NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F095725

Metagenome Family F095725

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095725
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 35 residues
Representative Sequence MRAEHILIPLALLNLLALSLGILFNILASFLPIAY
Number of Associated Samples 75
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 93.33 %
% of genes near scaffold ends (potentially truncated) 5.71 %
% of genes from short scaffolds (< 2000 bps) 77.14 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.143 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(19.048 % of family members)
Environment Ontology (ENVO) Unclassified
(35.238 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(58.095 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 42.86%    β-sheet: 0.00%    Coil/Unstructured: 57.14%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF09678Caa3_CtaG 44.76
PF13442Cytochrome_CBB3 22.86
PF09828Chrome_Resist 2.86
PF13424TPR_12 1.90
PF08402TOBE_2 0.95
PF00115COX1 0.95
PF00528BPD_transp_1 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.14 %
UnclassifiedrootN/A2.86 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000033|ICChiseqgaiiDRAFT_c0790596All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c0791651All Organisms → cellular organisms → Bacteria1772Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c2076985All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium817Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101175769All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101213793All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium719Open in IMG/M
3300000955|JGI1027J12803_104790391All Organisms → cellular organisms → Bacteria733Open in IMG/M
3300000956|JGI10216J12902_100960632All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2094Open in IMG/M
3300002912|JGI25386J43895_10160035All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales563Open in IMG/M
3300005332|Ga0066388_108372770All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium515Open in IMG/M
3300005540|Ga0066697_10024685All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3289Open in IMG/M
3300005540|Ga0066697_10292073All Organisms → cellular organisms → Bacteria → Proteobacteria960Open in IMG/M
3300005552|Ga0066701_10238299All Organisms → cellular organisms → Bacteria → Proteobacteria1124Open in IMG/M
3300005552|Ga0066701_10325111All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales954Open in IMG/M
3300005555|Ga0066692_10261744All Organisms → cellular organisms → Bacteria → Proteobacteria1093Open in IMG/M
3300005555|Ga0066692_10920833All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300005558|Ga0066698_10068652All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae2281Open in IMG/M
3300005575|Ga0066702_10329750All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae929Open in IMG/M
3300005576|Ga0066708_10137660All Organisms → cellular organisms → Bacteria → Proteobacteria1489Open in IMG/M
3300005713|Ga0066905_100071832All Organisms → cellular organisms → Bacteria2231Open in IMG/M
3300005713|Ga0066905_100108875All Organisms → cellular organisms → Bacteria → Proteobacteria1902Open in IMG/M
3300005713|Ga0066905_100172311All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia pickettii1586Open in IMG/M
3300005713|Ga0066905_100607551All Organisms → cellular organisms → Bacteria → Proteobacteria926Open in IMG/M
3300005713|Ga0066905_100638724All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia pickettii906Open in IMG/M
3300005764|Ga0066903_100025116All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae6529Open in IMG/M
3300005764|Ga0066903_100069834All Organisms → cellular organisms → Bacteria → Proteobacteria4483Open in IMG/M
3300005764|Ga0066903_101494728All Organisms → cellular organisms → Bacteria → Proteobacteria1275Open in IMG/M
3300005764|Ga0066903_102345544All Organisms → cellular organisms → Bacteria → Proteobacteria1031Open in IMG/M
3300005844|Ga0068862_100241058All Organisms → cellular organisms → Bacteria → Proteobacteria1644Open in IMG/M
3300006034|Ga0066656_10272272All Organisms → cellular organisms → Bacteria → Proteobacteria1090Open in IMG/M
3300006196|Ga0075422_10019487All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia pickettii2295Open in IMG/M
3300006794|Ga0066658_10128275All Organisms → cellular organisms → Bacteria → Proteobacteria1250Open in IMG/M
3300006796|Ga0066665_10106106All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia pickettii2069Open in IMG/M
3300006852|Ga0075433_10417824All Organisms → cellular organisms → Bacteria → Proteobacteria1183Open in IMG/M
3300006852|Ga0075433_10782569All Organisms → cellular organisms → Bacteria834Open in IMG/M
3300007076|Ga0075435_100022834All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4830Open in IMG/M
3300007255|Ga0099791_10053734All Organisms → cellular organisms → Bacteria → Proteobacteria1807Open in IMG/M
3300007255|Ga0099791_10504194All Organisms → cellular organisms → Bacteria588Open in IMG/M
3300007258|Ga0099793_10174464All Organisms → cellular organisms → Bacteria1025Open in IMG/M
3300009038|Ga0099829_10337118All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1240Open in IMG/M
3300009137|Ga0066709_101231295All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1101Open in IMG/M
3300009157|Ga0105092_10278568All Organisms → cellular organisms → Bacteria942Open in IMG/M
3300009162|Ga0075423_10018321All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria6898Open in IMG/M
3300009610|Ga0105340_1032033All Organisms → cellular organisms → Bacteria → Proteobacteria2043Open in IMG/M
3300009803|Ga0105065_1038656All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium640Open in IMG/M
3300010043|Ga0126380_10398916All Organisms → cellular organisms → Bacteria1021Open in IMG/M
3300010043|Ga0126380_10511378All Organisms → cellular organisms → Bacteria924Open in IMG/M
3300010046|Ga0126384_10128893All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1917Open in IMG/M
3300010046|Ga0126384_11372119All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria658Open in IMG/M
3300010047|Ga0126382_10571315All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium924Open in IMG/M
3300010047|Ga0126382_11775991All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300010304|Ga0134088_10687763Not Available513Open in IMG/M
3300010336|Ga0134071_10030082All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2363Open in IMG/M
3300010336|Ga0134071_10093866All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1419Open in IMG/M
3300010358|Ga0126370_11436046All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300010359|Ga0126376_10256992All Organisms → cellular organisms → Bacteria1490Open in IMG/M
3300010359|Ga0126376_11937487All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300010360|Ga0126372_10765719All Organisms → cellular organisms → Bacteria952Open in IMG/M
3300010361|Ga0126378_10186949All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2141Open in IMG/M
3300010362|Ga0126377_10086093All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2833Open in IMG/M
3300010362|Ga0126377_10496621All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1251Open in IMG/M
3300010362|Ga0126377_10856298All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium970Open in IMG/M
3300010376|Ga0126381_104439510All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300011270|Ga0137391_10287322All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1420Open in IMG/M
3300012096|Ga0137389_10434763All Organisms → cellular organisms → Bacteria1123Open in IMG/M
3300012199|Ga0137383_11135656All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300012204|Ga0137374_10179801All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1848Open in IMG/M
3300012349|Ga0137387_10009885All Organisms → cellular organisms → Bacteria → Proteobacteria5557Open in IMG/M
3300012355|Ga0137369_10094884All Organisms → cellular organisms → Bacteria → Proteobacteria2463Open in IMG/M
3300012582|Ga0137358_10067304All Organisms → cellular organisms → Bacteria2402Open in IMG/M
3300012582|Ga0137358_10492413All Organisms → cellular organisms → Bacteria826Open in IMG/M
3300012685|Ga0137397_10845212All Organisms → cellular organisms → Bacteria679Open in IMG/M
3300012896|Ga0157303_10270833All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300012922|Ga0137394_10415633All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1146Open in IMG/M
3300012925|Ga0137419_11653511Not Available545Open in IMG/M
3300012929|Ga0137404_10015794All Organisms → cellular organisms → Bacteria → Proteobacteria5344Open in IMG/M
3300012930|Ga0137407_10510537All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1123Open in IMG/M
3300013297|Ga0157378_11030653All Organisms → cellular organisms → Bacteria → Proteobacteria858Open in IMG/M
3300015241|Ga0137418_10419061All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1088Open in IMG/M
3300015245|Ga0137409_10154983All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria2093Open in IMG/M
3300015371|Ga0132258_13190876All Organisms → cellular organisms → Bacteria1131Open in IMG/M
3300018431|Ga0066655_10245723All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1139Open in IMG/M
3300018431|Ga0066655_11003219All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300018433|Ga0066667_10012370All Organisms → cellular organisms → Bacteria → Proteobacteria4184Open in IMG/M
3300018468|Ga0066662_10336698All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1290Open in IMG/M
3300019789|Ga0137408_1036557All Organisms → cellular organisms → Bacteria → Proteobacteria4110Open in IMG/M
3300025910|Ga0207684_10012263All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales7462Open in IMG/M
3300025922|Ga0207646_10139347All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2184Open in IMG/M
3300027527|Ga0209684_1007424All Organisms → cellular organisms → Bacteria1791Open in IMG/M
3300027646|Ga0209466_1028798All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1142Open in IMG/M
3300027681|Ga0208991_1246467All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300027748|Ga0209689_1069001All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1908Open in IMG/M
3300027873|Ga0209814_10063100All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1553Open in IMG/M
3300027874|Ga0209465_10168689Not Available1089Open in IMG/M
3300027874|Ga0209465_10338108All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium754Open in IMG/M
3300027874|Ga0209465_10445463All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300027880|Ga0209481_10403156All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300031544|Ga0318534_10000513All Organisms → cellular organisms → Bacteria → Proteobacteria13146Open in IMG/M
3300031544|Ga0318534_10152353All Organisms → cellular organisms → Bacteria1334Open in IMG/M
3300031720|Ga0307469_10611715All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium975Open in IMG/M
3300031720|Ga0307469_10813161All Organisms → cellular organisms → Bacteria858Open in IMG/M
3300031720|Ga0307469_11262059All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300031720|Ga0307469_11803850All Organisms → cellular organisms → Bacteria591Open in IMG/M
3300031782|Ga0318552_10613634All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300031820|Ga0307473_10209529All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1164Open in IMG/M
3300032180|Ga0307471_101128090All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium949Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil19.05%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil19.05%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil14.29%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil14.29%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere6.67%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.71%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.71%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.86%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.90%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.95%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.95%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.95%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.95%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.95%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.95%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.95%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002912Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cmEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300009803Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027527Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027646Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027681Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiDRAFT_079059633300000033SoilMRAEHILIPLALLNLLALTLGIFFNVLANFIPIAY*
ICChiseqgaiiDRAFT_079165143300000033SoilMRAEHILIPLALLNLVALILGILFNAFASFLGIT*
ICChiseqgaiiDRAFT_207698533300000033SoilMRAERILIPLALLNLFTLVLGVLFNLLADLLGIT*
INPhiseqgaiiFebDRAFT_10117576933300000364SoilMRAERILITLALLNLLALSLGILFNILANFLPIAY*
INPhiseqgaiiFebDRAFT_10121379323300000364SoilMRAEHVLIPLALVNLFTLTLGLLFNAFASFLGIT*
JGI1027J12803_10479039133300000955SoilMRAEHVLIPLALLNLFTLTLGLLFNAFASFLGIT*
JGI10216J12902_10096063223300000956SoilMRAEHILIPLALLNLVALILGILFNTFASFLGIT*
JGI25386J43895_1016003533300002912Grasslands SoilMRAERILIPLALLNLVVLILGVVFNIVADLVGITSVSTIERV
Ga0066388_10837277023300005332Tropical Forest SoilPVGAEMRAEKILIVLVLLNLLALSLGVLFNILAHFLPLAY*
Ga0066697_1002468563300005540SoilMRAEHILIPLALLNLLALILGILFNVLASFLPIAY*
Ga0066697_1029207343300005540SoilVRAERILITLALLNLLALSLGILFNILANYLPIAY*
Ga0066701_1023829923300005552SoilMRAERILIPLALLNLAALILGVVYNLVADLLGLP*
Ga0066701_1032511143300005552SoilMRAERFLIPLALLNLAALILGILYNILASLLALP*
Ga0066692_1026174433300005555SoilMRAEHILIPLALLNFLALVLGILFNVLASFLPIAY*
Ga0066692_1092083333300005555SoilMRVERILIPLAFLNLVVLILGVVFNIVADLLGIT*
Ga0066698_1006865223300005558SoilMRAERILIPLALLNLVALILGVVYNLVADFLGLP*
Ga0066702_1032975013300005575SoilMRAEYILIPLALLNLLALSLGILFNVLASFLPIAY*
Ga0066708_1013766043300005576SoilVRAERILITLALLNLLALSLGILFNILASFLPIAY*
Ga0066905_10007183233300005713Tropical Forest SoilMRAEKILIVLALLNLLALSLGVLFNILAHFLPIAR*
Ga0066905_10010887543300005713Tropical Forest SoilVRAERILIVLALLNLVTLSLGVLFNILANFLPIAY*
Ga0066905_10017231133300005713Tropical Forest SoilMRAERILIPLALLNLLTLVLGVLFNLVADLLGIT*
Ga0066905_10060755133300005713Tropical Forest SoilMRAERILIPLALLNLLALVLGVLFNLVADLLGIT*
Ga0066905_10063872413300005713Tropical Forest SoilMRAEHILIPLALLNLLALTLGILFNVLANFLPIAY*
Ga0066903_10002511643300005764Tropical Forest SoilMRAEKILIVLVLLNLLALSLGVLFNILAHFLPLAY*
Ga0066903_10006983423300005764Tropical Forest SoilMRAEKILIVLALLNLLALSLGVLFNILAHFLPIAY*
Ga0066903_10149472833300005764Tropical Forest SoilMRAERILIPLALLNILTLVLGVLFNLVADLLGIT*
Ga0066903_10234554423300005764Tropical Forest SoilVRAERILIILALLNLLALSLGVMFNILANFLPIAY*
Ga0068862_10024105823300005844Switchgrass RhizosphereMRAEHILIPLALLNLFTLILGLLFNVFASYLGIT*
Ga0066656_1027227233300006034SoilMRAEHILIPLALLNLLALVLGILFNVLASFLPIAY*
Ga0075422_1001948743300006196Populus RhizosphereMRAEHVLIPLALLNLLALTLGIFFNVLANFIPIAY*
Ga0066658_1012827533300006794SoilMRAEHILIPLALLNLLALILGILFNLLASFLPIAY*
Ga0066665_1010610633300006796SoilMRAEYILIPLALLNLLALVLGILFNVLASFLPIAY*
Ga0075433_1041782443300006852Populus RhizosphereLRAEHILIPLALLNLLTLILGVLFNAFASFFGIT*
Ga0075433_1078256933300006852Populus RhizosphereMRAEHILIPLALLNLLALTLGIFFNVLASFIPIAY*
Ga0075435_10002283443300007076Populus RhizosphereLRAEHILIPLALLNLLTLVLGVLFNAFASFFGIT*
Ga0099791_1005373443300007255Vadose Zone SoilMRAEHILIPLALLNLLALGLGILFNILANFLPIAY*
Ga0099791_1050419433300007255Vadose Zone SoilMRAEHILIPLALLNLLALILGILFNVLASFLPIPY*
Ga0099793_1017446433300007258Vadose Zone SoilMRAEHILIPLALLNLLALSLGILFNILASFLPIAY*
Ga0099829_1033711813300009038Vadose Zone SoilMRAERILIPLALLNLVALILGVVYNIVADLLGLT*
Ga0066709_10123129523300009137Grasslands SoilMRAERILIPLALLNLVALIRGVVYNIVADFLGLP*
Ga0105092_1027856833300009157Freshwater SedimentMRAEHILIPLALLNLLALILGVLFNFFASALGIT*
Ga0075423_1001832173300009162Populus RhizosphereMRAEHILIPLALLNLFALILGILFNAFAGLLGIS*
Ga0105340_103203353300009610SoilMRAERILISLAWLNLVALILGVLFNLFADLMGIT*
Ga0105065_103865643300009803Groundwater SandMRAERILIPLALLNLVVLILGVVFNIVADLLGIT*
Ga0126380_1039891643300010043Tropical Forest SoilVRAERILIVLALLNLLALSLGVLFNILANFLPIAY*
Ga0126380_1051137823300010043Tropical Forest SoilMRAEKILIVLALVNLLALSLGVLFNILAHFLPIAY*
Ga0126384_1012889343300010046Tropical Forest SoilMRAERILIPLALLNLVALVLGVLFNLVADLLGIT*
Ga0126384_1137211923300010046Tropical Forest SoilMRAEKILIVLALLNLLALSLGALFNILAHFVPIAY*
Ga0126382_1057131533300010047Tropical Forest SoilMRAERILISLALLNLLALVLGVLFNLVADLLGIT*
Ga0126382_1177599133300010047Tropical Forest SoilVRAERILITLALLNLLALTLGIFFNVLANFLPIAY*
Ga0134088_1068776333300010304Grasslands SoilMRAERILIPLALLNLAALILGVVYNLVADFLGLP*
Ga0134071_1003008233300010336Grasslands SoilMRAERILIPLALLNLVALILGVVYNIVADFLGLP*
Ga0134071_1009386633300010336Grasslands SoilMRAERILIPLALLNLVALILGVVFNIVADLLGIT*
Ga0126370_1143604623300010358Tropical Forest SoilMRAEKILIVLALLNLLALSLGVLFNILARFLPIAY*
Ga0126376_1025699243300010359Tropical Forest SoilMRAKRILIPLALLNLFTLVLGVLFNLLADLLGIT*
Ga0126376_1193748713300010359Tropical Forest SoilPAVKVERILIPLALLNLAVLALEGLYQLVRTLLGH*
Ga0126372_1076571913300010360Tropical Forest SoilVRAERILIVLALLNLLALSLGVMFNILANFLPIAY*
Ga0126378_1018694923300010361Tropical Forest SoilMRAEKILIVLVLLNLLALSLGVLFNILAHFLPIAY*
Ga0126377_1008609343300010362Tropical Forest SoilVRAERILIVLALLNLVTLSLGILFNILANFLPIAY*
Ga0126377_1049662113300010362Tropical Forest SoilPRCRSVGAGVRAERILIVLALLNLVTLSLGVLFNILANFLPIAY*
Ga0126377_1085629833300010362Tropical Forest SoilMRAEHILIPLALLNLLALVLGVLFNLVADLLGIT*
Ga0126381_10443951023300010376Tropical Forest SoilVRAERILIILALLNLLALSLGVLFNILAHFLPIAY*
Ga0137391_1028732223300011270Vadose Zone SoilMRAERILIPLALLNLVVLILGVVFNIVADLVGIT*
Ga0137389_1043476333300012096Vadose Zone SoilMRAEHILIPLALLNLLALILGILFNVLASFLPIS*
Ga0137383_1113565613300012199Vadose Zone SoilMRAEHILIPLALLNLLTLLLGVLFNAFASFLGIT*
Ga0137374_1017980123300012204Vadose Zone SoilMRAERILIPLALLNLVALIMGVVYNIVADFLGLP*
Ga0137387_1000988563300012349Vadose Zone SoilMRAERILIPLALLNLVALILGVVYNIFADFLGLP*
Ga0137369_1009488433300012355Vadose Zone SoilMRAERILIPLALLNLVALIMGVVYNLVANLLGLP*
Ga0137358_1006730443300012582Vadose Zone SoilMRAEHILIPLALLNLLALSLGILFNILANFLPIAY*
Ga0137358_1049241333300012582Vadose Zone SoilMRAEHILIPLALLNLLALILGIMFNVLASFLPIPY*
Ga0137397_1084521223300012685Vadose Zone SoilVRAEHILIPLALLNLLALVLGILFNVLASFLPIAY*
Ga0157303_1027083333300012896SoilMRAEHVLIPLALLNLFTLLLGLLFNVFASYLGIT*
Ga0137394_1041563333300012922Vadose Zone SoilVRAEHILIPLALLNLLALILGILFNVLASFLPIAY*
Ga0137419_1165351133300012925Vadose Zone SoilMRVERILIPLALLNLLALGLGVLFNLVADLLGIT*
Ga0137404_1001579443300012929Vadose Zone SoilMRAERILIPLALLNLLALVLGVIFNLVADLLGIT*
Ga0137407_1051053733300012930Vadose Zone SoilMRAERILIPLALLNLVALILGVVYNLVADLLGLP*
Ga0157378_1103065323300013297Miscanthus RhizosphereMRAEQILIPLALLNLFTLILGLLFNVFASYLGIT*
Ga0137418_1041906133300015241Vadose Zone SoilMRVERILIPLALLNLLALVLGVLFNLVADLLGIT*
Ga0137409_1015498313300015245Vadose Zone SoilMRAERILIPLALLNLVVLVLGVVFNIVADLLGIT*
Ga0132258_1319087623300015371Arabidopsis RhizosphereLRAEHILIPLALLNLLTLILGVLFNAFASFLGIT*
Ga0066655_1024572333300018431Grasslands SoilMRAEHILIPLALLNLLALILGILFNLLASFLPIAY
Ga0066655_1100321923300018431Grasslands SoilVRAERILITLALLNLLALSLGILFNILANYLPIAY
Ga0066667_1001237063300018433Grasslands SoilVRAERILITLALLNLLALSLGILFNILASFLPIAY
Ga0066662_1033669833300018468Grasslands SoilMRAEHILIPLALLNLLALILGILFNVLASFLPIAY
Ga0137408_103655723300019789Vadose Zone SoilMRAEHILIPLALLNLLALILGILFNVLASFLPIPY
Ga0207684_1001226363300025910Corn, Switchgrass And Miscanthus RhizosphereMRAEHILIPLALLNLLALVLGILFNVLASFLPIAY
Ga0207646_1013934743300025922Corn, Switchgrass And Miscanthus RhizosphereMWAEHILIPLALLNLLALVLGILFNVLASFLPIAY
Ga0209684_100742423300027527Tropical Forest SoilMRAEKILIVLALLNLLALSLGVLFNILAHFLPLAY
Ga0209466_102879843300027646Tropical Forest SoilVRAERILIVLALLNLVTLSLGVLFNILANFLPIAY
Ga0208991_124646723300027681Forest SoilMRAEHILIPLALLNLLALSLGILFNILASFLPIAY
Ga0209689_106900123300027748SoilMRAEYILIPLALLNLLALVLGILFNVLASFLPIAY
Ga0209814_1006310043300027873Populus RhizosphereMRAEHILIPLALLNLLALTLGIFFNVLANFIPIAY
Ga0209465_1016868923300027874Tropical Forest SoilAEMRAEKILIVLVLLNLLALSLGVLFNILAHFLPLAY
Ga0209465_1033810823300027874Tropical Forest SoilVRAERILIILALLNLLALSLGVMFNILANFLPIAY
Ga0209465_1044546323300027874Tropical Forest SoilMRAEKILIVLALLNLLALSLGVLFNILAHFLPIAY
Ga0209481_1040315623300027880Populus RhizosphereMRAEHVLIPLALLNLLALTLGIFFNVLANFIPIAY
Ga0318534_10000513113300031544SoilMRAEKILIVLVLLNLLALSLGVLFNILAHFLPLAY
Ga0318534_1015235323300031544SoilMWAEKILIVLALLNLLALSLGVLFNIVAHFLAIAY
Ga0307469_1061171543300031720Hardwood Forest SoilMRAERILITLALLNLLALGLGILFNILANFLPIAY
Ga0307469_1081316133300031720Hardwood Forest SoilVRAERILIPLALLNLLALVLGILFNVLASFLPIAY
Ga0307469_1126205933300031720Hardwood Forest SoilMRAEHILIPLALLNLLALSLGVLFNILANFLPIAY
Ga0307469_1180385033300031720Hardwood Forest SoilMRAEHILIPLALLNLLALGLGILFNILANFLPIAY
Ga0318552_1061363413300031782SoilMRAEKILIVLVLLNLLALSLGVLFNIVAHFLAIAY
Ga0307473_1020952933300031820Hardwood Forest SoilVRAERILIVLALLNLLALSLGILFNILASFLPIAY
Ga0307471_10112809033300032180Hardwood Forest SoilMRAEHILIPLALLNLLALSLGILFNILANFLPIAY

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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