Metagenome / Metatranscriptome Family F095661

Overview

Basic Information

• Family ID: F095661
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 105
• Average Sequence Length: 44 residues
• Representative Sequence: RPRYRQSLGHNHSSQLLSVGTPDTSVSRELVDFIERTVKR
• Number of Associated Samples: 91
• Number of Associated Scaffolds: 105

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.95 %
• % of genes near scaffold ends (potentially truncated): 98.10 %
• % of genes from short scaffolds (< 2000 bps): 97.14 %
• Associated GOLD sequencing projects: 84
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (90.476 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.429 % of family members)
• Environment Ontology (ENVO): Unclassified (40.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (61.905 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 30.88%
  β-sheet: 0.00%
  Coil/Unstructured: 69.12%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF07992	Pyr_redox_2	15.24
PF08241	Methyltransf_11	4.76
PF12543	DUF3738	2.86
PF00593	TonB_dep_Rec	2.86
PF01522	Polysacc_deac_1	1.90
PF01053	Cys_Met_Meta_PP	1.90
PF09594	GT87	0.95
PF00069	Pkinase	0.95
PF00753	Lactamase_B	0.95
PF10282	Lactonase	0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.81
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	1.90
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	1.90
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	1.90
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	1.90
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	1.90
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	1.90
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	1.90
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	1.90
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	1.90

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.48 %
Unclassified	root	N/A	9.52 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.48 %
Unclassified	root	N/A	9.52 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.48 %
Unclassified	root	N/A	9.52 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	27.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.19 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.86 %
Unclassified	root	N/A	9.52 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	9.52 %
Unclassified	root	N/A	9.52 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	18.10 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.14 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.90 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.95 %
Unclassified	root	N/A	9.52 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.95 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	3.81 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	4.76 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.14 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.81 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.95 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.95 %
Unclassified	root	N/A	9.52 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	3.81 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.14 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Dokdonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella	0.95 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.81 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.95 %
