Metagenome / Metatranscriptome Family F095763

Basic Information
Family ID	F095763
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	56 residues
Representative Sequence	MSTKITMALVAAVIACASPALAGGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Number of Associated Samples	95
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	80.77 %
% of genes near scaffold ends (potentially truncated)	19.05 %
% of genes from short scaffolds (< 2000 bps)	87.62 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (61.905 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.905 % of family members)
Environment Ontology (ENVO)	Unclassified (32.381 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.286 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 45.45% β-sheet: 0.00% Coil/Unstructured: 54.55%
Feature Viewer

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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01292	Ni_hydr_CYTB	11.43
PF13407	Peripla_BP_4	2.86
PF00033	Cytochrome_B	1.90
PF02530	Porin_2	1.90
PF13586	DDE_Tnp_1_2	0.95
PF03979	Sigma70_r1_1	0.95
PF04392	ABC_sub_bind	0.95
PF00149	Metallophos	0.95
PF00300	His_Phos_1	0.95
PF08281	Sigma70_r4_2	0.95
PF12681	Glyoxalase_2	0.95
PF01042	Ribonuc_L-PSP	0.95
PF03734	YkuD	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	11.43
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	11.43
COG3038	Cytochrome b561	Energy production and conversion [C]	11.43
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	11.43
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	11.43
COG1290	Cytochrome b subunit of the bc complex	Energy production and conversion [C]	1.90
COG3637	Opacity protein LomR and related surface antigens	Cell wall/membrane/envelope biogenesis [M]	1.90
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.95
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.95
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.95
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.95
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.95

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
All Organisms	root	All Organisms	38.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
cellular organisms	root	All Organisms → cellular organisms	38.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.48 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.48 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	20.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.00 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	2.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.90 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.00 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.86 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.90 %
Rhodoblastus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.00 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	2.86 %
Rhodoblastus acidophilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus acidophilus	0.95 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.00 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	2.86 %
Rhodoblastus acidophilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus acidophilus	0.95 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352025\|deepsgr__Contig_45876	Not Available	592	Open in IMG/M
2209111022\|2221208459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	953	Open in IMG/M
3300001431\|F14TB_106596495	Not Available	742	Open in IMG/M
3300001661\|JGI12053J15887_10009735	All Organisms → cellular organisms → Bacteria	5233	Open in IMG/M
3300004463\|Ga0063356_102128314	Not Available	852	Open in IMG/M
3300005331\|Ga0070670_100049535	All Organisms → cellular organisms → Bacteria	3612	Open in IMG/M
3300005338\|Ga0068868_102373682	Not Available	506	Open in IMG/M
3300005344\|Ga0070661_101127249	Not Available	654	Open in IMG/M
3300005354\|Ga0070675_101165154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	709	Open in IMG/M
3300005435\|Ga0070714_100541169	Not Available	1114	Open in IMG/M
3300005436\|Ga0070713_100153597	All Organisms → cellular organisms → Bacteria	2050	Open in IMG/M
3300005441\|Ga0070700_101362369	Not Available	598	Open in IMG/M
3300005563\|Ga0068855_101938524	Not Available	596	Open in IMG/M
3300005618\|Ga0068864_101831260	Not Available	612	Open in IMG/M
3300006032\|Ga0066696_11103869	Not Available	504	Open in IMG/M
3300006038\|Ga0075365_10364031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1019	Open in IMG/M
3300006038\|Ga0075365_10470733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	888	Open in IMG/M
3300006177\|Ga0075362_10198920	Not Available	975	Open in IMG/M
3300006844\|Ga0075428_100235268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1977	Open in IMG/M
3300006953\|Ga0074063_13199486	Not Available	548	Open in IMG/M
3300007788\|Ga0099795_10078324	Not Available	1260	Open in IMG/M
3300007788\|Ga0099795_10092366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1175	Open in IMG/M
3300009089\|Ga0099828_11180079	Not Available	679	Open in IMG/M
3300009090\|Ga0099827_10038329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3523	Open in IMG/M
3300009100\|Ga0075418_12857537	Not Available	527	Open in IMG/M
3300009143\|Ga0099792_10037952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus acidophilus	2277	Open in IMG/M
3300009147\|Ga0114129_10784455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	1217	Open in IMG/M
3300009156\|Ga0111538_10759447	Not Available	1228	Open in IMG/M
3300009156\|Ga0111538_11401900	Not Available	881	Open in IMG/M
3300009162\|Ga0075423_11252778	Not Available	792	Open in IMG/M
3300009553\|Ga0105249_12165248	Not Available	629	Open in IMG/M
3300010373\|Ga0134128_10460882	Not Available	1418	Open in IMG/M
3300011119\|Ga0105246_10298304	Not Available	1300	Open in IMG/M
3300012361\|Ga0137360_11061578	Not Available	699	Open in IMG/M
3300012469\|Ga0150984_119595152	Not Available	825	Open in IMG/M
3300012502\|Ga0157347_1069761	Not Available	517	Open in IMG/M
3300012683\|Ga0137398_10260104	Not Available	1158	Open in IMG/M
3300012685\|Ga0137397_10152024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	1714	Open in IMG/M
3300012927\|Ga0137416_11597074	Not Available	594	Open in IMG/M
3300012938\|Ga0162651_100079761	Not Available	546	Open in IMG/M
3300012944\|Ga0137410_11812686	Not Available	539	Open in IMG/M
3300012986\|Ga0164304_10465095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	915	Open in IMG/M
3300012988\|Ga0164306_10324590	Not Available	1132	Open in IMG/M
3300012989\|Ga0164305_10191077	Not Available	1431	Open in IMG/M
3300013306\|Ga0163162_10305329	All Organisms → cellular organisms → Bacteria	1724	Open in IMG/M
3300014968\|Ga0157379_10813998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	882	Open in IMG/M
3300015242\|Ga0137412_10664774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	780	Open in IMG/M
3300015371\|Ga0132258_11289476	All Organisms → cellular organisms → Bacteria	1846	Open in IMG/M
3300015372\|Ga0132256_100275525	Not Available	1759	Open in IMG/M
3300015372\|Ga0132256_100757309	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300017965\|Ga0190266_10433091	Not Available	742	Open in IMG/M
3300018000\|Ga0184604_10010747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1931	Open in IMG/M
3300018000\|Ga0184604_10038724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1259	Open in IMG/M
3300018027\|Ga0184605_10323551	Not Available	697	Open in IMG/M
3300018027\|Ga0184605_10361704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	655	Open in IMG/M
3300018028\|Ga0184608_10004276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4508	Open in IMG/M
3300018031\|Ga0184634_10249949	Not Available	812	Open in IMG/M
3300018051\|Ga0184620_10011263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2040	Open in IMG/M
3300018066\|Ga0184617_1015635	Not Available	1608	Open in IMG/M
3300018067\|Ga0184611_1110680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	958	Open in IMG/M
3300018073\|Ga0184624_10060797	Not Available	1552	Open in IMG/M
3300018074\|Ga0184640_10109255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1210	Open in IMG/M
3300018081\|Ga0184625_10018152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3331	Open in IMG/M
3300018469\|Ga0190270_10180692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1757	Open in IMG/M
3300018469\|Ga0190270_12688186	Not Available	560	Open in IMG/M
3300018476\|Ga0190274_12064614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	666	Open in IMG/M
3300018482\|Ga0066669_12244123	Not Available	519	Open in IMG/M
3300019767\|Ga0190267_10110396	Not Available	1116	Open in IMG/M
3300019866\|Ga0193756_1055425	Not Available	533	Open in IMG/M
3300019873\|Ga0193700_1035444	Not Available	816	Open in IMG/M
3300019887\|Ga0193729_1228438	Not Available	610	Open in IMG/M
3300019999\|Ga0193718_1088794	Not Available	647	Open in IMG/M
3300020001\|Ga0193731_1010061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2428	Open in IMG/M
3300021078\|Ga0210381_10234701	Not Available	648	Open in IMG/M
3300025915\|Ga0207693_10067481	Not Available	2801	Open in IMG/M
3300025916\|Ga0207663_10811357	Not Available	746	Open in IMG/M
3300025929\|Ga0207664_11092928	Not Available	713	Open in IMG/M
3300025944\|Ga0207661_10892112	Not Available	819	Open in IMG/M
3300025945\|Ga0207679_10642185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	959	Open in IMG/M
3300026088\|Ga0207641_11887407	Not Available	599	Open in IMG/M
3300026557\|Ga0179587_10192055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1291	Open in IMG/M
3300027388\|Ga0208995_1024271	Not Available	1054	Open in IMG/M
3300027616\|Ga0209106_1138518	Not Available	544	Open in IMG/M
3300027681\|Ga0208991_1088510	Not Available	930	Open in IMG/M
3300027882\|Ga0209590_10077101	All Organisms → cellular organisms → Bacteria	1935	Open in IMG/M
3300027903\|Ga0209488_10130804	Not Available	1892	Open in IMG/M
3300027903\|Ga0209488_10289405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1224	Open in IMG/M
3300027909\|Ga0209382_10134977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2870	Open in IMG/M
3300028536\|Ga0137415_10839655	Not Available	729	Open in IMG/M
3300028710\|Ga0307322_10172784	Not Available	582	Open in IMG/M
3300028719\|Ga0307301_10003339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4489	Open in IMG/M
3300028720\|Ga0307317_10087329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1026	Open in IMG/M
3300028754\|Ga0307297_10037106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1461	Open in IMG/M
