Metagenome Family F095781

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095781
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	61 residues
Representative Sequence	MAFPHPKSRKDHYRNGDVPNNGGVVWKFFKRTINITDYGNAKDDVNPAKNRTFGGI
Number of Associated Samples	88
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	14.58 %
% of genes near scaffold ends (potentially truncated)	60.00 %
% of genes from short scaffolds (< 2000 bps)	82.86 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.381 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (16.191 % of family members)
Environment Ontology (ENVO)	Unclassified (31.429 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.714 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.19% β-sheet: 0.00% Coil/Unstructured: 73.81%
Feature Viewer

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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF14066	DUF4256	17.14
PF08818	DUF1801	13.33
PF13376	OmdA	7.62
PF00903	Glyoxalase	7.62
PF01266	DAO	4.76
PF04542	Sigma70_r2	1.90
PF13673	Acetyltransf_10	1.90
PF01797	Y1_Tnp	1.90
PF03734	YkuD	1.90
PF03625	DUF302	0.95
PF10592	AIPR	0.95
PF01544	CorA	0.95
PF00441	Acyl-CoA_dh_1	0.95
PF13240	zinc_ribbon_2	0.95
PF12840	HTH_20	0.95
PF01872	RibD_C	0.95
PF12681	Glyoxalase_2	0.95
PF16655	PhoD_N	0.95
PF00144	Beta-lactamase	0.95
PF08327	AHSA1	0.95
PF02371	Transposase_20	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	13.33
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	13.33
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	13.33
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.90
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.90
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	1.90
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	1.90
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.90
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	1.90
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.90
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.95
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.95
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.95
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.95
COG3439	Uncharacterized conserved protein, DUF302 family	Function unknown [S]	0.95
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.95
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.95
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.38 %
Unclassified	root	N/A	27.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.38 %
Unclassified	root	N/A	27.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.38 %
Unclassified	root	N/A	27.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.62 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	11.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.86 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.90 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.62 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.57 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.86 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.86 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.57 %
Micropepsales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales	2.86 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	2.86 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.90 %
