNGVVGEVPTNGATAPPPTTSSTLLTNVVLTIITTLIGR
Ga0187892_102141052	3300019458	Bio-Ooze	MRRFVMAIALTGLMSVPVLAGNIPTNGAVGEVPTNGATAPPPTTSSTLLTNVVLTIITTLIGR
Ga0207710_100052413	3300025900	Switchgrass Rhizosphere	MKRFVLAIALSGLLSVTVLAGEVPINGAPAPAPAPPQPTTTAQSASVSTVLTNVVLTIFTLIGR
Ga0207647_100156715	3300025904	Corn Rhizosphere	MKRFVLAIALSGLLSVRVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNLVLTIFTLIGR
Ga0207645_101856942	3300025907	Miscanthus Rhizosphere	MKRFVLAIALSGLLSVTVVAGEVPINGAPAPPQPTTTAQSSSVSTLLTNEVFTIFTLIGR
Ga0207643_102392212	3300025908	Miscanthus Rhizosphere	MKRFVLAVALTGLISVPVLAGNIPTNGVVETPPPPTTTAQSATMTTALANVVLTIITLIG
Ga0207681_109966731	3300025923	Switchgrass Rhizosphere	MKRFVLAIALSGLLSVTVVAGEVPINGAPAPPQPTTTAQSSSVSTLLTNVVFTIFTLIGR
Ga0207650_109437301	3300025925	Switchgrass Rhizosphere	MKRFVLAVALTGLISVPVLAGNIPTNGVVETPPPPTTTAQSATSSTLLTNVVLTII
Ga0207659_101105482	3300025926	Miscanthus Rhizosphere	MKRFVLAVALTGLLSVTVMAGDIPINGAPAPAPPAPTTSSMLLTNVVLTIITTLIGR
Ga0207706_100714213	3300025933	Corn Rhizosphere	MKRFVLAIALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLTIFTLIGR
Ga0207686_109037371	3300025934	Miscanthus Rhizosphere	MKRFVLAIALTGLMSMTVLAGEVPINGAPAPAPPAPTTTSSATLANVVLMIITLISH
Ga0207709_100032048	3300025935	Miscanthus Rhizosphere	MKRFVLAIALTGLMSMTVLAGEVPINGAPAPAPPAPTTTSSATLANVVLMIITLIGR
Ga0207709_118649901	3300025935	Miscanthus Rhizosphere	MKRFVLAIALTGLLSVPVLAGEVPTNGAPVAPPPATSQSATASATLANVVL
Ga0207670_100350332	3300025936	Switchgrass Rhizosphere	MKRFVLAVALTGLMSVTVLAGDIPINGAPATPPPPTAQSATTSTALANVVLVIFTLIGR
Ga0207670_110292561	3300025936	Switchgrass Rhizosphere	MKRFVLAVALTGLLSVTVMAGDIPINGAPAPAPPAPTTSSTLLTNVVLTIITTLIGR
Ga0207711_102527013	3300025941	Switchgrass Rhizosphere	MKRFVLAVALTGLISVTVLAGDIPTNGSPAPATPPPTAQSATTSTALANVVLVIFTLIGR
Ga0207711_103652692	3300025941	Switchgrass Rhizosphere	MKRFVLAIALTGLMSMTVLAGEVPINGAPAPAPPAPTTTSSATLANMVLMIITLIGR
Ga0207711_112510301	3300025941	Switchgrass Rhizosphere	MKRFVLAIALTGLMSMAVLAGEVPINGAPAPAPPAPTTTSSATLANVVLMIITLIGR
Ga0207712_111353301	3300025961	Switchgrass Rhizosphere	MKRFVLAIALTGLLSVPVLAGEVPTNGAPVAPPPATSQSATASATLANVVLMIITLISH
Ga0207708_100447274	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFVLAIALLGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLTIFTLIGR
Ga0207708_101041793	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFVLAIALTGLMSMTVLAGEVPINGAPAPPAPTTTSSATLANVVLMIITLIGR
Ga0207702_119167121	3300026078	Corn Rhizosphere	MKRFVLAVALTGLLSVTVMAGDIPINGAPAPTPPAPTTSSTLLTNVVLTIITTLIGR
Ga0207676_108206842	3300026095	Switchgrass Rhizosphere	MKRFVLAVALTGLLSVTVMAGDIPINGAPAPAPPAPTTSSTLLTNVVLT
Ga0209485_13475371	3300027691	Agricultural Soil	MKRFILAIAITGLLSVTVLAGEVPTNGAPAPAPPPATAQSATVSTTLYNVVLTIFTL
Ga0207428_100695783	3300027907	Populus Rhizosphere	MKRFVLAVALTGLMSMTVLAGDIPINGAPAPAPPAPTTTSNATLANVVLMMITLIGR
Ga0209382_122206761	3300027909	Populus Rhizosphere	MKRFVLAMALSGLLSVTVLAGEVPINGAPAPAPPQPTTTAQSASVSTLLTNVVLTIFTLIGR
Ga0307468_1001971772	3300031740	Hardwood Forest Soil	MKRFVMAIALTALMSVTVLAGDIPINGAPATPPPPATTAQSATVSTTLSNLVFTILTLIG
Ga0310900_108272871	3300031908	Soil	MKRFVLAVALTGLLSVTVMAGDIPINGAPAPAPPAPTTSSTLTNVVLTIIT
Ga0307414_108763051	3300032004	Rhizosphere	MKRFVLAVALTGLLSVTVMAGDIPINGAPAPVPAPPAPTTSSTLLTNVVLTIITTLIGR
Ga0310810_106911541	3300033412	Soil	MKRFVLAIALTGLLSVTVMAGDIPINGAPAPAPPAPTTSSTLLTNVVLTIITTLIGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F095946

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences