NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095780

Metagenome / Metatranscriptome Family F095780

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095780
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 68 residues
Representative Sequence MLVGVDVDELQHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLTAAALIEDCERITRYHTAI
Number of Associated Samples 93
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 30.00 %
% of genes near scaffold ends (potentially truncated) 9.52 %
% of genes from short scaffolds (< 2000 bps) 9.52 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (92.381 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(31.429 % of family members)
Environment Ontology (ENVO) Unclassified
(39.048 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(56.190 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 62.11%    β-sheet: 0.00%    Coil/Unstructured: 37.89%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF00230MIP 28.57
PF07992Pyr_redox_2 8.57
PF03551PadR 3.81
PF01522Polysacc_deac_1 3.81
PF12697Abhydrolase_6 2.86
PF01946Thi4 1.90
PF00361Proton_antipo_M 0.95
PF12704MacB_PCD 0.95
PF13508Acetyltransf_7 0.95
PF13424TPR_12 0.95
PF02796HTH_7 0.95
PF01028Topoisom_I 0.95
PF13673Acetyltransf_10 0.95
PF02665Nitrate_red_gam 0.95
PF01638HxlR 0.95
PF13005zf-IS66 0.95
PF00005ABC_tran 0.95
PF02630SCO1-SenC 0.95
PF13280WYL 0.95
PF00805Pentapeptide 0.95
PF00583Acetyltransf_1 0.95
PF04471Mrr_cat 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG0580Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)Carbohydrate transport and metabolism [G] 28.57
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 4.76
COG0726Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 familyCell wall/membrane/envelope biogenesis [M] 3.81
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 3.81
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 3.81
COG1635Thiazole synthase/Archaeal ribulose 1,5-bisphosphate synthetaseCarbohydrate transport and metabolism [G] 1.90
COG1225PeroxiredoxinPosttranslational modification, protein turnover, chaperones [O] 0.95
COG1357Uncharacterized conserved protein YjbI, contains pentapeptide repeatsFunction unknown [S] 0.95
COG1999Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC familyPosttranslational modification, protein turnover, chaperones [O] 0.95
COG2181Nitrate reductase gamma subunitEnergy production and conversion [C] 0.95
COG3569DNA topoisomerase IBReplication, recombination and repair [L] 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A92.38 %
All OrganismsrootAll Organisms7.62 %

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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005543|Ga0070672_102108039All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia508Open in IMG/M
3300005591|Ga0070761_10407658All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia830Open in IMG/M
3300010361|Ga0126378_12507141Not Available589Open in IMG/M
3300021401|Ga0210393_10978040All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia685Open in IMG/M
3300030524|Ga0311357_11830316All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241504Open in IMG/M
3300030706|Ga0310039_10075778All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1440Open in IMG/M
3300031680|Ga0318574_10734236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia579Open in IMG/M
3300031771|Ga0318546_10710818All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia707Open in IMG/M
3300031792|Ga0318529_10087154All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1396Open in IMG/M
3300031799|Ga0318565_10327520Not Available744Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil31.43%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil11.43%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere11.43%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.67%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.71%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.76%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.86%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.86%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.86%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.90%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.90%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.90%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.95%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.95%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.95%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.95%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.95%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.95%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.95%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.95%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.95%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.95%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.95%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010867Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017926Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017937Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4EnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300020082Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022521Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24EnvironmentalOpen in IMG/M
3300022522Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026374Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-AEnvironmentalOpen in IMG/M
3300027106Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF031 (SPAdes)EnvironmentalOpen in IMG/M
3300027119Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027330Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)EnvironmentalOpen in IMG/M
3300027545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027652Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027737Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030524II_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030706Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)EnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031469Fir Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031832Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25EnvironmentalOpen in IMG/M
3300031894Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032043Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ51221_1007339013300003505Forest SoilMLSSVDVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLED
JGIcombinedJ51221_1042725013300003505Forest SoilMDVDDLQHALGGVVLESAYLERVLRAAFSALIDSKYAAVVDSRLTAATMIEDCERITRHHTDIPAAEKDRLL
Ga0062385_1104436013300004080Bog Forest SoilMLSSVDVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLEDCERITQYH
Ga0062387_10075901013300004091Bog Forest SoilMLSSVDVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLEDCERITQY
Ga0066388_10685526223300005332Tropical Forest SoilMLIDVDVDELQHALGGVVLEAAYLERVLRAAFGALVGSKYAAVVDGRLMTKVLIEDCQRIAEIHSSIVEPQRAAL
Ga0070703_1049011113300005406Corn, Switchgrass And Miscanthus RhizosphereMLCRVDVDELRHALGGVVLGSAYLERTLRAAFSALVGSKYAAVVDGRLTASALIEDCERLTRYH
Ga0070714_10048168833300005435Agricultural SoilMDVDDLQHALGGVVLESAYLERVLRAAFSALIDSKYAAVVDSRLTAATMIEDCERITR
Ga0070713_10162861223300005436Corn, Switchgrass And Miscanthus RhizosphereVDVDELQHALGGVVLEAAYLERVLRTAFSALVGSKYAAVVDGRLTAAALIEDCERITRYHTAIT
Ga0070713_10234375213300005436Corn, Switchgrass And Miscanthus RhizosphereVDDLQHALGGVVLESAYLERVLRAAFSALIDSKYAAVVDSRLTAATMIEDCERITR
Ga0070710_1057947513300005437Corn, Switchgrass And Miscanthus RhizosphereMLVGVNVDELQHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLTAAALIEDCERITRYHTA
Ga0070711_10085428113300005439Corn, Switchgrass And Miscanthus RhizosphereMLVGVDVDELQHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLTAAALIEDCERITRYHTAI
Ga0070698_10011494033300005471Corn, Switchgrass And Miscanthus RhizosphereMLCRVDVDELRHALGGVVLGSAYLERTLRAAFSALVGSKYAAVVDGRLTASALIEDCERLTRYHTGILA
Ga0070672_10210803913300005543Miscanthus RhizosphereVDVDELQHALGGVVLESAYLERVLRLSFSALVGSKYAAVVDGRLMASALIADCEQLTKYHTDLPPAAKQDLLAALRAC
Ga0066661_1019435523300005554SoilMLVGVDVDELQHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLTAAALIEDCERITRYHTAITRPAKEE
Ga0070761_1040765813300005591SoilMLTGVDVDELQHALGGIVLEAAYMERVLRTAFSALIGSKYAAVIDGRLMAAALIEDCERITKYHADIPEPAKEALLAALR
Ga0070762_1087967413300005602SoilMITGVDVDELQHALGGIVLEAAYMERVLRAVFSALVGSKYAAVVDGRLTASALIEDCERLAGYHTEIPAHA
Ga0070763_1013336823300005610SoilMLSSVDVDELRHALGGVVLEAAYLERTLRTAFSALVASKYAAVVDGRLTAAALLEDCERITQYHTGLTKPAK
Ga0070763_1081650923300005610SoilMLSSVNVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLEDCERI
Ga0070764_1017496313300005712SoilMITGVDVDELQHALGGIVLEAAYMERVLRAVFSALVGSKYAAVVDGRLTASALIEDCERLAGYHTEIP
Ga0070764_1026716813300005712SoilMLSSVDVDELRHALGSVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLEDCE
Ga0066903_10336909423300005764Tropical Forest SoilVRGAEWVDVDDLQHALGGVVLESAYLERTLRAAFSALIGSKYAAAVDGRLTAATLIEDCGRLARYH
Ga0070766_1091364113300005921SoilMLSSVDVDELRHALGSVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLE
Ga0070766_1099160123300005921SoilMLSSVDVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLEDCERI
Ga0070766_1103820913300005921SoilMLSSVDVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLE
Ga0070717_1177739113300006028Corn, Switchgrass And Miscanthus RhizosphereMLGDMDVDELQHALGAIVLESAYLERVLRAAFSALVGSKYAAVIDGRWSAFALIEDCEQIVKH
Ga0070717_1209149513300006028Corn, Switchgrass And Miscanthus RhizosphereMDVDELQHALGGVVLESAFLERVLRAAFSALIDSKYAAVVDSRLTAATMIEDCERITR
Ga0070717_1215982713300006028Corn, Switchgrass And Miscanthus RhizosphereLRHARGVDVDELQHALGGVVLEAAYLERVLRTAFSALVGSKYAAVVDGRLTAAALIEDCERITRYHTAITRPAKEE
Ga0070765_10117582923300006176SoilMLSSVDVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLEDCERITQ
Ga0105247_1116012913300009101Switchgrass RhizosphereGCAMLVGVDVDVDELQHALGGVVLEAGYLERVLRAAFSALVGSKYAAVVDGRLTAAALIEDCERITRYHTAIARPA*
Ga0105237_1121220023300009545Corn RhizosphereVDVDELQHALGGVVLESAYLERVLRLSFSALVGSKYAAVVDGRLMASALIADCEQLTKYH
Ga0126380_1120191913300010043Tropical Forest SoilVDVDELQHALGGVVLESAYLERVLRSSFSALVGSKYAAVVDGRLMASALIADCEQLTKYHTDLPPA
Ga0126373_1086571533300010048Tropical Forest SoilMDVDELQHALGGVVLESAYLERVLRAAFSALIDSKYGALVDSRLTAAHMIEDCERITHHRTDIPG
Ga0099796_1045278723300010159Vadose Zone SoilMLVGVDVDELQHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLTAAALIEDCERITRYHTAMT
Ga0126372_1304898923300010360Tropical Forest SoilMLVVVDVDELQHALGGIVLEAAYLERVLRTAFSALVGSKYAAVVDGRLTAAALIEDCERITRYHT
Ga0126378_1250714113300010361Tropical Forest SoilLLIWHTKCAQRRVAAMLGDMDVDELQRALGAIVVEAAYLERILRAAFSALVDSKYAAVIDGRWSAYALIEDCEQIVKHHTGIPELAKQKLLA
Ga0126379_1072455813300010366Tropical Forest SoilVDVDELQHALGGVVLESAYLERVLRSSFSALVGSKYAAVVDGRLMASALIADCEQLTKYHTDL
Ga0126381_10467105613300010376Tropical Forest SoilMLMDVDVDELQHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLTAATLIEDCERITRYHTGITE
Ga0126347_118507613300010867Boreal Forest SoilMIAGVDVDELQHALGGIVVEAAYMERVLRAVFSALVGSKYAAVVSGRLLASALIEDCERI
Ga0182024_1170236613300014501PermafrostMLSAMDVDELQHALGAIVLEAAYLERVLRAAFSALIGSKYAAVIDGRLMTATLIEDCEQIARHHTDIPA
Ga0182041_1006788643300016294SoilMLTSVDVDELRHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCERI
Ga0182034_1096819623300016371SoilMLTSVDVDELRHALGGVVLEAAYLERILRAAFSALVGSKYAAVVDGRLMAAALIEDCERITKYHTGI
Ga0182038_1163310213300016445SoilVDVDELRHALGSVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLTAAALIEDCERMTGYHTGLTESVRDALL
Ga0187802_1036289513300017822Freshwater SedimentMLTSVDVDELRHALGGVVLEVAYLERILRSAFSALVGSKYAAVVDGRLMAAAL
Ga0187807_114283813300017926Freshwater SedimentMDVDELQHALGGVVLESAYLERVLRAAFSALVGSKYAAVVDARLTVAALIEDCERITRHHTAIPDPE
Ga0187814_1022235623300017932Freshwater SedimentMLTSVDVDELRHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCERITRYHTGITGPAKETVLA
Ga0187809_1001556813300017937Freshwater SedimentMLTSVDVDELRHALGGVVLEAAYLERILRAAFSALVGSKYAAVVDGRLMAAALIED
Ga0187804_1034625633300018006Freshwater SedimentMLTSVDVDDLRHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCEQITRYHTG
Ga0187766_1089620433300018058Tropical PeatlandMLTSVDVDELRHALGSVILEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCERITRYHTGITG
Ga0187765_1073137023300018060Tropical PeatlandMLTSVDVDELRHALGSVVLEAAYLERILRAAFSALVGSKYAAVVDGRLMAAALIEDCERLTRYHTGL
Ga0206353_1074442123300020082Corn, Switchgrass And Miscanthus RhizosphereMDVDELRHALGGVVLEAAYLERVLRAAFSALVGSKYAALVDAHLTVAALIEDCERIARQHADISGSER
Ga0210407_1014756113300020579SoilMDVDDLQHALGGVVLESAYLERVLRAAFSALIDSKYAAVVDSRLTAAAMIEDCEHIT
Ga0210395_1070123823300020582SoilMLKSVDVDELRHALGGVVLEAAYLERMLRAAFSALVGSKYAAVVDGRLTASALIEDCERITRYHTGIP
Ga0210395_1115760313300020582SoilMDDLDELRHALGAVVLEAAYLERVLRAAFSALVGSKYAVLVHARLTVTALIEDCERI
Ga0210393_1097804013300021401SoilMLSSVDVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLDDCERITRYHTGLTEAAKETLLTALRACRQA
Ga0210397_1002460853300021403SoilMDVDDLQHALGGVVLESAYLERVLRAAFSALIDSKYAAVVDSRLTAATMIEDCERITRHHTDIPGAE
Ga0210387_1036305023300021405SoilVDVDELQHALGGVVLEAAYLERVLRTAFSALVGSKYAAVVDGRLTAAALIEDCERITRYHTAITRPAKEELGT
Ga0210383_1122946823300021407SoilMDVDELQHALGSVVLESAFLERVLRATFSALIDSKYAAVVDSRLTAATMIEDCERITRHR
Ga0210383_1125309013300021407SoilMSTDMDVDDLQHALGGVVLESAYLERVLRAAFSALIDSKYAAVVDSRLTAATMIEDCERITRHHTDIPAAEKEWLL
Ga0210394_1175223013300021420SoilMSTDMDVDDLQHALGGVVLESAYLERVLRAAFSALIDSKYAAVVDSRLTAAAMIEDCEHITRQHTDIPVAEKERLLAALK
Ga0210384_1174412213300021432SoilVDELQHALGGIVLEAAYLERVLRTAFSALVGSKYAAVVDGRLTAAALIEDCERITRYHTAITQEAKEGI
Ga0210390_1050383413300021474SoilMLSSVDVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLEDCERITQYHTGLTKA
Ga0210398_1050322413300021477SoilMLSSVDVDELRHALGGVVLEAAYLERTLRTAFSALVSSKYAAVVDGRLTAAALLEDCER
Ga0210402_1119164323300021478SoilMLSCVDVEELQRALGSVVLESAYLERTLRAAFSALVGSKYAAVVDGRLTAAALIEDCGQL
Ga0210402_1152097723300021478SoilMDVDELQHALGGVVLESAFLERVLRAAFSALIDSKYAAVVDSRLTAAAMIEDCERITRHRTDIPGA
Ga0210410_1082729713300021479SoilMDVDDLQHALGGVVLESAYLERVLRAAFSALIDSKYAAVVDSRLTAATMIEDCERITRHHTD
Ga0224541_102406523300022521SoilMLFTVDMDELRYALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLEDCE
Ga0242659_103876123300022522SoilMLSSVDVDELRHALGSVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLDDCERITRYHTGLTEAAKETLLT
Ga0207692_1008463013300025898Corn, Switchgrass And Miscanthus RhizosphereMLVGVNVDELQHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLTAAALIEDCERITRY
Ga0207693_1066821123300025915Corn, Switchgrass And Miscanthus RhizosphereMLVGVDVDELQHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLTAAALIEDCERITRY
Ga0207660_1140718323300025917Corn RhizosphereVDVDELQHALGGVVLESAYLERVLRLSFSALVGSKYAAVVDGRLMASALIADCEQLTKYHTDLPPAAKQDLLAAL
Ga0207700_1128860223300025928Corn, Switchgrass And Miscanthus RhizosphereMDVDELQHALGGVVLEAAYLERVLRAAFSALVGSKYAALVDAHLTVAALIEDCERIARQHADIS
Ga0207664_1040816713300025929Agricultural SoilMEVDELRHALGGVVLEAAYLERVLRAAFSALVGSKYAALVDAHLTVAALIEDCERIVRNHTGIP
Ga0257146_107067313300026374SoilMLVGVDVDVDELQHALGGVVLEAAYMERVLRTAFSALVGSKYAAVVDGRLTAAALIEDCERITRYHTAVTQA
Ga0208607_10309313300027106Forest SoilMLSSVDVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLDDCERITR
Ga0209522_103934713300027119Forest SoilMLVDVDVDELQHALGGIVLEAAYMERVLRTAFSALVGSKYAAVVDGRLTAAALIEDC
Ga0207777_104256813300027330Tropical Forest SoilMLTSVDVDELRHALGSVILEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCERITRYHTG
Ga0209008_102843123300027545Forest SoilMLSSVNVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLEDCERITRYHTGLTEAAK
Ga0209007_118292923300027652Forest SoilMLTTVNADELRHALGGVVLEAAYLERILRAAFSALVGSKYAAVVDGRLTASSLIEDCERITRYHTGIAEPAKETLLAALA
Ga0209038_1024597023300027737Bog Forest SoilMLTTVNADELRHALGGVVLEAAYLERILRAAFSALVGSKYAAVVDGRLTASSLIEDCERITRYHTGMAEPAK
Ga0209693_1004212233300027855SoilMIAGVDADELQHALGGVVLEAAYMERVLRGAFSALVGTKYAAVASGRLVASALIEDCERITSYHTEIPTPAK
Ga0209693_1057117723300027855SoilMLTSVDVDELRHALGGVVLEAAYLERILRAAFSALVGSKYAAAVDGRLTAAALIED
Ga0209624_1022362513300027895Forest SoilMLSSVNVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLEDCERITRYHT
Ga0302177_1028363513300030053PalsaMLRSVDIDDLQHALGGVVLEAAYLERVLRTAFSALVGSKYAAVVDGRLTAAALIEDCERITRYRTDIPAPAKEA
Ga0311372_1065345813300030520PalsaMLSGMDVDELQHALGGIVLEAAYLERVLRAAFSALVGSKYAAVIDGRLMTATLLEDCEQIARHHTDIPAAAKATLLAA
Ga0311357_1183031613300030524PalsaMLFTVDIDELRYALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLEDCERLTQYHTGITGPAKAASAEASAEASAE
Ga0310039_1007577813300030706Peatlands SoilMLTSVDVNDLRHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCEQITRYHTGIAEPAKDTLLAALRA
Ga0307482_107994523300030730Hardwood Forest SoilMLSIVDVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLEDCERI
Ga0170819_1656614713300031469Forest SoilMLAGMDASDLQRAIGGVVLESAYLERVLKTAFRALIGSKYAAVLDSRLMASALIEDCRRVAEVHSGI
Ga0318516_1007205553300031543SoilMLTSVDVDELRHALGGVVLEAAYLERILRAAFSALVGSKYAAVVDGRLAAAALIEDCERITRYHTGIT
Ga0318574_1073423613300031680SoilMLTCVDVDELQHALGSVVLEAAYLERTLRTAFSALIGSKYAAVVDGRLNASALIEDCERLTKYHTGIPAPAKAAVLAALHA
Ga0307474_1042698623300031718Hardwood Forest SoilMLSSVDVDELRHALGGVVLEAAYLERTLRTAFSALVGSKYAAVVDGRLTAAALLEDCERITQYHTGLTKAAKEALL
Ga0318546_1071081823300031771SoilMLTCVDVDELQHALGSVVLEAAYLERTLRTAFSALIGSKYAAVVDGRLNASALIEDCERLTKYHTGIPAPAKAAVLAALHACH
Ga0318498_1024729823300031778SoilMLTSVDVDELRHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCERITRYHTGITGPAKEPLLAALRA
Ga0318529_1008715433300031792SoilMLIDVDVDELQHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLTAASLIEDCEQLTRYHTGISQPVKDVLLAALRACH
Ga0318548_1002846433300031793SoilMLTSVDVDELRHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCERITRYHTGITGPAKE
Ga0318557_1008131833300031795SoilMLTSVDVDELRHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCERITRYHTGITGSAKEALLAALQA
Ga0318576_1010571513300031796SoilMLTSVDVDELRHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCERITRYHTGITGP
Ga0318565_1032752013300031799SoilMLTSVDVDELRHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCEQITRYHTGITESAKEALLASLRACR
Ga0318499_1002439613300031832SoilMLTSVDVDELRHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCERITRYHTGITGPA
Ga0318522_1026110823300031894SoilMLTSVDVDELRHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCERITRYHTGITGPAK
Ga0310913_1086362813300031945SoilMLIDVDVDELQHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLTAAALIEDCE
Ga0318563_1052001123300032009SoilMLTSVDVDELRHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCEQITRYHTGITEPAKEA
Ga0318556_1040866423300032043SoilMLTSVDVDELRHALGGVVLEAAYLERILRAAFSALVGSKYAAVVDGRLMAAALIEDCERITRYH
Ga0318513_1006139013300032065SoilMLTSVDVDELRHALGGVVLEAAYLERVLRAAFSALVGSKYAAVVDGRLMAAALIEDCERITRYHTGITGSA
Ga0318519_1004912013300033290SoilMLTSVDVDELRHALGGVVLEAAYLERVLRTAFSALVGSKYAAVVDGRLMAAALIEDCERITRYHTGITA


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