Longimicrobiia	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.57 %
Micropepsaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae	2.86 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	2.86 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.90 %
Longimicrobiales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.57 %
Rhizomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium	2.86 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	2.86 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	0.95 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.95 %
Longimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.57 %
Rhizomicrobium electricum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → Rhizomicrobium electricum	2.86 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	2.86 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.95 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.95 %
Longimicrobium	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae → Longimicrobium	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.57 %
Rhizomicrobium electricum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → Rhizomicrobium electricum	2.86 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	2.86 %
Longimicrobium terrae	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae → Longimicrobium → Longimicrobium terrae	0.95 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.95 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000650\|AP72_2010_repI_A1DRAFT_1005310	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300001431\|F14TB_100240915	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300002090\|JGI24806J26614_1009203	All Organisms → cellular organisms → Bacteria	1663	Open in IMG/M
3300002886\|JGI25612J43240_1003579	All Organisms → cellular organisms → Bacteria	2060	Open in IMG/M
3300004463\|Ga0063356_102712201	Not Available	762	Open in IMG/M
3300005178\|Ga0066688_10760249	Not Available	610	Open in IMG/M
3300005186\|Ga0066676_10026847	All Organisms → cellular organisms → Bacteria → Proteobacteria	3083	Open in IMG/M
3300005289\|Ga0065704_10695588	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300005289\|Ga0065704_10704075	Not Available	560	Open in IMG/M
3300005332\|Ga0066388_100023436	All Organisms → cellular organisms → Bacteria	5519	Open in IMG/M
3300005440\|Ga0070705_100971499	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300005440\|Ga0070705_101589378	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300005441\|Ga0070700_100066958	All Organisms → cellular organisms → Bacteria	2281	Open in IMG/M
3300005456\|Ga0070678_101477148	Not Available	636	Open in IMG/M
3300005467\|Ga0070706_100665791	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300005518\|Ga0070699_101592183	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300005536\|Ga0070697_100465380	All Organisms → cellular organisms → Bacteria → Proteobacteria	1103	Open in IMG/M
3300005536\|Ga0070697_100496789	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300005546\|Ga0070696_100535075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	937	Open in IMG/M
