NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F095651

Metagenome / Metatranscriptome Family F095651

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F095651
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 96 residues
Representative Sequence MELNRGGVGVPLHKLASVVDEAQKFFRMLGEDVHIDNGSGVWLGCDFDNKSLNFTAEYVGPVEPAQIREFYAAFDGVTQLRRATIAQFA
Number of Associated Samples 93
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 67.96 %
% of genes near scaffold ends (potentially truncated) 94.29 %
% of genes from short scaffolds (< 2000 bps) 96.19 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (95.238 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(13.333 % of family members)
Environment Ontology (ENVO) Unclassified
(34.286 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(43.810 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 32.48%    β-sheet: 8.55%    Coil/Unstructured: 58.97%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF14559TPR_19 13.33
PF13432TPR_16 10.48
PF04733Coatomer_E 7.62
PF13414TPR_11 3.81
PF13181TPR_8 1.90
PF13371TPR_9 1.90
PF07719TPR_2 1.90
PF14714KH_dom-like 0.95
PF13428TPR_14 0.95
PF13464DUF4115 0.95
PF07676PD40 0.95
PF00515TPR_1 0.95



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms95.24 %
UnclassifiedrootN/A4.76 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001661|JGI12053J15887_10614299All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium517Open in IMG/M
3300003319|soilL2_10233710All Organisms → cellular organisms → Bacteria1535Open in IMG/M
3300004092|Ga0062389_100851916All Organisms → cellular organisms → Bacteria → Acidobacteria1093Open in IMG/M
3300004635|Ga0062388_100932272All Organisms → cellular organisms → Bacteria → Acidobacteria837Open in IMG/M
3300004635|Ga0062388_102680524All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium524Open in IMG/M
3300005176|Ga0066679_10785405All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium609Open in IMG/M
3300005179|Ga0066684_10404578All Organisms → cellular organisms → Bacteria → Acidobacteria917Open in IMG/M
3300005294|Ga0065705_11054166All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300005332|Ga0066388_101565892All Organisms → cellular organisms → Bacteria → Acidobacteria1157Open in IMG/M
3300005437|Ga0070710_10925428All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300005441|Ga0070700_101332118All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium604Open in IMG/M
3300005451|Ga0066681_10748645All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300005459|Ga0068867_101496312All Organisms → cellular organisms → Bacteria628Open in IMG/M
3300005538|Ga0070731_10576009All Organisms → cellular organisms → Bacteria749Open in IMG/M
3300005541|Ga0070733_10140404All Organisms → cellular organisms → Bacteria → Acidobacteria1563Open in IMG/M
3300005541|Ga0070733_10741751All Organisms → cellular organisms → Bacteria → Acidobacteria659Open in IMG/M
3300005542|Ga0070732_10063163All Organisms → cellular organisms → Bacteria2152Open in IMG/M
3300005555|Ga0066692_10769729All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300006237|Ga0097621_100936433All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium808Open in IMG/M
3300006358|Ga0068871_102036743All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium546Open in IMG/M
3300006794|Ga0066658_10712931All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300006797|Ga0066659_11004484All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300006954|Ga0079219_12189532All Organisms → cellular organisms → Bacteria → Acidobacteria532Open in IMG/M
3300007265|Ga0099794_10730077All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium528Open in IMG/M
3300009012|Ga0066710_102000255All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium859Open in IMG/M
3300009090|Ga0099827_11278455All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium638Open in IMG/M
3300009100|Ga0075418_12495978All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium564Open in IMG/M
3300009137|Ga0066709_101757869All Organisms → cellular organisms → Bacteria874Open in IMG/M
3300009143|Ga0099792_11208473All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium513Open in IMG/M
3300009162|Ga0075423_11709881All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium677Open in IMG/M
3300009174|Ga0105241_12353125All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium531Open in IMG/M
3300009176|Ga0105242_11632006All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium679Open in IMG/M
3300009792|Ga0126374_10925587All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium678Open in IMG/M
3300010373|Ga0134128_12219472All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium605Open in IMG/M
3300010373|Ga0134128_12329618All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium590Open in IMG/M
3300010379|Ga0136449_102219662All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium800Open in IMG/M
3300010379|Ga0136449_102982682All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium661Open in IMG/M
3300010397|Ga0134124_12910324All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii523Open in IMG/M
3300010399|Ga0134127_11047953All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium878Open in IMG/M
3300011119|Ga0105246_11354333All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium662Open in IMG/M
3300011120|Ga0150983_12054917All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium596Open in IMG/M
3300011120|Ga0150983_14766115All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium529Open in IMG/M
3300011120|Ga0150983_15465310All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium803Open in IMG/M
3300011270|Ga0137391_10955968All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium699Open in IMG/M
3300012189|Ga0137388_11545989Not Available600Open in IMG/M
3300012205|Ga0137362_11520200All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii556Open in IMG/M
3300012209|Ga0137379_11434948All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium593Open in IMG/M
3300012211|Ga0137377_10726830All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium927Open in IMG/M
3300012357|Ga0137384_10176539All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1789Open in IMG/M
3300012357|Ga0137384_11211401All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii600Open in IMG/M
3300012582|Ga0137358_11026556All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium531Open in IMG/M
3300012917|Ga0137395_10814082All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium676Open in IMG/M
3300012923|Ga0137359_11225778All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium638Open in IMG/M
3300012930|Ga0137407_12410976All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium503Open in IMG/M
3300012960|Ga0164301_10990167All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium660Open in IMG/M
3300013296|Ga0157374_12241926All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium573Open in IMG/M
3300013297|Ga0157378_12976002All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium526Open in IMG/M
3300013306|Ga0163162_12508542All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium593Open in IMG/M
3300013308|Ga0157375_13759807All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium504Open in IMG/M
3300014326|Ga0157380_11127008All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium825Open in IMG/M
3300014968|Ga0157379_12225344All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium545Open in IMG/M
3300014969|Ga0157376_11674930All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium671Open in IMG/M
3300017937|Ga0187809_10195002All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium716Open in IMG/M
3300017937|Ga0187809_10445399All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria500Open in IMG/M
3300017942|Ga0187808_10539143All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium543Open in IMG/M
3300017955|Ga0187817_10094686All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1875Open in IMG/M
3300017961|Ga0187778_10444223All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium855Open in IMG/M
3300017972|Ga0187781_10183360All Organisms → cellular organisms → Bacteria1475Open in IMG/M
3300017974|Ga0187777_10669065All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium735Open in IMG/M
3300018085|Ga0187772_10479931All Organisms → cellular organisms → Bacteria → Acidobacteria874Open in IMG/M
3300018482|Ga0066669_10988379All Organisms → cellular organisms → Bacteria → Acidobacteria759Open in IMG/M
3300020581|Ga0210399_10367546All Organisms → cellular organisms → Bacteria → Acidobacteria1201Open in IMG/M
3300021559|Ga0210409_10951844All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium733Open in IMG/M
3300022504|Ga0242642_1040081All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium704Open in IMG/M
3300025899|Ga0207642_10967550All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium547Open in IMG/M
3300025906|Ga0207699_11356920All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium526Open in IMG/M
3300025930|Ga0207701_11096416All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium660Open in IMG/M
3300025937|Ga0207669_11352927All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300025939|Ga0207665_10620494All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium845Open in IMG/M
3300025986|Ga0207658_12098199All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium514Open in IMG/M
3300027842|Ga0209580_10436192All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300027867|Ga0209167_10331548All Organisms → cellular organisms → Bacteria → Acidobacteria825Open in IMG/M
3300027905|Ga0209415_10179003All Organisms → cellular organisms → Bacteria2053Open in IMG/M
3300027986|Ga0209168_10231371All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium918Open in IMG/M
3300028776|Ga0302303_10168768All Organisms → cellular organisms → Bacteria → Acidobacteria768Open in IMG/M
3300029910|Ga0311369_10301680All Organisms → cellular organisms → Bacteria → Acidobacteria1429Open in IMG/M
3300029943|Ga0311340_11581139Not Available510Open in IMG/M
3300030057|Ga0302176_10265774All Organisms → cellular organisms → Bacteria → Acidobacteria687Open in IMG/M
3300030520|Ga0311372_11810261All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium728Open in IMG/M
3300031234|Ga0302325_10709584All Organisms → cellular organisms → Bacteria → Acidobacteria1445Open in IMG/M
3300031718|Ga0307474_11572552All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium517Open in IMG/M
3300031754|Ga0307475_11054574All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium637Open in IMG/M
3300031823|Ga0307478_10902313All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium739Open in IMG/M
3300031823|Ga0307478_11401470All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium580Open in IMG/M
3300031962|Ga0307479_10473827All Organisms → cellular organisms → Bacteria → Acidobacteria1236Open in IMG/M
3300032515|Ga0348332_10117032All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium968Open in IMG/M
3300032515|Ga0348332_11405903Not Available526Open in IMG/M
3300032783|Ga0335079_10916881All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium899Open in IMG/M
3300032783|Ga0335079_12384331All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium500Open in IMG/M
3300032805|Ga0335078_12397035All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium549Open in IMG/M
3300032828|Ga0335080_10580600All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1181Open in IMG/M
3300032828|Ga0335080_12360965All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium508Open in IMG/M
3300033158|Ga0335077_11904789All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium555Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil13.33%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil6.67%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.71%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil5.71%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa5.71%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.76%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.81%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.81%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.81%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.81%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.81%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.86%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.86%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.86%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.90%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere1.90%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.90%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.90%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.95%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.95%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.95%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.95%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil0.95%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.95%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.95%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.95%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.95%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.95%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300003319Sugarcane bulk soil Sample L2EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005204Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2EnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300017937Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022504Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028776Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1EnvironmentalOpen in IMG/M
3300029910III_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030057Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1EnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12053J15887_1061429923300001661Forest SoilMELNRGGIGVPLHKMASVVDEAQKFFRMLAADVHIGKDSGEWLGFDFDNKSLNFTAEYVGPVEADQVREFYAAF
soilL2_1023371013300003319Sugarcane Root And Bulk SoilMSRLRIRVELNRGGAGVPLHKLASVVDETQKFFRMLGEDVHIAPNSGVWLGSDFDNKSLNFTAEYVGPLQPEQIRQFYAAFDGVTQMRRST
Ga0062389_10085191623300004092Bog Forest SoilMSRLRVRVELNRGGVGVPLHKLASVVHEAQRFFDMLAEDVHISTEGGEWLGFDFDNESLNFTAEFVGPVSQDQIEAFYAAFDGTTSLRRATIAQFTQITEAIGEDELIGFGMYQSDQEPEPA
Ga0062388_10093227223300004635Bog Forest SoilMSRLRVRVELNRGGVGVPLHKLASVVHEAQRFFDMLAEDVHISTEGGEWLGFDFDNESLNFTAEFVGPVSQDQIEAFYAAFDGTTSLRRATIAQ
Ga0062388_10268052413300004635Bog Forest SoilMARLRIRVELNRGGVGIPLHKLSSVVQEAEKFFEMLAEDVRIEKDRGEWLAFDFDNESLNFTAEYVGPASAEQV
Ga0066679_1078540523300005176SoilMARLRVRVELNRGGVGVPMHKLSSVVQEAQRFFQMLAQDVRIETDRGDWLAFDFDHESLNFTAEYVGPVSSDQVHEFCAAFDGVTSLRRATIAQFTRIADAIGEDELIGFG
Ga0066684_1040457823300005179SoilMARLRIRLELNRGGVGVPLEKMARVVDEAQRFFRMLGEDVHIDKDSGDWLGFDFDHESLNFTAE
Ga0068997_1006660213300005204Natural And Restored WetlandsVPLEKLASVVQQSQSFFRMLGDDVHIDQSQGEWLGFDFDHESLNFTAEFVGPVTQEQVDAFHSAFDGTTGLRRATIAQFARIADAIEGDEVIGFGLYLNEGEDPGEWRCLSRR
Ga0065705_1105416623300005294Switchgrass RhizosphereMSRLRIRMELNRGGVGVPLHKLASVVDEAQKFFRMLGEDIHIDNGSGVWLGCDFDSKSLNFTAEYVGPVE
Ga0066388_10156589213300005332Tropical Forest SoilVARLRVRVELNRGGVGVPLHKLASVVQESERFFQMLAQDVHVERERGEWLAFDFDHESLNFTAEYVGPVTADQVRAFCAAFDGVTSLRRATIAQFTRIAD
Ga0070710_1092542823300005437Corn, Switchgrass And Miscanthus RhizosphereMPRLRIRMELNRGGIGVPLHKMASIVDEAEKFFRMLADDVHIGKDSGEWLGFDFDNKSLNFTAEYIGPVEPEQIREFYAAFEGVTQLRRATIAQFARIAGAIEEDELIGF
Ga0070700_10133211813300005441Corn, Switchgrass And Miscanthus RhizosphereMTRLRVRMELNRGGVGVPLHKLAHVVDEAQKFFRMLGEDVHIGMDKGEWLGFDFDNKSLNFTAEYIGRVDDAQIREFHAAFDGVTLLRRATIAQFARIADPIEEDELIGFGLYQND
Ga0066681_1074864513300005451SoilMARLRIRMELNRGGVGVPLDKLARVVDEAQRFFHMLGEDVHIAAGSGEWLGSDFDQRSLNFTAEFVGPA
Ga0068867_10149631223300005459Miscanthus RhizosphereMELNRGGVGVPLHKLASVVDEAQKFFRMLGEDVHIDNGSGVWLGCDFDNKSLNFTAEYVGPVEPAQIREFYAAFDGVTQLRRATIAQFARIADSIDEDELIGFGLYQNDQES
Ga0070731_1057600923300005538Surface SoilMARLRIRIELSRGGMGVPLHKLASVVDEAQKFFHMLADDVHIDRRRGEWLGFDFDNQSLNFTAEFVGPVTQAQVEQFYAA
Ga0070733_1014040433300005541Surface SoilMSRLRIRVELNRGGVGVPLHKLASVVHESERFFQMLAEDVHIQKERGEWLAFDFDHESLNFTAEFVGPVTAEQVGAFANAFGGST
Ga0070733_1074175123300005541Surface SoilMARLRVRVELNRGGVGVPLHKLASVVHEAQRFFEMLAEDVHIAQDRGEWLGFDFDNESLNFTAEFVGPVSPEQAQ
Ga0070732_1006316333300005542Surface SoilMPRLRVRMELNRGGIGVPLHKMASIVGEAEKFFRMLADDVHIGKGSGDWLGFDFDDKSLNFTAEYVGPVEPEQVREFYAAFEGVT
Ga0066692_1076972913300005555SoilMARLRIRLELNRGGVGVPLEKMARVVDEAQRFFRMLGEDVHIDKDSGDWLGFDFDHESLNFTAEFVGPVDAAQVRDFYAAFDGVTQLRRATIAQFAHIADAIGEDELIG
Ga0097621_10093643323300006237Miscanthus RhizosphereMARLRVRMELNRGGVGVPLHKLAHVVDEAQKFFRMLGEDVHIGMDKGEWLGFDFDNKSLNFTAEYVGRVDDAQVREFHAAFDGVTLLRRATIAQFARIADPIEEDELIGFGLYQNDHETEPSEWRSLSK
Ga0068871_10203674313300006358Miscanthus RhizosphereMELNRGGVGVPLHKLAHVVDEAQKFFRMLGEDVHIGMDKGEWLGFDFDNKSLNFTAEYVGRVDDAQIREFHAAFDGVTLLRRATIAQFARIADPIEEDELIGFGLYQN
Ga0066658_1071293113300006794SoilMARLRIRLELNRGGVGVPLEKMARVVDEAQRFFRMLGEDVHIDKDSGDWLGFDFDHESLNFTAEFVGPVDATQVRDFYAAFDGVTQLRRATIAQFAHIADAIGEDELIGFGL
Ga0066659_1100448413300006797SoilMELNRGGIGVPLHKMASVVDEAQKFFRMLADDVHIGKDSGEWLGFDFDNKSLNFTAEYVGPVEPEQ
Ga0079219_1218953213300006954Agricultural SoilMSRLRIRVELNRGGVGVPLHKLASVVREAEKFFQLLAEDVHIERGRGEWLASEFDNGSLNFTAEYVGPVTADQVRA
Ga0099794_1073007713300007265Vadose Zone SoilMELNRGGVGVPLNKLASVVDEAQKFFRMLGEDVHINQGSGVWLGCDFDSKSLNFTAEYVGPVEPTQILKFYAAFDGVTQLRRATITQFARIADSIDEDELIGFGLYQSDEESEPSEWRSL
Ga0066710_10200025523300009012Grasslands SoilMSRLRIRMELNRGGAGVPLQKLASVVDEAQRFFRMLGEDVHIDQGSGVWLGCDFDNKSLNFTAEYVGPVEPAQIMKFYAAFDGVTSLRRATIAQFARIADSI
Ga0099827_1127845513300009090Vadose Zone SoilMASVVDEAQKFFRMLADDVHIGKDSGEWLGFDFDNKSLNFTAEYVGPVEPEQVREFYAAFEGVTLLRRATIAQFARIAGAIGEDELIGFGLYQNDQETEPSEWR
Ga0075418_1249597823300009100Populus RhizosphereMELSRGGSGVPLEKLASLVDEAQKFFRMLAEDVQISKDGGEWMGFDFHPKSLNFTAEYVGHVTP
Ga0066709_10175786913300009137Grasslands SoilMELNRGGVGVPLEKLARVVDEAQRFFHMLGEDVHIAAGSGEWLGSDFDQRSLNFTAEFVGPADPVQVREFYAAFDGVTLLRRATVAQFARIADAIDEDELIGFGLFQDERETEPSE
Ga0099792_1120847313300009143Vadose Zone SoilMASVVDEAQKFFRMLAADVHIGKDSGEWLGFDFDNKSLNFTAEYVGPVEPDQVREFYAAFEGVTLLRRATIAQFARIAGAIEEDELIGFGLFLDDRET
Ga0075423_1170988123300009162Populus RhizosphereMELNRGGVGVPLYKLASVVDEAQKFFRMLGEDVHIDEDSGVWLGCDFDNKSLNFTAEYVGPVEPAQVRQFYAAFDGVTLLRRATIAQFARIADSIEEDELIGFGLYQNDEESEPSEW
Ga0105241_1235312513300009174Corn RhizosphereMELNRGGVGVPLNKLASVVDEAQKFFRMLGDDVHIDRQAGEWLGMDFDNKSLNFTAEYIGPVEPRQVREFYAAFDGATLLRRATIAQFARIADAI
Ga0105242_1163200623300009176Miscanthus RhizosphereMARLRVRMELNRGGVGVPLQKLAHVVDEAHKFFKMLGEDVHLGKDQGEWLGFDFDNKSLNFTAEYIGRVDPAQVREFHAAFDGVTLLRRATIAQFARIADPIEEDELIGFGLYQNDHE
Ga0105237_1095374513300009545Corn RhizosphereVGVPLHKLASVVDEAQKFFYLLTEDVQIDQSQGEWLGFDFGNESLNFTAEFVGPVTAEQVAAFHAAFDGTTSLR
Ga0126374_1092558723300009792Tropical Forest SoilMELNRGGAGVPLQKLASVVDEAQRFFRMLGEDVHIDKGSGVWLGCDFDNKSLNFTAEYVGPVEPAQIVKFYAAFDGVTSLRRATIAQFARIADSIDEDELIGFGLYQSDEESEPSEWRS*
Ga0134128_1221947223300010373Terrestrial SoilMGVPLYKLASIVDEAQKFFHMLSEDIHIDQNKGEWLGFDFDHESLNFTAEFVGHVTGEQVSAFNTAFDGTTPLRRATIGQFARITEAIEEDELIGFG
Ga0134128_1232961823300010373Terrestrial SoilMARLRIRIELSRGGVGVPLHKLASVVDEAQKFFHMLAEDVHVDQNKGEWLGFDFDNESLNFTAEYVGPVTAAQVEGFYAAFDGTTPLRRGTIRQFAHIAVAIG
Ga0136449_10221966223300010379Peatlands SoilMELNRGGVGVPLQKMARVVDEAQKFFSMLAADVHVDPESGEWLGLDFDNKSLHFTAEFVGPVSAAQVVQFHAAFDGVTLLRRATIAQFARIAGAIEEDELI
Ga0136449_10298268213300010379Peatlands SoilMARLRVRVELNRGGVGVPLHKLASVVHEAQKFFQVLGRDVHIEKDRGEWLGFDFDNESLNFTAEYVGPVTAEQVHAFCEAFDGVTSLRRATIAQFTHIADAIGEDELIGFGLYQSEHEAEPSE
Ga0134124_1291032413300010397Terrestrial SoilMELNRGGVGVPLHKLASVVDEAQKFFRMLGEDVHIDNGSGVWLGCDFDNKSLNFTAEYVGPVEPAQIREFYAAFD
Ga0134127_1104795323300010399Terrestrial SoilMELNRGGVGVPLHKLASVVDEAQKFFRMLGEDVHIDNGSGVWLGCDFDNKSLNFTAEYVGPVEPAQIREFYAAFDGVTQLRRATIAQFARIADSIDEDE
Ga0105246_1135433323300011119Miscanthus RhizosphereMGVPLNKLASVVQQAQSFFRMLGDDVHIDQSQGDWLGFDFDHESLNFTAEFVGAVTQDQVAAFHSAFDGTTPLRRATIAQFARIADAIEEDEVI
Ga0150983_1205491713300011120Forest SoilMASIVDEAERFFRMLADDVHIGKDSGEWLGFDFDNKSLNFTAEYIGPVEPEQIREFYAAFEGVTQLRRATIAQFARIAGAIEEDELIGFGLYQNDRETEPSEWRSLSKRDALRIAEEIKM
Ga0150983_1476611523300011120Forest SoilMARLRVRVELNRGGLGIPLHKLASVVHESQRFFQLLAQDVHIERDRGEWLAFDLDNGSLNFTAEYVGPVSAEQVSSFYAAFDGVTSLRRATIAQFTRIAEAIGEDELIGFGLFGSDQ
Ga0150983_1546531013300011120Forest SoilMARLRIRVELNRGGVGIPLHKLASVVQESQRFFQMLAQDVHIERDRGEWLAFDLDNGSLNFTAEYVGPVSAEQVSSFYAAFDGVTSLRRATIAQFTRIAEAIGE
Ga0137391_1095596823300011270Vadose Zone SoilMELNRGGAGVPLQKLASVVDEAQRFFRMLGEDVHIDKGAGVWLGCDFDNKSLNFTAEYVGPVEPAQIMKFYAAFDGVTSLRRATIAQFARIADSIDEDELIGFGLYQSDEES
Ga0137388_1154598913300012189Vadose Zone SoilMKLSRGVAGVPLEELARLVDEAQKFFRLLAEDVQIGKDGGEWMGFDFHPKSLNFTAEFMGYVT
Ga0137362_1152020023300012205Vadose Zone SoilMELNRGGAGVPLQKLASVVDEAQRFFRMLGEDVHIDKGAGVWLGCDFDNKSLNFTAEYVGPVEPAQIMKFYAAFDGVTSLRRAT
Ga0137379_1143494813300012209Vadose Zone SoilMELNRGGAGVPLQKLASVVDEAQRFFRMLGEDVHIDKGSGVWLGCDFDNKSLNFTAEYVGPVEPAQIMKFYAAFDGVTSLRRATIAQFARIADSIDEDELIGFGLYQSDEESEPSEWRS
Ga0137377_1072683013300012211Vadose Zone SoilMASVVDEAQKFFRMLADDVHIGKDSGEWLGFDFDNKSLNFTAEYVGPVDPDQVREFYAAFEGVTLLRRAPSRSSRASPARLERTS*
Ga0137384_1017653933300012357Vadose Zone SoilMASVVDEAQTFFRMLADDVHIGKDSGEWLGFDFDNKSLNFTAEYVGPVEPEQVREFYAAFEGVTLLRRATIAQFARIAGAIGEDELIGFGLYQNDQETEPSEWRSLSKR
Ga0137384_1121140123300012357Vadose Zone SoilMELNRGGAGVPLQKLASVVDEAQRFFRMLGEDVHIDKGAGVWLGCDFDNKSLNFTAEYVGPVEPAQIM
Ga0137358_1102655613300012582Vadose Zone SoilMELNRGGVGVPLHKLASVVDEAQKFFRMLGEDIHIGRDSGEWLGLDFDNKSLNFTAEFVGPLEPEQVRQFYAAFDGVALLRRATIAQFARIADAIDEDELIGFGLYQNDQESEQSE
Ga0137395_1081408213300012917Vadose Zone SoilMASVVDEAQKFFRMLADDVHIGKDSGEWLGFDFDNKSLNFTAEYVGPVDPDQVREFYAAFEGVTLLPRAT
Ga0137359_1122577823300012923Vadose Zone SoilMASVVDEAQKFFRMLADDVHIGKDSREWLGFDFENKSLNFTAEYVGPVEPEQVREFYAAFEGVTLLRRATIAQFARIAGAIGEDELI
Ga0137407_1241097613300012930Vadose Zone SoilMELNRGGVGVPLHKLASVVDEAQKFFRMLGEDCHIEKHAGEWLGMDFDNKSLNFTAEYVGSVE
Ga0164301_1099016723300012960SoilMELNRGGVGVPLHKLASVVDEAQKFFRMLGEDVHIGKDSGVWLGCDFDNKSLNFTAEYVGPIQPAQIREFYAAFDGVTLLRRATIAQFARIADSIEEDELIGFGLYQDDQETEPSEWRSLSKRE
Ga0157374_1224192623300013296Miscanthus RhizosphereMARLRIRVELNRGGVGVPLHKLASVVEQAQKFFHMLADDVQVDQSKGEWLGFDFDHESLNFTAEFVGP
Ga0157378_1297600213300013297Miscanthus RhizosphereMELNRGGVGVPLHKLASVVDEAQKFFRMLGDDVHIDKHAGEWLGMDFDNKSLNFTAEYVGPVEPKQVREFYAAFDGVTLLRRATI
Ga0163162_1250854223300013306Switchgrass RhizosphereMELNRGGVGVPLHKLASVVDEAQKFFRMLGEDVHIDNGSGVWLGCDFDNKSLNFTAEYVGPVEPAQIREFYAAFDGVTQLRRATIAQFARIADSIDEDELIGFGLYQNDQESEP
Ga0157375_1375980713300013308Miscanthus RhizosphereMELNRGGVGVPLHKLASVVDEAQKFFRMLGEDVHIDNGSGVWLGCDFDNKSLNFTAEYVGPVEPAQIREFYAAFDGVTQLRRATIAQFARIADSIDEDELIGFGLYQSDQESEPSEWRSLSKLEA
Ga0157380_1112700813300014326Switchgrass RhizosphereMELNRGGVGVPLHKLAHVVDEAQKFFRMLGEDVHIGMDKGEWLGFDFDNKSLNFTAEYIGRVDDAQIREFHAAFDGV
Ga0157379_1222534413300014968Switchgrass RhizosphereMSRLRIRIELNRGGVGVPLNKLASVVQQAQSFFRMLGDDVHIDQSQGDWLGFDFDHESLNFTAEFVGAVTQDQVEAFHAAFDGTTPLRRATIAQFARIADAIEGDEVIGFGLYLNEAEDPAEWR
Ga0157376_1167493013300014969Miscanthus RhizosphereMELNRGGVGVPLHKLAHVVDEAQKFFRMLGEDVHIGMDKGEWLGFDFDNKSLNFTAEYVGRVDDAQIREFHAAFDGVTLLRRATIAQFARIADPIEEDELIGF
Ga0187809_1019500213300017937Freshwater SedimentMSRLRVRVELNRGGVGVPLHKLASVVHESQRFFEMLAEDVHIAQDRGEWLGFDFDNESLNFTAEYVGPVSLEQAQAFYAAFDGVTSLRRATIAQ
Ga0187809_1044539923300017937Freshwater SedimentMARLRIRVELNRGGVGVPLHKLTSVVQEAEKFFEMLAQDVHIETANGEWLAFDFDNESLNFTA
Ga0187808_1053914313300017942Freshwater SedimentMARLRIRVELNRGGVGVPLHKLSSVVQEAERFFRMLAEDVRIEKDRGEWLAFDFNNESLNFTVEYVGPVSPDQVRAFAAAFD
Ga0187817_1009468643300017955Freshwater SedimentLRVRVELGRGGAGVPLHKLASVVEEARKFFLMLGEDVKLDQSQGEWLGFDFDNEALNFTAEFVGPVTAEQVTAFYAAFDGTTSLRRATIAQFAHHRRDRGRRADRVRLVPHERGRSG
Ga0187778_1044422313300017961Tropical PeatlandMSRLRVRVELNRGGVGVPLHKLASVVHESQRFFEMLAEDVHISQDRGEWLGFDFDNESLNFTAEYVGPVSPDQAQAFYAAFDGVTSLRRAT
Ga0187781_1018336033300017972Tropical PeatlandMSRLRVRVELNRGGIGVPLHKLTSVVQEAEKFFEMLADDVHIETSSGEWLAFDFDNESLNFTAEFIGPVSPEQVQAFAAAFDGSTPLRRATIAQFTRITNAI
Ga0187777_1066906513300017974Tropical PeatlandMSRLRIRVELNRGGVGVPLHKLASVVHESQRFFEMLAQDVHIDKERGEWLGFDFDNESLNFTAEYVGPVSAEQVRAFSSAFDGITSLRRATIAQFTHIAD
Ga0187772_1047993113300018085Tropical PeatlandMSRLRVRVELNRGGVGVPLHKLTSVVQEAEKFFRMLAEDVHIETSSGEWLAFDFDNESLNFTAEFIGPVSPEQVQAFAAAFDGTTPLRRATIAQFTRITNAIGQDE
Ga0066669_1098837923300018482Grasslands SoilMARLRIRLELNRGGVGVPLEKMARVVDEAQRFFRMLGEDVHIDKDSGDWLGFDFDHESLNFTAEFVGPVDATQVR
Ga0210399_1036754613300020581SoilMSRLRIRVELNRGGVGVPLHKLASVVHESECFFQMLAEDVHIQKERGEWLAFDFDHESLNFTAEFVGPVTADQVGAFANA
Ga0210409_1095184423300021559SoilMELNRGGIGVPLHKMASIVDEAEKFFRMLADDVHIGKNSGEWLGFDFDNKSLNFTAEYIGPVEPEQIRKFYGAFEGVTLLRRATIAQFARIAGAIEEDELIG
Ga0242642_104008123300022504SoilLREDMARLRIRMELNRGGVGVPLSKLASVVDEAQKFFRMLGDDVHIGRDAGEWLGFDFDNKSLNFTAEFVGRVEPAQVREFQAAFDGVTLLRRATIAQFARIAGAIEEDELIGFGLYQNDEETEPSEWRSL
Ga0207642_1096755013300025899Miscanthus RhizosphereMELNRGGVGVPLHKLASVVDEAQKFFRMLGEDVHIDNGSGVWLGCDFDNKSLNFTAEYVGPVEPAQIREFYAAFDGVTQLRRATIAQFA
Ga0207699_1135692023300025906Corn, Switchgrass And Miscanthus RhizosphereMELNRGGIGVPLHKMASIVDEAEKFFRMLADDVHIGKDSGEWLGFDFDNKALNFTAEYIGPVEPEQIREFYAAFEGVTQLRRATIAQFARIAGAIEEDELIGFGLYQNDR
Ga0207701_1109641613300025930Corn, Switchgrass And Miscanthus RhizosphereMARLRVRMELNRGGVGVPLQKLAHVVDEAQKFFKMLGDDVHIGSRGEWLGFDFDNKSLNFTAEYIGPVEPEQVREFHAAFDGTTLLRRATIAQFARIADGIEED
Ga0207669_1135292713300025937Miscanthus RhizosphereMTRLRVRMELNRGGVGVPLHKLAHVVDEAQKFFRMLGEDVHIGMDKGEWLGFDFDNKSLNFTAEYIGR
Ga0207665_1062049413300025939Corn, Switchgrass And Miscanthus RhizosphereMPRLRIRMELNRGGIGVPLHKMASIVDEAEKFFRMLADDVHIGKDSGEWLGFDFDNKSLNFTAEYIGPVEPGQIREFYAAFEGVTQLRRATIAQFARIAGAIGEDELIGFGLYQNDQETE
Ga0207658_1209819913300025986Switchgrass RhizosphereMARLRIRMELNRGGVGVPLEKMARVVDEAQKFFRMLGEDVRIGKDSGEWLGFDFDHKSLNFTAEFVGPVSPAQVRDFYAAFDGVTLLRRATIAQFARIADSIEED
Ga0209580_1043619213300027842Surface SoilMARLRVRVELNRGGVGIPLHKLASVVQESQRFFQLLAQDVRIEKDRGEWLAFDLDNGSLNFTAEYVGPVSAEQV
Ga0209167_1033154813300027867Surface SoilMSRLRIRVELNRGGVGVPLHKLASVVHESERFFQMLAEDVHIQKERGEWLAFDFDHESLNFTAEFVGPVTAEQVGAFANAFGGSTSLRRATIA
Ga0209415_1017900343300027905Peatlands SoilMARLRVRVELNRGGVGIPLHKLASVVQEAQRFFQMLAHDVHIERDRGEWLAFDLDNGSLNFTAEYVGPVSAEQVSAF
Ga0209168_1023137133300027986Surface SoilMSRLRIRIELSRGGVGVPLGKLASVVDEAQKFLRMLSEDVHIDGARGEWMGFDFDRESLNFTAEYTGTVTPEQVRQFYAA
Ga0302303_1016876823300028776PalsaMARLRIRVELNRGGVGIPLHKLSSVVQEAEKFFEMLAEDVRIEKDRGEWLAFDFDNESLNFTAEYVGPASADQVQAFAAAFDGTTSLRRATIAQFTHITDAI
Ga0311369_1030168033300029910PalsaMARLRIRVELNRGGVGIPLHKLSSVVQEAEKFFEMLAEDVRIEKDRGEWLAFDFDNESLNFTAEYVGPASADQVQAFAAAFDGTTSLRRATIAQFTHITDAIGE
Ga0311340_1158113913300029943PalsaMELNRGGVGVPLHKLVSVVAEAQKFFRMLGDDVHIDQSAGEWLGVDFEGRSLDFTAEFVGPVTPVQVKEFQAAFDGVTLLRRDTITQFARIAGAIEE
Ga0302176_1026577423300030057PalsaMARLRIRVELNRGGVGIPLHKLSSVVQEAEKFFEMLAEDVRIEKDRGEWLAFDFDNESLNFTAEYVGPASADQVQAFAAAFDGTTSLRRATIAQFTHIT
Ga0311372_1181026123300030520PalsaMARLRIRVELNRGGVGIPLHKLSSVVQEAEKFFEMLAEDVRIEKDRGEWLAFDFDNESLNFTAEYVGPASADQVQAFAAAFDGTTSLRRATIAQFTHITDAIG
Ga0302325_1070958413300031234PalsaMARLRIRVELNRGGVGIPLHKLSSVVQEAEKFFEMLAEDVRIEKDRGEWLAFDFDNESLNFTAEYVGPASADQVQAFAAAFDGT
Ga0307474_1157255213300031718Hardwood Forest SoilMARLRVRVELNRGGVGIPLHKLASVVHESQRFFQLLAQDVRIEKDRGEWLAFDLDNGSLNFTAEYVGPVSAEQVSSFYAAFDGV
Ga0307475_1105457413300031754Hardwood Forest SoilLREDMARLRIRMELNRGGVGVPLSKLASVVDEAQKFFRMLGDDVHIGRDAGEWLGFDFDNKSLNFTAEFVGRVEPAQVREFQAAFDGVTLLRRATIAQFARIAGAIEEDELIGFGLYQNDEETEP
Ga0307478_1090231313300031823Hardwood Forest SoilMARLRVRVELSRGGAGVPLHKLASVVEEARKFFLMLGEDVSVDPARGEWLGFDFDHEALHFTAEYVGPVTAEQVAAFYAAFDGTTPLRRATIAQFARITDAIGEDELI
Ga0307478_1140147013300031823Hardwood Forest SoilMRRLRIRMELNRGGIGVPLYKMASIMDEAQKFFRMLADDVHIGKDSGEWLGFDFDNKSLNFTVEYVGPVKPEQVREFCAAFAGETLLRQATIAQFARI
Ga0307479_1047382713300031962Hardwood Forest SoilLREDMARLRIRMELNRGGVGVPLSKLASVVDEAQKFFRMLGDDVHIGRDAGEWLGFDFDNKSLNFTAEFVGRVEPAQVREFQAAFDGVTLLRRATIAQFARIAG
Ga0348332_1011703223300032515Plant LitterMARLRVRVELSRSGAGVPLHKLASVVEEARKFFLMLGEDVAIDPARGEWLGFDFDHEAHFTAEYVGPVTAAQVDAFYAAFDGTTSLRRSTIAQFAQIT
Ga0348332_1140590323300032515Plant LitterMARLRIRMELNRGRAGVPLSELARVVDEAQKFFGMLADDVHIGPGSGEWLASDFDNEFLNFTAEFTGPVELHQIEQFRAAFDGVTLLRR
Ga0335079_1091688123300032783SoilMARLRVRVELARSGAGVPLHKLASVVEEARKFFLMLAEDVKVDPSQGEWLGFDFDHEALNFTAEYVGPVTAEQ
Ga0335079_1238433123300032783SoilMARLRIRVELNRGGVGVPLHKLASVVHESGQFFTMLAEDVHIQKERGEWLAFDFDHESLNFTAEFVGPVTAEQVNSFANAFGGSTSLRRATIAQFTRIADAIGEDELIG
Ga0335078_1239703523300032805SoilMSRLRVRVELNRGGVGVPLHKLASVVHESQRFFEMLAEDVHIAQDCGEWLGFDFDNESLNFTAEYVGPVSQEQAQAFYAAFDGVTSLRRAT
Ga0335080_1058060023300032828SoilMSRLRVRVELNRGGVGVPLHKLASVVHEAQRFFEMLAQDVHITTEAGEWLGFDFDNESLNFTAEFVGPVTAEQTQAFYAAFDGTTSLRRATIAQFTQITE
Ga0335080_1236096523300032828SoilMARLRVRVELNRGGMGIPLHKLASVVHEAQKFFEMLAQDVHIAERGEWLAFDLDNGALNFTAEYVGHVSIEQVRAFYAA
Ga0335077_1190478913300033158SoilMARLRIRVELNRGGVGVPLHKLASVVHESGQFFTMLAEDVHIQKERGEWLAFDFDHESLNFTAEFVGPVTAEQVNSFANAFGGSTSLRRATIAQFTRIADAIGEDELIGF


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.