3300028784\|Ga0307282_10190552	Not Available	979	Open in IMG/M
3300028793\|Ga0307299_10201062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	749	Open in IMG/M
3300028811\|Ga0307292_10255367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	728	Open in IMG/M
3300028876\|Ga0307286_10088781	Not Available	1077	Open in IMG/M
3300028878\|Ga0307278_10267716	Not Available	757	Open in IMG/M
3300031093\|Ga0308197_10186586	Not Available	695	Open in IMG/M
3300031720\|Ga0307469_10566895	Not Available	1009	Open in IMG/M
3300031740\|Ga0307468_100511574	Not Available	955	Open in IMG/M
3300031740\|Ga0307468_101464460	Not Available	631	Open in IMG/M
3300031740\|Ga0307468_101534158	Not Available	619	Open in IMG/M
3300032205\|Ga0307472_100831917	Not Available	847	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.33%
Host-Associated	Host-Associated	26.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.95%
Plants	Host-Associated → Plants	26.67%
Aquatic	Environmental → Aquatic	12.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.19%
Sediment	Environmental → Aquatic → Sediment	11.43%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.67%
Roots	Host-Associated → Plants → Roots	3.81%
Freshwater	Environmental → Aquatic → Freshwater	0.95%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.43%
Loam	Environmental → Terrestrial → Soil → Loam	11.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.52%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.71%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.86%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.95%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.71%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.81%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.95%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.95%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.19%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	11.43%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.81%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.90%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.95%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.95%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.95%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012502	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_00453240	2199352025	Soil	ICFRHEEKMTMSTKITMALVAAVIACASPALAGGNDNRDTEYTYKTAQFCIPQLDELPGTTRLYC
2222044338	2209111022	Grass Soil	MSTKITMALVAAVIACASLALAEGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC
F14TB_1065964951	3300001431	Soil	MTMSTKITMALVAAVIACASPALAGGNRDRSNEYTYKTAQYCLPQLDDLPGTTRVYC*
JGI12053J15887_100097356	3300001661	Forest Soil	MPTKITIALVAAVIACASPALAGGNDNRDTEYTYKTAQFCIPQLDELPGTTRLYC*
Ga0063356_1021283141	3300004463	Arabidopsis Thaliana Rhizosphere	MCFRHEEKMTMSTKVTMAFVPVIIALALPALAAGNGNRDNESTYKSAQYCIPQFDELPGTTRVYC*
Ga0070670_1000495355	3300005331	Switchgrass Rhizosphere	MSTKVRMAFVPIIIALAVPALAAGNGNRDNESTYKSAQYCIPQFDELPGTTRVYC*
Ga0068868_1023736821	3300005338	Miscanthus Rhizosphere	MSTKITMALVAAVIACASPALAEGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC*
Ga0070661_1011272492	3300005344	Corn Rhizosphere	MTMSTKVRMAFVPIIIALAVPALAAGNGNRDNESTYKSAQYCIPQFDELPGTTRVYC*
Ga0070675_1011651542	3300005354	Miscanthus Rhizosphere	EEKMTMSTKVRMAFVPIIIALAVPALAAGNGNRDNESTYKSAQYCIPQFDELPGTTRVYC
Ga0070714_1005411692	3300005435	Agricultural Soil	MSIKIVMALVTAVIACASPALAGGNGNRDRNNEYTYKTAQYCIPQLDELPGTTRLYC*
Ga0070713_1001535971	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSIKIVMALLTVVIACASPALAGGNRDRNNEYTYKTAQYCLPQLDESPGTTRLYC*
Ga0070700_1013623691	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MTMSTKITMALVAAVIACASPALAGGNDNRDTEYTYKTAQFCIPQLDELPGTTRLYC*
Ga0068855_1019385241	3300005563	Corn Rhizosphere	MSTKITMALVAAVIACASPALAGGNGNRDIEYTYKNAQFCIPQLDELPGTTRLYC*
Ga0068864_1018312601	3300005618	Switchgrass Rhizosphere	MSTKITMALVAAVIACASPALAGGNDNRDTEYTYKTAQFCIPQLDELPGTTRLYC*
Ga0066696_111038691	3300006032	Soil	MSIKIVMALVTAVIACASPALAGGNRDRNNEYTYKTAQYCLPQLDEPP
Ga0075365_103640312	3300006038	Populus Endosphere	MSTKITMALVAAVIASASPALAGGNGNRGTEYTYKTAQYCIPQLDELPGTTRLYC*
Ga0075365_104707332	3300006038	Populus Endosphere	MSTKITMALVAAIIAYASPALAGGNRNRDNEYTYKTAQHCLPQLDDLPDTTRVYC*
Ga0075362_101989203	3300006177	Populus Endosphere	EKMTMSTKITMALVVAVIACASPALAGGNRNRNDEYSYKTAQYCIPELDELPGTTRLYC*
Ga0075428_1002352682	3300006844	Populus Rhizosphere	MSTKITMALVAAVIACASPALAGGNRDRSNEYTYKTAQYCLPQLDDLPGTTRVYC*
Ga0074063_131994861	3300006953	Soil	MSTKITMALVAAVIACASSALAEGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC*
Ga0099795_100783243	3300007788	Vadose Zone Soil	MTMSTKITMALVAAVIACASPALAEGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC*
Ga0099795_100923662	3300007788	Vadose Zone Soil	MTMPTKVAMAFAAVIVALAFPAFAAGTGARDNGYTYKLAQYCVPQHDELPGTTKVYC*
Ga0099828_111800791	3300009089	Vadose Zone Soil	MTMSIKVAMAFIAVIVALAPPAFAAGNGARDGEYTDKIAQYCVPQHDELPGTTKVYC*
Ga0099827_100383294	3300009090	Vadose Zone Soil	MTMSTKVTMAFVAAVIALAPPALAAGIGKRDNEYTYKLAQYCTPQLDELPGTTRVFC*
Ga0075418_128575371	3300009100	Populus Rhizosphere	REICFPTRGEMTMSIKIVMALVTAVIACASPALAGGNRDRNNEYTYKTAQYCLPQLDEAPGTTRLYC*
Ga0099792_100379522	3300009143	Vadose Zone Soil	MTMSTKITMALVAAVIACASPALAGGNGNRDTYTYKTAQFCIPQLDELPGTTRLYC*
Ga0114129_107844553	3300009147	Populus Rhizosphere	MTMSIKIVMALVTAVIACASPALAGGNRDRNNEYTYKTAQYCLPQLDEPPGTTRLYC*
Ga0111538_107594472	3300009156	Populus Rhizosphere	MTMSIKIVMALVTVVIACASPALAGGNRDRNNEYTYKTAQYCLPQLDEPPGTTRLYC*
Ga0111538_114019001	3300009156	Populus Rhizosphere	MTMSTKITMALVAAIIAYASPALAGGNRNRDNEYTYKTAQYCLPQLDDLPDATR
Ga0075423_112527782	3300009162	Populus Rhizosphere	MTMSIKIVMALLTVVIACASPALAGGNRDRNNEYTYKTAQYCLPQLDEPPGTTRLYC*
Ga0105249_121652481	3300009553	Switchgrass Rhizosphere	MCFQHEEKMTMSTKVRMAFVPIIIALAVPALAAGNGNRDNESTYKSAQYCIPQFDELPG
Ga0134128_104608822	3300010373	Terrestrial Soil	MCFQHEEKMTMSTKVRMAFVPIIIALAVPALAAGNGNRVNESTYKSAQYCIPQFDELPGTTRVYC*
Ga0105246_102983042	3300011119	Miscanthus Rhizosphere	MCFQHEEKMTMSTKVRMAFVPIIIALAVPALAAGNGNRDNESTYKSAQYCIPQFDELPGTTRVYC*
Ga0137360_110615782	3300012361	Vadose Zone Soil	MCFPHEEKMTMSTKVAMAFVAAIFALALPALATGNGNRDNEHTYKLAQYCAPQHDELPGATKVYC*
Ga0150984_1195951521	3300012469	Avena Fatua Rhizosphere	MTMSTKITMALVAAVIACASSALAEDNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC*
Ga0157347_10697611	3300012502	Arabidopsis Rhizosphere	MTMSTKITMALVVAVIACASPALAGGNRNRNDEYSYKTAQYCIPELDELPGTTRL
Ga0137398_102601041	3300012683	Vadose Zone Soil	MTMSTKITMALVAAVIACASPALAGGNGNRDTEYDYKTAQFCIPQLDELPGTTRLYC*
Ga0137397_101520243	3300012685	Vadose Zone Soil	MTMSTKITMALVAAVIACASPALAGGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC*
Ga0137413_103242383	3300012924	Vadose Zone Soil	MTMSIKLTMAFVAAIIALASPALDAGNGNRANELAYKLAQYCVPQHDELPG
Ga0137416_115970741	3300012927	Vadose Zone Soil	MTMSTKITMALVTAVIACASPALAGGNGNRDAEYTYKIAQFCIPQLDELPGTTRLYC*
Ga0162651_1000797611	3300012938	Soil	MTMSTKITMALVAAVIASASPALAGGNGNRGTEYTYKTAQYCIPQLDELPGAARLC*
Ga0137410_118126862	3300012944	Vadose Zone Soil	MTMSTKITMALVAAVIACASPALAGGNGNRDAEYTYKTAQFCIPQLDELPGTTRLYC*
Ga0164304_104650951	3300012986	Soil	MIMSTKITMALVAAVIACASPALAEGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC*
Ga0164306_103245901	3300012988	Soil	MTMSTKITMALVAAVIACASSALAEGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC*
Ga0164305_101910772	3300012989	Soil	MTMSTKITIALVAAVIACASPALAGGNDNRDTEYTYKTAQFCIPQLDELPGTTRLYC*
Ga0163162_103053293	3300013306	Switchgrass Rhizosphere	MTMSTKITIALVAAVIACASPALAGGNGNRDIEYTYKNAQFCIPQLDELPGTTRLYC*
Ga0157379_108139981	3300014968	Switchgrass Rhizosphere	MCFQHEEKMTMSTKIRMAFVPIIIALAVPALAAGNGNRDNESTYKSAQYCIPQFDELPGTTRVYC*
Ga0137412_106647742	3300015242	Vadose Zone Soil	MIMSTKITMAFVAAVITFASSALAAGTGDRDDQYTFKSAQYCIPQLDEPPGTIRVYC*
Ga0132258_112894764	3300015371	Arabidopsis Rhizosphere	MPTKITMALVAAIIAYASPALAGGNRNRDNEYTYKTAQYCLPQLDDLSDTTRVYC*
Ga0132256_1002755253	3300015372	Arabidopsis Rhizosphere	MTMSTKITMALVVAVIACASPALAGGNRDRNNEYTYKTAQYCLPQLDEPPGTTRLYC*
Ga0132256_1007573092	3300015372	Arabidopsis Rhizosphere	MSTKITMALVAAIIAYASPALAGGNRNRDNEYTYKTAQYCLPQLDDLSDTTRVYC*
Ga0190266_104330911	3300017965	Soil	MSTKITMALVAAVIACASPALAQGNGNRDTEYTYKTAQFCTPQLDELPGTTRLYC
Ga0184604_100107473	3300018000	Groundwater Sediment	MSTKITMALVAAVIACASPALAEGNGNRDTDYTYKTAQFCIPQLDELPGTTRLYC
Ga0184604_100387243	3300018000	Groundwater Sediment	MSTKITMAFVAAVITFASSALAAGTGDRDDQYTFKSAQYCIPQLDEPPGTTRVYC
Ga0184605_103235511	3300018027	Groundwater Sediment	MSTKITIALVAAVIACASPALAGGNDNRDTEYTYKTAQFCIPQLDELP
Ga0184605_103617043	3300018027	Groundwater Sediment	ALVAAVIACASPALAGGNDNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0184608_100042765	3300018028	Groundwater Sediment	MSTKITMALVAAVIACASPALAGGNDNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0184634_102499491	3300018031	Groundwater Sediment	MSTKITMALVAAVIACASPALAQGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0184620_100112631	3300018051	Groundwater Sediment	MSTKITMALVAAVIVCASPALAEGNGNRDTEYTHKTAQFCIPQLDELPGTTRLYC
Ga0184617_10156352	3300018066	Groundwater Sediment	MSTKITIALVAAVIACASPALAGGNDNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0184611_11106802	3300018067	Groundwater Sediment	MSTKITMALVAAVIVCASPALAEGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0184624_100607973	3300018073	Groundwater Sediment	MLTNITMALVAAVIACASPALAEGKGNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0184640_101092551	3300018074	Groundwater Sediment	MSTNITMALVAAVIACASPALAGGNGNRDTEYTYKTAQYCIPQLDELPGTTRLYC
Ga0184625_100181524	3300018081	Groundwater Sediment	MSTKITMAFVAAVITFASSALAAGTGDRDDQYTFNSAQYCIPQLDEPPGTTRVYC
Ga0190270_101806922	3300018469	Soil	MSTKITMALVAAVIACAPPALGGCNGNRDTEHTYETAQYCIPQLDELPGTTRLYC
Ga0190270_126881862	3300018469	Soil	AFVAAVITFASSALAAGTGDRDDQYTFKSAQYCIPQLDEPPGTTRVYC
Ga0190274_120646141	3300018476	Soil	MSTKITMALMAAVILSASPALAGSNGNRDTEYTCKTAQYCMPQLDELPGTTRLYC
Ga0066669_122441231	3300018482	Grasslands Soil	MSIKIVMALVTAVIACASPALAGGNRDRNNEYTYKTAQYCLPQLDEPPGTTRLYC
Ga0190267_101103961	3300019767	Soil	MSTRITMALVAAVIACASPALAEGNGNRDTEYTYKTAQYCMPQLDELPGTTRLYC
Ga0193756_10554251	3300019866	Soil	MSTKITMALVAAVIACASPALAEGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0193700_10354442	3300019873	Soil	MIMSTKITMAFVAAVITFASSALAAGTGDRDDQYTFKSAQYCIPQLDEPPGTTRVYC
Ga0193729_12284381	3300019887	Soil	MSTKITMALVAAVIACASPALAGGNGNRDAEYTYKTAQFCIPQLDELPGTTRLYC
Ga0193718_10887941	3300019999	Soil	MSTKITMALVAAVIACASPALAGGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0193731_10100612	3300020001	Soil	MSTKITMALVAAVIACASPALAEGNGNRDTEYTHKTAQFCIPQLDELPGTTRLYC
Ga0210381_102347012	3300021078	Groundwater Sediment	KGICFRHKEKVTMSTKITMALVAAVIVCASPALAEGNGNRDTEYTHKTAQFCIPQLDELPGTTRLYC
Ga0207693_100674812	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSIKIVMALLTVVIACASPALAGGNRDRNNEYTYKTAQYCIPQLDELPGTTRLYC
Ga0207663_108113572	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSTKISMALVAAVIACASPALAGGNDNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0207664_110929282	3300025929	Agricultural Soil	MSIKIVMALVTAVIACASPALAGGNGNRDRNNEYTYKTAQYCLPQLDESPGTTRLYC
Ga0207661_108921122	3300025944	Corn Rhizosphere	MCFQHEEKMTMSTKVTMAFVPIIIALAVPALAAGNGNRDNESTYKSAQYCIPQFDELPGTTRVYC
Ga0207679_106421851	3300025945	Corn Rhizosphere	IQSAKAMCFQHEEKMTMSTKVRMAFVPIIIALAVPALAAGNGNRDNESTYKSAQYCIPQFDELPGTTRVYC
Ga0207641_118874071	3300026088	Switchgrass Rhizosphere	MCFQHEEKMTMSTKVRMAFVPIIIALAVPALAAGNGNRDNESTYKSAQYCIPQFDELPGTTRVYC
Ga0179587_101920551	3300026557	Vadose Zone Soil	KGICFRHEEKMTMSTKITMALVAAVIACASPALAGGNGNRDTYTYKTAQFCIPQLDELPGTTRLYC
Ga0208995_10242712	3300027388	Forest Soil	MPTKITIALVAAVIACASPALAGGNDNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0209106_11385182	3300027616	Forest Soil	MSTKITMALMAAVIASASPALAGGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0208991_10885101	3300027681	Forest Soil	MSTKITMALVAAVIACASPALAGGNGNGDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0209590_100771012	3300027882	Vadose Zone Soil	MSTKVTMAFVAAVIALAPPALAAGIGKRDNEYTYKLAQYCTPQLDELPGTTRVFC
Ga0209488_101308042	3300027903	Vadose Zone Soil	MSTKITMALVAAVIACASPALAGGNGNRDTYTYKTAQFCIPQLDELPGTTRLYC
Ga0209488_102894051	3300027903	Vadose Zone Soil	MSTKIATAFAAVIVALAFPAFAAGTGARDNGYTYKLAQYCVPQHDELPGTTKVYC
Ga0209382_101349774	3300027909	Populus Rhizosphere	MSTKITMALVAAVIACASPALAGGNRDRSNEYTYKTAQYCLPQLDDLPGTTRVYC
Ga0137415_108396552	3300028536	Vadose Zone Soil	MSTKITMALVAAVIACASPALAGGNGNRDAEYTYKIAQFCIPQLDELPGTTRLYC
Ga0307322_101727842	3300028710	Soil	MIVSTKITMAFVAAVITFASSALAAGTGDRDDQYTFKSAQYCIPQLDEPPGTTRVYC
Ga0307301_100033393	3300028719	Soil	MSTKITMVFVAAVITFASSALAAGTGDRDDQYTFKSAQYCIPQLDEPPGTTRVYC
Ga0307317_100873291	3300028720	Soil	SAKGICFRHKEKVTMSTKITMALVAAVIVCASPALAEGNGNRDTEYTHKTAQFCIPQLDELPGTTRLYC
Ga0307297_100371061	3300028754	Soil	MSTKITMAFVAAVITFASSALAAGTGDRDDQYTFKSAQYCIPQLDEPHGTTRVYC
Ga0307282_101905521	3300028784	Soil	MSTKVTMAFVAAIIALAFPTLVAGNDNRENQHPYRSAQYCIPQLDDLPGTTRLYCSR
Ga0307299_102010621	3300028793	Soil	HKEKVTMSTKITMALVAAVIVCASPALAEGNGNRDTEYTHKTAQFCIPQLDELPGTTRLY
Ga0307292_102553672	3300028811	Soil	TMALVAAVIVCASPALAEGNGNRDTEYTHKTAQFCIPQLDELPGTTRLYC
Ga0307286_100887811	3300028876	Soil	MSTKITMALVAAVIVCASPALAEGNGNRDTEYTHKTAQFCIPQLDEL
Ga0307278_102677161	3300028878	Soil	MIMSTKITMAFVAAVITFASSALVAGTGDRDDQYTFKSVQYCIPQLDEPPGMTRVYC
Ga0308197_101865861	3300031093	Soil	MSTKITMALVTAVIACASPALAEGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0307469_105668953	3300031720	Hardwood Forest Soil	MSIKIVMALVTVVIACASPALAGGNRDRNNEYTYKTAQYCLPQLDEPPGTTRLYC
Ga0307468_1005115742	3300031740	Hardwood Forest Soil	MSIKIVMALVTAVIACASPALAGGNRDRNNEYTYKTAQYCLPQLDEPPGTARLYC
Ga0307468_1014644601	3300031740	Hardwood Forest Soil	ALAAAIIACASPALAGGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC
Ga0307468_1015341581	3300031740	Hardwood Forest Soil	MSTKITMALVAAVIACASPALAGGNGNRDTEYTYKTAQFCIPQLDELPGTTRLY
Ga0307472_1008319171	3300032205	Hardwood Forest Soil	MSTKITMALVTAVIACASPALAGGNGNRDTEYTYKTAQFCIPQLDELPGTTRLYC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095763

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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