3300005546\|Ga0070696_101339811	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300005575\|Ga0066702_10927736	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300005591\|Ga0070761_10114003	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300005764\|Ga0066903_100993709	All Organisms → cellular organisms → Bacteria	1533	Open in IMG/M
3300005764\|Ga0066903_101538451	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300006176\|Ga0070765_101103507	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300006237\|Ga0097621_100490094	Not Available	1112	Open in IMG/M
3300006904\|Ga0075424_101730490	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300009143\|Ga0099792_10824893	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300009176\|Ga0105242_12284586	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300009553\|Ga0105249_10511691	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300012202\|Ga0137363_10590981	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300012206\|Ga0137380_10778846	Not Available	827	Open in IMG/M
3300012209\|Ga0137379_10361834	All Organisms → cellular organisms → Bacteria → Proteobacteria	1360	Open in IMG/M
3300012209\|Ga0137379_11580424	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300012211\|Ga0137377_11069589	All Organisms → cellular organisms → Bacteria → Proteobacteria	737	Open in IMG/M
3300012356\|Ga0137371_11437946	Not Available	504	Open in IMG/M
3300012685\|Ga0137397_10698002	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	754	Open in IMG/M
3300012923\|Ga0137359_10164040	All Organisms → cellular organisms → Bacteria	1983	Open in IMG/M
3300012924\|Ga0137413_11507639	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300012925\|Ga0137419_11098894	Not Available	662	Open in IMG/M
3300012925\|Ga0137419_11922207	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300012929\|Ga0137404_11614098	Not Available	601	Open in IMG/M
3300012929\|Ga0137404_11875120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → Rhizomicrobium electricum	558	Open in IMG/M
3300012930\|Ga0137407_12111794	Not Available	538	Open in IMG/M
3300012971\|Ga0126369_12643009	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300012984\|Ga0164309_11096181	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300013306\|Ga0163162_12615063	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300013307\|Ga0157372_13088917	Not Available	532	Open in IMG/M
3300015245\|Ga0137409_10642140	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	893	Open in IMG/M
3300015374\|Ga0132255_106240594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → Rhizomicrobium electricum	504	Open in IMG/M
3300016341\|Ga0182035_11487030	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300016422\|Ga0182039_10550142	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300017930\|Ga0187825_10361022	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300017948\|Ga0187847_10569847	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300018072\|Ga0184635_10186314	Not Available	828	Open in IMG/M
3300018090\|Ga0187770_10766591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → Rhizomicrobium electricum	771	Open in IMG/M
3300018422\|Ga0190265_11724974	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae → Longimicrobium → Longimicrobium terrae	736	Open in IMG/M
3300018920\|Ga0190273_11459362	Not Available	602	Open in IMG/M
3300019879\|Ga0193723_1066748	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1041	Open in IMG/M
3300019886\|Ga0193727_1023563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2172	Open in IMG/M
3300020579\|Ga0210407_10057795	All Organisms → cellular organisms → Bacteria	2902	Open in IMG/M
3300020579\|Ga0210407_10236302	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300020579\|Ga0210407_10832178	Not Available	710	Open in IMG/M
3300021405\|Ga0210387_10088768	All Organisms → cellular organisms → Bacteria	2566	Open in IMG/M
3300021406\|Ga0210386_10651999	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	908	Open in IMG/M
3300021407\|Ga0210383_10496704	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300021477\|Ga0210398_10481965	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300025910\|Ga0207684_10385728	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300025919\|Ga0207657_10713414	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300025939\|Ga0207665_10026721	All Organisms → cellular organisms → Bacteria	3812	Open in IMG/M
3300025986\|Ga0207658_11793248	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300026075\|Ga0207708_10448652	Not Available	1074	Open in IMG/M
3300026538\|Ga0209056_10154058	All Organisms → cellular organisms → Bacteria → Acidobacteria	1755	Open in IMG/M
3300026693\|Ga0208709_101848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	844	Open in IMG/M
3300027444\|Ga0207468_1006734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	613	Open in IMG/M
3300027875\|Ga0209283_10130863	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300027895\|Ga0209624_10651676	Not Available	697	Open in IMG/M
3300028747\|Ga0302219_10144462	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300028780\|Ga0302225_10213722	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300028906\|Ga0308309_10182395	All Organisms → cellular organisms → Bacteria	1716	Open in IMG/M
3300031231\|Ga0170824_101078510	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300031231\|Ga0170824_103206993	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300031231\|Ga0170824_114390826	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300031231\|Ga0170824_122082715	Not Available	712	Open in IMG/M
3300031474\|Ga0170818_108071725	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300031545\|Ga0318541_10508479	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300031562\|Ga0310886_11156051	Not Available	501	Open in IMG/M
3300031740\|Ga0307468_100695386	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300031740\|Ga0307468_100892192	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300031753\|Ga0307477_10131038	All Organisms → cellular organisms → Bacteria	1749	Open in IMG/M
3300031890\|Ga0306925_10081807	All Organisms → cellular organisms → Bacteria → Acidobacteria	3415	Open in IMG/M
3300031901\|Ga0307406_10685178	Not Available	854	Open in IMG/M
3300031942\|Ga0310916_11461818	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300031962\|Ga0307479_11753650	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300032160\|Ga0311301_11886606	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300032896\|Ga0335075_10952634	Not Available	778	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.86%
Host-Associated	Host-Associated	17.14%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.00%
Plants	Host-Associated → Plants	17.14%
Aquatic	Environmental → Aquatic	2.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.10%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.62%
Freshwater	Environmental → Aquatic → Freshwater	1.90%
Peat	Environmental → Terrestrial → Peat	1.90%
Sediment	Environmental → Aquatic → Sediment	0.95%
Roots	Host-Associated → Plants → Roots	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.29%
Loam	Environmental → Terrestrial → Soil → Loam	21.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.95%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.95%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.95%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.95%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.19%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.95%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.95%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.95%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.95%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000650	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A1	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002090	Soil microbial communities from Manhattan, Kansas, USA - Sample 200um MDA	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026693	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN595 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027444	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1w-11 (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A1DRAFT_10053102	3300000650	Forest Soil	MAFPHPQSRKDNYRKGDIPNDGGVVWKLFKGAINVTEYRNAEDDVDRAKNRTFGSISHSVPFR*
F14TB_1002409153	3300001431	Soil	MAFPHPQSRKGNYWKGDIPNHRGVIWKFFKRTINITDDRDGEEEVSPAKNRT
JGI24806J26614_10092033	3300002090	Soil	MAFPHPKSCKDEYRNGDKPNNRCVVWKFFKRTINIPNYRNGQDDVNPAKNRTFGGLTHLL
JGI25612J43240_10035791	3300002886	Grasslands Soil	MAFPHPKSRKDHYRKEDKPNSGGVVWNFFKRTINVTDYRNANDDVNPAKNRTFGGIIHLIHLLPHRMH*
Ga0063356_1027122012	3300004463	Arabidopsis Thaliana Rhizosphere	MAFPHPQSSKHKYWKEDKPNSGGVIWNFRKRTINITGDRNGKDDVSPAKNRTFGGTVHRLSPYQ*
Ga0066688_107602491	3300005178	Soil	DANDGEEYACVHPKSRKNKYRNRDKPNNGGVTWKFFKRTINVTDYRNSKDEVNPAKDRTFGGIIHSSQLLPYQMHR*
Ga0066676_100268473	3300005186	Soil	MAFPHPQSRKDNRRKGDIPNHGGVIWKFFKRTINITDYRNRKNDVNRAKNRTFGGIFHGLVSKCIVISL*
Ga0065704_106955882	3300005289	Switchgrass Rhizosphere	MTFPHPQSRNDKYRNGDKPDHGGVVWKFFKRTINITDNRNAKDEVNQARNPT
Ga0065704_107040752	3300005289	Switchgrass Rhizosphere	MAFPHPKSRKDNYRNGHIPNNGGVVRKFFKRTINVTDYRNPEDDVNPAK
Ga0066388_1000234366	3300005332	Tropical Forest Soil	MAFPHPKSRKDDYGNGNKPNNGGVVWKFFKRTVNITDYRNAKEDVNPAKNRTFGRLIHDWFVNVFIDPTRLD*
Ga0070705_1009714991	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MAFPHPKSRKEYYRNDDKPNTGGVLWNLFKRTIDIAEYRNAKDNVNPTNNRTFGGFFH
Ga0070705_1015893781	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MAFPHPKSRKDHYRNGDVPNNGGVVWKFFKRTINITDYGNAKDDVNPAKNRTFGRIIHDWFVNLSIGGTKC*
Ga0070700_1000669581	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MAFPHPQSRKDNDRKGDIPNHGGVIGKFFERTVNITEDRNAKDDVNPAKNRTF
Ga0070678_1014771482	3300005456	Miscanthus Rhizosphere	MTLPHPESRKDKYWNGDKPDNRGVVRKLFKRTIDITGDRNGKDDVNPAKN
Ga0070706_1006657912	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MAFPHPKSRKDHYRNGDVPNNGGVVWKFFKRTINITDYGNAKDDVNPAKNRTFGGI
Ga0070699_1015921832	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MAFPHPQSRKDHYRKEDKPGCGGIVWKFFKRTINITEYRNAKDDVNPAKNRTFGGITDHLIPFH*
Ga0070697_1004653801	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAFPHPKSRKDHYRNGDVPNNGGVVWKFFKRTINITDYGNAKDDVNPAKNRTFGGIIHDWFVNLSIGGTKC*
Ga0070697_1004967891	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAFPHPKSRKDHYRNDDKPNPVGVLWNFFKRTINITEYRNAKDDVNPAKNRTF
Ga0070696_1005350752	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	KSSKDMAFPHPQSREDKYRNGDKPNHGGVIWKILKRTINITGYRNAKDEVNQARNPTFGGITHHLIPFH*
Ga0070696_1013398112	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MAFPHPKSRKDHYRKEDKPNSGGVLWYFFKRTINITDYRNANDDVNPANNRTFGGFFHDWFVNLFYGESQCQFFEISKAEPI
Ga0066702_109277362	3300005575	Soil	MAFPHPKSRNGKYRNEDKPGCGGIAGKFFKRTINVAEYGNGKEDVNPAKN*
Ga0070761_101140033	3300005591	Soil	MAFPHPKSREDKRRDEDKPSNVGVVWNLVKRTINITEYRNAKDDVNPAK
Ga0066903_1009937094	3300005764	Tropical Forest Soil	MAFPHPKSRKDKYRNGDKPNDGGVVWKFVKRTINITDYRNAKDDVNPAKNRTFGSIIHD*
Ga0066903_1015384512	3300005764	Tropical Forest Soil	MLDRSFGDESSKDMAFPHPKSRKDHYRNGDVPNNGGVIWKFFKRTVNITDYWNAKDDVNPAKNRTFGGFSHDWFVNAFVDGTKRSLAIVNK*
Ga0070765_1011035072	3300006176	Soil	MAFPHPESRKEHYRHDDKPNTVGVLWKFFERTINITEYRNAKDDVNPA
Ga0097621_1004900941	3300006237	Miscanthus Rhizosphere	MAFPHPKSRKEYYRNDDKPNTGGVLWNLFKRTIDIAEYRNAKDNVNPTNNRTFGGFFHD*
Ga0075424_1017304902	3300006904	Populus Rhizosphere	MSFPHPQSRKDNYRKGDIPNNGSVVWKLFKGTINVTDDRDAEYNVNRTKNRAFGGV
Ga0105245_127769601	3300009098	Miscanthus Rhizosphere	MAFPHPKSRKHNYRKGDKPNNRGVVWKLFKGTINVTDYRNGEDDVNPATNRTFRGVSHSIPFHREFAAN
Ga0099792_108248931	3300009143	Vadose Zone Soil	MAFPHPQSRKDNYRKGDKPNNGGVVWKVFKGTINVTDYRNGEDDVNRAENRTFGGVSHSIPFHREFAAHTFQ
Ga0105242_122845862	3300009176	Miscanthus Rhizosphere	MAFPHPKSRKRNYRKGDKPNNGSVVWELFKRTINVTDYRNGEDDVNPA
Ga0105249_105116911	3300009553	Switchgrass Rhizosphere	MAFPHPKSRKRNYRKGDKPNNRSVVGKLFKGTINVTDYRNGEDEVNPANNRTF
Ga0137363_105909812	3300012202	Vadose Zone Soil	MAFPHPKPRKEHYGHDDKPNTGGVHWNYFKRTINITDYRNAEDDVNPSNNRTFGGLFHD*
Ga0137380_107788462	3300012206	Vadose Zone Soil	MTFPHPESRKDHYRKEDKPNSGGILWNFFKRTINITDYRNANDDVNPAKNRTFGGIIHLIHLL
Ga0137379_103618342	3300012209	Vadose Zone Soil	MAFPHPKSRKEHYRNGDVPNNGGVVWKFFKRAINIADYRNAKDDVNPAKNRTFGGIIHDRFVNLFTGGTKC*
Ga0137379_115804242	3300012209	Vadose Zone Soil	MTIPHPKSRKDHYRNGDVPNNGSVVWKFFKRTINITDYRNAKDDVNPAKNRTLGDIIHDRFVNLFIGGTKC*
Ga0137377_110695891	3300012211	Vadose Zone Soil	MAVPHPKSRKDNYRKEDKPNSGGVVWKFFKRTINVTEYRNAKDNVNPAQSRTFGGIIHNWFVNLNT*
Ga0137371_114379461	3300012356	Vadose Zone Soil	KGNYRKGDKPNNGGVVWKLFKGTINVTDYRNAEDDVN*
Ga0137397_106980023	3300012685	Vadose Zone Soil	MAFPHPQSRKDHYRKEDKPSCGGIVRKFFKRTIDITDYRNAEDEVNRATNRTLGGIFHD
Ga0137359_101640402	3300012923	Vadose Zone Soil	MAFPHPKSRKDNYRKEDKPNSGGVVWKFFKRTINVTEYRNAKDNVNPAQSRTFGGIIHNWFVNLNT*
Ga0137413_115076391	3300012924	Vadose Zone Soil	MAFPHPKSRKHNYRKGDKPNNGGVVWKLFKGTINVTDYRDAEDDVNRA
Ga0137419_110988941	3300012925	Vadose Zone Soil	MAFPHPQSQEDNYRKEDKPSSGGVVWKSFKRTIDITDYWNAKEDVKPSNNRTLDALVHD
Ga0137419_119222071	3300012925	Vadose Zone Soil	MAFPHPKSRKDNYRNKDKPNSGGVVWNFFKRTINITEYRNAKDDVNPAKNRTLGGIFHDY
Ga0137404_116140981	3300012929	Vadose Zone Soil	MAFPHPQSRNDHDGKEDKPGCGGIVWKFFKRTINIPEYRNGKNDVNPAKNRACDAWVHDV
Ga0137404_118751201	3300012929	Vadose Zone Soil	MAFPHPKSRKDNHRKKDKPNNGRVLWNFFKRTINITENRNAEDDVNPSKNRTFGVVTDHLIPFH
Ga0137407_121117942	3300012930	Vadose Zone Soil	MAFPHPQSRKDHDRKEDKPSRRGVLRKFVKRTVNVTVYWNGNDDVNPANDRTFGGILHLIPRFMTLDFEP
Ga0126369_126430092	3300012971	Tropical Forest Soil	MAFPHPKSGKGHYRKEDKPDSGGVIWYFFKRTIDIADNRNANDDVNPAKNRTFGGFFHDWSSSIHDF*
Ga0126369_132210122	3300012971	Tropical Forest Soil	MSFPHPQPRKDNYRKGDISNNGGVVWKLFERTVNVTDYRNAKDDVNRAENRTFLSISHSIPFLLEFAARIFQPG
Ga0164309_110961811	3300012984	Soil	MAFPHPKSRKHNYRKGDKPNNRGVVWKLLKGTINVTDYRNGEDDVNPAT
Ga0163162_126150631	3300013306	Switchgrass Rhizosphere	MAFPHPKSRKRNYRKGDKPNNRGVVWKLFKGTINVTDYRNGEDDVNPATNRTFR
Ga0157372_130889171	3300013307	Corn Rhizosphere	MAFPHPQSRKDNDRKEDKPNSGGVLWNFFKWTVNIAEYRNATDKVNPASNRTLGALVHDFVMYEF
Ga0137409_106421401	3300015245	Vadose Zone Soil	MAFPHPKSRKDNCRKEDKPNSGGIVWNFFKRTINITEYRNAKDNVNTAKNRT
Ga0132258_130998253	3300015371	Arabidopsis Rhizosphere	MDLTRFRDKSSNEMAFPHPQSRKRDYGKGDKPNNGGVVWKLFKGTINVTDYRNGEDEVNPANNRTFGGISHSIPFHR
Ga0132255_1013339593	3300015374	Arabidopsis Rhizosphere	MHLASFRDKSSNEMAFPHPQSRKRDYGKGDKPNNGGVVWKLFKGTINVTDYRNGEDEVNPANNRTFGGISHSIPFHR
Ga0132255_1028714651	3300015374	Arabidopsis Rhizosphere	MAFPHPQPRKDHHWKGNIPNNWGVVWKFFKGTINVTDYRNPEDDVNPAKNRTFDGISHSIPFHREF
Ga0132255_1062405941	3300015374	Arabidopsis Rhizosphere	MALPHPKSRKDHYRKEDKPNSRSVLWEVFKGTINITGYRNAKDNVNPAKNR
Ga0182035_114870302	3300016341	Soil	MAFPHPQSREEKYGKEDKPNSGGVMWNFVKWTVNIPDYRNAKNDVNPAKNRTFDGLVHDDLSFL
Ga0182039_105501421	3300016422	Soil	MAFPHPKSRKEHYRNDDKPNTGGVLRNLFKWTINITEYRNAKDDVNPAKNRTLGGF
Ga0187825_103610221	3300017930	Freshwater Sediment	MAFPHPKSGKDNDRDRDKPNHGGVIRKFLERTINITSYRNAKEDVDRAKNRTFGGIIHDWFLNLFIGRTP
Ga0187847_105698471	3300017948	Peatland	MAFPHPKSRNHHYRKKDKPNDGGVFRKFFKRTINIAEYGNAKDDVNPAKNRT
Ga0184635_101863141	3300018072	Groundwater Sediment	MAFPHPKSRKRNYWNGDISNNGSVVWKFLKRTINITDYRNGEDEVNAAKDGTL
Ga0187770_107665912	3300018090	Tropical Peatland	MAFPQPKSRKDKCRNEHKPSSGGVVRNLVERTINVAHDRNAKDDVDPAKNR
Ga0190265_117249742	3300018422	Soil	MALPHPKSRKDHYRKKDKPDSRCVLWYFFKRTIDVTDYRNANDDVNPANNRTFVGFFHDWFVNLFYGESQCQFLKLQVCP
Ga0190273_114593622	3300018920	Soil	MPFPHPKSRKDHCREKDKPNSGGVIWNFFKRTIYITDYRNGKDDVNPAKNRTFGGFLHLIYLLPIIDVNGERYVRLN
Ga0193723_10667482	3300019879	Soil	MALPHPQSRKDHYRNGDIPNNGSVVWKFFKRTINIAGYRNAKDDVNPAKNRTFGGIIHDRFVNLFFDGTKCRLAILNKRQFL
Ga0193727_10235633	3300019886	Soil	MAFPHPQSRKDNYRKGDKPNNRGVVWKLFKGTINVTGYRNAEDDVN
Ga0193693_10151093	3300019996	Soil	MAFPHPKSRKHNYRKGDKPNNRSVVWKLLKGTINVTDYRNGEDDVNPATDRTFRGVSHSIPFHREFAANIFQPLLHGF
Ga0210407_100577954	3300020579	Soil	MAFPHPQSRKDHYREEDKPSWRRVVRKFFKRTINITEYRNAKDDVNAAENRTLGGFLHDLYYLLSIQDF
Ga0210407_102363023	3300020579	Soil	MAFPHPQSRKDHDWKDDKPCCGGVVWNFFKRTINITEYRNRKDDVNPANHRTFGGILHLIPRFMTLEPP
Ga0210407_108321781	3300020579	Soil	MAFPHPKTRKDHCWHEDKPSRVGVLWNSVKRTVNVTEYRNAKEDVNPAK
Ga0210387_100887685	3300021405	Soil	MAFPHPKTRKDHCWHEDKPSRVGVLWNSVKRTVNVTEYRNAKDDVNPAKNRTLLRDL
Ga0210386_106519992	3300021406	Soil	MAFPHPKSGEDHSRNDDEPNPGGVVWKSFERTIDIAEYRNGKDDVNPANNRTFGGIFH
Ga0210383_104967042	3300021407	Soil	MAFPHPQSRNGHYGKKDKPSSGGVGGKFFKRTIDITEYRNANDDVNPAKYRTCDASVHDVGC
Ga0210398_104819652	3300021477	Soil	MALPHPQSRKEHQRNDDKPNTGGVCWQLFERTINITEYRNAEDDVNTANNRADGGIFHDHFLGS
Ga0207684_103857282	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MAFPHPKSRKDHYRNGDVPNNGGVVWKFFKRTINITDYGNAKDDVNPAKNRTFGGIIHDWFVNLSIGGTKC
Ga0207657_107134141	3300025919	Corn Rhizosphere	MAFPHPKSRKRNYRKGDKPNNGSVVWKFFKGTINVTDYRNGEDNVNPATNRTFLGVSHSI
Ga0207665_100267213	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MAFPHPQSRKDHYRNKDKPSSGGVVWNFVKRTINIAEYRNTKDEVNPANNRTFGGIFHD
Ga0207658_117932481	3300025986	Switchgrass Rhizosphere	MAFPHPKSCKRNYWNRDISNNWSVVGKFLKRTINITDYRNGEDEVNPSKDG
Ga0207708_104486521	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MAFPHPQSRKDNDRKGDIPNHGGVIGKFFERTVNITEDRNAKDDVNPAKNRTFGGIIH
Ga0209056_101540583	3300026538	Soil	MAFPHPQSRKDHYRKEDKPSCGGIVWKSFKRTIDITKYRNAKDDVNPAKNRTFGGIFHD
Ga0208709_1018482	3300026693	Soil	MAFPHPKSRKDNYRNGDKPNNGGVIWNFFKRTINITEYRNAKEDVDRAKNRTFGGIFHDWLLTPFVTRSG
Ga0209214_10023462	3300027071	Forest Soil	MALPHPQSRQDNYRKRDKPNNRSVVRKLFERTINVTDYWNAEDEVKPAKNRTFGGISHSILFH
Ga0207468_10067341	3300027444	Soil	MAFPHPKSRKGNNRNGHIPNNRGVVWKVFKRTINVTDYRNSKDKMNPAKDRSFHDVLII
Ga0209218_10524953	3300027505	Forest Soil	MAFPHQQSRKDHEREEDIPRRRGVLWKLFKRTVDISVYRNSDDDVNPAKNRTWVHDVPIL
Ga0209283_101308633	3300027875	Vadose Zone Soil	MAFPHPKSRKEHYRNDDKPNTGGVLWNFFKRTINITEYRNAKDDVNRAKNRTFGGIFHDYFVLHLS
Ga0209624_106516762	3300027895	Forest Soil	MAFPHPKTRKDHCWHEDKPSRVGVLWNSVKRTVNVTEYRNAKDDVNPAKNRTLLG
Ga0302219_101444623	3300028747	Palsa	MAFPHPKSRKEHYRNDYKPNTGGVLWNFFKRTINITEYRNAKDDVNPANNR
Ga0302225_102137222	3300028780	Palsa	MAFPHPKSRKEHYRNDDKPNAGGVLWNFFKRTINITEYWNAKDDVNTANNRTFG
Ga0307277_105334822	3300028881	Soil	MAFPHPKSRKHNYRKGDKPNNRGVVRKLLKGTINVTDYRNGEDDVNPATNRTFRGVSHSIPFHREF
Ga0308309_101823954	3300028906	Soil	MAFPHPKTRKDHCWHEDKPSRVGVLWNSVKRTVNVTEYRNAKDDVNPAKNRTLLGDLCF
Ga0170824_1010785102	3300031231	Forest Soil	MAFPHPQSRKDNYRKGDIPNNGAVVWKLFNGAINVTDYRNAEDDVGSSEKSNVW
Ga0170824_1032069931	3300031231	Forest Soil	MTFPHPKSRKDNRRKGDIPNHGGVIWKFFKRTINITDYRNRKDDMNAAKNRTFGGIFH
Ga0170824_1143908261	3300031231	Forest Soil	VTFPHPESRKDKRGKEDKPNSGGVLWNFLKRAINITDYGDAQDEVNPAKDRTFGEIIHDWFVALFVGGTASFGLVDEAAETA
Ga0170824_1220827151	3300031231	Forest Soil	VAFPHPESRKDKCGQEDKPNPKGVLWDFFKRTINIAEYRDAQDEVNAAKNRTFG
Ga0170818_1080717252	3300031474	Forest Soil	MAFPHPKSRKDNRRKGDIPNHGGVIWKFSKRTIDITDYRNGEDDVNRAKNRTFGGVIHDWLVNLFIDDTKRRLAILK
Ga0318541_105084792	3300031545	Soil	MAFPHPKCRKKHYRNNGKPNTGGVLWSFFNQTINMAEYRNAKNDVSPAYN
Ga0310886_111560512	3300031562	Soil	KSRKGKYRKENKPNSGGVIWNFFKRTINIADDRNAKDDVNPSKNRAFGSFIHGRFVNPFIGEAASLRSDLGVQVF
Ga0307468_1006953863	3300031740	Hardwood Forest Soil	MALPHPQSRQDKGRNGDKPNHRSVVWKFFKRTINVTGYRNAKDEVNQARNPTFGGDTHHL
Ga0307468_1008921922	3300031740	Hardwood Forest Soil	MAFPHPQSRKDHYRKEDKPSCGGIVWKFFKRTINIAEYRNAKDDVNPAKNPTFAALVHDAPRFMTLEPP
Ga0307477_101310382	3300031753	Hardwood Forest Soil	MAFPHPQSQKDKYWDEDKPSSGGTVWNLVKRTIDVTNYRNGKDEVNPEKNRTFGGIFHD
Ga0306925_100818072	3300031890	Soil	MAFPHPKCRKKHYRNNGKPNTGGVLWSFFNQTINMAEYRNAKNDVSPAYNRTVGVVFHD
Ga0307406_106851782	3300031901	Rhizosphere	MAFPHPKSRNHKYRNCDEPNNRGVVWKFFNGTINISDYRDRKDEV
Ga0310916_114618181	3300031942	Soil	MAFPHPQSRKEEYRNEDKPNRGGVIWNFFKRTINITEYRNAKDDANPANNRTFAGTTDH
Ga0307479_117536501	3300031962	Hardwood Forest Soil	MAFPHPKSRKDHYGNEEEPSRPGVVWNLFKRTINITEYRNAKDDVNRAKNPTFCALAH
Ga0311301_118866061	3300032160	Peatlands Soil	MAFPHPKSRKEHYRNDDKPNTGGVLWNFFKRTINITEYRNAKDDVNPANNRTFCGIFHDS
Ga0335075_109526341	3300032896	Soil	MAFPHPKSRKDNDREGDIPNNGRIIWQFLKWTINIADYRNAEDNVNPAKDRTFEGFIHDWLVNLFISGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F095781

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences