Metagenome Family F095750

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095750
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	66 residues
Representative Sequence	VNKLCALAAALLVAQAGNGLAQEQQSFKTIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVC
Number of Associated Samples	82
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.05 %
% of genes near scaffold ends (potentially truncated)	99.05 %
% of genes from short scaffolds (< 2000 bps)	97.14 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.714 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.286 % of family members)
Environment Ontology (ENVO)	Unclassified (45.714 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.810 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 26.87% β-sheet: 26.87% Coil/Unstructured: 46.27%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF14437	MafB19-deam	57.14
PF00383	dCMP_cyt_deam_1	18.10
PF01479	S4	11.43
PF03602	Cons_hypoth95	1.90
PF03401	TctC	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0742	16S rRNA G966 N2-methylase RsmD	Translation, ribosomal structure and biogenesis [J]	1.90
COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	Translation, ribosomal structure and biogenesis [J]	1.90
COG2242	Precorrin-6B methylase 2	Coenzyme transport and metabolism [H]	1.90
COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	Translation, ribosomal structure and biogenesis [J]	1.90
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	1.90
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.71 %
Unclassified	root	N/A	14.29 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.71 %
Unclassified	root	N/A	14.29 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.71 %
Unclassified	root	N/A	14.29 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	85.71 %
Unclassified	root	N/A	14.29 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	85.71 %
Unclassified	root	N/A	14.29 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	78.10 %
Unclassified	root	N/A	14.29 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	41.90 %
Unclassified	root	N/A	14.29 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	2.86 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.90 %

Name	Rank	Taxonomy	Distribution
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	40.95 %
Unclassified	root	N/A	14.29 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	1.90 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	1.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.95 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	40.95 %
Unclassified	root	N/A	14.29 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	1.90 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.90 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.95 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	40.95 %
Unclassified	root	N/A	14.29 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1.90 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.90 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004281\|Ga0066397_10107979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	592	Open in IMG/M
3300004633\|Ga0066395_10674913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	611	Open in IMG/M
3300005332\|Ga0066388_103747190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	776	Open in IMG/M
3300005332\|Ga0066388_106022295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	612	Open in IMG/M
3300005332\|Ga0066388_107394993	Not Available	551	Open in IMG/M
3300005332\|Ga0066388_107652691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	541	Open in IMG/M
3300005436\|Ga0070713_101400945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	678	Open in IMG/M
3300005437\|Ga0070710_10045600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2438	Open in IMG/M
3300005447\|Ga0066689_10891486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	550	Open in IMG/M
3300005466\|Ga0070685_10109760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1697	Open in IMG/M
3300005564\|Ga0070664_100741060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	917	Open in IMG/M
3300005764\|Ga0066903_105360893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	677	Open in IMG/M
3300005764\|Ga0066903_105675866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	656	Open in IMG/M
3300005764\|Ga0066903_107299801	Not Available	571	Open in IMG/M
3300005764\|Ga0066903_108259894	Not Available	532	Open in IMG/M
3300006038\|Ga0075365_10824747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	654	Open in IMG/M
3300006038\|Ga0075365_11071967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	567	Open in IMG/M
3300006186\|Ga0075369_10648435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	507	Open in IMG/M
3300006845\|Ga0075421_102312527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	564	Open in IMG/M
3300009089\|Ga0099828_11314067	Not Available	640	Open in IMG/M
3300010043\|Ga0126380_11849576	Not Available	548	Open in IMG/M
3300010047\|Ga0126382_12405880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	511	Open in IMG/M
3300010048\|Ga0126373_10645680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1114	Open in IMG/M
3300010360\|Ga0126372_10563581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1085	Open in IMG/M
3300010360\|Ga0126372_11120995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	806	Open in IMG/M
3300010361\|Ga0126378_10677616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1143	Open in IMG/M
3300010362\|Ga0126377_12754691	Not Available	566	Open in IMG/M
3300010366\|Ga0126379_13069823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300012349\|Ga0137387_11314984	Not Available	505	Open in IMG/M
3300012961\|Ga0164302_10643941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	776	Open in IMG/M
3300012971\|Ga0126369_13385650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	522	Open in IMG/M
3300012986\|Ga0164304_10083695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1853	Open in IMG/M
3300015373\|Ga0132257_104377327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300016270\|Ga0182036_10340661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1153	Open in IMG/M
3300016270\|Ga0182036_10377838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1099	Open in IMG/M
3300016270\|Ga0182036_11582694	Not Available	551	Open in IMG/M
3300016270\|Ga0182036_11746949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	526	Open in IMG/M
3300016294\|Ga0182041_10548477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1009	Open in IMG/M
3300016341\|Ga0182035_10992179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	744	Open in IMG/M
3300016341\|Ga0182035_11198427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	678	Open in IMG/M
3300016357\|Ga0182032_10204172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1506	Open in IMG/M
3300016357\|Ga0182032_10959381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	729	Open in IMG/M
3300018027\|Ga0184605_10343405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674	Open in IMG/M
3300018072\|Ga0184635_10171178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	867	Open in IMG/M
3300018466\|Ga0190268_11466262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	590	Open in IMG/M
3300018476\|Ga0190274_10482365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1233	Open in IMG/M
3300021344\|Ga0193719_10479615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300021560\|Ga0126371_12827456	Not Available	588	Open in IMG/M
3300025937\|Ga0207669_11427546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	589	Open in IMG/M
3300025945\|Ga0207679_10697550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	921	Open in IMG/M
3300025960\|Ga0207651_10513078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1038	Open in IMG/M
3300027401\|Ga0208637_1007215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1068	Open in IMG/M
3300027862\|Ga0209701_10376232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	797	Open in IMG/M
3300027875\|Ga0209283_10662996	Not Available	655	Open in IMG/M
3300028708\|Ga0307295_10045508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1125	Open in IMG/M
3300028710\|Ga0307322_10136031	Not Available	648	Open in IMG/M
3300028718\|Ga0307307_10070147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1044	Open in IMG/M
3300028778\|Ga0307288_10335666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300028782\|Ga0307306_10152304	Not Available	643	Open in IMG/M
3300028812\|Ga0247825_11419973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300028814\|Ga0307302_10118755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1269	Open in IMG/M
3300028814\|Ga0307302_10201868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	970	Open in IMG/M
3300028828\|Ga0307312_10414288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	885	Open in IMG/M
3300028881\|Ga0307277_10191186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	896	Open in IMG/M
3300031170\|Ga0307498_10003475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2626	Open in IMG/M
3300031170\|Ga0307498_10068595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1013	Open in IMG/M
3300031543\|Ga0318516_10358265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	841	Open in IMG/M
3300031545\|Ga0318541_10309696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	880	Open in IMG/M
3300031545\|Ga0318541_10317288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	869	Open in IMG/M
3300031546\|Ga0318538_10294861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	873	Open in IMG/M
3300031546\|Ga0318538_10463398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	686	Open in IMG/M
3300031561\|Ga0318528_10556627	Not Available	615	Open in IMG/M
3300031561\|Ga0318528_10596376	Not Available	592	Open in IMG/M
3300031564\|Ga0318573_10397398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	740	Open in IMG/M
3300031679\|Ga0318561_10198557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1087	Open in IMG/M
3300031681\|Ga0318572_10304286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	942	Open in IMG/M
3300031681\|Ga0318572_10592429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	660	Open in IMG/M
3300031713\|Ga0318496_10249439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	978	Open in IMG/M
3300031713\|Ga0318496_10514809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	661	Open in IMG/M
3300031736\|Ga0318501_10389012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	752	Open in IMG/M
3300031763\|Ga0318537_10114411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1001	Open in IMG/M
3300031770\|Ga0318521_10429347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	789	Open in IMG/M
3300031777\|Ga0318543_10342167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	669	Open in IMG/M
3300031777\|Ga0318543_10552734	Not Available	516	Open in IMG/M
3300031780\|Ga0318508_1064017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	989	Open in IMG/M
3300031794\|Ga0318503_10020115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1873	Open in IMG/M
3300031831\|Ga0318564_10168979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	975	Open in IMG/M
3300031832\|Ga0318499_10123173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1008	Open in IMG/M
3300031833\|Ga0310917_10043978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2712	Open in IMG/M
3300031833\|Ga0310917_10155688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1510	Open in IMG/M
3300031845\|Ga0318511_10103072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1215	Open in IMG/M
3300031860\|Ga0318495_10327740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	679	Open in IMG/M
3300031879\|Ga0306919_10585778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	860	Open in IMG/M
3300031910\|Ga0306923_11637631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	667	Open in IMG/M
3300031945\|Ga0310913_10529457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	836	Open in IMG/M
3300031946\|Ga0310910_10504202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	960	Open in IMG/M
3300031954\|Ga0306926_11918913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	668	Open in IMG/M
3300032025\|Ga0318507_10126683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1080	Open in IMG/M
3300032039\|Ga0318559_10304724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	739	Open in IMG/M
3300032059\|Ga0318533_10947324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	631	Open in IMG/M
3300032059\|Ga0318533_10999581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	613	Open in IMG/M
3300032064\|Ga0318510_10026624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1898	Open in IMG/M
3300032065\|Ga0318513_10099161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1361	Open in IMG/M
3300032066\|Ga0318514_10060269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1855	Open in IMG/M
3300032091\|Ga0318577_10197279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	962	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.43%
Host-Associated	Host-Associated	8.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.52%
Plants	Host-Associated → Plants	8.57%
Aquatic	Environmental → Aquatic	1.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.76%
Roots	Host-Associated → Plants → Roots	2.86%
Sediment	Environmental → Aquatic → Sediment	1.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.14%
Loam	Environmental → Terrestrial → Soil → Loam	12.38%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.81%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.86%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.81%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006186	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027401	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066397_101079791	3300004281	Tropical Forest Soil	VKKPCALAATLLAIASFAAGGPTANAQEQQSFKTIIGKGYEIKGVTFARGEATENREIFLVTLQKDKSVAVCYFAA
Ga0066395_106749131	3300004633	Tropical Forest Soil	VNKLCALAAVLLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAA
Ga0066388_1037471902	3300005332	Tropical Forest Soil	VKRLCAAAAALLAVGFFTAASAPDGHAQEQQSFKTIVGKGYDIKSVTFAKGEVTENREVFVVTLQKDKSVAVCYF
Ga0066388_1060222951	3300005332	Tropical Forest Soil	VTKLCAFAVALLVVVQALSARAQEQQSFKTIMGKGYEIKAVTFARGEATDNREIFVITLQKE
Ga0066388_1073949932	3300005332	Tropical Forest Soil	VTKLCALAVAFLAVVLAPPARAQEQQSFKTIMGKGYEIKTVTFARGEATDNREIFVVTLQKEKSVAV
Ga0066388_1076526911	3300005332	Tropical Forest Soil	VKKLCALAATLFAVPLFAAAWAPDANAQEQQSFKTIIGKGYEIKGVTFARGEATENREIFLVTLQK
Ga0070713_1014009452	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VKKLCALAAASIVIAQAPDVSAQEQQSFKTIMGKGYEIKNVTFARGESTENRDIFVVTLQKDKSVAVC
Ga0070710_100456004	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VKKLYALAVACIAIAGARDARAQEQQSFRTIMGKGYEIKSVAFARGEATDNREIFVVTL
Ga0066689_108914862	3300005447	Soil	VNKSCALAVALIAFAGHGLAQEQQSFKTIMGKGYEIKSVTFAKGESTENREIFVVTLQK
Ga0070685_101097603	3300005466	Switchgrass Rhizosphere	MKKLCALAVACIAIVQAAEGVAQEQQSFKTVIGKSYEIKNVTFARGEATDNRDIFAVTLQKDKSVAVCYFAA
Ga0070664_1007410601	3300005564	Corn Rhizosphere	VKKLCALAAACIVIAQAPDGSAQEQQSFKTIIGKGYEIKNVTFARGESTENRDIFVVTLQKDKSVAVC
Ga0066903_1053608931	3300005764	Tropical Forest Soil	VNKLCALAAALLVAQAGNGSAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFLVTLQ
Ga0066903_1056758661	3300005764	Tropical Forest Soil	VTKLCAFAVALLVAVQALPARAQEQQSFKTIMGKGYEIKAVTFARGEATDNREIFVVTLQKE
Ga0066903_1072998012	3300005764	Tropical Forest Soil	VKKLCALAAAVFVAEAGTGLAQEQQSFKTIMGKGYEIKNVTFARGEATENREIFLVTLQKDKSVAVCYFAAA
Ga0066903_1082598942	3300005764	Tropical Forest Soil	VNKLCALAAAVFVAQAGNALAQEQQSFKTIMGKGYEIKNVTFARGEATENREIVLVT
Ga0075365_108247472	3300006038	Populus Endosphere	VKQLYALAVACIAIAGARDARAQEQQSFKTIIGKGYEIKSVTFARGDTTDNREIFVVTLQKDKSVAVCYFAA
Ga0075365_110719672	3300006038	Populus Endosphere	VKKLFALAVACITIAGARDARAQEQQSFRTVMGKGYEIKSVTFARGDTTDNREIFVVTLQKDKSVAVCYFAA
Ga0075369_106484351	3300006186	Populus Endosphere	VKKLFALAVACITIAGARDARAQEQQSFRTVMGKGYEIKSVTFARGDTTDNREIFVVTLQKD
Ga0075421_1023125271	3300006845	Populus Rhizosphere	VTKLCAFAVALLAVAQVPPARAQEQQSFKTIMGKGYEIKTVTFARGESTDNREIF
Ga0099828_113140671	3300009089	Vadose Zone Soil	VKIRLALAVALLAVAFVPAGMAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFV
Ga0126380_118495762	3300010043	Tropical Forest Soil	VNKLCALAAALLLAQAGNGLAQEQQSFKSIIGKGYEIKSVTFARGEATENREIFLVTL
Ga0126382_124058801	3300010047	Tropical Forest Soil	VRKLCALAAALVVAEAGNGLAQEQQSFKTIMGKGYEIKNVTFARGEATENREIV
Ga0126373_106456803	3300010048	Tropical Forest Soil	VNKLCALAATLLVAQAGNGFAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFLVTLQK
Ga0126372_105635811	3300010360	Tropical Forest Soil	VKKPCALAATLLAIASFAAGGPTANAQEQQSFKTIIGKGYEIKGVTFARGEATENREIFLVTLQKDKSVAV
Ga0126372_111209951	3300010360	Tropical Forest Soil	VNKLCALAAAVFVAQAGNALAQEQQSFKTIMGKGYEIKNVTFARGEATENREIVLVTLQKDKSVAVCYFAAANWINLSP
Ga0126378_106776163	3300010361	Tropical Forest Soil	VNKLCALAAAVFVAQAGNALAQEPQSFKTIMGKGYEIKNVTFARGEATENREIVLVTLQKDKSVAV
Ga0126377_127546911	3300010362	Tropical Forest Soil	VKKLCALAAAVFVAGAGTGLAQEQQSFKTIMGKGYEIKNVTFARGEATENREIVLVT
Ga0126379_130698232	3300010366	Tropical Forest Soil	VNKLCALAAGLLVAQAGNGFAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAA
Ga0137387_113149841	3300012349	Vadose Zone Soil	VNKSCALAVALIAFAGHGLAQEQQSFKTIMGKGYEIKSVTFAKGESTENREIFVVTL
Ga0164302_106439412	3300012961	Soil	MGASIESVKRPRIAEELVKKLYALAVACIAIAGARDARTQEQQSFRTIMGKGYEIKSVTFARGEATDNREIFVVTLQKDKSVAVCYFAAA
Ga0126369_133856502	3300012971	Tropical Forest Soil	VNKLCALAAAVFVAQAGNALAQEQQSFKTIMGKGYEIKNVTFARGEATENREIVLVTLQKDKSVAVCYFAAANWI
Ga0164304_100836951	3300012986	Soil	VKQLYALAVACIAIAGARDARAQEQQSFRTIMGKGYEIKSVTFARGEATDNREIFV
Ga0132257_1043773271	3300015373	Arabidopsis Rhizosphere	VKKLCALAAALFVAQAGNGLAQEQQSFKTIMGKGYEIKNVTFARGEATENREIFLVTLQKDKSVA
Ga0182036_103406611	3300016270	Soil	VNKLCALAAALLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAV
Ga0182036_103778381	3300016270	Soil	VNKLCALAAALLVAQAVNGFAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFL
Ga0182036_115826941	3300016270	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKTIMGKGYEIKSVTFARGEATENREIFLVTLQK
Ga0182036_117469492	3300016270	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKSIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAV
Ga0182041_105484771	3300016294	Soil	VNKLCALAAALLVAQAANGFAQEQQSFKTIIGKGYEIKSVTFARGEATENREI
Ga0182035_109921792	3300016341	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKTIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAA
Ga0182035_111984272	3300016341	Soil	VNKLCALAAALLVAQAVNGFAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAA
Ga0182032_102041723	3300016357	Soil	VNKLCALAAALLVAQAANGFAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAA
Ga0182032_109593811	3300016357	Soil	VNKLCALAAVLLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAV
Ga0184605_103434052	3300018027	Groundwater Sediment	VKKLYALAVACIAIAGARDARAQEQQSFRTIMGKGYEIKSVAFARGESTDNREIFLVTLQKDKSVAVCYFAAANW
Ga0184635_101711781	3300018072	Groundwater Sediment	VRTMFAFAVALGTALASAAMAQDQQSFKTILGKGYEIKSVTFARGEATENREIFVVTL
Ga0190268_114662621	3300018466	Soil	VKKLYALAVACIAIAGARDARAQEQQSFRTIMGKGYEIKSVTFARGDTTDNLEIFLVTLQKDKSVAVCYFAAANWIN
Ga0190274_104823653	3300018476	Soil	MKKLCALAVACIAIVQAAEGIAQEQQSFKTVIGKSYEIKNVTFARGEATDNREIFVVTLQKDKSVAVCYFA
Ga0193719_104796151	3300021344	Soil	VKKLCALAVACIAIAQARDGLAQEQQSFKTIVGKGYEIKNVTFARGEATDNREIFVVT
Ga0126371_128274562	3300021560	Tropical Forest Soil	VNKLCALAAVLLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAANWINLS
Ga0207669_114275461	3300025937	Miscanthus Rhizosphere	MKKLCALAVACIAIVQAAEGIAQEQQSFKTVIGKSYEIKNVTFARGEATDNREIFVVTL
Ga0207679_106975501	3300025945	Corn Rhizosphere	VKKLCALAAACIVIAQAPDGSAQEQQSFKTIIGKGYEIKNVTFARGESTENRDIFVVTLQKDKSVAVCYF
Ga0207651_105130781	3300025960	Switchgrass Rhizosphere	MKKLCALAVACIAIVQAAEGIAQEQQSFKTVIGKSYEIKNVTFARGEATDNREIFVVT
Ga0208637_10072151	3300027401	Soil	MKKLCALAVACIAIVQAAEGIAQEQQSFKTVIGKSYEIKNVTFARGEATDNREIFVVTLQKDKSVAVCYFAAAN
Ga0209701_103762321	3300027862	Vadose Zone Soil	MVRIEEDIVKKPCALAVALFAVAAAPDGLAQEQQSFKTIIGKGYDIKSVTFAKGEATENREIFVVTL
Ga0209283_106629961	3300027875	Vadose Zone Soil	VKIRLALAVALLAVAFVPAGMAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFVVTLQ
Ga0307295_100455083	3300028708	Soil	MKKLCALAVACIAIVQAAEGIAQEQQSFKTVIGKSYEIKNVTFARGEATDNREIFVVTLQKDKSVAVCYFAAPNWI
Ga0307322_101360312	3300028710	Soil	VKKLCALAVACIAIAQARDGLAQEQQSFKTIVGKGYEIKNVTFARGEATDNREIFVVTLQ
Ga0307307_100701472	3300028718	Soil	VKKLCALAVACIAIAQARDGLAQEQQSFKTIVGKGYEIKNVTFARGEATDNREIFVVTLQKEKSV
Ga0307288_103356662	3300028778	Soil	VKKLCALAVACIAIAQARDGLAQEQQAFKAIVGKGYEIKSVTFARGEATDNREIFVVTLQKEKSVAVCYFAAA
Ga0307306_101523041	3300028782	Soil	VKKLYALAVACIAIAGARDARAQEQQSFRTIMGKGYEIKSVTFARGEATDNREIFVVTLQKDKSVAVCYFAA
Ga0247825_114199732	3300028812	Soil	MKKLCALAVACIAIVQAAEGLAQEQQSFKTVIGKSYEIKNVTFARGEATDNREIFVVTLQKDKSVAVCYFAAPN
Ga0307302_101187551	3300028814	Soil	VKKLCALAVACIAIAQARDGLAQEQQSFKTIVGKGYEIKNVTFARGEATDNREIFVVTLQKEKSVAVCYFAAAN
Ga0307302_102018681	3300028814	Soil	VKKLCALAVACIAIAQARDGLAQEQQAFKAIVGKGYEIKSVTFARGEATDNREIFVVTLQKEKSVAVCYFAA
Ga0307312_104142882	3300028828	Soil	VKKLCALAVACIAIAQARDGLAQEQQSFKTIVGKGYEIKNVTFARGEATDNREIFVVTLQKEKS
Ga0307277_101911862	3300028881	Soil	VKKLCALAVACIAIAQARDGLAQEQQSFKTIVGKGYEIKNVTFARGEATDNREIFVVTLQKEKSVAVCYFAA
Ga0307498_100034754	3300031170	Soil	VKKLCALAVACIAIAQARDGLAQEQQAFKAIVGKGYEIKSVTFARGEATDNREIFVVTLQKEKSVAV
Ga0307498_100685951	3300031170	Soil	MIRPPAAPGTMGTIEEDIVKTLVALAIASFAFAAAAGAQEQQSFKSLTGKGYEIKSVTFAKGEATQN
Ga0318516_103582651	3300031543	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKTIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSV
Ga0318541_103096961	3300031545	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKSIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAVN
Ga0318541_103172882	3300031545	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKTIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYF
Ga0318538_102948611	3300031546	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKTIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAAN
Ga0318538_104633982	3300031546	Soil	VNKLCALAAALLVAQAVNGFAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAAN
Ga0318528_105566271	3300031561	Soil	VKKLCALAAAVFVAEAGTGLAQEQQSFKTIMGKGYEIKNVTFARGEATENREIFLVTLQKDKSVAVCYF
Ga0318528_105963762	3300031561	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKSIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAVNWIN
Ga0318573_103973982	3300031564	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKTIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVC
Ga0318561_101985571	3300031679	Soil	VNKLCALAAALLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSV
Ga0318572_103042863	3300031681	Soil	VNKLCALAAALLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAVN
Ga0318572_105924291	3300031681	Soil	VNKLCALAAALLVAQAANGFAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAAN
Ga0318496_102494391	3300031713	Soil	VNKLCALAAALLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYF
Ga0318496_105148091	3300031713	Soil	VNKLCALAAALLVAQAANGFAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFLVTLQK
Ga0318501_103890121	3300031736	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKTIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCY
Ga0318537_101144111	3300031763	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKSIIGKGYEIKSVTFARGEATENREIFLVTLQK
Ga0318521_104293472	3300031770	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKSIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYF
Ga0318543_103421672	3300031777	Soil	VNKLCALAAALLVAQAVNGFAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSV
Ga0318543_105527342	3300031777	Soil	VDKVSALAIALIAFSGVALAQEQQSFKTIMGKEYEIKSVTFAKGESTENREIFVVTLQKEKSV
Ga0318508_10640173	3300031780	Soil	VDKVSALAIALIAFSGVALAQEQQSFKTIMGKGYEIKSVTFAKGESTENREIFVVT
Ga0318503_100201154	3300031794	Soil	VNKLCALAAALLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENREIFLVTLQK
Ga0318564_101689793	3300031831	Soil	VNKLCALAAALLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCY
Ga0318499_101231731	3300031832	Soil	VNKLCALAAVLLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAVN
Ga0310917_100439781	3300031833	Soil	VKKLCALAAALFIAEAGNGLAQEQQSFKTIMGKGYEIKNVTFARGEATENREIFLVT
Ga0310917_101556883	3300031833	Soil	VNKLCALAAVLLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENRE
Ga0318511_101030723	3300031845	Soil	VDKVSALAIALIAFSGVALAQEQQSFKTIMGKGYEIKSVTFAKGESTENREIFVVTLQKEKSVAVCY
Ga0318495_103277401	3300031860	Soil	VNKLCALAAALLVAQAVNGFAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVC
Ga0306919_105857782	3300031879	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKTIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAV
Ga0306923_116376312	3300031910	Soil	VNKLCALAAALLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENRE
Ga0310913_105294571	3300031945	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKTIMGKGYEIKSVTFARGEATENREIFLVTL
Ga0310910_105042023	3300031946	Soil	VNKLCALAAALLVAQAVNGFAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAANWIN
Ga0306926_119189132	3300031954	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKSIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVC
Ga0318507_101266833	3300032025	Soil	VNKLCALAAALLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVC
Ga0318559_103047242	3300032039	Soil	VNKLCALAAALLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFAAVNWIN
Ga0318533_109473242	3300032059	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKSIIGKGYEIKSVTFARGEATENREIFLVTLQKDKSV
Ga0318533_109995812	3300032059	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKTIMGKGYEIKSVTFARGEATENREIFLVTLQ
Ga0318510_100266241	3300032064	Soil	VNKLCALAAALLVAQAVNGFAQEQQSFKTIIGKGYEIKSVTFARGEATENREIFLVTLQK
Ga0318513_100991611	3300032065	Soil	VNKLCALAAALLIAQAGNGFAQEQQSFKSIMGKGYEIKSVTFARGEATENREIFLVTLQKDKSVAVCYFA
Ga0318514_100602691	3300032066	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKTIMGKGYEIKSVTFARGEATENREIFLVTLQKDKS
Ga0318577_101972793	3300032091	Soil	VNKLCALAAALLVAQAGNGLAQEQQSFKTIMGKGYEIKSVTFARGEATENREIFLVTLQKDK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F095750

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences