NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095815

Metagenome / Metatranscriptome Family F095815

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095815
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 40 residues
Representative Sequence GPQGSTFVSPSTLPASTASAPLGTSAAGNYYAGSANLG
Number of Associated Samples 87
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.96 %
% of genes near scaffold ends (potentially truncated) 97.14 %
% of genes from short scaffolds (< 2000 bps) 87.62 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (58.095 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(27.619 % of family members)
Environment Ontology (ENVO) Unclassified
(18.095 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.762 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.
1Ga0070709_102050181
2Ga0070713_1009534241
3Ga0070713_1020840361
4Ga0070713_1024302052
5Ga0070711_1015457752
6Ga0070705_1000226911
7Ga0068854_1021155502
8Ga0070762_106998181
9Ga0070765_1000835153
10Ga0070765_1004585581
11Ga0079221_105539372
12Ga0079221_117460412
13Ga0079220_101385761
14Ga0079220_110775822
15Ga0075424_1016754551
16Ga0075435_1006677522
17Ga0075435_1014236602
18Ga0116221_11300391
19Ga0116133_11889192
20Ga0116215_11624531
21Ga0116215_15202192
22Ga0116216_105213572
23Ga0105239_112151732
24Ga0136449_1020613922
25Ga0134121_111856602
26Ga0126350_101130691
27Ga0137388_107301992
28Ga0137362_103709291
29Ga0137384_101095781
30Ga0137385_116282051
31Ga0137419_115424632
32Ga0164302_100861581
33Ga0157374_106424651
34Ga0157375_105488731
35Ga0182000_100573651
36Ga0182036_116266691
37Ga0182035_109342242
38Ga0187806_12087991
39Ga0187803_103879072
40Ga0187779_101385402
41Ga0187816_101625232
42Ga0187883_103699121
43Ga0187851_101409561
44Ga0187851_103393812
45Ga0187766_100354161
46Ga0187766_107275212
47Ga0187772_110036902
48Ga0187772_114174341
49Ga0210403_109372372
50Ga0210396_102564081
51Ga0210397_102496731
52Ga0210389_106879802
53Ga0210389_111914351
54Ga0210387_101948532
55Ga0210387_118154092
56Ga0210391_106397541
57Ga0210390_103344881
58Ga0210390_111272601
59Ga0242659_11233902
60Ga0247687_10768701
61Ga0179589_100157102
62Ga0179589_104346501
63Ga0247667_10645832
64Ga0207687_101615881
65Ga0207679_116697031
66Ga0209687_10969391
67Ga0209178_12014911
68Ga0209177_100021731
69Ga0209624_100427347
70Ga0302219_103204931
71Ga0302231_104197851
72Ga0302221_101473061
73Ga0308309_111670272
74Ga0311354_113025281
75Ga0311354_117354601
76Ga0302311_101913841
77Ga0265459_108187422
78Ga0302308_107401361
79Ga0302325_103604191
80Ga0302325_107703722
81Ga0302324_1014678891
82Ga0302326_130475512
83Ga0318538_102456441
84Ga0318496_106385161
85Ga0318494_107227531
86Ga0318554_106193721
87Ga0318509_100050931
88Ga0318521_101943561
89Ga0318498_102640212
90Ga0318498_103747501
91Ga0318523_102850631
92Ga0318567_102581871
93Ga0307478_100514431
94Ga0318536_105497911
95Ga0307479_100222675
96Ga0318569_102239021
97Ga0318510_104166822
98Ga0318577_103992541
99Ga0306920_1020830352
100Ga0306920_1039715541
101Ga0335082_112810161
102Ga0335080_106759301
103Ga0335072_104416981
104Ga0335073_101283151
105Ga0318519_104422071
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: Yes Secondary Structure distribution: α-helix: 4.55%    β-sheet: 0.00%    Coil/Unstructured: 95.45%
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Variant

5101520253035GPQGSTFVSPSTLPASTASAPLGTSAAGNYYAGSANLGSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered RegionsSignal Peptide
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
41.9%58.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Peatland
Freshwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Peatlands Soil
Agricultural Soil
Soil
Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Palsa
Corn Rhizosphere
Populus Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Boreal Forest Soil
2.9%2.9%6.7%4.8%5.7%27.6%3.8%3.8%4.8%3.8%5.7%10.5%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070709_1020501813300005434Corn, Switchgrass And Miscanthus RhizosphereTGMAVQADASGSKFVAPATLPADTASAPLGTSAVGNYNAA*
Ga0070713_10095342413300005436Corn, Switchgrass And Miscanthus RhizosphereAVQAGPQGSTFVPPDSLPADTATAPLETSAHGNYYAGTANIG*
Ga0070713_10208403613300005436Corn, Switchgrass And Miscanthus RhizosphereTGQAVQAGPQGSTFVDPDSLPADTASAPLETSAPGNYYAHTANIG*
Ga0070713_10243020523300005436Corn, Switchgrass And Miscanthus RhizosphereEAVQAGPQGSTFVDPSSLPASTASAPLGTSATGNYFAGAANIR*
Ga0070711_10154577523300005439Corn, Switchgrass And Miscanthus RhizosphereTGEAVQAGPQGSTFVDPSSLPASTASAPLGTSATGNYFAGAANIR*
Ga0070705_10002269113300005440Corn, Switchgrass And Miscanthus RhizosphereSATGEAVQAGPQGSTFVSPDTLPASTASAPLGTSAHGNYYAGTANLG*
Ga0068854_10211555023300005578Corn RhizosphereVQAGPQGSTFVDPSSLPASTASAPLGTSATGNYFAGAANIR*
Ga0070762_1069981813300005602SoilVQAGPQGSTFVSPSSLPTSSASAPLGTSAAGNYYAGSANLG*
Ga0070765_10008351533300006176SoilGSQFVAPSSLPADTASSPLDTSAAGNYYAGSANIATAG*
Ga0070765_10045855813300006176SoilGSALGEAVEAGPQGSQFVSPSALPADTAAAPLGTSAAGNYFAGSANIG*
Ga0079221_1055393723300006804Agricultural SoilVQAGPQGSTFVSPDTLPVSTASAPLGTSAHGNYYARTANLG*
Ga0079221_1174604123300006804Agricultural SoilVQAGPQGSTFVDPSSLPASTASAPLGTSVAGNYFAGSANIG*
Ga0079220_1013857613300006806Agricultural SoilPQGSTFVAPDTLPASTASAPLGTSASGNYYAGTANLG*
Ga0079220_1107758223300006806Agricultural SoilGSTFVPPDSLPADTATAPLETSAHGNYYAGTANIG*
Ga0075424_10167545513300006904Populus RhizosphereGPQGSTFVAPDSLPADTANSPLETSAHGNYYANTANIR*
Ga0075435_10066775223300007076Populus RhizosphereVQAGPQGSTFVSPDTLPASTASAPLGTSASGNYYAGTANLG*
Ga0075435_10142366023300007076Populus RhizosphereAVQAGPQGSTFVSPDTLPASTASAPLGTSASGNYYAGTANLG*
Ga0116221_113003913300009523Peatlands SoilQGSEFVSPSLLPADTASAPLGTSAAGNYYAGSANLG*
Ga0116133_118891923300009623PeatlandSALGEAVAAGPQGSTFVSRSSLPADTATAPLQTSAGGNYFAGAPSLG*
Ga0116215_116245313300009672Peatlands SoilAGPQGSTFVSPSSLPADTATAPLQTSATGNYYAGAANLLG*
Ga0116215_152021923300009672Peatlands SoilGPQGSTFVSPSSLPADTATAPLQTSATGNYYAGAANLLG*
Ga0116216_1052135723300009698Peatlands SoilPQGSTFVSPSSLPADTATAPLGTSASGNYYAGAANLG*
Ga0105239_1121517323300010375Corn RhizosphereVQAGPQGSTFVDPSSLPASTASAPLSTSATGNYFAGAANIR*
Ga0136449_10206139223300010379Peatlands SoilPQGSTFVSPSSLPPDTATAPLETSESGNWYANTSNIATIGSIG*
Ga0134121_1118566023300010401Terrestrial SoilEAVQAGPQGSTFVDPSSLPASTASAPLGTSVTGNYFAGAANIG*
Ga0126350_1011306913300010880Boreal Forest SoilQGSTFVSPSSLPADTATAPLETSASGNYYAGAANILG*
Ga0137388_1073019923300012189Vadose Zone SoilAGPQGSTFVSPSSLPADTASAPVETSAAGNYYAGSANLG*
Ga0137362_1037092913300012205Vadose Zone SoilGSTFVSPSSLPASTASAPLGTSAAGNYYASSANLG*
Ga0137384_1010957813300012357Vadose Zone SoilGSTFVSPTSLPASTATAPLGTSASGNYFAGAANLR*
Ga0137385_1162820513300012359Vadose Zone SoilSTFVDPSSLPASTASAPLGTSAAGNYFAGSANLG*
Ga0137419_1154246323300012925Vadose Zone SoilGPQGSTFVSPSTLPASTASAPLGTSAAGNYYAGSANLG*
Ga0164302_1008615813300012961SoilQGSTFVSPDTLPASTASAPVGTSAHGNYYAGTANLG*
Ga0157374_1064246513300013296Miscanthus RhizosphereEAVQAGPQGSTFVSPSTLPDSTASAPVGTSAHGNYFAGSANLG*
Ga0157375_1054887313300013308Miscanthus RhizosphereSTFVSPSTLPDSTASAPVGTSAHGNYFAGSANLG*
Ga0182000_1005736513300014487SoilGPQGSTFVDPSSLPASTATAPLGTSASGNYFARTANIR*
Ga0182036_1162666913300016270SoilAGPQGSTFVSPSSLTADTVSAPLQTSVAGNYYAGSANIG
Ga0182035_1093422423300016341SoilPQGSKFVSPSSLPASTAAAPLGNSVAGNYYAGSANLGVIQG
Ga0187806_120879913300017928Freshwater SedimentMQAGPQGSQFVSPSSLPADTAASPLATSAAGNYYAGSANIG
Ga0187803_1038790723300017934Freshwater SedimentVQAGPQGSTFVSPSSLPADTASAPLGTSAPGNYYAGTANIG
Ga0187779_1013854023300017959Tropical PeatlandGPQGSEFVSPSSLPADTASAPLETAAAGNYYAGSANLG
Ga0187816_1016252323300017995Freshwater SedimentPQGSEFVSPSALPADTASAPLGTSAAGNYFAGSADLG
Ga0187883_1036991213300018037PeatlandMAVQAGPQGSTFVDPSSLPADTATAPLETSATGNYFAGSANIG
Ga0187851_1014095613300018046PeatlandAGPQGSTFVSPSSLPADTATAPVQTSAAGNYYIGAPSLG
Ga0187851_1033938123300018046PeatlandGEAVEAGPQGSTFVSPSSLPADTASAPLQTSAAGNYFAGAPSLG
Ga0187766_1003541613300018058Tropical PeatlandGSALGEAVVAGPRGSKFVSPSSLPGDPTTAPLGTSAAGNYYAGTANMG
Ga0187766_1072752123300018058Tropical PeatlandSALGQAVQAGPQGSQFVSPSSLPPDTATAPLGTSEAGNYDAYSGNIG
Ga0187772_1100369023300018085Tropical PeatlandGEAVEAGPQGSQFVSPSSLPPDTATAPLGTSAAGNYYVGTANIG
Ga0187772_1141743413300018085Tropical PeatlandSALGLAVEAGPQGSRFVPPSSLPADTATAPLGTAAAGNYFAGSPNIG
Ga0210403_1093723723300020580SoilEAVQAGPQGSTFVSPSSLAASTASAPLGTSAAGNYFAGSANLR
Ga0210396_1025640813300021180SoilQGSQFVSPSSLPADTASSPLETSATGNYYAGSANIG
Ga0210397_1024967313300021403SoilQAGPQGSHFVSPSSLSADTASSPLETSATGNYDAGSANIG
Ga0210389_1068798023300021404SoilSATGEVVQAGPQGSTFVDPSSLPASTASAPLGTSATGNYFAGSANVG
Ga0210389_1119143513300021404SoilTGDAVQAGPQGSTFVSPSTLPDSTASAPLGTSAHGNYYAGTANLG
Ga0210387_1019485323300021405SoilTAGPQGSTFVAPSSLPADTATAPLGTSAIGNYYAGSANLG
Ga0210387_1181540923300021405SoilQGSQFVSPSSLSADTASSPLSTSATGNYYAGSANVASVG
Ga0210391_1063975413300021433SoilGSQFVSPASLPADTASAPLGTSVAGNYYAGTSNLS
Ga0210390_1033448813300021474SoilSALGEAVEAGPQGSQFVSPASLPADTASAPLGTSVAGNYYAGTSNLE
Ga0210390_1112726013300021474SoilGSQFVSPSSLPADTASSPLETSAAGNYYAGSANIG
Ga0242659_112339023300022522SoilVKGSALGMAGQAGPQGSHFVSPWLLPADTASSPLETSATGNCDA
Ga0247687_107687013300024286SoilGPQGSTFVSPDTLPASTASAPVGTSAHGNYYAGTANLG
Ga0179589_1001571023300024288Vadose Zone SoilEAVQAGPQGSTFVSPSSLPASAASAPLGTSAAGNYFAGSANLR
Ga0179589_1043465013300024288Vadose Zone SoilQGSTFVSPDTLPASTVSAPLGTSAHGNYYAGTANLG
Ga0247667_106458323300024290SoilQGSTFVSPDTLPASTASAPVGTSAHGNYYAGTANLG
Ga0207687_1016158813300025927Miscanthus RhizosphereAVQAGPQGSTFVSPDTLPASTASAPLGTSAHGNYYAGTANLG
Ga0207679_1166970313300025945Corn RhizosphereGSTFVSPDTLPVSTASAPLGTSAHGNYYAGTANLG
Ga0209687_109693913300026322SoilGSTFVSPSSLPASTASAPLGTSASGNYFAGSANIR
Ga0209178_120149113300027725Agricultural SoilGPQGSTFVSPSTLPASTASAPLGTSAHGNYYARTANLG
Ga0209177_1000217313300027775Agricultural SoilGQAVQAGPQGSTFVAPDTLPASTASAPLGTSASGNYYAGTANLG
Ga0209624_1004273473300027895Forest SoilDGSQFVSPSSLPADTAAAPLERSATGNYYAGSANIATVS
Ga0302219_1032049313300028747PalsaSALDEAVEAGPQGSTFVSPSSLPADTAAAPLQTSAAGNYYAGAAALG
Ga0302231_1041978513300028775PalsaSALDEAVEAGPQGSKFVSPSSLPADTGTTPLQTSAAGNYYAGTPALG
Ga0302221_1014730613300028806PalsaGPQGSQFVSPSSLPADIASSPLETSATGNYYAGTANIANVG
Ga0308309_1116702723300028906SoilGPQGSQFVAPSSLPADTASSPLDTSAAGNYYAGSANIATAG
Ga0311354_1130252813300030618PalsaGSTFVSPSSLPADNATAPLATSASGNYYAGAANLLG
Ga0311354_1173546013300030618PalsaQFVSPSSLPADTASSPLETSATGNYYAGTANIANVG
Ga0302311_1019138413300030739PalsaGPQGSQFVSPSSLPADTASSPLETSATGNYYAGTANIANVG
Ga0265459_1081874223300030741SoilVEAGPQGSKFVSPSSLPADTGTAPLQNSAAGNYYAGTPALG
Ga0302308_1074013613300031027PalsaGSTFVSRSSLPADTATAPLQTSAGGNYFAGAPSLG
Ga0302325_1036041913300031234PalsaGSTFVSPASLPADTAAAPLSTSAAGNYYAGAAWPT
Ga0302325_1077037223300031234PalsaVQAGPQGSTFVSPSSLPADTATAPGQTSAAGNYYAGAAALG
Ga0302324_10146788913300031236PalsaPQGSTFVSPSSLPADTATAPRQTSAAGNYFAGAAALG
Ga0302326_1304755123300031525PalsaQGSTFVSPSSLPADTATAPRQTSAAGNYFAGAAALG
Ga0318538_1024564413300031546SoilSQYLRGSALGKAVEAGPRGSRFVSPASLPPDAATAPLGTSEAGNFGAGAANIG
Ga0318496_1063851613300031713SoilVQAGPQGSTFVSPSSLASSTASAPLGTSATGNFYAGSANLG
Ga0318494_1072275313300031751SoilVQAGPQGSEFVSPSSLPADTASAPLETSAAGNYYAGSANIG
Ga0318554_1061937213300031765SoilVQAGPQGSTFVSPSSLPASTASVPLGTSATGNFYAGSANLG
Ga0318509_1000509313300031768SoilFVSPSSLPADTASAPLETSAAGNYYAGSANIGSLTG
Ga0318521_1019435613300031770SoilTFSQYLRGSALGKAVEAGPRGSRFVSPASLPPDTATAPLGTSEAGNFGAGAANIG
Ga0318498_1026402123300031778SoilQAGPQGSTFVSPSSLAPSTASAPLGTSATGNFYAGSANLG
Ga0318498_1037475013300031778SoilGPQGSTFVSPSSLPASTASVPLGTSASGNYYAGSANLG
Ga0318523_1028506313300031798SoilGMAVQAGPQGSEFVSPSSLPADTASAPLETSVAGNYYAGSANIGSLTG
Ga0318567_1025818713300031821SoilVRAGPQGSTFVSPSSLPASIAAAPLGTSAAGNYYAGSANLGVVQG
Ga0307478_1005144313300031823Hardwood Forest SoilVEAGPSGSKFVSPSSLPADTATAPVGTSAAGNYFAG
Ga0318536_1054979113300031893SoilGSTFVDPSSLPASTASAPLGTSARGNYFAGTANLG
Ga0307479_1002226753300031962Hardwood Forest SoilGRAVVAGPQGSEFVSPSAAPPSTATAPQGTSAPGNYNAGAA
Ga0318569_1022390213300032010SoilGPQGSTFVSPSSLPASTASVPLGTSATGNFYAGSANLG
Ga0318510_1041668223300032064SoilVSPSSLPADTASAPLETSAAGNYYAGSANIGSLTG
Ga0318577_1039925413300032091SoilGQAVQAGPQGSTFVSPSSLPASTASVPLGTSATGNFYAGSANLG
Ga0306920_10208303523300032261SoilVQAGPQGNTFVSPSSLPASTASVPLGTSATGNFYAGTANLG
Ga0306920_10397155413300032261SoilGSIFVSPSSLPVDTASAPLGTSASGNYYAGSANLG
Ga0335082_1128101613300032782SoilSATGEAVQAGPQGSTFVSPSSLPASTASVPLGTSATGNFYAGSANLG
Ga0335080_1067593013300032828SoilGSTFVSPSSLPASTASAPLGTSASGNYYADSGNLG
Ga0335072_1044169813300032898SoilVEAGPSGSTFVSPASLPADTASSPLETSAYGNYDAGTANISG
Ga0335073_1012831513300033134SoilGPQGSTFVSPSSLPADTATVPLGTSAPGNYYAGSANLGVIG
Ga0318519_1044220713300033290SoilAGPQGSEFVSPSSLPADTASAPLETSAAGNYYAGSANLG


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