Unclassified	root	N/A	9.52 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	3.81 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.14 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Dokdonella immobilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella immobilis	0.95 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.81 %
Unclassified	root	N/A	9.52 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	0.95 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	3.81 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.14 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Dokdonella immobilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella immobilis	0.95 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.81 %
Sphingomonas sp. LH128	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. LH128	0.95 %
Unclassified	root	N/A	9.52 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	3.81 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300004463|Ga0063356_100477959	All Organisms → cellular organisms → Bacteria	1638
3300005093|Ga0062594_102009799	All Organisms → cellular organisms → Bacteria	618
3300005290|Ga0065712_10018594	All Organisms → cellular organisms → Bacteria	1736
3300005293|Ga0065715_10028784	All Organisms → cellular organisms → Bacteria → Proteobacteria	1946
3300005293|Ga0065715_10933797	All Organisms → cellular organisms → Bacteria → Proteobacteria	563
3300005295|Ga0065707_10531844	All Organisms → cellular organisms → Bacteria → Proteobacteria	734
3300005328|Ga0070676_11611456	All Organisms → cellular organisms → Bacteria	502
3300005343|Ga0070687_100396806	All Organisms → cellular organisms → Bacteria → Acidobacteria	903
3300005344|Ga0070661_101198886	All Organisms → cellular organisms → Bacteria	635
3300005353|Ga0070669_101825418	All Organisms → cellular organisms → Bacteria → Proteobacteria	530

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.38%
Host-Associated	Host-Associated	47.62%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	15.24%
Plants	Host-Associated → Plants	47.62%
Terrestrial	Environmental → Terrestrial	37.14%

Category

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	3.81%
Freshwater	Environmental → Aquatic → Freshwater	1.90%
Marine	Environmental → Aquatic → Marine	7.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.76%
Roots	Host-Associated → Plants → Roots	0.95%
Sediment	Environmental → Aquatic → Sediment	5.71%
Soil	Environmental → Terrestrial → Soil	33.33%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.19%
Loam	Environmental → Terrestrial → Soil → Loam	6.67%
Oceanic	Environmental → Aquatic → Marine → Oceanic	7.62%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.81%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.43%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.76%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.57%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.95%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	7.62%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.76%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.81%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.95%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	7.62%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.95%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.90%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.95%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.57%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.95%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0063356_1004779591	3300004463	Arabidopsis Thaliana Rhizosphere	LVEKHGARPRYKQSPGHNHSSQLLSVGTPDASVSRELVDFIERTVRR*
Ga0062594_1020097993	3300005093	Soil	PRYTQSPGHNHSSQLWSLGTSDTSVSRELVDFIERTVKR*
Ga0065712_100185941	3300005290	Miscanthus Rhizosphere	HKARPRYKQSPGHNHSSQLLSLGTPDTSVSREMVDFIERTITR*
Ga0065715_100287841	3300005293	Miscanthus Rhizosphere	GARPRYKQSPGHNHSSQLLSVGTADTTVSRELVDFIERTVKR*
Ga0065715_109337972	3300005293	Miscanthus Rhizosphere	AAVYDELVEKHKARPRYKQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTVTR*
Ga0065707_105318443	3300005295	Switchgrass Rhizosphere	LFKELLEKQARPRYRQSLGHNHVSQVLSVGTVDTSMSREVLDFIDRTIRR*
Ga0070676_116114561	3300005328	Miscanthus Rhizosphere	PRYRQSLGHNHVSQLLSIGTVDTSVSREILDFIDRVIHPVK*
Ga0070687_1003968061	3300005343	Switchgrass Rhizosphere	ARPRYRQSLGHNHSSQLLSFGTGDTSVSRELVDFIETVIKR*
Ga0070661_1011988861	3300005344	Corn Rhizosphere	VMPRYRQSLGHNHVSQLLSIGTVDTSISREILDFIDRVIHPVK*
Ga0070669_1018254181	3300005353	Switchgrass Rhizosphere	AVYDELVEKHKARPRYKQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTVTR*
Ga0070674_1019241671	3300005356	Miscanthus Rhizosphere	ARPRYRQSLGHNHSSQLLSVGTPDTSVSRELVDFIERTVKH*
Ga0070673_1004810982	3300005364	Switchgrass Rhizosphere	YRQSLGHNHVSQLLSLGTVDTSVSREILDFIDRVIHPVK*
Ga0070688_1007436801	3300005365	Switchgrass Rhizosphere	ELIDKHGARPRYRQSLGHNHSSQLLSVGTPDTSVSRELVDFIERTVKR*
Ga0070701_103253981	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	RYRQSLGHNHVSQLLSLGTVDTSVSREILDFIDRVIHPVK*
Ga0070705_1014223652	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	EKNARPRYRQSLGHNHVSQLLSVGTADTSVSREVLDFIDRTIRR*
Ga0070685_100659742	3300005466	Switchgrass Rhizosphere	VMPRYRQSLGHNHVSQLLSIGTVDTSVSREILDFIDRVIHPVK*
Ga0070664_1023395952	3300005564	Corn Rhizosphere	YRQSLGHNHVSQLLSIGTVDTSVSREILDFIDRVVHPVK*
Ga0068857_1003163532	3300005577	Corn Rhizosphere	PRYRQSLGHNHVSQLLSIGTVDTSVSREILDFIDRVVHPVK*
Ga0068852_1013714081	3300005616	Corn Rhizosphere	KQSPGHNHSSQLLSVGTADTTVSRELVDFIERTVKR*
Ga0068866_103696402	3300005718	Miscanthus Rhizosphere	VEKHKARPRYKQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTVTR*
Ga0068866_109644781	3300005718	Miscanthus Rhizosphere	SLGHNHVSQLLSVGTADTSISREILDFIDRVTTG*
Ga0068870_113165751	3300005840	Miscanthus Rhizosphere	EHGVVPRYLQSLGHNHSSQLLSVGTADRSVSATIVDFIERTVHSR*
Ga0097621_1004092981	3300006237	Miscanthus Rhizosphere	RQSLGHNHVSQLLSIGTVDTSVSREILDFIDRVIHPVK*
Ga0075430_1002352463	3300006846	Populus Rhizosphere	SLGHNHVSQLLSVGTADTSVSREILDFVEQVTALSHTP*
Ga0068865_1006928621	3300006881	Miscanthus Rhizosphere	FSELVEKHHVKPRYRQSLGHNHVSQLLSLGTVDTSVSREILDFIDRVIHPVK*
Ga0079218_118689691	3300007004	Agricultural Soil	PRYRQSLGHNHVSQLLSVGTADTSVSREVLDFIDRTLAR*
Ga0114950_109903902	3300009030	Deep Subsurface	FAALLEELVVGHGVMPRYKQSLGHNHTSQLLAIGTADTGVSAELVDFIERTVGR*
Ga0114949_103166352	3300009139	Deep Subsurface	LEELVVGHGVMPRYKQSLGHNHTSQLLAIGTADTGVSAVLVDFIERTVGR*
Ga0114949_113515751	3300009139	Deep Subsurface	AALLEELVVGHGVMPRYKQSLGHNHTSQLLAIGTADTGVSAELVDFIERTVGR*
Ga0114949_114515241	3300009139	Deep Subsurface	KQSLGHNHTSQLLAIGTADTGVSAVLVDFIERTVGR*
Ga0111538_103255482	3300009156	Populus Rhizosphere	FKELLEKNARPRYRQSLGHNHVSQLLSVGTADTSVTREVLDFIDRTLKTPPR*
Ga0111538_110889711	3300009156	Populus Rhizosphere	RPRYKQSPGHNHSSQLLSVGTPDTSVSRELVDFIERTVKR*
Ga0111538_111827383	3300009156	Populus Rhizosphere	FKELLEKNARPRYRQSLGHNHVSQLLSIGTVDTSVSREILDFIDRVAGH*
Ga0075423_101202064	3300009162	Populus Rhizosphere	PRYKQSPGHNHSSQLWSLGTSDTSVSRELVDFIERTVKR*
Ga0075423_117123252	3300009162	Populus Rhizosphere	QAAVYKELIDKHGARPRYRQSLGHNHSSQLLSVGTPDTSVSRELVDFIERTVKR*
Ga0105101_105962181	3300009171	Freshwater Sediment	RYPGPFAELFRELVEKHDARPRFRQSLGHTHTSQLLSIGTVDTSVSREILDFIDRIVGR*
Ga0105249_123451721	3300009553	Switchgrass Rhizosphere	SPGHNHSSQLLSVGTPDTSVSSELVDFIERTVTRAE*
Ga0134088_104744531	3300010304	Grasslands Soil	TELVEKHQARPRYRQSLGHNHVSQLLSMGTVASSVSREILDFIDRIVGR*
Ga0114947_107813822	3300011112	Deep Subsurface	LAFAALLEELVVGHGVMPRYKQSLGHNHTSQLLAIGTADTGVSGELVDFIERTIGR*
Ga0137327_11424461	3300012173	Soil	LQSLGHNHSSQLLSVGTADESVSSIIVDFIERTGSR*
Ga0150985_1060920931	3300012212	Avena Fatua Rhizosphere	VQKHGMRPRFRQSLGHNHVSQLLSVGTADTSISREILDFIDRVTTR*
Ga0137435_11045581	3300012232	Soil	ARPRYRQSLGHNHVSQLLSVGTADTSVSREILDFIDRTLRR*
Ga0137435_11730381	3300012232	Soil	HKARPRYKQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTVTR*
Ga0137370_110165641	3300012285	Vadose Zone Soil	VMPRYRQSLGHNHVSQLLSVGTSDTSVSREILDFINRVIGG*
Ga0157286_101334922	3300012908	Soil	RELVEKHGARPRYKQSPGHNHSSQLLSVGTADTTVSRELVDFIERTVKR*
Ga0157308_102404791	3300012910	Soil	AAVYNELVEKHKARPRYKQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTVKR*
Ga0163162_134193152	3300013306	Switchgrass Rhizosphere	ELVEKHRARPRYKQSPGHNHSSQLLSVGTADTSVSRELVDFIERTVTR*
Ga0157375_112385512	3300013308	Miscanthus Rhizosphere	QAAVYDELVEKHKARPRYKQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTVTR*
Ga0157380_103352821	3300014326	Switchgrass Rhizosphere	SLGHNHSSQLLSLGTADRSVSGIIVDFIERTGSR*
Ga0157376_103671931	3300014969	Miscanthus Rhizosphere	LVLKHAVMPRYRQSLGHNHVSQLLSIGTVDTSVSREILDFIDRVIHPVK*
Ga0173480_101371911	3300015200	Soil	EKHKARPRYKQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTVTR*
Ga0132255_1020768692	3300015374	Arabidopsis Rhizosphere	VEKHQARPRYKQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTVTR*
Ga0184633_100822774	3300018077	Groundwater Sediment	RYRQSLGHNHVSQLLSVGTADTSVSREILDFIDRIVRR
Ga0184612_103736972	3300018078	Groundwater Sediment	LIEKNARPRYRQSLGHNHVSQLLSVGTADTSVSREILDFIDRTLRR
Ga0190272_127232152	3300018429	Soil	FEELVIEHGVVPRYKQSLGHNHSSQLLSVGTADTSVSAEVVDFIERTSGR
Ga0190270_101706271	3300018469	Soil	ARPRYRQSLGHNHVSQLLSMGTVDTSVSREILDFIDRTLGH
Ga0190270_108278151	3300018469	Soil	HKARPRYKQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTVTR
Ga0190274_120407741	3300018476	Soil	GARPRYRQSIGHNHSSQLLSVGTPDTSVSRELVDFIERTVTR
Ga0190271_105689951	3300018481	Soil	ERHGARPRYRQSLGHNHSSQLLSVGTSDTSVSRELVDFIERTVKR
Ga0190271_123305131	3300018481	Soil	QSLGHNHSSQLLSVGTPDTSVSRELVDFIERTVKR
Ga0180117_12050231	3300019248	Groundwater Sediment	EAQLFKELLEKNARPRYRQSLGHNHVSQLLSVGTADTSVSREVLDFIDRTIRR
Ga0190264_102932901	3300019377	Soil	LYKELVEKHGARPRYPQSLGHNHVSQLLSMGTVDASVSREILDFIDRTVGR
Ga0190264_104071422	3300019377	Soil	YRQSLGHNHSSQLLSVGTADTSVSRELVDFIERTIKH
Ga0222622_102220293	3300022756	Groundwater Sediment	QSLGHNHSSQLLSVGTPDTSVSRELVDFIERVVKH
Ga0209987_103318461	3300024060	Deep Subsurface	ELVVGHGVMPRYKQSLGHNHTSQLLAIGTADTGVSAELVDFIERTVGR
Ga0209988_103123041	3300024431	Deep Subsurface	QSLGHNHTSQLLAIGTADTGVSAELVDFIERTVGR
Ga0209980_104083332	3300024516	Deep Subsurface	QSLGHNHTSQLLAIGTADTGVSAVLVDFIERTVGR
Ga0207653_104027351	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	LVQKHGMRPRFRQSLGHNHVSQLLSVGTADTSISREIVDFIDRVPAR
Ga0207643_107522692	3300025908	Miscanthus Rhizosphere	VLKHAVMPRYRQSLGHNHVSQLLSIGTVDTSVSREILDFIDRVIHPVK
Ga0207684_107593122	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	AVMPRYRQSLGHNHVSQLLSIGTVDTSVSREILDFIDRVIHPVK
Ga0207649_103965681	3300025920	Corn Rhizosphere	LKHAVMPRYRQSLGHNHVSQLLSIGTVDTSISREILDFIDRVIHPVK
Ga0207649_108749552	3300025920	Corn Rhizosphere	VLKHGVKPRYRQSLGHNHVSQLLSLGTVDTSVSREILDFIDRVIHPVK
Ga0207659_111898782	3300025926	Miscanthus Rhizosphere	GARPRYRQSLGHNHSSQLLSVGTPDTSVSRELVDFIERTVKH
Ga0207701_116938722	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	RPRYKQSPGHNHSSQLLSVGTPDTSVSRELVDFIERTVKR
Ga0207644_110098251	3300025931	Switchgrass Rhizosphere	RQSLGHNHVSQLLSVGTADTSISREILDFIDRVTAR
Ga0207706_112833812	3300025933	Corn Rhizosphere	AVYNELVEKHKARPRYRQSLGHNHSSQLLSVGTPDTSVSRELVDFIERTVRR
Ga0207669_103521961	3300025937	Miscanthus Rhizosphere	AVYDELVEKHKARPRYKQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTVTR
Ga0207704_105101362	3300025938	Miscanthus Rhizosphere	KHGVRPRYRQSLGHNHVSQLLSLGTVDTSVSREILDFIDRVIHPVK
Ga0207689_109976151	3300025942	Miscanthus Rhizosphere	LVDKHGARPRYRQSLGHNHSSQLLSVGTPDTSVSRELVDFIERTVKH
Ga0207667_113542973	3300025949	Corn Rhizosphere	RQSLGHNHVSQLLSVGTADTSISREILDFIDRMRPR
Ga0207639_108308031	3300026041	Corn Rhizosphere	KQSPGHNHSSQLLSVGTADTTVSRELVDFIERTVKR
Ga0207641_103188272	3300026088	Switchgrass Rhizosphere	KHGVMPRYRQSLGHNHVSQLLSLGTVDTSVSREILDFIDRVIHPVK
Ga0207675_1004586282	3300026118	Switchgrass Rhizosphere	PQAAVYDELVEKHKARPRYKQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTVTR
Ga0207683_103450992	3300026121	Miscanthus Rhizosphere	KQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTVKR
Ga0209818_10646852	3300027637	Agricultural Soil	PRYRQSLGHNHSSQLLSVGTPDTSVSRELVDFIERTVKR
Ga0209974_104721221	3300027876	Arabidopsis Thaliana Rhizosphere	TPRYLQSLGHNHSSQLLSLGTADRSVSGIIVDFIERTGSR
Ga0209382_101357834	3300027909	Populus Rhizosphere	RPRYRQSLGHNHSSQLLSVGTPDTSVSRELVDFIERTVKR
Ga0268265_120869931	3300028380	Switchgrass Rhizosphere	AVYDELVEKHKARPRYKQSPGHNHSSQLLSLGTPDTSVSREMVDFIERTITR
Ga0307281_101631161	3300028803	Soil	LFTELIEKNARPRYRQSLGHNHVSQLLSVGTADTSVSREILDFIDRTTRR
Ga0310888_109783261	3300031538	Soil	LVVEHGVVPRYLQSLGHNHSSQLLSVGTADRSVSGTIVDFIERTVHSR
Ga0307413_102689712	3300031824	Rhizosphere	PRYFQSLGHNHSSQLLSVGTQDQSVSGIIIDFIERTGGR
Ga0310907_103992541	3300031847	Soil	YRELIDKHGARPRYRQSLGHNHSSQLLSVGTADTSVSRELVDFIERTSTH
Ga0310900_108511752	3300031908	Soil	RELIDKHGARPRYRQSLGHNHSSQLLSVGTADTSVSRELVDFIERTAKN
Ga0307412_121059102	3300031911	Rhizosphere	GARPRYRQSLGHNHSSQLFSVGTADTSVSRELVDFIERTVKR
Ga0310903_105177381	3300032000	Soil	EKHKARPRYKQSPGHNHSSQLLSLGTPDTSVSREMVDFIERTITR
Ga0307411_118170652	3300032005	Rhizosphere	EKHGARPRYKQSPGHNHSSQLLSVGTPDTSVSRELVDFIERNVRR
Ga0310906_101852831	3300032013	Soil	PRYKQSPGHNHSSQLLSVGTADTSVSRELVDFIERTVTR
Ga0310906_104088541	3300032013	Soil	YKQSPGHNHSSQLLSVGTADTTVSRELVDFIERTVKR
Ga0310896_101081152	3300032211	Soil	LVEKHGARPRYKQSPGHNHSSQLLSVGTPDTSVSRELVDFIERTVKR
Ga0247829_109816651	3300033550	Soil	EKHKARPRYKQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTITR
Ga0247829_116187351	3300033550	Soil	AALFAELVTEHGATPRYLQSLGHNHSSQLLSVGTSDQSVSGVIVDFIERTGGR
Ga0364927_0237959_380_535	3300034148	Sediment	VYNELVEKHNGRPRYKQSPGHNHSSQLLSLGTPDTSVSRELVDFIERTITR
Ga0364929_0024427_3_143	3300034149	Sediment	LIEKNARPRYRQSLGHNHVSQLLSVGTADTSVSREILDFIDRTMRR
Ga0364943_0411601_2_142	3300034354	Sediment	LIEKNARPRYRQSLGHNHVSQLLSVGTADTSVSREILDFIDRTMGR
Ga0364941_042544_842_994	3300034417	Sediment	LFRELIEKNARPRYRQSLGHNHVSQLLSVGTADTSVSREILDFIDRTLRR