Metagenome / Metatranscriptome Family F095644

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095644
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	87 residues
Representative Sequence	MGNSLLSNEDKLELVAKATLLYLNGEERTEVSGNGYEGVLYTNHEWKVVGGFSGQQFDAVIESDADKEKLRLRFLVSEQTLRQGTAYSPN
Number of Associated Samples	78
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	13.46 %
% of genes near scaffold ends (potentially truncated)	59.05 %
% of genes from short scaffolds (< 2000 bps)	96.19 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.762 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (22.857 % of family members)
Environment Ontology (ENVO)	Unclassified (34.286 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.619 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.64% β-sheet: 32.20% Coil/Unstructured: 49.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13360	PQQ_2	15.24
PF00383	dCMP_cyt_deam_1	11.43
PF10994	DUF2817	6.67
PF01979	Amidohydro_1	3.81
PF01416	PseudoU_synth_1	3.81
PF07690	MFS_1	2.86
PF13231	PMT_2	1.90
PF13419	HAD_2	1.90
PF07452	CHRD	1.90
PF05685	Uma2	0.95
PF10518	TAT_signal	0.95
PF12697	Abhydrolase_6	0.95
PF02332	Phenol_Hydrox	0.95
PF01757	Acyl_transf_3	0.95
PF09720	Unstab_antitox	0.95
PF00296	Bac_luciferase	0.95
PF01323	DSBA	0.95
PF08308	PEGA	0.95
PF08669	GCV_T_C	0.95
PF01402	RHH_1	0.95
PF02754	CCG	0.95
PF00578	AhpC-TSA	0.95
PF13376	OmdA	0.95
PF01564	Spermine_synth	0.95
PF14437	MafB19-deam	0.95
PF07635	PSCyt1	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0101	tRNA U38,U39,U40 pseudouridine synthase TruA	Translation, ribosomal structure and biogenesis [J]	3.81
COG0247	Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF	Energy production and conversion [C]	0.95
COG2048	Heterodisulfide reductase, subunit B	Energy production and conversion [C]	0.95
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.95
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.76 %
Unclassified	root	N/A	35.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.76 %
Unclassified	root	N/A	35.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.76 %
Unclassified	root	N/A	35.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.24 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	24.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.24 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	20.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.95 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.95 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.95 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.95 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459007\|GJ61VE201EZU3O	Not Available	500	Open in IMG/M
2189573004\|GZGWRS402H8IPE	Not Available	518	Open in IMG/M
3300002908\|JGI25382J43887_10459592	Not Available	539	Open in IMG/M
3300003321\|soilH1_10062243	All Organisms → cellular organisms → Bacteria → Acidobacteria	1022	Open in IMG/M
3300004062\|Ga0055500_10030487	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300004463\|Ga0063356_102139590	Not Available	850	Open in IMG/M
3300004463\|Ga0063356_102561935	Not Available	782	Open in IMG/M
3300004633\|Ga0066395_10236192	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300005172\|Ga0066683_10271107	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300005332\|Ga0066388_100458703	Not Available	1915	Open in IMG/M
3300005332\|Ga0066388_100941045	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300005332\|Ga0066388_105632852	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300005451\|Ga0066681_10609603	Not Available	671	Open in IMG/M
3300005552\|Ga0066701_10848720	Not Available	542	Open in IMG/M
3300005553\|Ga0066695_10434438	Not Available	810	Open in IMG/M
3300005713\|Ga0066905_101310178	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300005764\|Ga0066903_100258904	All Organisms → cellular organisms → Bacteria	2697	Open in IMG/M
3300005764\|Ga0066903_100697468	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300005764\|Ga0066903_102020874	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300005764\|Ga0066903_107447380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300006046\|Ga0066652_100553763	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300006237\|Ga0097621_101403254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300006755\|Ga0079222_12140897	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300006797\|Ga0066659_10975545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300006844\|Ga0075428_100547276	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300006844\|Ga0075428_100748154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1040	Open in IMG/M
3300006844\|Ga0075428_100915571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	930	Open in IMG/M
3300006845\|Ga0075421_100605384	All Organisms → cellular organisms → Bacteria	1287	Open in IMG/M
3300006845\|Ga0075421_100966890	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300006846\|Ga0075430_101627923	Not Available	530	Open in IMG/M
3300006871\|Ga0075434_101675105	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	644	Open in IMG/M
3300006871\|Ga0075434_102226065	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300007076\|Ga0075435_101046454	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300009012\|Ga0066710_101297365	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300009012\|Ga0066710_101557104	Not Available	1016	Open in IMG/M
3300009100\|Ga0075418_10077910	All Organisms → cellular organisms → Bacteria	3527	Open in IMG/M
3300009100\|Ga0075418_10322582	All Organisms → cellular organisms → Bacteria	1648	Open in IMG/M
3300009100\|Ga0075418_11276036	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300009147\|Ga0114129_10401631	All Organisms → cellular organisms → Bacteria	1806	Open in IMG/M
3300009162\|Ga0075423_13097122	Not Available	509	Open in IMG/M
3300009233\|Ga0103856_10080888	Not Available	603	Open in IMG/M
3300009597\|Ga0105259_1159874	Not Available	548	Open in IMG/M
3300009792\|Ga0126374_10376684	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300010043\|Ga0126380_10098911	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300010043\|Ga0126380_10479615	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300010043\|Ga0126380_11208387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300010043\|Ga0126380_11863867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300010046\|Ga0126384_11451700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300010048\|Ga0126373_10622280	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300010091\|Ga0127485_1085830	Not Available	573	Open in IMG/M
3300010103\|Ga0127500_1085282	Not Available	790	Open in IMG/M
3300010130\|Ga0127493_1006004	Not Available	645	Open in IMG/M
3300010304\|Ga0134088_10488345	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300010326\|Ga0134065_10393610	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300010329\|Ga0134111_10564191	Not Available	506	Open in IMG/M
3300010358\|Ga0126370_10438316	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300010359\|Ga0126376_10582097	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1054	Open in IMG/M
3300010359\|Ga0126376_11134828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	792	Open in IMG/M
3300010360\|Ga0126372_11427868	All Organisms → cellular organisms → Bacteria → Acidobacteria	725	Open in IMG/M
3300010361\|Ga0126378_10893909	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300010366\|Ga0126379_10741550	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300010366\|Ga0126379_12192365	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300010376\|Ga0126381_103678662	Not Available	600	Open in IMG/M
3300010398\|Ga0126383_10198775	All Organisms → cellular organisms → Bacteria	1923	Open in IMG/M
3300010398\|Ga0126383_10738986	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1064	Open in IMG/M
3300010398\|Ga0126383_10990917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	928	Open in IMG/M
3300010398\|Ga0126383_11161820	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	862	Open in IMG/M
3300010398\|Ga0126383_12861608	Not Available	564	Open in IMG/M
3300010398\|Ga0126383_13570688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300010399\|Ga0134127_11741666	Not Available	699	Open in IMG/M
3300010400\|Ga0134122_11130446	Not Available	778	Open in IMG/M
3300010401\|Ga0134121_10595450	Not Available	1033	Open in IMG/M
3300010401\|Ga0134121_12525107	Not Available	556	Open in IMG/M
3300010403\|Ga0134123_11807509	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300010905\|Ga0138112_1008660	Not Available	513	Open in IMG/M
3300010905\|Ga0138112_1045573	Not Available	616	Open in IMG/M
3300012096\|Ga0137389_11786006	Not Available	511	Open in IMG/M
3300012175\|Ga0137321_1023974	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300012199\|Ga0137383_10147460	Not Available	1722	Open in IMG/M
3300012207\|Ga0137381_11479148	Not Available	571	Open in IMG/M
3300012402\|Ga0134059_1179516	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	772	Open in IMG/M
3300012971\|Ga0126369_10676611	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300014876\|Ga0180064_1076566	Not Available	693	Open in IMG/M
3300015372\|Ga0132256_100027047	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	5152	Open in IMG/M
3300015374\|Ga0132255_103135271	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300016294\|Ga0182041_11404005	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300016341\|Ga0182035_11898904	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300018433\|Ga0066667_12085067	Not Available	524	Open in IMG/M
3300018468\|Ga0066662_10129896	All Organisms → cellular organisms → Bacteria	1860	Open in IMG/M
3300021403\|Ga0210397_10243409	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300021407\|Ga0210383_10212826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1655	Open in IMG/M
3300021560\|Ga0126371_10300470	All Organisms → cellular organisms → Bacteria	1732	Open in IMG/M
3300021560\|Ga0126371_12915411	Not Available	580	Open in IMG/M
3300025928\|Ga0207700_10639022	Not Available	949	Open in IMG/M
3300026313\|Ga0209761_1214921	Not Available	817	Open in IMG/M
3300026536\|Ga0209058_1091476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1565	Open in IMG/M
