Metagenome / Metatranscriptome Family F095793

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095793
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	45 residues
Representative Sequence	MCGRYRRTTSEEELARLYHIPIPKQTDLPISYNIAPSQKVLTI
Number of Associated Samples	81
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	40.00 %
% of genes near scaffold ends (potentially truncated)	88.57 %
% of genes from short scaffolds (< 2000 bps)	92.38 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.095 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.048 % of family members)
Environment Ontology (ENVO)	Unclassified (29.524 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.905 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.31% β-sheet: 0.00% Coil/Unstructured: 81.69%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00216	Bac_DNA_binding	2.86
PF00589	Phage_integrase	2.86
PF16576	HlyD_D23	1.90
PF01980	TrmO	1.90
PF00239	Resolvase	0.95
PF08378	NERD	0.95
PF01381	HTH_3	0.95
PF14023	DUF4239	0.95
PF01022	HTH_5	0.95
PF04679	DNA_ligase_A_C	0.95
PF00069	Pkinase	0.95
PF13676	TIR_2	0.95
PF13557	Phenol_MetA_deg	0.95
PF00657	Lipase_GDSL	0.95
PF01068	DNA_ligase_A_M	0.95
PF13193	AMP-binding_C	0.95
PF01527	HTH_Tnp_1	0.95
PF13492	GAF_3	0.95
PF01051	Rep_3	0.95
PF01471	PG_binding_1	0.95
PF13377	Peripla_BP_3	0.95
PF01740	STAS	0.95
PF01832	Glucosaminidase	0.95
PF04493	Endonuclease_5	0.95
PF04542	Sigma70_r2	0.95
PF05721	PhyH	0.95
PF13592	HTH_33	0.95
PF00583	Acetyltransf_1	0.95
PF00534	Glycos_transf_1	0.95
PF13561	adh_short_C2	0.95
PF00106	adh_short	0.95
PF00891	Methyltransf_2	0.95
PF03976	PPK2	0.95
PF10459	Peptidase_S46	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.81
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	2.86
COG1720	tRNA (Thr-GGU) A37 N6-methylase	Translation, ribosomal structure and biogenesis [J]	1.90
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.90
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.95
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.95
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.95
COG1515	Deoxyinosine 3'-endonuclease (endonuclease V)	Replication, recombination and repair [L]	0.95
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.95
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.95
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.95
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.95
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.95
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.95
COG5527	Protein involved in initiation of plasmid replication	Mobilome: prophages, transposons [X]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.10 %
All Organisms	root	All Organisms	41.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.10 %
cellular organisms	root	All Organisms → cellular organisms	41.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.10 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.10 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	7.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.71 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.90 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.10 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.90 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.95 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.95 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.10 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	2.86 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.95 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.95 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.10 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.90 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.90 %
Syntrophorhabdales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales	0.95 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.95 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	0.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.10 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.90 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	0.95 %
Syntrophorhabdaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae	0.95 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	0.95 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.95 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	0.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.10 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.90 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.95 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.95 %
Syntrophorhabdus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus	0.95 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.95 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	0.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.10 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.90 %
unclassified Syntrophorhabdus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus	0.95 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.95 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.95 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.95 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	0.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.10 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.90 %
Syntrophorhabdus sp. PtaU1.Bin050	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaU1.Bin050	0.95 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.95 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.95 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.95 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	0.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100324943	Not Available	541	Open in IMG/M
3300000789\|JGI1027J11758_12740049	All Organisms → cellular organisms → Bacteria	1975	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1048819	Not Available	597	Open in IMG/M
3300000955\|JGI1027J12803_108561543	Not Available	1379	Open in IMG/M
3300004152\|Ga0062386_100869355	Not Available	744	Open in IMG/M
3300004152\|Ga0062386_101256052	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300005187\|Ga0066675_10511734	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	898	Open in IMG/M
3300005332\|Ga0066388_100886353	All Organisms → cellular organisms → Bacteria	1473	Open in IMG/M
3300005445\|Ga0070708_100367663	All Organisms → cellular organisms → Bacteria	1356	Open in IMG/M
3300005445\|Ga0070708_102027841	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300005467\|Ga0070706_100290933	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300005467\|Ga0070706_100674391	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300005536\|Ga0070697_100012919	All Organisms → cellular organisms → Bacteria → Proteobacteria	6542	Open in IMG/M
3300005536\|Ga0070697_100159116	All Organisms → cellular organisms → Bacteria	1907	Open in IMG/M
3300005540\|Ga0066697_10653936	Not Available	578	Open in IMG/M
3300005610\|Ga0070763_10328760	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300005610\|Ga0070763_10349880	Not Available	822	Open in IMG/M
3300005610\|Ga0070763_10543589	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300005764\|Ga0066903_103564251	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300005921\|Ga0070766_10078813	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1913	Open in IMG/M
3300006176\|Ga0070765_100709690	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300010046\|Ga0126384_11042913	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300010047\|Ga0126382_11640348	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → unclassified Syntrophorhabdus → Syntrophorhabdus sp. PtaU1.Bin050	598	Open in IMG/M
3300010360\|Ga0126372_12696924	Not Available	549	Open in IMG/M
3300010361\|Ga0126378_10353256	Not Available	1580	Open in IMG/M
3300010376\|Ga0126381_105029939	Not Available	507	Open in IMG/M
3300012202\|Ga0137363_10309437	Not Available	1299	Open in IMG/M
3300012202\|Ga0137363_11150758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	660	Open in IMG/M
3300012205\|Ga0137362_10952271	Not Available	732	Open in IMG/M
3300012205\|Ga0137362_11149864	Not Available	659	Open in IMG/M
3300012351\|Ga0137386_11166210	Not Available	541	Open in IMG/M
3300012361\|Ga0137360_10027222	All Organisms → cellular organisms → Bacteria → Proteobacteria	3909	Open in IMG/M
3300012361\|Ga0137360_10393415	Not Available	1167	Open in IMG/M
3300012361\|Ga0137360_10723626	Not Available	855	Open in IMG/M
3300012361\|Ga0137360_11262426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300012362\|Ga0137361_10856131	Not Available	826	Open in IMG/M
3300012929\|Ga0137404_10944578	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300012960\|Ga0164301_10409400	Not Available	952	Open in IMG/M
3300013308\|Ga0157375_12201348	Not Available	657	Open in IMG/M
3300016270\|Ga0182036_10318594	Not Available	1188	Open in IMG/M
3300016294\|Ga0182041_10369270	Not Available	1212	Open in IMG/M
3300016319\|Ga0182033_10747041	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	859	Open in IMG/M
3300016357\|Ga0182032_10656496	Not Available	877	Open in IMG/M
3300016357\|Ga0182032_11913963	Not Available	519	Open in IMG/M
3300016371\|Ga0182034_10556327	Not Available	963	Open in IMG/M
3300016445\|Ga0182038_10495184	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1042	Open in IMG/M
3300016445\|Ga0182038_10672141	Not Available	900	Open in IMG/M
3300018034\|Ga0187863_10021477	All Organisms → cellular organisms → Bacteria	3927	Open in IMG/M
3300020579\|Ga0210407_11261122	Not Available	554	Open in IMG/M
3300020581\|Ga0210399_11339298	Not Available	562	Open in IMG/M
3300020582\|Ga0210395_10141834	All Organisms → cellular organisms → Bacteria	1790	Open in IMG/M
3300020583\|Ga0210401_10988447	Not Available	700	Open in IMG/M
3300021171\|Ga0210405_10101350	Not Available	2272	Open in IMG/M
3300021171\|Ga0210405_10644258	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300021178\|Ga0210408_10708951	Not Available	792	Open in IMG/M
3300021178\|Ga0210408_11236873	Not Available	569	Open in IMG/M
3300021361\|Ga0213872_10016718	Not Available	3402	Open in IMG/M
3300021361\|Ga0213872_10094885	Not Available	1332	Open in IMG/M
3300021361\|Ga0213872_10347542	Not Available	609	Open in IMG/M
3300021403\|Ga0210397_10454990	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300021403\|Ga0210397_10964495	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300021405\|Ga0210387_10005372	All Organisms → cellular organisms → Bacteria	9799	Open in IMG/M
3300021444\|Ga0213878_10478256	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
3300021478\|Ga0210402_11762198	Not Available	545	Open in IMG/M
3300021559\|Ga0210409_10903353	All Organisms → cellular organisms → Bacteria → Proteobacteria	757	Open in IMG/M
3300021560\|Ga0126371_11828426	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300025320\|Ga0209171_10339623	Not Available	788	Open in IMG/M
3300025910\|Ga0207684_11028229	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	688	Open in IMG/M
3300025916\|Ga0207663_11176479	Not Available	617	Open in IMG/M
3300025916\|Ga0207663_11256358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	596	Open in IMG/M
3300025922\|Ga0207646_10704519	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300025922\|Ga0207646_11407843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300026496\|Ga0257157_1093972	Not Available	523	Open in IMG/M
3300026557\|Ga0179587_10295626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1043	Open in IMG/M
3300026999\|Ga0207949_1009278	Not Available	889	Open in IMG/M
3300027521\|Ga0209524_1048977	Not Available	891	Open in IMG/M
3300027583\|Ga0209527_1075390	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300027651\|Ga0209217_1192452	Not Available	551	Open in IMG/M
3300027727\|Ga0209328_10156834	Not Available	691	Open in IMG/M
3300027812\|Ga0209656_10301439	Not Available	741	Open in IMG/M
3300027889\|Ga0209380_10705030	Not Available	579	Open in IMG/M
3300027895\|Ga0209624_10484024	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300029636\|Ga0222749_10436758	Not Available	699	Open in IMG/M
3300031708\|Ga0310686_106667867	All Organisms → cellular organisms → Bacteria	2718	Open in IMG/M
3300031744\|Ga0306918_10644121	Not Available	830	Open in IMG/M
3300031753\|Ga0307477_10533097	Not Available	796	Open in IMG/M
3300031771\|Ga0318546_11292844	Not Available	512	Open in IMG/M
3300031833\|Ga0310917_10160372	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1489	Open in IMG/M
3300031890\|Ga0306925_10395521	All Organisms → cellular organisms → Bacteria	1481	Open in IMG/M
3300031890\|Ga0306925_11723261	Not Available	604	Open in IMG/M
3300031912\|Ga0306921_10284539	Not Available	1936	Open in IMG/M
3300031912\|Ga0306921_11850918	Not Available	647	Open in IMG/M
3300031942\|Ga0310916_10457248	Not Available	1087	Open in IMG/M
3300031945\|Ga0310913_10798411	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	666	Open in IMG/M
3300031954\|Ga0306926_12046379	Not Available	642	Open in IMG/M
3300031962\|Ga0307479_10686111	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300031962\|Ga0307479_12016794	Not Available	526	Open in IMG/M
3300032001\|Ga0306922_10858254	Not Available	945	Open in IMG/M
3300032076\|Ga0306924_11215237	Not Available	815	Open in IMG/M
3300032160\|Ga0311301_11719690	Not Available	753	Open in IMG/M
3300032205\|Ga0307472_100403530	Not Available	1144	Open in IMG/M
3300032261\|Ga0306920_101112943	Not Available	1145	Open in IMG/M
3300032261\|Ga0306920_101125920	Not Available	1137	Open in IMG/M
3300032955\|Ga0335076_10137241	Not Available	2365	Open in IMG/M
3300033289\|Ga0310914_10770892	Not Available	859	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.19%
Host-Associated	Host-Associated	3.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.43%
Aquatic	Environmental → Aquatic	4.76%
Plants	Host-Associated → Plants	3.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.43%
Freshwater	Environmental → Aquatic → Freshwater	3.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.81%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Loam	Environmental → Terrestrial → Soil → Loam	23.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.81%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.95%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.81%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.95%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.14%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.43%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.81%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.95%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.95%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.95%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026999	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1003249431	3300000364	Soil	MCGRYRRTTREKELARIYRIAIPVQLDLPISYNIPLASQ
JGI1027J11758_127400491	3300000789	Soil	MCGRYRRTSSEEELCRLYNIPIPPQLDLPVSYNIAPSQKVLAIRFNLKTN
AP72_2010_repI_A100DRAFT_10488192	3300000837	Forest Soil	MCGHYRRTTQEEELARLYHIPIPKQTDLPISYNVAP
JGI1027J12803_1085615433	3300000955	Soil	MCGRYRRTASEEEAARLYHIPIPSQTDLPLSYLAIV
Ga0062386_1008693551	3300004152	Bog Forest Soil	IRQNPHIRMCGRRTTQEEELARIYHIPIPKQTDLPISYNIAPSQNVLTIQFNSETQQRSLDALQGD*
Ga0062386_1012560522	3300004152	Bog Forest Soil	GRYRRTTKEEELARIYNIPIPEQPDLPVSYNIAPSQDILAIRFNPETGERC*
Ga0066675_105117341	3300005187	Soil	MCGRYRRTTQEEELARLYHIPIPKQPDLPISYNIAPSQKVLAIRF
Ga0066388_1008863534	3300005332	Tropical Forest Soil	MEKIVMCGRYRRTTSEEELARLYHIPIPPQRDLPISWNIAP
Ga0070708_1003676631	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MCGRYRRTTQEEELARLYHIPIPRQTDLPISYNIAPSQKVLTIRFNRETQQR
Ga0070708_1020278412	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MCGRYRRTTQEEELARLYHIPIPKQTNLPISYNIAPSQKVLTIRFNP
Ga0070706_1002909332	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MGGRYRRTTSEEELARIYHIPIPKQTDLPINYNIAPSQKVLTIRFNPEIQQRSLDALQ*
Ga0070706_1006743911	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MCERYRRTTKEEEGARQCNIRIPPQLDLPISYNTAPSQNVLVMA*
Ga0070697_1000129196	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RYRRTTQEEELARLYHIPIPKQTDLPISYNIAPRQKVLTIRFNPETQARSLDALHGD*
Ga0070697_1001591161	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIAPRQKV
Ga0066697_106539362	3300005540	Soil	MCGRYRRTTSEEELARIYHIPIPKQTDLPISYNIAPSQKV
Ga0070763_103287601	3300005610	Soil	MCGRYRRTTAEEEIARQFNIPIPPQLDLPISYNIAPTQNIL
Ga0070763_103498801	3300005610	Soil	MCGRYRRTTAQEELARRYNIPIPPQRDLPISWNIAPAQDVLA
Ga0070763_105435893	3300005610	Soil	MCGRYRRTTSEEELARRYHIPIPKELDLPISYNIAP
Ga0066903_1035642512	3300005764	Tropical Forest Soil	MCGRYRRTSQEEELARLYRIPIPKQTDLPISFNIAPSQKVLAVRYDAKNSA
Ga0070766_100788135	3300005921	Soil	MCGRYRRTSSEEELCKIYKIPFPRQLDLPVSYNIAPTLRILAIAVVTHFA
Ga0070765_1007096901	3300006176	Soil	MRVRYRRATAEEEIARQYHIPIPPQLDLPISYNIAPTQD
Ga0126384_110429131	3300010046	Tropical Forest Soil	MCGRYRRTTSEEELARLYHIPIPSQRDLPISWNVAPSQDVLVIRYNTKAEQRS
Ga0126382_116403482	3300010047	Tropical Forest Soil	MCGRYRRTTAEEELARCYHIPIPPQRDLPIIWNIA
Ga0126372_126969241	3300010360	Tropical Forest Soil	MCGRYRRTTSEEELAGLYHIPIPKQTDLPISYNIAPSQKILTI*
Ga0126378_103532563	3300010361	Tropical Forest Soil	MCGRHRRTAQEEELARLYHIPIPKQTDLPISYNVAPSQKVLSIR
Ga0126381_1050299391	3300010376	Tropical Forest Soil	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNVAPSQKVLSI
Ga0137363_103094371	3300012202	Vadose Zone Soil	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIVPSQKVLTIRFNPETQAR
Ga0137363_111507582	3300012202	Vadose Zone Soil	MNSSYRTTKEEELARLYHIPIPKQTDLPISYNVAPSQKVLTIRFNPETQARSLDAL
Ga0137362_109522712	3300012205	Vadose Zone Soil	MCGRYRRTTQEEELARLYHIPIPRQTDLPISYNIAPS
Ga0137362_111498641	3300012205	Vadose Zone Soil	MCGRYRRTTREDELARQYKIPIPPQLDLPISYNIAPSQNVFAIRFNPKRAQLSI*
Ga0137386_111662101	3300012351	Vadose Zone Soil	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIAPSQKV
Ga0137360_100272221	3300012361	Vadose Zone Soil	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIAPSQKVLT
Ga0137360_103934152	3300012361	Vadose Zone Soil	MCGRYRRTTSEEELARLYHIPIPKQTDLPISYNIAPSQKVLTI
Ga0137360_107236263	3300012361	Vadose Zone Soil	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIAPSQKVLTIRFNPE
Ga0137360_112624261	3300012361	Vadose Zone Soil	MCGRYRRTTREEELARIYRIPIPSQPDLPISHNIAQVRKSSR
Ga0137361_108561312	3300012362	Vadose Zone Soil	MCGRYRRTTSEEELARLYHIPIPKQTDLPISYNIAPSQK
Ga0137404_109445781	3300012929	Vadose Zone Soil	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIAPSQKVLTIRFNPETQHGRSMRCNGD
Ga0164301_104094001	3300012960	Soil	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIAPSQKVLTIRFNRIRLTNPIW
Ga0157375_122013482	3300013308	Miscanthus Rhizosphere	MVVPTCADRRTTSEEELARRYHIAIPSERDLPISWNIAPTQDVLAIRFQPT
Ga0182036_103185941	3300016270	Soil	MCGRYRRTTSEEELARLYHIPIPPQRDLPISWNIAPSQD
Ga0182041_103692701	3300016294	Soil	MCGRYRRTTSEEELARLYHIPIPNQTDLPISYNIAPSQKVLTI
Ga0182033_107470412	3300016319	Soil	MCGRYRRTTSEEELARLYHIPIPSQTDLPISYNIAPSQKVLAIRFNLKS
Ga0182032_106564961	3300016357	Soil	MCGRYRRTTSEEELARLYHIPIPSQTDLPISYNIAPSQKVLTIRFKSEVVVVPFC
Ga0182032_119139631	3300016357	Soil	MCGRYRRTTSEEELARLYHIPIPKQTDLPISYNNAPSQKVLTIRFHPQTRQRSRSARR
Ga0182034_105563272	3300016371	Soil	TTQEEELTQPYHIPVPKQTDSPISYNVARSQKLSTIRI
Ga0182038_104951841	3300016445	Soil	MCGRYRRTTSEEELARLYHIPIPPQRDLPISWNIAP
Ga0182038_106721413	3300016445	Soil	MCGRYRRTTQEEELVRLYHIPIPKQTDLPISYNVAPSQKVLSIRFNPETRARSLDALQ
Ga0187863_100214771	3300018034	Peatland	MCGRYRRTTAEDELARRYGVEIPRERDLPISWNIAPAQDILAIRYNPESKQ
Ga0210407_112611221	3300020579	Soil	MCGRYRRTTREEELARRWSIPIPVQSDLPISWNVTPSTEVL
Ga0210399_113392981	3300020581	Soil	MCGRYRRTTQEEELARIYHVPIPKQTDLPISYNADDTGR
Ga0210395_101418341	3300020582	Soil	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIAPSQK
Ga0210401_109884472	3300020583	Soil	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIAPSQKVLTIRFNLATQQRSL
Ga0210405_101013504	3300021171	Soil	MCGRYRRTTQEEELARLYHIPIPISYNIAPSPSQKVLAIRYNRKSQERSLDALQ
Ga0210405_106442581	3300021171	Soil	MCGRYRRTSREEEVARLYHIPIPKQTDLPISYNIAPSQKVL
Ga0210408_107089511	3300021178	Soil	MCVRYRRTTPEEQLARLYHIPIPKQTDLPISYNIAPSQKVLTIRFNPEI
Ga0210408_112368732	3300021178	Soil	MCGRYRRTTHEEELARLYHIPIPKQTDLPISYNIAP
Ga0213872_100167187	3300021361	Rhizosphere	MCGRNHRRTTAEEELARRYHIPIPPQRDLPIAWNIAL
Ga0213872_100948853	3300021361	Rhizosphere	MCGRYRRTTSEEELARIYHIPIPKQTDLPISYNIAPSQKVLTIRFNPQI
Ga0213872_103475422	3300021361	Rhizosphere	MCGRYRRTTSEEELARLYHIPILSQTDLPISYNIAPSQKVLAI
Ga0210397_104549901	3300021403	Soil	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIAP
Ga0210397_109644951	3300021403	Soil	MCGRYRRTTAEEELARRYHIPIPRQRDLPISWNIAPSEDVLAVRYNHETKQRS
Ga0210387_1000537218	3300021405	Soil	RRTTSEEELASLYHIPIPSQTDLPISYNIAPSQKVLTIRFNPKSQQRSLDALQ
Ga0213878_104782562	3300021444	Bulk Soil	MCGRYRRTTREEELARRYKIAIPRQTDLPISWNIAPGEKILA
Ga0210402_117621981	3300021478	Soil	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIVP
Ga0210409_109033532	3300021559	Soil	MCGRYRRTTQEEELAQLYHIPIPKQTDLPISCNIAPSQKVLTIRFNADTQQR
Ga0126371_118284261	3300021560	Tropical Forest Soil	MCGRYRRTTGEEELARLYHIPIPPQRDLPISWNIAPSQDV
Ga0209171_103396231	3300025320	Iron-Sulfur Acid Spring	MCGRYRRTTQEEELARIYHVPIPKQTDLPISYNIAPSQKVLTIRFNRETQQRSL
Ga0207684_110282291	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIAPSQKVLTIRFNP
Ga0207663_111764792	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MCGRYRRTTKEEELARLYHIPIPKQTDLPISYNIDPSQKVLTIRFNPETQAR
Ga0207663_112563582	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MCGRYRRTSSEEELCRIYNIAIPPQLDLPVSYNIAPSQKGTRNPIQS
Ga0207646_107045192	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MCGRYRRTTQEEELARLYHIPIPKQTNLPISYNIAPS
Ga0207646_114078431	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIAPS
Ga0257157_10939722	3300026496	Soil	MCGRYRRTTREEELARIYRIPIPSQPDLPISYNIAPSQEVL
Ga0179587_102956264	3300026557	Vadose Zone Soil	MCGRYRRTTQEEELASLYHIPIPKQTDLPISYNIAPSQKVLTIRFNP
Ga0207949_10092782	3300026999	Forest Soil	MCGRYRRTTQEEELARLYHTPIPKQTDLPISYNIAPSQKVLTIRFNLRLGH
Ga0209524_10489774	3300027521	Forest Soil	MCGRYRRTTREEELARIYRIPIPSQPDLPISYNIAPS
Ga0209527_10753901	3300027583	Forest Soil	MCGRYHRTTREEELARIYRIPIPSQSGLPISYNIAPSQEVLAIRFNP
Ga0209217_11924521	3300027651	Forest Soil	MCGRYRRTTQEEELARIYHIPIPKQTDLPISYNIAPSQKVLTIRFNSESRARSLDV
Ga0209328_101568341	3300027727	Forest Soil	MCGRYRRTSSEEELCKIYKIPIPPQLDLPVSYNIAPTLR
Ga0209656_103014392	3300027812	Bog Forest Soil	RQNPHIRMCGRRTTQEEELARIYHIPIPKQTDLPISYNIAPSQNVLTIQFNSETQQRSLDALQGD
Ga0209380_107050302	3300027889	Soil	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIVPSQKVLTIRFNPEIQQRSLDALQCGLI
Ga0209624_104840241	3300027895	Forest Soil	MCRRYGRTTAEEELPRWYHVPIPPQSDLSISWNIAPREGVVAIQV
Ga0222749_104367582	3300029636	Soil	MCGRYRRTTQEEELARLYHIPIPRQTDLPISYNIAPSQRVLTIRFNP
Ga0310686_1066678675	3300031708	Soil	MCGRYRRTTADEELAMRYGVPIPLERDLPISWNIAPTQDVLAIPVQS
Ga0306918_106441211	3300031744	Soil	MEKIVMCGRYRRTTSEEELARLYHIPIPPQRDLPISWNVAPSQDVLV
Ga0307477_105330971	3300031753	Hardwood Forest Soil	MCGRYRRTSSEEELCRIYNIAIPPQLDLPVSYNIAPSQK
Ga0318546_112928442	3300031771	Soil	MCGRYRRTTQEEELARLYHIPIPKQTDLPISYNIAPSQKVLTIRFN
Ga0310917_101603721	3300031833	Soil	MCRRYRRTTSQGRRARTRLYHILIPKQTDLPISYNIASIQKVLTIRFNPETRERSLDALQWGLI
Ga0306925_103955214	3300031890	Soil	LARLYHIPIPKQTDLPISYNIAPSQKVLAIRFNPKSQQRSLDACERTIA
Ga0306925_117232611	3300031890	Soil	HSLAMCGRYRRTTAEEEIAHQYHIPISPQLDLPISYNIAPTQNILGIATS
Ga0306921_102845393	3300031912	Soil	MCGRYRRTTQEEELARLYHIPIPRQTDLPISYNIAPSQKVLTIRF
Ga0306921_118509182	3300031912	Soil	MCARYTSEEELARLYHIPIPSQTDLPISYNIAPSQKVLTI
Ga0310916_104572481	3300031942	Soil	MCGHYRRTTQEEELARLYHIPIPKQTDLPISYNVAPSQKVLSIRFNQE
Ga0310913_107984111	3300031945	Soil	MCGRYRRTTSEEELARLYHIPNPKQADLPISHNIAPSQRVL
Ga0306926_120463791	3300031954	Soil	MCGHYRRATQEEELARLYHIPIPKQTDLPISYNVAPSQKVLSIRFNPETRARSLDA
Ga0307479_106861112	3300031962	Hardwood Forest Soil	MCGRYGLTTAEEELARGYHIPVPPQRDLPISWNIAPTEDVLAIRFNPELITLDV
Ga0307479_120167941	3300031962	Hardwood Forest Soil	MCGRYRRTTSEEELARRYHIPIPKETDLPISYNIAPSQKVLTIRFNP
Ga0306922_108582542	3300032001	Soil	MCGHYRRTTQEEELARLYHIPIPKQTDLPISYNVAPSQK
Ga0306924_112152371	3300032076	Soil	MCGRYRRTTQEEELARLYHIPIPIQTDLPVSYNIAPSQNVLAIRF
Ga0311301_117196901	3300032160	Peatlands Soil	MCGRYRRTTAEEELARRYHIPIPRQRDLPISWNIAP
Ga0307472_1004035303	3300032205	Hardwood Forest Soil	MCGRYRRTTREEELARLYHIPIPKQTDLPISYNIAP
Ga0306920_1011129432	3300032261	Soil	MCGRYRRTTQEEELARLYHIPIPIQTDLPVSYNIAP
Ga0306920_1011259201	3300032261	Soil	MCGHYRRTTQEEELARLYHIPIPKQTDLPISYNVAPSQKVLSIRF
Ga0335076_101372414	3300032955	Soil	MCGRYRRTTAEEEIARQYHIPMPPRLDLPISYNIAPSQNIL
Ga0310914_107708921	3300033289	Soil	MCGRYRRTTSEEELARLYHIPIPPQRDLPISWNIAPS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095793

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences