Metagenome / Metatranscriptome Family F095643

Basic Information
Family ID	F095643
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	48 residues
Representative Sequence	FTVNIHSVEADWDDENQRVNMRVEIGLISNGATVTITQIRYWVAILAQM
Number of Associated Samples	86
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.05 %
% of genes from short scaffolds (< 2000 bps)	90.48 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (97.143 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (14.286 % of family members)
Environment Ontology (ENVO)	Unclassified (31.429 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.762 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.12% β-sheet: 61.22% Coil/Unstructured: 32.65%
Feature Viewer

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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01510	Amidase_2	7.62
PF00482	T2SSF	4.76
PF08808	RES	2.86
PF13884	Peptidase_S74	1.90
PF02517	Rce1-like	1.90
PF05638	T6SS_HCP	1.90
PF01427	Peptidase_M15	1.90
PF12847	Methyltransf_18	0.95
PF09722	Xre_MbcA_ParS_C	0.95
PF14534	DUF4440	0.95
PF03814	KdpA	0.95
PF05598	DUF772	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	2.86
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	1.90
COG2173	D-alanyl-D-alanine dipeptidase	Cell wall/membrane/envelope biogenesis [M]	1.90
COG3157	Type VI protein secretion system component Hcp (secreted cytotoxin)	Intracellular trafficking, secretion, and vesicular transport [U]	1.90
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	1.90
COG2060	K+-transporting ATPase, KdpA subunit	Inorganic ion transport and metabolism [P]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.14 %
Unclassified	root	N/A	2.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.14 %
Unclassified	root	N/A	2.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.14 %
Unclassified	root	N/A	2.86 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	78.10 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.86 %
Unclassified	root	N/A	2.86 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	78.10 %
Unclassified	root	N/A	2.86 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.95 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	66.67 %
Unclassified	root	N/A	2.86 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.95 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	66.67 %
Unclassified	root	N/A	2.86 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.90 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.95 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	66.67 %
Unclassified	root	N/A	2.86 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1.90 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.95 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	66.67 %
Unclassified	root	N/A	2.86 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1.90 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.95 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	66.67 %
Unclassified	root	N/A	2.86 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1.90 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.95 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16827801	All Organisms → cellular organisms → Bacteria	6772	Open in IMG/M
2170459013\|GO6OHWN02IJB67	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	524	Open in IMG/M
2228664021\|ICCgaii200_c0841814	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	556	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0870311	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1168	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10953737	Not Available	551	Open in IMG/M
3300000550\|F24TB_10633769	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
3300000709\|KanNP_Total_F14TBDRAFT_1004509	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	953	Open in IMG/M
3300000890\|JGI11643J12802_10238778	All Organisms → cellular organisms → Bacteria	1825	Open in IMG/M
3300000890\|JGI11643J12802_11883088	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1044	Open in IMG/M
3300004156\|Ga0062589_102254201	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	559	Open in IMG/M
3300004157\|Ga0062590_102480786	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300004463\|Ga0063356_100309046	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1966	Open in IMG/M
3300004479\|Ga0062595_100068540	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1729	Open in IMG/M
3300005186\|Ga0066676_10088215	All Organisms → cellular organisms → Bacteria	1856	Open in IMG/M
3300005186\|Ga0066676_10406609	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300005331\|Ga0070670_101966193	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300005340\|Ga0070689_102077229	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300005344\|Ga0070661_101901261	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
3300005367\|Ga0070667_100342804	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1352	Open in IMG/M
3300005434\|Ga0070709_11458683	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
3300005436\|Ga0070713_100276481	All Organisms → cellular organisms → Bacteria	1539	Open in IMG/M
3300005445\|Ga0070708_101476181	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300005450\|Ga0066682_10076943	All Organisms → cellular organisms → Bacteria	2067	Open in IMG/M
3300005450\|Ga0066682_10277588	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1081	Open in IMG/M
3300005466\|Ga0070685_10679603	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	749	Open in IMG/M
3300005553\|Ga0066695_10024477	All Organisms → cellular organisms → Bacteria	3424	Open in IMG/M
3300005764\|Ga0066903_103355966	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	864	Open in IMG/M
3300005841\|Ga0068863_102438216	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
3300006028\|Ga0070717_11811678	Not Available	551	Open in IMG/M
3300006046\|Ga0066652_100686244	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300006237\|Ga0097621_101423701	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	656	Open in IMG/M
3300006844\|Ga0075428_102738967	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300006871\|Ga0075434_100740448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1000	Open in IMG/M
3300009012\|Ga0066710_103129770	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	639	Open in IMG/M
3300009098\|Ga0105245_10306581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1560	Open in IMG/M
3300009137\|Ga0066709_101742618	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	880	Open in IMG/M
3300009156\|Ga0111538_12448552	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	655	Open in IMG/M
3300009174\|Ga0105241_11801322	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	597	Open in IMG/M
3300009174\|Ga0105241_12257080	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300010373\|Ga0134128_10615155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1209	Open in IMG/M
3300010375\|Ga0105239_10711663	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1148	Open in IMG/M
3300010403\|Ga0134123_10784277	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	944	Open in IMG/M
3300010403\|Ga0134123_12295798	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	603	Open in IMG/M
3300012201\|Ga0137365_10312449	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1164	Open in IMG/M
3300012349\|Ga0137387_10934429	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	625	Open in IMG/M
3300012359\|Ga0137385_11274031	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	597	Open in IMG/M
3300012885\|Ga0157287_1015959	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	929	Open in IMG/M
3300012895\|Ga0157309_10076893	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300012929\|Ga0137404_10061252	All Organisms → cellular organisms → Bacteria	2920	Open in IMG/M
3300012930\|Ga0137407_10101491	All Organisms → cellular organisms → Bacteria	2468	Open in IMG/M
3300012957\|Ga0164303_10819988	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	642	Open in IMG/M
3300012958\|Ga0164299_10488950	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	815	Open in IMG/M
3300012961\|Ga0164302_10637448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	779	Open in IMG/M
3300012961\|Ga0164302_11056094	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	638	Open in IMG/M
3300012972\|Ga0134077_10143965	All Organisms → cellular organisms → Bacteria → Acidobacteria	948	Open in IMG/M
3300012988\|Ga0164306_10450549	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	979	Open in IMG/M
3300013308\|Ga0157375_13240477	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300014968\|Ga0157379_12343064	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300014969\|Ga0157376_11841008	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	642	Open in IMG/M
3300015371\|Ga0132258_10634719	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2685	Open in IMG/M
3300015371\|Ga0132258_11097720	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2011	Open in IMG/M
3300015372\|Ga0132256_100687397	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1139	Open in IMG/M
3300015372\|Ga0132256_102841296	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	582	Open in IMG/M
3300015373\|Ga0132257_103299234	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	588	Open in IMG/M
3300015374\|Ga0132255_102164115	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	848	Open in IMG/M
3300015374\|Ga0132255_103411400	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	676	Open in IMG/M
3300015374\|Ga0132255_103582528	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	660	Open in IMG/M
3300015374\|Ga0132255_104433365	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	595	Open in IMG/M
3300016294\|Ga0182041_10364761	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1218	Open in IMG/M
3300018027\|Ga0184605_10395575	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	618	Open in IMG/M
3300018081\|Ga0184625_10159982	All Organisms → cellular organisms → Bacteria → Proteobacteria	1177	Open in IMG/M
3300018482\|Ga0066669_10609688	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300018482\|Ga0066669_10858863	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	808	Open in IMG/M
3300019789\|Ga0137408_1390821	All Organisms → cellular organisms → Bacteria → Acidobacteria	1140	Open in IMG/M
3300019996\|Ga0193693_1030616	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	942	Open in IMG/M
3300019996\|Ga0193693_1034684	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	866	Open in IMG/M
3300021478\|Ga0210402_11930165	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300022880\|Ga0247792_1043374	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	824	Open in IMG/M
3300025271\|Ga0207666_1001581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2693	Open in IMG/M
3300025315\|Ga0207697_10261593	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	766	Open in IMG/M
3300025911\|Ga0207654_10858725	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	657	Open in IMG/M
3300025915\|Ga0207693_10058029	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3033	Open in IMG/M
3300025915\|Ga0207693_10182283	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1653	Open in IMG/M
3300025928\|Ga0207700_11549597	Not Available	587	Open in IMG/M
3300025945\|Ga0207679_11963383	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
3300026041\|Ga0207639_11047167	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	765	Open in IMG/M
3300026089\|Ga0207648_11419031	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
3300026095\|Ga0207676_11543388	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	661	Open in IMG/M
3300026307\|Ga0209469_1067250	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1096	Open in IMG/M
3300026327\|Ga0209266_1287446	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300026329\|Ga0209375_1050431	All Organisms → cellular organisms → Bacteria	2078	Open in IMG/M
3300028768\|Ga0307280_10065836	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1158	Open in IMG/M
3300030842\|Ga0075404_11450979	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300030916\|Ga0075386_12180063	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1033	Open in IMG/M
3300030945\|Ga0075373_11659897	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	730	Open in IMG/M
3300031057\|Ga0170834_106015056	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	607	Open in IMG/M
3300031122\|Ga0170822_12198115	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	900	Open in IMG/M
3300031231\|Ga0170824_100914363	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	542	Open in IMG/M
3300031231\|Ga0170824_113901606	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	595	Open in IMG/M
3300031231\|Ga0170824_128217846	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300031446\|Ga0170820_14184004	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300031474\|Ga0170818_103636634	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	575	Open in IMG/M
3300031474\|Ga0170818_107229918	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	770	Open in IMG/M
3300031474\|Ga0170818_107508837	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	694	Open in IMG/M
3300031474\|Ga0170818_110734537	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	535	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.48%
Host-Associated	Host-Associated	29.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.57%
Plants	Host-Associated → Plants	29.52%
Aquatic	Environmental → Aquatic	1.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.38%
Sediment	Environmental → Aquatic → Sediment	1.90%
Roots	Host-Associated → Plants → Roots	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.14%
Loam	Environmental → Terrestrial → Soil → Loam	11.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.90%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.05%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.95%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	9.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.95%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000709	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA F1.4 TB amended with BrdU and acetate no abondance	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300030842	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M

Geographical Distribution

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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095643

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00399170	2088090014	Soil	FTVNIHSVEADWDDENQRVNMRVEIGLISNGATVTITQIRYWVAILAQM
N57_07443050	2170459013	Grass Soil	ENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQI
ICCgaii200_08418141	2228664021	Soil	DENQRVKVRVEIGLIANGATVTITQIRYSVAILAQM
ICChiseqgaiiDRAFT_08703113	3300000033	Soil	IVSVQNTPREFTVNIHSVEADWDDENQKVNVRVEIGLISNGATVTITQIRYWVAILAQM*
ICChiseqgaiiFebDRAFT_109537371	3300000363	Soil	ENQRVKVRVEIGLIANGATVTITQIRYSVAILAQM*
F24TB_106337691	3300000550	Soil	VEADWDDENQRVKVRVEIGLISNGATVAITQIRYWVAILAQM*
KanNP_Total_F14TBDRAFT_10045091	3300000709	Soil	VQTSPREFTVNIQSVEADWDDENQRVKVRVEIGLISNGATVAITQIRYWVAILAQM*
JGI11643J12802_102387782	3300000890	Soil	QIVSVQAAPREFTVNIHSVEADWDDENQRVNMRVEIGLIANGATVTVTQIRYSVAILAQM
JGI11643J12802_118830882	3300000890	Soil	EFTVNIHSVEADWDDENQRVNMRVEIGLISNGATVTITQIRYWVAILAQM*
Ga0062589_1022542011	3300004156	Soil	NIHSVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQM*
Ga0062590_1024807861	3300004157	Soil	NIHSVEADWDDENQRVNVRVEIGIIANGTTVTITQIRYWIAILAQM*
Ga0063356_1003090461	3300004463	Arabidopsis Thaliana Rhizosphere	SVEADWDDENQRVKVRVEIGVISNGTTVEITQIRYWVAILAQM*
Ga0062595_1000685401	3300004479	Soil	FTVNIHSVEADWDDENQRVNMRVEIGLITNGATVTITQIRYSVAILAQM*
Ga0066676_100882151	3300005186	Soil	QTPPREFTVNVHSVEADWDDENQRVKVRVEIGVMSNGATVEITQIRYWVAILAQM*
Ga0066676_104066092	3300005186	Soil	EADWDDENQRVKVRVEIGVISNGATVEITQIRYWVAILAEM*
Ga0070670_1019661932	3300005331	Switchgrass Rhizosphere	HSVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQM*
Ga0070689_1020772291	3300005340	Switchgrass Rhizosphere	HSVEADWDDENQRVKVRVEIGVIANGTTVTVTQIRYSVAILAQM*
Ga0070661_1019012612	3300005344	Corn Rhizosphere	NIHSVEADWDDENQRVNMRVEIGLISNGTTVTITQIRYWVAILAQM*
Ga0070667_1003428041	3300005367	Switchgrass Rhizosphere	NIHSVEADWDDENQRVKVRVEIGLIANGATVTITQIRYSVAILAQM*
Ga0070709_114586831	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	ADWDDENQRVNMRVEIGLITNGSTVTITQIRYWVAILAQM*
Ga0070713_1002764811	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	QIVSVQTPPREFTVNVHSVEADWDDENQRVKVRVEIGVISNGATIEITQIRYWVAILAQM
Ga0070708_1014761812	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	HSVEADWDDENQRVKVRVEIGLIANGATVTITQIRYSVAILAQM*
Ga0066682_100769431	3300005450	Soil	TPPREFTVNVHSIEADWDDENQRVKVRVEIGVISDGATVEITQIRYWVAILAQM*
Ga0066682_102775881	3300005450	Soil	QTVSVQTSPREFTVNVHSVEADWDDEDQRVEVRAEIGIISNGTTVEITQLRYWVAILAQL
Ga0070685_106796032	3300005466	Switchgrass Rhizosphere	PREFTVNIHSVEADWDDENQRVKVRVEIGVIANGTTVTVTQIRYSVAILAQM*
Ga0066695_100244778	3300005553	Soil	QIVSVQTPPREFTVNVHSIEADWDDENQRVKVRVEIGVISDGATVEITQIRYWVAILAQM
Ga0066903_1033559662	3300005764	Tropical Forest Soil	QTTPREFTVNIHSVEADWDDENQRVKVRVEIGVIANGSTVTITQIRYWVAILAQM*
Ga0068863_1024382162	3300005841	Switchgrass Rhizosphere	EADWDDENQRVNVRVEIGIIANGATVTITQIRYWIAILAQM*
Ga0070717_118116782	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	PPREFTVNVHSVEADWDDENQRVKVRVEIGVISNGATIEITQIRYWVAILAQM*
Ga0066652_1006862441	3300006046	Soil	QIVSVQTPPREFTVNVHSIEADWDDENQRVKVRVEIGVISNGATVEITQIRYWVAILAEM
Ga0097621_1014237013	3300006237	Miscanthus Rhizosphere	SQIVSVQNTPREFTVNIHSVEADWDDENQRVNVRVEIGIIANGATVTITQIRYWIAILAQM*
Ga0075428_1027389671	3300006844	Populus Rhizosphere	VNIHSVEADWDDENQRVNMRVEIGLIANGATVTVTQIRYSVAILAQM*
Ga0075434_1007404481	3300006871	Populus Rhizosphere	EFTVNVLSVEADWDDEAQRVNVRVEIGVHSNGATVEITQVRYWVAILAQI*
Ga0066710_1031297701	3300009012	Grasslands Soil	WDDENQRVKVRVEIGVMSDGATVEITQIRYWVAILAQM
Ga0105245_103065813	3300009098	Miscanthus Rhizosphere	EFTVNIHSVEADWDDENQRVKVRVEIGLIANGATVTITQIRYSVAILAQM*
Ga0066709_1017426182	3300009137	Grasslands Soil	VNVHSVEADWDDENQRVKVRVEIGVMSDGATVEITQIRYWVAILAQM*
Ga0111538_124485521	3300009156	Populus Rhizosphere	ENQRVNVRVEIGIIANGATVTITQIRYWIAILAQM*
Ga0105241_118013222	3300009174	Corn Rhizosphere	NIHSVEADWDDENQRVKVRVEIGVIANGSTVTITQIRYWVAILAQI*
Ga0105241_122570802	3300009174	Corn Rhizosphere	HSVEADWDDENQRVNVRVEIGIIANGATVTITQIRYWIAILAQM*
Ga0134128_106151553	3300010373	Terrestrial Soil	VEADWDDENQRVKVRVEIGVIANGTTVTVTQIRYSVAILAQM*
Ga0105239_107116631	3300010375	Corn Rhizosphere	HSVEADWDDENQRVNVRVEIGIIANGATVTITQIRYWIAILAQL*
Ga0134123_107842773	3300010403	Terrestrial Soil	TVNIHSVEADWDDENQRVKVRVEIGLIANGATVTITQIRYSVAILAQM*
Ga0134123_122957981	3300010403	Terrestrial Soil	TVNIHSVEADWDDENQRVKVRVEIGLIANGATVTITQIRYWVAILAQI*
Ga0137365_103124493	3300012201	Vadose Zone Soil	ASVASQTVSVQTPPREFTVNVHSVEADWDDENQRVKVRVEIGVMSDGATVEITQIRYWVAILAQM*
Ga0137387_109344292	3300012349	Vadose Zone Soil	WDDENQRVKVRVEIGVMSDGATVEITQIRYWVAILAQM*
Ga0137385_112740311	3300012359	Vadose Zone Soil	TPPREFTVNVHSIEADWDDENQRVKVRVEIGVISNGATVEITQIRYWVAILAQM*
Ga0157287_10159591	3300012885	Soil	WDDQNQRVDVRVEIGIIANGATVTITQIRYWIAILAQM*
Ga0157309_100768931	3300012895	Soil	TPREFTVNIHSVEADWDDENQRVNVRVEIGIIANGATVTITQIRYWIAILAQM*
Ga0137404_100612521	3300012929	Vadose Zone Soil	DWDDENQRVKVRVEIGVMSNGATVEITQIRYWVAILAQM*
Ga0137407_101014911	3300012930	Vadose Zone Soil	TSPREFTVNVHSVEADWDDEDQRVEVRAEIGIISNGTTVEITQLRYWVAILAQL*
Ga0164303_108199881	3300012957	Soil	EFTVNIHSVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQM*
Ga0164299_104889502	3300012958	Soil	FTVNIHSVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQM*
Ga0164302_106374481	3300012961	Soil	SVEADWDDENQRVNMRVEIGLISNGSTLTITQIRYWVAILAQM*
Ga0164302_110560941	3300012961	Soil	DDENQRVNMRVEIGLISNGSTVTVTQIRYWVAILAQI*
Ga0134077_101439653	3300012972	Grasslands Soil	SQTVSIQTPPREFTVNVHSVEADWDDENQRVKVRVEIGVMSNGATVEITQIRYWVAILAQM*
Ga0164306_104505491	3300012988	Soil	TVNIHSVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQM*
Ga0157375_132404771	3300013308	Miscanthus Rhizosphere	TVNIHSVEADWDDENQRVNVRVEIGIIANGATVTITQIRYWIAILAQM*
Ga0157379_123430643	3300014968	Switchgrass Rhizosphere	QTTPREFTVNIHSVEADWDDENQRVKVRVEIGVIANGSTVTITQIRYWVAILAQI*
Ga0157376_118410081	3300014969	Miscanthus Rhizosphere	SVEADWDDENQRVNVRVEIGIIANGATVTITQIRYWIAILAQL*
Ga0132258_106347191	3300015371	Arabidopsis Rhizosphere	NIHSVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQI*
Ga0132258_110977201	3300015371	Arabidopsis Rhizosphere	EADWDDENQRVKVRVEIGLIANGATVTITQIRYSVAILAQM*
Ga0132256_1006873973	3300015372	Arabidopsis Rhizosphere	VNIHSVEADWDDENQKVKVRVEIGLIANGATVTITQIRYSVAILAQM*
Ga0132256_1028412961	3300015372	Arabidopsis Rhizosphere	QTSPREFTVNIHSVEADWDDENQKVNMRVEIGLIANGATVTITQIRYWVTILAQM*
Ga0132257_1032992341	3300015373	Arabidopsis Rhizosphere	TPREFTVNIHSVEADWDDENQRVNVRVEIGVIANGATVTITQIRYWVTILAQM*
Ga0132255_1021641151	3300015374	Arabidopsis Rhizosphere	FTVNIHSVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQI*
Ga0132255_1034114002	3300015374	Arabidopsis Rhizosphere	SVEADWDDENQRVKVRVEIGLIANGATVTITQIRYSVAILAQM*
Ga0132255_1035825282	3300015374	Arabidopsis Rhizosphere	VSVQTTPREYTVNIHSVEADWDDENQKVKERVEIGLIANGATVTVTQIRYSVAILAQM*
Ga0132255_1044333651	3300015374	Arabidopsis Rhizosphere	VSVQNTPREFTINIHSVEADWDDENQRVNMRVEIGLISNGTTVTITQIRYWVAILAQM*
Ga0182041_103647613	3300016294	Soil	VEADWDDENQRVNMRVEIGLIANGATVTVTQIRYSVAILAQM
Ga0184605_103955751	3300018027	Groundwater Sediment	HSVEADWDDENQRVKVRVEIGLISNGATVAITQIRYWVAILAQI
Ga0184625_101599823	3300018081	Groundwater Sediment	QTPPREFTVNIHSVEADWDDEDQRVKVRVEIGVHSNGATVEITQVRYWVAILAQM
Ga0066669_106096881	3300018482	Grasslands Soil	PPREFTVNVHSIEADWDDENQRVKVRVEIGVISNGATVEITQIRYWVAILAEM
Ga0066669_108588633	3300018482	Grasslands Soil	PPREFTVNVHSIEADWDDENQRVKVRVEIGVISDGATVEITQIRYWVAILAQM
Ga0137408_13908211	3300019789	Vadose Zone Soil	EADWDDENQRVKVRVEIGVMSNGATVEITQISYWVAILAQM
Ga0193693_10306162	3300019996	Soil	DWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQM
Ga0193693_10346841	3300019996	Soil	QIVSVQNTPREFTVNIHSVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQM
Ga0210402_119301652	3300021478	Soil	REFTVNVHSVEADWDDENQRVKVRVEIGVISNGATVEITQIRYWVAILAQM
Ga0247792_10433741	3300022880	Soil	SVQNTPREFTVNIHSVEADWDDENQRVNVRVEIGIIANGATVTITQIRYWIAILAQM
Ga0207666_10015811	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	SVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQI
Ga0207697_102615932	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	WDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQM
Ga0207654_108587251	3300025911	Corn Rhizosphere	IVSVQNTPREFTVNIHSVEADWDDENQRVNVRVEIGIIANGATVTITQIRYWIAILAQM
Ga0207693_100580291	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	TVNIHSVEADWDDENQRVKVRVEIGVIANGTTVTVTQIRYSVAILAQM
Ga0207693_101822831	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	REFTVNVHSVEADWDDENQRVKVRVEIGVISNGATIEITQIRYWVAILAQM
Ga0207700_115495971	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VQTPPREFTVNVHSVEADWDDENQRVKVRVEIGVISNGATIEITQIRYWVAILAQM
Ga0207679_119633832	3300025945	Corn Rhizosphere	ADWDDENQRVKVRVEIGVIANGTTVTVTQIRYSVAILAQM
Ga0207639_110471672	3300026041	Corn Rhizosphere	DWDDENQRVNMRVEIGLISNGTTVTITQIRYWVAILAQM
Ga0207648_114190311	3300026089	Miscanthus Rhizosphere	VNIHSVEADWDDENQRVNVRVEIGIIANGATVTITQIRYWMAILAQM
Ga0207676_115433881	3300026095	Switchgrass Rhizosphere	NIHSVEADWDDENQRVNMRVEIGLISNGTTVTITQIRYWVAILAQM
Ga0209469_10672503	3300026307	Soil	DWDDENQRVKVRVEIGVMSDGATVKITQIRYWVAILAQM
Ga0209266_12874461	3300026327	Soil	DENQRVKVRVEIGVISNGATVEITQIRYWVAILAEM
Ga0209375_10504315	3300026329	Soil	TPPREFTVNVHSIEADWDDENQRVKVRVEIGVISDGATVEITQIRYWVAILAQM
Ga0307280_100658362	3300028768	Soil	ADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQI
Ga0075404_114509791	3300030842	Soil	SVEADWDDENQRVKVRVEIGVMSDGATVEITQIRYWVAILAQM
Ga0075386_121800631	3300030916	Soil	NIHSVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQM
Ga0075373_116598971	3300030945	Soil	PREFTVNVHSVEADWDDENQRVKVRVEIGVISNGATVEITQIRYWVAILAQM
Ga0170834_1060150561	3300031057	Forest Soil	TVNIHSVEADWDDENQRVNMRVEIGLIANGSTVTITQIRYWVAILAQI
Ga0170822_121981152	3300031122	Forest Soil	ADWDDENQRVKVRVEIGVMSDGATVEITQIRYWVAILAQM
Ga0170824_1009143632	3300031231	Forest Soil	VHSVEADWDDENQRVKVRVEIGVISNGATVEITQIRYWVAILAQM
Ga0170824_1139016062	3300031231	Forest Soil	HSVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQM
Ga0170824_1282178461	3300031231	Forest Soil	FTVNIHSVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQI
Ga0170820_141840042	3300031446	Forest Soil	EADWDDENQRVKVRVEIGVISNGATVEITQIRYWVAILAQM
Ga0170818_1036366341	3300031474	Forest Soil	DENQRVKVRVEIGVISNGATIEITQIRYWVAILAQM
Ga0170818_1072299182	3300031474	Forest Soil	SQIVSVQNTPREFTVNIHSVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQ
Ga0170818_1075088371	3300031474	Forest Soil	NTPREFTVNIHSVEADWDDENQRVNMRVEIGLISNGSTVTITQIRYWVAILAQM
Ga0170818_1107345372	3300031474	Forest Soil	EFTINIHSVEADWDDENQRVNMRVEIGLISNGTTVTITQIRYWVAILAQM

Hidden Markov Model


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