Metagenome Family F095892

Overview

Basic Information

• Family ID: F095892
• Family Type: Metagenome
• Number of Sequences: 105
• Average Sequence Length: 45 residues
• Representative Sequence: MSKLIVRFLAILGALWLIGMVIVLVAVIGAKGRVPSKTILEANF
• Number of Associated Samples: 93
• Number of Associated Scaffolds: 105

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 100.00 %
• % of genes near scaffold ends (potentially truncated): 98.10 %
• % of genes from short scaffolds (< 2000 bps): 90.48 %
• Associated GOLD sequencing projects: 90
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (66.667 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (13.333 % of family members)
• Environment Ontology (ENVO): Unclassified (40.952 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (37.143 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 47.22%
  β-sheet: 0.00%
  Coil/Unstructured: 52.78%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00920	ILVD_EDD	29.52
PF07681	DoxX	3.81
PF07883	Cupin_2	2.86
PF00924	MS_channel	2.86
PF14014	DUF4230	1.90
PF03144	GTP_EFTU_D2	0.95
PF01039	Carboxyl_trans	0.95
PF13407	Peripla_BP_4	0.95
PF01797	Y1_Tnp	0.95
PF01663	Phosphodiest	0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	59.05
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	3.81
COG4270	Uncharacterized membrane protein	Function unknown [S]	3.81
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	2.86
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	2.86
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.90
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.95
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	0.95
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	0.95
COG1290	Cytochrome b subunit of the bc complex	Energy production and conversion [C]	0.95

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.62 %
Unclassified	root	N/A	32.38 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.62 %
Unclassified	root	N/A	32.38 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.67 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.95 %
Unclassified	root	N/A	32.38 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	22.86 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.81 %
Unclassified	root	N/A	32.38 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7.62 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.95 %
Fungi	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	0.95 %
Unclassified	root	N/A	32.38 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.43 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.43 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	7.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.95 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.90 %
Dikarya	subkingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	0.95 %
Unclassified	root	N/A	32.38 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.43 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.67 %
Ascomycota	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	0.95 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.95 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	1.90 %
Unclassified	root	N/A	32.38 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.95 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.95 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.43 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.95 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	1.90 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.95 %
Nostocaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae	1.90 %
saccharomyceta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta	0.95 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.95 %
Unclassified	root	N/A	32.38 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.43 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.95 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.95 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.95 %
Nostoc	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc	1.90 %
Saccharomycotina	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina	0.95 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.95 %
Unclassified	root	N/A	32.38 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	0.95 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.43 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.95 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.95 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.95 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.95 %
Saccharomycetes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes	0.95 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.95 %
Unclassified	root	N/A	32.38 %
unclassified Nostoc	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → unclassified Nostoc	1.90 %

Level 11

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.43 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.95 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.95 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.95 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.95 %
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → unclassified Nostoc → Nostoc sp. 'Peltigera malacea cyanobiont' DB3992	1.90 %
Saccharomycetales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales	0.95 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.95 %
Unclassified	root	N/A	32.38 %

Level 12

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.43 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.95 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.95 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.95 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.95 %
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → unclassified Nostoc → Nostoc sp. 'Peltigera malacea cyanobiont' DB3992	1.90 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.95 %
Trichomonascaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Trichomonascaceae	0.95 %
Unclassified	root	N/A	32.38 %

Level 13

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.43 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.95 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.95 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.95 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.95 %
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → unclassified Nostoc → Nostoc sp. 'Peltigera malacea cyanobiont' DB3992	1.90 %
Sugiyamaella	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Trichomonascaceae → Sugiyamaella	0.95 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.95 %
Unclassified	root	N/A	32.38 %

Level 14

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.43 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.95 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.95 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.95 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.95 %
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → unclassified Nostoc → Nostoc sp. 'Peltigera malacea cyanobiont' DB3992	1.90 %
Sugiyamaella lignohabitans	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Trichomonascaceae → Sugiyamaella → Sugiyamaella lignohabitans	0.95 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.95 %
Unclassified	root	N/A	32.38 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001180|JGI12695J13573_1010498	All Organisms → cellular organisms → Bacteria	633
3300001661|JGI12053J15887_10472781	Not Available	599
3300003219|JGI26341J46601_10094844	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	876
3300005445|Ga0070708_101439232	All Organisms → cellular organisms → Bacteria	642
3300005445|Ga0070708_102144021	All Organisms → cellular organisms → Bacteria	517
3300005554|Ga0066661_10615142	All Organisms → cellular organisms → Bacteria	643
3300005555|Ga0066692_10522086	All Organisms → cellular organisms → Bacteria	754
3300006050|Ga0075028_100546433	All Organisms → cellular organisms → Bacteria	682
3300006086|Ga0075019_10462182	Not Available	783
3300006086|Ga0075019_10751821	Not Available	619

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	34.29%
Terrestrial	Environmental → Terrestrial	65.71%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	30.48%
Peat	Environmental → Terrestrial → Peat	7.62%
Sediment	Environmental → Aquatic → Sediment	3.81%
Soil	Environmental → Terrestrial → Soil	58.10%

Type

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	8.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.05%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	30.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.48%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	18.10%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.86%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.95%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.95%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.57%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	9.52%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.52%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.81%

Habitat

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.95%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.81%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.95%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.95%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.90%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.76%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.86%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.76%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.95%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	13.33%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	9.52%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	10.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.95%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.33%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.81%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001180	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3	Environmental
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12695J13573_10104981	3300001180	Forest Soil	MFKSIVRFLAILGALVIIGTVFAVVAVIGSKGTVPSKTILEANFEQ
JGI12053J15887_104727812	3300001661	Forest Soil	MSKLIVRFLAILGALWLIGMVIALVAVIGAKGRVP
JGI26341J46601_100948441	3300003219	Bog Forest Soil	VSKIIVRFLAILGALWLIGMVIVLVFVIGSKAKVPSKTILE
Ga0070708_1014392321	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSKVIVRFLAILGALWLVAMVIMIVAVIGSKGTVPEKTILEADFEQALP
Ga0070708_1021440211	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLKVIVRFLAILGALWLVAMVIMIVAVIGSKGTVPEKTILEADFEQALPEDI
Ga0066661_106151421	3300005554	Soil	MSKLIVRFLAILGALWLIGMVIVLVAVIGAKGRVPSKTIL
Ga0066692_105220862	3300005555	Soil	MSKLIVRFLAILGALSLIGMVIVLVAVIGAKGRVPSKTILEANFEQTFLE
Ga0075028_1005464332	3300006050	Watersheds	MSKAIVRFLAILGALWLVGLGIVLFALMGSKGKVPSKTILEANFEQ
Ga0075019_104621822	3300006086	Watersheds	MSKLIVRFLAILGALWLIGMVIMMVAVIGVKGRVPSKTILEANFEQA
Ga0075019_107518211	3300006086	Watersheds	MSKLIVRFLAILGALWLIGMVIVLVFVIGAKGKVPSRTILEAN
Ga0075014_1007336931	3300006174	Watersheds	MSRVIVRFLAILGALWLIGLVIMMVAIIGSKGRVPSKTILEANLEQS
Ga0099830_100288041	3300009088	Vadose Zone Soil	MLKVIVRFLAILGALWLVAMVIMIVAVIGSKGTVPE
Ga0099792_108541092	3300009143	Vadose Zone Soil	MSKLIVRFLAILGALWLIGMVIVLVAVIGAKGRVPSKTILEANFEQTFLE
Ga0116222_15416591	3300009521	Peatlands Soil	MSKAIVRFLAILGAFWLIGMVIVMVAVIGSKGKVTSKTILE
Ga0116221_10469841	3300009523	Peatlands Soil	MSKLIVRFLAILGALWLIGMVIVLVAVIGMKGRVP
Ga0116221_13880511	3300009523	Peatlands Soil	MSKVIVRFLAILGALWLIGMVIVMVAVIGMKGRVPSKTILEANFEQTF
Ga0116110_10312561	3300009643	Peatland	MSKFIVRFLAVLGALWLIGMVIVLVAVIGAKGKVPSKTI
Ga0116110_11260712	3300009643	Peatland	MSKLIVRFLAILGALWLIGMVIVLVAVIGVKGKVPSKTILEA
Ga0116215_10054961	3300009672	Peatlands Soil	MSKAIVRFLAILGALWLIGMVIVMVAVIGMRGKVP
Ga0116224_101307531	3300009683	Peatlands Soil	MSKAIVRFLAILGALWLIGMVIVLVAVIGTKGKVPSKTILEANFEQAFME
Ga0116130_11051061	3300009762	Peatland	MSKVIVRFLAILGALWLIGMVIVLVAVIGVKGKVPSKT
Ga0116134_11855932	3300009764	Peatland	MSKLIVRFLAILGALWLIGMIIVLVAVIGAKGKVPSKTILEADLEQTF
Ga0074045_101631271	3300010341	Bog Forest Soil	MSKAIVRFLAILGALSLIGTAVVMIAVIGVRGKVPSKTILEANF
Ga0074044_102633892	3300010343	Bog Forest Soil	MSKLIVRFLAILGALWLIGMVIVLVAVIGMKGRVPSKTILEANF
Ga0136449_1019785261	3300010379	Peatlands Soil	MSKVIVRFLAILGALWLIGMVIVLVAVIGMKGRVPSKTILEANFEQTF
Ga0136449_1039929931	3300010379	Peatlands Soil	MSKLIVRFLAILGALWLIGMVIVLVAVIGMKGRVPSK
Ga0137389_103400702	3300012096	Vadose Zone Soil	MSKLIVRFLAILGALWLIGMVIVLVAVIGVKGRVPSKTIL
Ga0137363_106548451	3300012202	Vadose Zone Soil	MSKAIVRFLAILGALWLIGMVIVMVAVIGVKGKVPSRTILEANFEQSFMED
Ga0137362_101847032	3300012205	Vadose Zone Soil	MSKLIVRFLAILGALWLIGMVIVLVAVIGAKGRVPSKTILEANF
Ga0137386_111481501	3300012351	Vadose Zone Soil	MSKVIVRFLAILGALWLVAMVIMIVAVIGSKGKVPDKTILEADFEQAL
Ga0137360_109344551	3300012361	Vadose Zone Soil	MSKLIVRFLAILGALWLIGMVIVLVAVIGAKGRVPSKTILEANFEQTF
Ga0137358_100224455	3300012582	Vadose Zone Soil	MSKLIVRFLAVLGALWLIGMVIVLVAVIGAKGRVPSK
Ga0137398_112212042	3300012683	Vadose Zone Soil	MSKVIVRFLAILGALWLIAMVIVIVAVIGSKGTVPDKTILEA
Ga0137416_114839122	3300012927	Vadose Zone Soil	MSKLIVRFFAILGALWLIGMVIVLVAVIGAKGRVPSKTILEANLE
Ga0126369_112727421	3300012971	Tropical Forest Soil	MLKAIVRFLAILGALWLIGLAIMLVAVIGAKGKVPQKTILEADLEQPLL
Ga0181524_100750601	3300014155	Bog	MSKFIVRFLAILGALWLIGMIIVLVFVIGAKGRVPSKTILEAN
Ga0181524_102007982	3300014155	Bog	MSKLVVRFLAILGALWLIGMVIVLVAVIGTKGKVPSKTILEANFE
Ga0181530_105094761	3300014159	Bog	MSKLIVRFLAILGALWLIGMVIVMVAVIGWKGRVPSKTILEANFEQAFME
Ga0181531_107407251	3300014169	Bog	MSKLIVRFLAILGGLWLIRMVIVLVFVIGAKGRVPSK
Ga0137420_14780902	3300015054	Vadose Zone Soil	MSKVIVRFLAILGALWLVAMVIMIVAVIGTKGKVPDKTILEANFENALPRMFRKVRPPS*
Ga0167668_10342033	3300015193	Glacier Forefield Soil	MSKLIVRFLAILGALWLITMVIVLVAVIGAKGKVPSKTILEANFEQTFLE
Ga0137403_103821731	3300015264	Vadose Zone Soil	MSKAIVRFLAILGALWLIGMVIIMATVIGMKGKVPSKTI
Ga0187818_100899543	3300017823	Freshwater Sediment	MSKAIVRFLAILGALWLIGLVIMMVAVIGFKGKVPSKTILEANL
Ga0187818_103024921	3300017823	Freshwater Sediment	MSKLFVRFLAILGALWLIGMVIVMVAVIGSKGRVPSKTILEANFEQAFM
Ga0187849_11068731	3300017929	Peatland	MSKLIVRFLAILGALWLIGMVIVMVAVIGTKGKVPSKTILEANF
Ga0187847_1000227317	3300017948	Peatland	MSKAIVRFLAILGALWLIGMVIVLVTVIGMKGKVPSKTILEANFQEAFPEDIPNT
Ga0187870_11371091	3300017998	Peatland	MSKVIVRFLAILGALWLIGMVIVLVAVIGVKGKVPSKTILEANFEQ
Ga0187804_102174681	3300018006	Freshwater Sediment	MSKAIVRFLAILGALWLIGMVIVLVAVIGSKGKVPSKTILEASF
Ga0187864_100931452	3300018022	Peatland	MSKLIVRFLAILGALWLIGMVIVLVAVIGMKGRVPSKTIL
Ga0187869_102339281	3300018030	Peatland	MSKLIVRFLAILGALGLIGMVIVLVAVIGWKGKVPFKTILEANFE
Ga0187867_104208911	3300018033	Peatland	MSKLIVRFLAILGALGLIGMVIVLVAVIGWKGKVPFKTILEANFEQTFL
Ga0187863_102879811	3300018034	Peatland	MGKAIVRFLAILGALGLIGMAIMLFAVIGAKGKIPSKTILEADFEQS
Ga0187863_106959242	3300018034	Peatland	MSKAIVRFLAILGALSLIGIVIVMVTVIGMRGRVPS
Ga0187875_106957221	3300018035	Peatland	MFKAFVRFLAILGALSLIGTVIVMVAVIGVRGRVPSKTILEANFEEAF
Ga0187862_102084722	3300018040	Peatland	MSKLVVRFLAILGALWLIGMVIVLVAVIGTKGKVPSKT
Ga0187862_105452762	3300018040	Peatland	MSNLIVRFLAILGALWLIGMVIVLVAVIGWKGKVPSKTILEA
Ga0187862_106555382	3300018040	Peatland	MSKLIVRFLAILGALWLIGMVIVLVAVIGVKGRVPSKTILEANFEQTFMEDVPDT
Ga0187890_101216733	3300018044	Peatland	MGRAIVRFLAILGALGLIGMAIMLFAVIGAKGKIPSKTILEADFEQSFPEEIPDT
Ga0187859_100824863	3300018047	Peatland	MSKAIVRFLAILGALGLIGMVIAMVAVIGTKGRVPSKTILEANLEQSFLGTC
Ga0187784_104128342	3300018062	Tropical Peatland	MSKIIVRFLAILGALWLIGMVIVLVAVIAAKGKVPSKTILEAD
Ga0187784_109513661	3300018062	Tropical Peatland	MSKVIVRFLAILGALWLIGMAIVLLAVIGMKGKVPSKT
Ga0187772_101792501	3300018085	Tropical Peatland	MSKLIVRFLAILGALWLIGMIIVLIAVIGAKGKVPSKTILEADLEQPLVE
Ga0187770_113320951	3300018090	Tropical Peatland	MSKLIVRFLAILGALWLIGMVITLAYVIGAKGKIPSKTILEANFEQP
Ga0182031_14244465	3300019787	Bog	MSKAIVRFLAILGALWLIGMVIVLVAVIGVKGKVPSKTILEA
Ga0193725_10690032	3300019883	Soil	MTKAIVRFLAILGALWLVTMVIMIVAVIGSKGKVPDKTILEANFEQA
Ga0210406_109973981	3300021168	Soil	MSKLIVRFLAILGALWLITMVIVLVAVIGAKGKVPSKTILEANF
Ga0210393_115807952	3300021401	Soil	MSKAIVRFLAVLGALSLAGMVIMLVAVIGKNGRVPFKTILEANFEQSFIEDAP
Ga0210384_112066621	3300021432	Soil	VSKLIVRFLAILGALWLITMVIVLVAVTGAKGKVPSKTILEANFEQTFLED
Ga0210390_102027051	3300021474	Soil	MSKAIVRFLAILGALWLIGMVIVLVAVIGKKGRVPSKTILEANFEQTFLED
Ga0208189_10079351	3300025444	Peatland	MSKVIVRFLAILGALWLIGMVIVLVAVIGLKGKVPSK
Ga0208689_10681582	3300025459	Peatland	MSKLIVRFLAILGALWLIGMVIVMVAVIGSKGKVPSKTILEANFEQAFME
Ga0208819_11135061	3300025498	Peatland	MSKLIVRFLAILGALWLIGMVIVMVAVIGVKGKVPSKTILEANFEQTFLED
Ga0208686_10308801	3300025500	Peatland	MSKLIVRFLAILGALGLIGMVIVMVAVIGTKGRVPSKTILEANFEQTFLE
Ga0208937_11437901	3300025506	Peatland	MSKLIVRFLAILGALWLIGMVIVMVAVIGVKGKVPSKTILEANFEQTFLEDAPE
Ga0208188_10733661	3300025507	Peatland	MSKFIVRFLAVLGALWLIGMVIVLVAVIGAKGKVPSKTILEANFER
Ga0207927_11110692	3300025579	Arctic Peat Soil	MSKLIVRFLAILGALVLIGMVIVLVAVIGSKGKVPSKTILEANFEEAF
Ga0209577_102052771	3300026552	Soil	MFKSIVRFLAILGALVLIGMVIAVVAVIGSKGKVPSKTILEANFEQTLMEDVPET
Ga0179587_111218332	3300026557	Vadose Zone Soil	MSKVIVRFLAILGALWLIAMVIVIVAVIGSKGTVRDKTIMEANFEQALPEN
Ga0208984_11295232	3300027546	Forest Soil	MFKSIVRFLAILGALVLLGTVFAVVAIIGAKGKVPS
Ga0209525_11391511	3300027575	Forest Soil	MFRLIVRFLAILGALGLIGLAIVVVAVIGWKGKVPSKTILEANFEQSFLEDA
Ga0209333_10062094	3300027676	Forest Soil	MSKAIVRFLAIVGALFLIGLVIVTVTVIGKKGRVP
Ga0207862_11012631	3300027703	Tropical Forest Soil	MSSLWKAIVRFLAILGALWLIGMLIVLVTVIGSKGRVP
Ga0209517_105811362	3300027854	Peatlands Soil	MSKLIVRFLAILGALWLIGMVIVLVAVIGAKGKVP
Ga0209380_102191761	3300027889	Soil	MSKAIVRFLAILGALWLIGMVIVLVAVIGKKGRVPSK
Ga0209415_107636861	3300027905	Peatlands Soil	MSKLIVRFLAILGALWLIGMVIVLVAVIGMKGRVPSKTILEANFEQTFM
Ga0137415_102527431	3300028536	Vadose Zone Soil	MSKLIVRFFAILGALWLIGMVIVLVAVIGAKGRVPSKTILEANFEQ
Ga0302156_100365003	3300028748	Bog	MSKAIIRFLAILGALSLLSTAVVLIAVIGAKGRVPSKTILEADFEQTYLENSPETA
Ga0307504_102948271	3300028792	Soil	MSKVIVRFLAILGALWLVAMVIMIVAVIGSKGKVPEKTILEADFEQ
Ga0302228_104116681	3300028808	Palsa	MSKAIVRFLAILGALFLIGLVIVTVTVIGKKGRVPSRTILEANFDQTLLE
Ga0302163_100768702	3300028868	Fen	MSKVIVRFLAVLGALWLVGLGIVLFALMGAKGKVPSKTILEANFEQSLVEDI
Ga0247271_1163641	3300029903	Soil	MSKAIVRFLAILGALSLIGTAVVMIAVIGVRGKVPSKTILEANFEEAFPE
Ga0311340_101974293	3300029943	Palsa	MSKLIVRFLAILGALWLIGMVIVLVFVIGSKARVPSR
Ga0316363_102804171	3300030659	Peatlands Soil	MSKLIVRFLAILGALWLIGLVIVLVAVIGVKGKVPSKTILEADFEQTFL
Ga0302310_104569651	3300030737	Palsa	MSKAIVRFLAILGALFLIGLVIVTVTVIGKKGRVPSRTILEANFDQTLL
Ga0302325_128228571	3300031234	Palsa	MSKLIVRFLAILGALALIGMVIVMVVAIGAKGKVPSKTVLEANF
Ga0302326_120524412	3300031525	Palsa	MSKAIVRFLAILGALFLIGLVIVTVTVIGKKGRVPSKTILEANFDQTLL
Ga0307476_107727141	3300031715	Hardwood Forest Soil	MSKLIVRFLAILGALWLIGMAIVLFAVIRTKGTVPSKTVLEA
Ga0307476_114258982	3300031715	Hardwood Forest Soil	MFKLIVRFLAILGALGLIGLAIVLVAVIGVKGRVP
Ga0307469_122176661	3300031720	Hardwood Forest Soil	MSKLIVRFLAILGALWLVGMAIVLFAIIRTKGTVPSKTILEANFD
Ga0311301_128943282	3300032160	Peatlands Soil	MSKLIVRFLAILGALWLIGMVIVLVAVIGMKGRVPSKTILEANFEQTFLEDVP
Ga0335085_111086891	3300032770	Soil	MSKIIVRFLAILGALWIIAMVIMIVAVIGTKGKVPDKTILEANFEQA
Ga0335078_116097032	3300032805	Soil	MKLIVRFLAILGALWLVGMAIMLFFVISFKGKVPSKTILEANF
Ga0335081_116528052	3300032892	Soil	MSKLIVRFLAILGALWLIGMVIVLFAVIDLKGRVPSKTILEANFEKSFL
Ga0335077_117613881	3300033158	Soil	MSKLIVRFLAILGALWLIGMAVVLFVVIRTKGTIPS
Ga0326724_0642217_1_141	3300034091	Peat Soil	MSKAIVRFLAILGALFLIGLVIVLAAAIGVKGKVPSKTILEANFEQA