3300026537\|Ga0209157_1122576	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300027909\|Ga0209382_10583017	All Organisms → cellular organisms → Bacteria → Acidobacteria	1220	Open in IMG/M
3300031231\|Ga0170824_107012778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300031942\|Ga0310916_10489477	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300031945\|Ga0310913_10935455	Not Available	609	Open in IMG/M
3300032001\|Ga0306922_11735317	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300032180\|Ga0307471_101146518	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300032180\|Ga0307471_102683503	Not Available	632	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.95%
Host-Associated	Host-Associated	19.05%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.19%
Plants	Host-Associated → Plants	19.05%
Aquatic	Environmental → Aquatic	4.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.24%
Sediment	Environmental → Aquatic → Sediment	2.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.86%
Freshwater	Environmental → Aquatic → Freshwater	0.95%
Marine	Environmental → Aquatic → Marine	0.95%
Roots	Host-Associated → Plants → Roots	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.29%
Loam	Environmental → Terrestrial → Soil → Loam	9.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.95%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.29%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.86%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	22.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.29%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.81%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.90%
River Water	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water	0.95%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.95%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.95%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.95%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2189573004	Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009233	Microbial communities of water from Amazon river, Brazil - RCM9	Environmental	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010091	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010103	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010130	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010905	Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012175	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT399_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014876	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10D	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L02_04565250	2170459007	Grass Soil	ATLLYLNGEDRTEVFGNGFEGVLSTKHEWKVIGGFSGQQFDAMLDSDCDEGKLRLRFLVSEQTLRQGMAYSSN
FG2_05409060	2189573004	Grass Soil	MSHERRALGIYVLMGNSLMSDEDKLDLVTKATLLYLKGEERTEVSGDGYEGVLFTNREWKVVGGFSGQQFDAILESELDKDKLRLRFLVSEQTLQQGTAYSPN
JGI25382J43887_104595921	3300002908	Grasslands Soil	TLLYLNGEDRAEVSGEGFEGVLYTNHEWKVVGGFSGQQFDAVLDSDSDEGKLRLRFLVSEQTLHQGMAYSTN*
soilH1_100622432	3300003321	Sugarcane Root And Bulk Soil	NDDKLELVAKATLLYLKGEERTEVSGDGYEGVLFTNREWKVVGGFSGQQFDAIIESDADKEKLRLRFLVSEQTLQQGMAYSPN*
Ga0055500_100304871	3300004062	Natural And Restored Wetlands	MTAVRWGWTFLMGNSLLSEDDKLDLVAKATLLYLEGKDRVEVSGSGYEGVLYTNHEWKVVGGLSGQQFDAVLDSDADEEKLRLRFLVSEQTL
Ga0063356_1021395902	3300004463	Arabidopsis Thaliana Rhizosphere	MPDGRWGYTFLIGNSLLNDADKLALVAKATLLYLSGEERVEVSGSSYEGVLYTNHEWKVVGGFSGQQFDAVLDLDTKTEKLRLRFLVSEQTLGQGMPYSAN*
Ga0063356_1025619352	3300004463	Arabidopsis Thaliana Rhizosphere	MELVAKATLLYLNGEERTEVKGASYEGVLYTNHEWRVIGGFSGQQFDAILETEADQEKLRLRFLVSEQTLRQGMAYSAN*
Ga0066395_102361922	3300004633	Tropical Forest Soil	MGNSLLSNEDKLELVAKATLLYLNGEERIEVSGNGYEGILYTNREWKVVGGFSGQQFDAVIESAADKEKLRLRFLVSEQTL
Ga0066683_102711071	3300005172	Soil	QRLELIAKATLLYLNGEERSEISGDGYEGVLYTNREWKVIGGFSGQQFDAVLDSDKEEGKLRLRFLVSEQTLGQGTAYTSN*
Ga0066388_1004587031	3300005332	Tropical Forest Soil	MGNSLLSNEDKLELVAKATLLYLNGEERTEVSGNGYEGVLYTNHEWKVVGGFSGQQFDAVIESDADKEKLRLRFLVSEQTLRQGSAYSPN*
Ga0066388_1009410452	3300005332	Tropical Forest Soil	MGTSLLSNDEKLDLVAKATLMYLNGEERTEVSGDGYEGVLYTNHEWKVVGGLSGQQFDAILETDADEEKLRLRFLVSEQTLQQGMAYSTN*
Ga0066388_1056328522	3300005332	Tropical Forest Soil	MGNSLLSNEEKLDLVAKATLMYLNGEERTDVSGEKYEGVLYTNHEWKVVGGFSGQQFDAVLDSDADEEKLRLRFLVSE
Ga0066681_106096031	3300005451	Soil	LYLNGEERTEVSGNGFEGILYTNHEWKVVGGFSGQQFDAILDSDTDEGKLRLRFLVSEQTLRQGMAYSAN*
Ga0066701_108487201	3300005552	Soil	LLYLNGEERTEVSGNGFEGILYTNHEWKVVGGFSGQQFDATLDSDTDEGKLRLRFLVSEQTLRQGMAYSAN*
Ga0066695_104344381	3300005553	Soil	NSLISNEDKLDLVAKATLLYLNGEERTEVSGNGFEGILYTNYEWKVVGGFSGQQFDAVLDSDTDEGKLRLRFLVSEQTLRQGMAYSAN*
Ga0066905_1013101782	3300005713	Tropical Forest Soil	MGTSLLSDEEKLDLVAKATIMYLNGEERTEVSGAGYEGVLYTNYEWKVVGGLSGQQFDAILESEADEEKLRLRFLVSEQTLCQGMAYSSN*
Ga0066903_1002589041	3300005764	Tropical Forest Soil	LLSHEEKLDLVGKATLMYLNGEHRTEVSGAGYEGVLYTNHEWKVVGGLSGQQFDAILESDADEEKLRLRFLVSEQTLRQGMAYSSN*
Ga0066903_1006974683	3300005764	Tropical Forest Soil	MGSSLLSNEEKLDLVSKATLLYLNGEERMEVGGSGYEGVLFTKYEWKVIGGFGGQQFDAILETDADKEKLRLRFLVSEQTLREGMAYSPN*
Ga0066903_1020208741	3300005764	Tropical Forest Soil	MGNSLLSNEDKLELVAKATLLYLNGEERTEVSGNGYEGVLYTNHEWKVVGGFSGQQFDAVIESDADKEKLRLRFLVSEQTLRQGTAYSPN*
Ga0066903_1074473801	3300005764	Tropical Forest Soil	SLLTNEDKLDLVAKATLLYLNGEERTEVAGGGYEGVLYTNHEWKVIGSFSGQQFDAILESDTENDKLRLRFLVSEQTLQQGMAYSPN*
Ga0066652_1005537633	3300006046	Soil	TFLMGNSLISNEDKLDLVAKATLLYLNGEERTEVSGNGFEGILYTNHEWKVVGGFSGQQFDAILDSDTDEGKLRLRFLVSEQTLRQGMAYSAN*
Ga0097621_1014032541	3300006237	Miscanthus Rhizosphere	DKLDLVTKATLLYLSGQERTEVSGDGYEGVLFTNREWKVVGGFSGQQFDAILESELDKEKLRLRFLVSEQTLQQGMAYSPN*
Ga0079222_121408971	3300006755	Agricultural Soil	MGNSLISNEDKQALVAKATLLYLNGEDRAEVSGEGFEGVLSTKHEWKVIGGFSGQQFDAVLDSDSDEGKLRLR
Ga0066659_109755451	3300006797	Soil	MTDIRWGLTFLMGNSLISNKDKLDLVAKATLLYLNGEDRAEVSGEGFEGVLYTNHEWKVVGGFSGQQFDAVLDSDSDEGKLRLRFLVSEQTLHQGMAYSTN*
Ga0075428_1005472761	3300006844	Populus Rhizosphere	MGSSLLSNEEKLDLVSKATLLYLNGEERMEVGGSGYEGVLFTKYEWKVIGGFGGQQFDAILDTDADKEKLRLRFLVSEQTLREGMAYSPN*
Ga0075428_1007481542	3300006844	Populus Rhizosphere	LYFKGMDRVPVAGDGYEGVLFTNHEWKVIGGFSGQQFDAEIDTEADEGKVRLRFLVSEQTLRQGQAAATASLN*
Ga0075428_1009155712	3300006844	Populus Rhizosphere	KLELVAKATLLYLNGEERVEVSGSGYEGVLYTNHEWKVVGGFSGQQFDAVLETDVEKEKLRLRFLVSEQTLAQGTPYSAN*
Ga0075421_1006053841	3300006845	Populus Rhizosphere	MTGVRWGFSFLLGNSLLSNEEKLDLVAKATLMYLNGDERLEVSGAGYEGVLSTKYEWKVVGGFSGQQFDAILDSDADEDKLRLRFLVSEQTLQQGMAYSSN*
Ga0075421_1009668901	3300006845	Populus Rhizosphere	LVAKATLMYLNGEERTDVAGNGYEGVLYTNHEWKVVGGFSGQQFDAILETDGDDEKLRLRFLVSEQTLCQGMAYSAN*
Ga0075430_1016279231	3300006846	Populus Rhizosphere	LYLNGEDRTEVSGEGYQGVLYTNREWKVVGGFSGQQFDAVLDSDADKDKLRLRFLVSEQTLRQGMAYSAN*
Ga0075434_1016751052	3300006871	Populus Rhizosphere	WGVTFLMGTSLLSQDDRLDLVAKATLLYLNGEERMEVSGDGYEGVLYTNREWKVIGGFSGQQFDALLESDKDKEKLRLRFLVSEQTLRQGMAYSAN*
Ga0075434_1022260652	3300006871	Populus Rhizosphere	LYLNGEERTEVAGDGYDGVLYTNHEWKVIGGFSGQQFDAILESESDSEKLRLRFLVSEQTLHQGMAYSAN*
Ga0075435_1010464541	3300007076	Populus Rhizosphere	ATLMYLNGEERTEVSGEGYEGVLYTKHEWKVVGGFSGQQFDAIIDSDADEDKLRLRFLVSEQTLRQGMAYSSN*
Ga0066710_1012973652	3300009012	Grasslands Soil	MTGVRWGVTFLIGTSLLSDGDKQDLVAKATLLYLNGEERTEVSGAGFEGVLYTNHEWKVVGGFSGQQFDAILDSDADKEKLRLRFLVSEQTLCQGMAYSSN
Ga0066710_1015571042	3300009012	Grasslands Soil	MTAVRWGVTFLIGSSLLSDEDKLDLVGKATLLYLNGQERTEVSGTGYEGVLYTNHEWKVVGGFSGQQFDAILDSGADKEKLRLRFLVSEQTLHQGMAYSSN
Ga0075418_100779103	3300009100	Populus Rhizosphere	MGSSLLSNDEKLDLVSKATLLYLNGEERMEVGGSGYEGVLFTKYEWKVIGGFGGQQFDAILDTDADKEKLRLRFLVSEQTLREGMAYSPN*
Ga0075418_103225822	3300009100	Populus Rhizosphere	SEEEKLDLVAKATLMYLNGEERTDVAGNGYEGVLYTNHEWKVVGGLSGQQFDAILETDSDEEKLRLRFLVSEQTLRQGMAYSSN*
Ga0075418_112760362	3300009100	Populus Rhizosphere	MGDVRWGYTFLIGNSLLNENDKLELVAKATLLYLNGEERVEVSGSGYEGVLYTNHEWKVVGGFSGQQFDAVLETDVEKEKLRLRFLVSEQTLAQGTPYSAN*
Ga0114129_104016312	3300009147	Populus Rhizosphere	MGTSLLSHDDRLDLVAKATLLYLNGEERMEVSGDGYEGVLYTNREWKVIGGFSGQQFDALLESDKDKEKLRLRFLVSEQTLRQGMAYSAN*
Ga0075423_130971221	3300009162	Populus Rhizosphere	MLSMTGVRWGVTFLMGTSLLSQDDRLDLVAKATLLYLNGEERMEVSGDGYEGVLYTNREWKVIGGFSGQQFDALLESDKDKEKLRLRFLVSEQTLRQGMAYSAN*
Ga0103856_100808881	3300009233	River Water	LVAKATVLYLSGDERIEVSGDGFEGVLFTRYEWRVIGGFSGQQFDALLESEKDKDKVRLRFLVSEQTLQQGVAYSPN*
Ga0105259_11598741	3300009597	Soil	SLLSNEDKLDLVAKATLLYLNGKERTEVSGGAYEGVLSTNHEWKVMGGFSGQQFDAILESELDQEKIRLRFLVSEQTLRQGTAYSPN*
Ga0126374_103766842	3300009792	Tropical Forest Soil	MGNSLLSNEDKLELVAKATLLYLNGEERIEVSGNGYEGILYTNREWKVVGGFSGQQFDAVIESDADEEKLRLRFLVSEQTLQQGTAYSPN*
Ga0126380_100989113	3300010043	Tropical Forest Soil	MGTSLLSNDEKLDLVAKATLMYLNGEERTEVSGDGYEGVLYTNHEWKVVGGLSGQQFDAIIETDADEEKLRLRFLVSEQTLRQGMAYSTN*
Ga0126380_104796152	3300010043	Tropical Forest Soil	MGNSLLSNEDKLELVAKATLLYLNGEDRMEVSGNGYEGILSTNHEWKVVGGFSGQQFDAVIESDADKEKLRLRFLVSEQTLLQGTAYSPN*
Ga0126380_112083872	3300010043	Tropical Forest Soil	MGNSLLSNEDKLELVAKATLLYLNGEQRTEVSGNGYEGVLYTNHEWKVVGGFSGQQFDAVIESDADKEKLRLRFLVSEQTLQQGMAYSPN*
Ga0126380_118638671	3300010043	Tropical Forest Soil	MGTSLLTDEEKLDLVAKATLLYLNREERTEVSGKGYEGVLYTNFEWKVMGGFSGQQFDAILESDADQEKLRLRFLVSEQTLQQGTAYSAN*
Ga0126384_114517001	3300010046	Tropical Forest Soil	MGTSLLTDEEKLDLVAKATLLYLNREERTEVSGKGYEGVLYTNYEWKVMGGFSGQQFDAILESDADQEKLRLRFLVSEQTLQQGTAYSAN*
Ga0126373_106222802	3300010048	Tropical Forest Soil	MGNSLLSNEDKLELVAKATLLYLNGEERIEVSGNGYEGILYTNHEWKVVGGFSGQQFDAVIESDADKEKLRLRFLVSEQTLQQGTAYSPN*
Ga0127485_10858302	3300010091	Grasslands Soil	FLMGNSLISNEDKLDLVAKATLLYLNGEERTEVSGNGFEGILYTNHEWKVVGGFSGQQFDAILDSDTDEGKLRLRFLVSEQTLRQGMAYSAN*
Ga0127500_10852821	3300010103	Grasslands Soil	GFTFLMGNSLISNEDKLDLVAKATLLYLNGEERTEVSGNGFEGILYTNHEWKVVGGFSGQQFDAILDSDNDEGKLRLRFLVSEQTLRPGMAYSAN*
Ga0127493_10060041	3300010130	Grasslands Soil	GFTFLMGNSLISNDDKLNLVAEATLLYLKGEERTEVSGDGFEGILYTHHEWKVVGGFSGQQFDAILDSDTDEGKLRLRFLVSEQTLREGMAYSTN*
Ga0134088_104883451	3300010304	Grasslands Soil	ATLLYLNREERTEVSGDGYEGVLYTNHEWKVVGAFSGQQFDAILESDADQEKLRLRFLVSEQTLQQGMAYSAN*
Ga0134065_103936101	3300010326	Grasslands Soil	LYLNGEDRAEISGDGFEGVLFTNHEWKVLGGLSGQQFEAVIESDSEEGKLRLRFLVSEQTLRQGMAYSAN*
Ga0134111_105641911	3300010329	Grasslands Soil	NEDKLDLVAKATLLYLNGEERTEVSGNGFEGILYTNYEWKVVGGFSGQQFDAVLDSDTDEGKLRLRFLVSEQTLRQGMAYSAN*
Ga0126370_104383162	3300010358	Tropical Forest Soil	MGNSLLSNEDKLELVAKATLLYLNGEQRTEVSGNGYEGVLYTNHEWKVVGGFSGQQFDAVIESDADKEKLRLRFLVSEQTLRQGSAYSPN*
Ga0126376_105820972	3300010359	Tropical Forest Soil	MGSSLLSNDEKLDLVAKATLMYLNREERTEVSGDCYEGVLYTNHEWKVVGGFSGQQFDAILETDVDEDKLRLRFLVSEQTLS
Ga0126376_111348282	3300010359	Tropical Forest Soil	MGTSLLSNDEKLDLVAKATLMYLNGEERTEVSGDGYEGVLYTNHEWKVVGGFSGQQFDAILETDAEEEKLRLRFLVSE
Ga0126372_114278683	3300010360	Tropical Forest Soil	FLMGNSLLSNEDKLDLVTKATLLYLNGEERTEVSGESYEGVLFTNREWKVVGGFSGQQFDAILESELDKDKLRLRFLVSEQTLQQGMAYSPN*
Ga0126378_108939092	3300010361	Tropical Forest Soil	MGNSLLSNEDKLELVAKATLLYLNGEERIEVSGNGYEGILYTNHEWKVVGGFSGQQFDAVIESDADKEKLRLRFLVSEQTLLQGTAYSPN*
Ga0126379_107415501	3300010366	Tropical Forest Soil	MGNSLLSNDDKLELVAKATLLYLNGEERTEVSGNGYEGVLYTNHEWKVVGGFSGQQFDAVIESELDKEKLRLRFLVSEQTLRQGTAYSPN*
Ga0126379_121923651	3300010366	Tropical Forest Soil	KLNLVAKATLMYLNSEDRTEVSGEGYEGVLYTNREWKVIGGFSGQQFDAIIDSDADEEKLRLRFLVSEQTLRQGMAYSSN*
Ga0126381_1036786622	3300010376	Tropical Forest Soil	MGNSLLSNEDKLELVAKATLLYLNGEERTEVSGDGYEGILYTNHEWKVVGGFSGQQFDAVIESDADKEKLRLRFLVSEQTLRQGTAYSPN*
Ga0126383_101987752	3300010398	Tropical Forest Soil	MGTSLLSNDEKLDLVAKATLMYLNGEERTEVSGDGYEGVLYTNHEWKVVGGFSGQQFDAILETDAEEEKLRLRFLVSEQTLQQGMAYSTN*
Ga0126383_107389861	3300010398	Tropical Forest Soil	LLSNEDKLELVAKATLLYLNGEERIEVSGTGYEGILYTNHEWKVVGGFSGQQFDAVIESDADEEKLRLRFLVSEQTLQQGTAYSPN*
Ga0126383_109909171	3300010398	Tropical Forest Soil	DDKLDLVAKATLLYLNGEDRTDVAGKGYEGVLYTNHEWKVIGGFSGQQFDAILESDADDEKLRLRFLVSEQTLRQGTAYSPN*
Ga0126383_111618202	3300010398	Tropical Forest Soil	LSHEEKLDLVGKATLMYLNGEHRTEVSGAGYEGVLYTNHEWKVVGGLSGQQFDAILESDADEEKLRLRFLVSEQTLRQGMAYSSN*
Ga0126383_128616081	3300010398	Tropical Forest Soil	GNSLISNEDKLDLVAKATLLYLNGEERTEVSGNGFEGILYTNHEWKVVGGFSGQQFDAILDSDRDEGKLRLRFLVSEQTLSQGMAYSAN*
Ga0126383_135706882	3300010398	Tropical Forest Soil	LYLNGEERTEVSGKGYEGVLYTNHEWKVVGGFSGQQFDAVIESDADKEKLRLRFLVSEQTLRQGTAYSPN*
Ga0134127_117416662	3300010399	Terrestrial Soil	MSEEEKLDLVSKATLMYLNGEQRIDVSGSSFEGILTTNREWKVIGGFSGQQFDAEIDTEADEGKIRLRFLVSEQTLRQGQAAAASLN*
Ga0134122_111304461	3300010400	Terrestrial Soil	MTGVRWGVTFLIGSSLLSDEDKLDLVGKATLLYLNGQERMEVSGAGFEGVLYTNHEWKVVGGFSGQQFDAILDSDADKEKLRLRFLVSEQTLRQGMAYSSN*
Ga0134121_105954501	3300010401	Terrestrial Soil	TFLMGNSLISNEDKLALVAKATLLYLDGKDRVEVSGDGFEGVLSTNHEWKVMGGFSGQQFDAVLDSDADEGKLRLKFLVSEQTLREGMAYSTN*
Ga0134121_125251072	3300010401	Terrestrial Soil	MGTSLLSDKEKMDLVAKATLMYLNGEERIEVSGAGYEGVLYTHYEWKVVGGLSGQQFDAVLDSDADEEKLRLRFLVS
Ga0134123_118075091	3300010403	Terrestrial Soil	KLDLVAKATLMYLNGEERTDVSGNAYEGVLYTNHEWKVVGAFSGQQFDAILETDGDEKLRLRFLVSEQTLRQGMAYSSN*
Ga0138112_10086601	3300010905	Grasslands Soil	LTFLMGNSLMSNEDKLDLIAKATLLYLNGEERTEVSGNGFEGILYTNHEWKVVGGFSGQQFDATLDSDTDEGKLRLRFLVSEQTLRQGMAYSAN*
Ga0138112_10455731	3300010905	Grasslands Soil	TFLMGNSLISNEDKLDLVAKATLLYLNGEERTEVSGNGFEGILYTNHEWKVVGGFSGQQFDAILDSDNDEGKLRLRFLVSEQTLRPGMAYSAN*
Ga0137389_117860062	3300012096	Vadose Zone Soil	MTDIRWGLTFLMGNSLISNKDKLDLVAKATLLYLNGEDRAEVSGEGFEGVLYTKHEWKVIGGFSGQQFDAILDSDTDEGTLRLRFLVSEQTLRQGMAYSEN*
Ga0137321_10239741	3300012175	Soil	FLMGNSLLSNEDKLDLVAKATLLYLNGKERTEVSGGAYEGVLSTNHEWKVMGGFSGQQFDAILESELDQEKIRLRFLVSEQTLQQGMAYSSN*
Ga0137383_101474601	3300012199	Vadose Zone Soil	LDLVAKATLLYLNGEERVEVSGSAYEGVLYTNHEWKVVGGFSGQQFDAVLESDVDEDKLRLRFLVSEQTLRQGMAYSPN*
Ga0137381_114791482	3300012207	Vadose Zone Soil	MGNSLISNEDKHALVAKATLLYLNGEDRAEISGDGFEGVLSTKHEWKVLGGFSGQQFEAVLDSDSDEGKLRLRFLVSEQTLRQGPAYSTN*
Ga0134059_11795162	3300012402	Grasslands Soil	GNSLISNEDKLDLVAKATLLYLNGEERTEVSGNGFEGILYTNHEWKVVGGFSGQQFDAILDSDTDEGKLRLRFLVSEQTLRQGMAYSAN*
Ga0126369_106766111	3300012971	Tropical Forest Soil	MGNSLLSNEDKLELVTKATLLYLNGEERMEVSGDGYEGILYTNHEWKVVGGFSGQQFDAVIESDADEEKLRLRFLVSEQTLRQGSAYSPN*
Ga0180064_10765661	3300014876	Soil	FLMGNSLLSNEDKLDLVAKATLLYLNGKERTEVSGGAYEGVLSTNHEWKVMGGFSGQQFDAILESELDEEKIRLRFLVSEQTLQQGMAYSSN*
Ga0132256_1000270474	3300015372	Arabidopsis Rhizosphere	MGSSLLSNEEKLDLVSKATLLYLNGEERMEVEGGGYEGVLFTKYEWKVIGGFGGQQFDAILETDADKEKLRLRFLVSEQTLREGMAYSPN*
Ga0132255_1031352712	3300015374	Arabidopsis Rhizosphere	FTFLIGTSLLSNEEKLDLVAKATLMYLNGEERIDVSGVGYEGVLYTHYEWKVVGGFSGQQFDAVLDSDADEEKLRLRFLVSEQTLQQGAAYSPN*
Ga0182041_114040052	3300016294	Soil	MGNSLLSNDDKLELVAKATLLYLNGEERTEVSGNGYEGVLYTNHEWKVVGGFSGQQFDAVIESDLDKEKLRLRFLVSEQTLRQGTAYSPN
Ga0182035_118989042	3300016341	Soil	MGNSLLSNDDKLELVAKATLLYLNGEERSEVSGNGYEGVLYTNHEWKVVGGFSGQQFDAVIESELDKEKLRLRFLVSEQT
Ga0066667_120850672	3300018433	Grasslands Soil	LVAKATLLYLDGKDRVEVSGDGFEGVLSTNHEWKVMGGFSGQQFDAVLDSDADEGKLRLKFLVSEQTLRQGMAYSTN
Ga0066662_101298961	3300018468	Grasslands Soil	MTDIRWGLTFLMGNSLISNKDKLDLVAKATLLYLNGEDRAEVSGEGFEGVLYTNHEWKVIGGFSGQQFDAVLDSDRDEGELRLRFLVSEQTLRQGMAYSPN
Ga0210397_102434092	3300021403	Soil	MGNSLLSNEDKMELVAKATLLYLNGEERTEVSGNVYEGILYTNHEWKVIGGFSGQQFDAVIESDADQEKLRLRFLVSEQTLQQGTAYSPN
Ga0210383_102128262	3300021407	Soil	GFTFLMGNSLLSNEDKMELVAKATLLYLNGEERTEVSGNGYEGILYTNHEWKVIGGFSGQQFDAVIESDADQEKLRLRFLVSEQTLQQGTAYSPN
Ga0126371_103004702	3300021560	Tropical Forest Soil	MGNSLLSNEDKLELVAKATLLYLNGEERIEVSGNGYEGILYTNREWKVVGGFSGQQFDAVIESDADEEKLRLRFLVSEQTLQQGTAYSPN
Ga0126371_129154112	3300021560	Tropical Forest Soil	LSNEDKLELVAKATLLYLNGEERTEVSAGGYEGVLYTNHEWKVVGGFSGQQFDAVIESDADKEKLRLRFLVSEQTLRQGTAYSPN
Ga0207700_106390221	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	KATLLYLNGEERIEVSGAGYEGILYTNHEWKVVGGFSGQQFDAVIESDADKEKLRLRFLVSEQTLKQGTAYSPN
Ga0209235_10919693	3300026296	Grasslands Soil	LYLNGEERTEVSGNGFEGILYTNHEWKVVGGFSGQQFDAILDSDTDEGKLRLRFLVSEQTLRQGMAYSAN
Ga0209761_12149212	3300026313	Grasslands Soil	ATLLYLNGEERTEVSGNGFEGILYTNHEWKVVGGFSGQQFDATLDSDTDEGKLRLRFLVSEQTLRQGMAYSAN
Ga0209058_10914761	3300026536	Soil	LSHEDKLDLVAKATLLYLNREERTEVSGDGYEGVLYTNHEWKVVGAFSGQQFDAILESDADQEKLRLRFLVSEQTLQQGMAYSAN
Ga0209157_11225761	3300026537	Soil	LISNEDKLDLVAKATLLYLNGEERTEVSGNGFEGILYTNHEWKVVGGFSGQQFDAILDSDNDEGKLRLRFLVSEQTLLPGMAYSAN
Ga0209382_105830173	3300027909	Populus Rhizosphere	MTGVRWGFSFLLGNSLLSNEEKLDLVAKATLMYLNGDERLEVSGAGYEGVLSTKYEWKVVGGFSGQQFDAILDSDADEDKLRLRFLVSEQTLQQGMAYSSN
Ga0170824_1070127782	3300031231	Forest Soil	DLVTKATLLYLKGEERTEVSGDGYEGVLFTNREWKVVGGFSGQQFDAILESELDKDKLRLRFLVSEQTLQQGTAYSPN
Ga0310916_104894772	3300031942	Soil	MGNSLLSNDDKLELVAKATLLYLNGEERTEVSGNGYEGVLYTNHEWKVVGGFSGQQFDAVIESELDKEKLRLRFLVSEQTLRQGRAYSPN
Ga0310913_109354552	3300031945	Soil	ISNDDKLDLVARATLMYLNGEDRVEVSGEGFEGVLSTSHEWKVVGGFSGQQFDAIIDSDTDEGKLRLRFLVSEQTLRQGMAYSSN
Ga0306922_117353172	3300032001	Soil	AKATLMYLNGEDRTEVSGEGYEGVLYTNREWKVIGGFSGQQFDAIIDSDADEDKLRLRFLVSEQTLRQGMAYSSN
Ga0307471_1011465183	3300032180	Hardwood Forest Soil	SLISNEDKLDLVAKATLLYLNGEERTEVSGNGFEGILYTNHEWKVVGGFSGQQFDAILDSDTDEGKLRLRFLVSEQTLRQGMAYSAN
Ga0307471_1026835031	3300032180	Hardwood Forest Soil	MTGVRWGWTFLMGNSLMSEDDKLDLVAKATLLYLEGKDRIEVSGSGYEGVLYTNHEWKVVGGLSGQQFDAVLDSDADEEKLRLRFLVSEQTLSQGAAYSPN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095644

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences