NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F095591

Metagenome / Metatranscriptome Family F095591

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F095591
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 50 residues
Representative Sequence MAISNVKVVDTTSKYIVKSTGIGSETDQELVDANDLTGGTNESLVSLI
Number of Associated Samples 98
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 3.88 %
% of genes near scaffold ends (potentially truncated) 96.19 %
% of genes from short scaffolds (< 2000 bps) 95.24 %
Associated GOLD sequencing projects 96
AlphaFold2 3D model prediction Yes
3D model pTM-score0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (83.810 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(18.095 % of family members)
Environment Ontology (ENVO) Unclassified
(81.905 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(88.571 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 9.21%    β-sheet: 15.79%    Coil/Unstructured: 75.00%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.26
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF07230Portal_Gp20 11.43
PF03420Peptidase_S77 0.95



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A83.81 %
All OrganismsrootAll Organisms16.19 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000170|SI36aug09_135mDRAFT_c1026824Not Available953Open in IMG/M
3300000265|LP_A_09_P04_10DRAFT_1041360Not Available718Open in IMG/M
3300003583|JGI26253J51717_1038101Not Available957Open in IMG/M
3300003583|JGI26253J51717_1053197Not Available753Open in IMG/M
3300003620|JGI26273J51734_10033122All Organisms → Viruses → Predicted Viral1809Open in IMG/M
3300004273|Ga0066608_1059994Not Available1027Open in IMG/M
3300004278|Ga0066609_10083188Not Available1067Open in IMG/M
3300004831|Ga0069134_164715Not Available909Open in IMG/M
3300006339|Ga0068481_1320288Not Available744Open in IMG/M
3300006340|Ga0068503_10873977Not Available622Open in IMG/M
3300006735|Ga0098038_1270214Not Available533Open in IMG/M
3300006789|Ga0098054_1375481Not Available500Open in IMG/M
3300006793|Ga0098055_1176541Not Available816Open in IMG/M
3300006928|Ga0098041_1126201Not Available825Open in IMG/M
3300007345|Ga0070752_1151015Not Available955Open in IMG/M
3300007511|Ga0105000_1175126All Organisms → Viruses → Predicted Viral1250Open in IMG/M
3300007515|Ga0105021_1055166All Organisms → Viruses → Predicted Viral2738Open in IMG/M
3300007558|Ga0102822_1050672Not Available984Open in IMG/M
3300007864|Ga0105749_1126938Not Available584Open in IMG/M
3300007974|Ga0105747_1068900Not Available1068Open in IMG/M
3300007974|Ga0105747_1355466Not Available502Open in IMG/M
3300008219|Ga0114905_1205319Not Available634Open in IMG/M
3300009024|Ga0102811_1304699Not Available597Open in IMG/M
3300009026|Ga0102829_1074687All Organisms → Viruses → Predicted Viral1038Open in IMG/M
3300009026|Ga0102829_1246490Not Available587Open in IMG/M
3300009071|Ga0115566_10738664Not Available544Open in IMG/M
3300009409|Ga0114993_11190295Not Available537Open in IMG/M
3300009422|Ga0114998_10318678Not Available728Open in IMG/M
3300009422|Ga0114998_10570175Not Available532Open in IMG/M
3300009428|Ga0114915_1063694Not Available1156Open in IMG/M
3300009433|Ga0115545_1052296All Organisms → Viruses → Predicted Viral1567Open in IMG/M
3300009436|Ga0115008_10311898Not Available1116Open in IMG/M
3300009442|Ga0115563_1106085Not Available1190Open in IMG/M
3300009467|Ga0115565_10435843Not Available591Open in IMG/M
3300009476|Ga0115555_1403988Not Available544Open in IMG/M
3300009508|Ga0115567_10417163Not Available824Open in IMG/M
3300009622|Ga0105173_1013109Not Available1186Open in IMG/M
3300009705|Ga0115000_10880340Not Available548Open in IMG/M
3300009706|Ga0115002_10714300Not Available707Open in IMG/M
3300009786|Ga0114999_11187739Not Available544Open in IMG/M
3300010153|Ga0098059_1366435Not Available546Open in IMG/M
3300012953|Ga0163179_10574972Not Available942Open in IMG/M
3300017706|Ga0181377_1012524All Organisms → Viruses → Predicted Viral1999Open in IMG/M
3300017710|Ga0181403_1015973All Organisms → Viruses → Predicted Viral1603Open in IMG/M
3300017730|Ga0181417_1178821Not Available510Open in IMG/M
3300017732|Ga0181415_1032741Not Available1196Open in IMG/M
3300017733|Ga0181426_1097929Not Available588Open in IMG/M
3300017752|Ga0181400_1180771Not Available588Open in IMG/M
3300017753|Ga0181407_1077065Not Available853Open in IMG/M
3300017753|Ga0181407_1179539Not Available517Open in IMG/M
3300017756|Ga0181382_1042241Not Available1340Open in IMG/M
3300017767|Ga0181406_1162310Not Available669Open in IMG/M
3300017768|Ga0187220_1182420Not Available633Open in IMG/M
3300020166|Ga0206128_1165971Not Available876Open in IMG/M
3300020349|Ga0211511_1055053Not Available982Open in IMG/M
3300020399|Ga0211623_10154466Not Available802Open in IMG/M
3300020415|Ga0211553_10294429Not Available657Open in IMG/M
3300020431|Ga0211554_10372772Not Available663Open in IMG/M
3300020452|Ga0211545_10069861All Organisms → Viruses → Predicted Viral1673Open in IMG/M
3300020475|Ga0211541_10375372Not Available695Open in IMG/M
3300021068|Ga0206684_1075873Not Available1153Open in IMG/M
3300021185|Ga0206682_10063389All Organisms → Viruses → Predicted Viral1954Open in IMG/M
3300021334|Ga0206696_1220113Not Available564Open in IMG/M
3300022053|Ga0212030_1027040Not Available789Open in IMG/M
3300025128|Ga0208919_1148990Not Available726Open in IMG/M
3300025138|Ga0209634_1102652All Organisms → Viruses → Predicted Viral1261Open in IMG/M
3300025577|Ga0209304_1095979Not Available679Open in IMG/M
3300025645|Ga0208643_1036020All Organisms → Viruses → Predicted Viral1600Open in IMG/M
3300025645|Ga0208643_1059099Not Available1149Open in IMG/M
3300025663|Ga0209775_1030461All Organisms → Viruses → Predicted Viral1684Open in IMG/M
3300025695|Ga0209653_1191731Not Available565Open in IMG/M
3300025816|Ga0209193_1120985Not Available633Open in IMG/M
3300025849|Ga0209603_1267386Not Available614Open in IMG/M
3300025881|Ga0209309_10308737Not Available710Open in IMG/M
3300026267|Ga0208278_1054008Not Available979Open in IMG/M
3300027196|Ga0208438_1073573Not Available556Open in IMG/M
3300027406|Ga0208965_1027023All Organisms → Viruses → Predicted Viral1431Open in IMG/M
3300027571|Ga0208897_1150428Not Available576Open in IMG/M
3300027582|Ga0208971_1019176All Organisms → Viruses → Predicted Viral2341Open in IMG/M
3300027631|Ga0208133_1050832Not Available1002Open in IMG/M
3300027699|Ga0209752_1049090All Organisms → Viruses → Predicted Viral1405Open in IMG/M
3300027704|Ga0209816_1250315Not Available558Open in IMG/M
3300027771|Ga0209279_10019103All Organisms → Viruses → Predicted Viral2131Open in IMG/M
3300027779|Ga0209709_10260157Not Available764Open in IMG/M
3300027883|Ga0209713_10257985Not Available1167Open in IMG/M
3300028008|Ga0228674_1256304Not Available543Open in IMG/M
3300028192|Ga0257107_1207254Not Available556Open in IMG/M
3300028194|Ga0257106_1124261Not Available919Open in IMG/M
3300028274|Ga0257119_1082281Not Available798Open in IMG/M
3300028280|Ga0228646_1072000Not Available852Open in IMG/M
3300028488|Ga0257113_1183467Not Available618Open in IMG/M
3300028535|Ga0257111_1102291Not Available903Open in IMG/M
3300029448|Ga0183755_1103453Not Available554Open in IMG/M
3300031510|Ga0308010_1180943Not Available771Open in IMG/M
3300031598|Ga0308019_10247294Not Available677Open in IMG/M
3300031598|Ga0308019_10278123Not Available628Open in IMG/M
3300031774|Ga0315331_10565387Not Available817Open in IMG/M
3300032032|Ga0315327_10971668Not Available508Open in IMG/M
3300032073|Ga0315315_10230839All Organisms → Viruses → Predicted Viral1726Open in IMG/M
3300032088|Ga0315321_10587917Not Available661Open in IMG/M
3300032130|Ga0315333_10322430Not Available731Open in IMG/M
3300032360|Ga0315334_11226471Not Available647Open in IMG/M
3300032373|Ga0316204_10603618Not Available805Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine18.10%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine10.48%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine9.52%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater9.52%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine7.62%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater7.62%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine4.76%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine3.81%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous3.81%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.81%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water2.86%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.90%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.90%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine1.90%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.90%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.90%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.90%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic0.95%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine0.95%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.95%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.95%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.95%
Surface SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Surface Seawater0.95%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.95%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000170Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 135mEnvironmentalOpen in IMG/M
3300000265Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10EnvironmentalOpen in IMG/M
3300003583Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNAEnvironmentalOpen in IMG/M
3300003620Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNAEnvironmentalOpen in IMG/M
3300004273Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_135mEnvironmentalOpen in IMG/M
3300004278Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150mEnvironmentalOpen in IMG/M
3300004831Marine surface microbial communities from the North Atlantic Ocean - filtered matterEnvironmentalOpen in IMG/M
3300006339Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500mEnvironmentalOpen in IMG/M
3300006340Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770mEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007511Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate bEnvironmentalOpen in IMG/M
3300007515Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate bEnvironmentalOpen in IMG/M
3300007558Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733EnvironmentalOpen in IMG/M
3300007864Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461B_3.0umEnvironmentalOpen in IMG/M
3300007974Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2umEnvironmentalOpen in IMG/M
3300008219Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05EnvironmentalOpen in IMG/M
3300009024Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705EnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009422Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138EnvironmentalOpen in IMG/M
3300009428Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009442Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519EnvironmentalOpen in IMG/M
3300009467Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530EnvironmentalOpen in IMG/M
3300009476Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300009622Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300012953Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 MetagenomeEnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017710Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28EnvironmentalOpen in IMG/M
3300017730Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13EnvironmentalOpen in IMG/M
3300017732Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11EnvironmentalOpen in IMG/M
3300017733Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017756Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017768Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020349Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289006-ERR315859)EnvironmentalOpen in IMG/M
3300020399Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)EnvironmentalOpen in IMG/M
3300020415Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166)EnvironmentalOpen in IMG/M
3300020431Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)EnvironmentalOpen in IMG/M
3300020452Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)EnvironmentalOpen in IMG/M
3300020475Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)EnvironmentalOpen in IMG/M
3300021068Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021334Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300024336 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_135_MGEnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025577Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025663Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_135m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025695Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025816Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)EnvironmentalOpen in IMG/M
3300025849Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)EnvironmentalOpen in IMG/M
3300025881Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)EnvironmentalOpen in IMG/M
3300026267Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259 (SPAdes)EnvironmentalOpen in IMG/M
3300027196Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 (SPAdes)EnvironmentalOpen in IMG/M
3300027406Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027571Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 (SPAdes)EnvironmentalOpen in IMG/M
3300027582Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_18_M0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027631Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)EnvironmentalOpen in IMG/M
3300027699Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_250m (SPAdes)EnvironmentalOpen in IMG/M
3300027704Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027771Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300027883Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028008Seawater microbial communities from Monterey Bay, California, United States - 1D_rEnvironmentalOpen in IMG/M
3300028192Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500mEnvironmentalOpen in IMG/M
3300028194Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10mEnvironmentalOpen in IMG/M
3300028274Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_200mEnvironmentalOpen in IMG/M
3300028280Seawater microbial communities from Monterey Bay, California, United States - 58DEnvironmentalOpen in IMG/M
3300028488Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320mEnvironmentalOpen in IMG/M
3300028535Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500mEnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300031510Marine microbial communities from water near the shore, Antarctic Ocean - #129EnvironmentalOpen in IMG/M
3300031598Marine microbial communities from water near the shore, Antarctic Ocean - #284EnvironmentalOpen in IMG/M
3300031656Marine microbial communities from water near the shore, Antarctic Ocean - #67EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300032032Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M
3300032130Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915EnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M
3300032373Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
SI36aug09_135mDRAFT_102682413300000170MarineMAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTNKSLVSLIECYYIIE
LP_A_09_P04_10DRAFT_104136033300000265MarineMAIDNEIVVNTTSKYIVKSTGIKDEKDQELVDANKLTGANNESL
JGI26253J51717_103810113300003583MarineMAISNVKVVNTASKYIVKSKGIGSETDQVLVNANDLTGGTNKSLVSLIECYYIIESI
JGI26253J51717_105319713300003583MarineMAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTNKSLVSLIECYYIIESIGS
JGI26273J51734_1003312213300003620MarineMAISNVKVVNTASKYIVKSKGIGSETDQVLVNANDLTGGTNKSLVSL
Ga0066608_105999413300004273MarineMKNTEVVDTGSKYIVKTTGVGSETNEVLVNAETELTGGTDGSKVSLIECYY
Ga0066609_1008318843300004278MarineMAISNVKVVNTTSKYIVKSTGTKSETNQELVDAENLTEGTDGSKVSLIEC
Ga0069134_16471513300004831Surface SeawaterMAISNVTVVDTTSKYIVKSTGIGSETDQELVDANALTGGTNESLVCLIECYYLIEGT
Ga0068481_132028813300006339MarineMSITNVTVVDTTSKYIVKSTGIRLEDDQIVVNAKELTGGTNESKVSLIECYYLIE
Ga0068503_1087397713300006340MarineMKNTEVVDTTSKYIVKSTGIGSETNLGRWLVDAEELTGGTDGSKVSLIECYY
Ga0098038_127021423300006735MarineMAISNVKVVNTTSKYIVKSTGIGSETDQELVDANDL
Ga0098054_137548113300006789MarineMAISNEKVVDTTSKYIVKSKGFGSETNQVLVNANDLTGGTNKSLVSLIECY
Ga0098055_117654133300006793MarineMAISNEKVVDTTSKYIVKSKGFGSETNQVLVNANDLTGGTNKSLVSLIE
Ga0098041_112620133300006928MarineMAIDNDEVVNTPSKYIVKSTGTGSETDQVLVNANDLKDGTNE
Ga0070752_115101543300007345AqueousMAISNEEVVNTTSKYIVKSTGTKNETDQELVDANALTGGTNESLVCLIECFYLIEGTG
Ga0105000_117512653300007511MarineMENTEVVDTTSKYIVKSTGIGSETNLGKWLVDAEELTGGTDKSKVSLIE*
Ga0105021_105516653300007515MarineMAISNVTVVDTTSKYIVKSTGIGGEVVSLRNDQELVNAEELTGGTNKSKV
Ga0102822_105067213300007558EstuarineMNNTEVVNTASKYIVKSTGTKSETNQELVDAENLTEGTDGSKVSLIECYYL
Ga0105749_112693813300007864Estuary WaterMAISNVKVVNTTSKYIVKSTGTKSETNQELVDAENL
Ga0105747_106890043300007974Estuary WaterMAINNASVVNTTSKYIVKSKGFGSETNQVLVNANDLTGGTNKSLVSLIEC
Ga0105747_135546613300007974Estuary WaterMTISNEKVVDTTSKYIVKSTGTGSETDQELVDASKLTEGTDGSKVSLIE
Ga0114905_120531913300008219Deep OceanMAINNASVVNTTSKYIVKSTGIGSETDQELVDANALTGGTNESLVCLI
Ga0102811_130469923300009024EstuarineMAISNEEVVNTASKYIVKSTGTKNETDQELVDANALTGG
Ga0102829_107468713300009026EstuarineMAISNVEVVNTTSKYIVKSTGTKSETDQELVDAEKLTEGTDG
Ga0102829_124649013300009026EstuarineMNNTEVVNTTSKYIVKTTGIGSETNQELVDAEKLAEGTDGSKVSLIECYY
Ga0115566_1073866423300009071Pelagic MarineMAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTNKS
Ga0114993_1119029513300009409MarineMSITNVTVVDTTSKYIVKSTGIRLEDDQIVVNAKELTGGTNESKVSLIE
Ga0114998_1031867833300009422MarineMDNTEVVNNTSKYIVKTTGIGSETNQELVDAEKLAEGTDGSKVSLIECYYLIEGTG
Ga0114998_1057017523300009422MarineMNNTEVVNNTSKYIVKTTGIGSETNEILVDAEKLTEGTDGSKVSLIECYYIC*
Ga0114915_106369413300009428Deep OceanMAIKNVEVVNIASKYIVKSTGIKDEKDQELVDANKLTGADNESLVSLI
Ga0115545_105229613300009433Pelagic MarineMAINNASVVNTTSKYIVKSTGIGSETDQELVDANALTGGTNESLVCLIECFYLIE
Ga0115008_1031189843300009436MarineMAIKNVKVVNTTSKYIVKSTGTKSETDQELVDAEKLTEGTDGSK
Ga0115563_110608543300009442Pelagic MarineMKNTEVVDTASKYIVKTTGAGSETNEVLVNAETELTGGTTGSKVSLIECYYLI
Ga0115565_1043584323300009467Pelagic MarineMNNTEVVDTASKYIVKTTGAGSETNEVLVNAETELTGGTTGSKVSLIECYYLIEGTGI
Ga0115555_140398823300009476Pelagic MarineMAISNVKVVNTASKYIVKSKGIGSETDQVLVNANDLTGGTNKS
Ga0115567_1041716333300009508Pelagic MarineMAIKNVKVVNTTSKYIVKSTGTKSETDQELVDAEKLTEGTDGSKV
Ga0105173_101310913300009622Marine OceanicMAISNAIVVNSTSKYIVKSTGKGSEKNQELVDANKLTEGTDGSLVSLIECY
Ga0115000_1088034023300009705MarineMAISNVKVVNTTSKYIVKSTGTKSETDQVLVDANNLTGGTNQSLVCLIECYYLIEG
Ga0115002_1071430013300009706MarineMAITNVPVVDTISKYNVKSTGIGSESNQVLVDASKLYQATNESLVSLI
Ga0114999_1118773913300009786MarineMAISNVEVVNTTSKYIVKSTGTKSETDQELVDAEKLTEGTNGSKVSLIEC
Ga0098059_136643523300010153MarineMAISNEKVVDTTSKYIVKSTGIGSETDQELVDANDLTGGTNESLVCLIECFYL
Ga0163179_1057497243300012953SeawaterMAINNDAVVNTTSKYIVKSTGTKSETDQELVDAEKLTKGTDGSK
Ga0181377_101252453300017706MarineMAISNVKVVNTTSKYIVTSKGFGSETNQVLVNANDLTGGTNKSLVSL
Ga0181403_101597313300017710SeawaterMAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTNKSLVS
Ga0181417_117882113300017730SeawaterMNNTEVVNTASKYIVKTTGAGSETDQVLVNANDLTGGTNKSLVSLIEC
Ga0181415_103274113300017732SeawaterMNNTEVVNTASKYIVKTTGAGSETDQVLVNANDLTGGTNESLICLIECYYLIEGT
Ga0181426_109792923300017733SeawaterMAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTNKSLVSLIECYYIIESI
Ga0181400_118077113300017752SeawaterMNNTEVVNTTSKYIVKTTGIGSETNQELVDAEKLAEGTDGSKVSLIECYYLIEGTGT
Ga0181407_107706533300017753SeawaterMAISNVKVVNTTSKYIVKSTGTKSETNQELVDAENLTEGTDGSKVSLIECYYLIEGTGTL
Ga0181407_117953913300017753SeawaterMKNTEVVDTASKYIVKTTGAGSETNEVLVNAETELIGGTTGSKVSLI
Ga0181382_104224153300017756SeawaterMAISNVKVVNTTSKYIVKSTGTKSETDQVLVDANNLTGGT
Ga0181406_116231033300017767SeawaterMAISNVEVVNTTSKYIVKSTGTKSETDQELVDAEKLTKGTD
Ga0187220_118242013300017768SeawaterMDNTEVVNNTSKYIVKTTGIGSETNQELVDAEKLAEGTDGSKVSLIECYY
Ga0206128_116597133300020166SeawaterMKNTEVVDTASKYIVKTTGAGSETNEVLVNAETELTGGTTGSKVSLIECYYLIEGTGILT
Ga0211511_105505343300020349MarineMAISNVTVVDTTSKYIVKSTGIGSETDQELVDANALTGGTNESLVCLI
Ga0211623_1015446633300020399MarineMAISNVTVVDTTSKYIVKSTGIGSEAVSLRNDQTLVDAKELTGGTNESKVSLIECYHLID
Ga0211553_1029442913300020415MarineMAIKNVKVVNTTSKYIVKSTGTKSETDQELVDAEKLTEGTDGSKVSLIECYYL
Ga0211554_1037277213300020431MarineMAISNEEVVNTASKYIVKSTGTKNETDQELVDANALTGGTNESLVCLIECFYLIEGIGKL
Ga0211545_1006986153300020452MarineMAINNDAVVNTTSKYIVKSTGTGSETDQVLVNANDLKDGTNESLVCLIECY
Ga0211541_1037537213300020475MarineMAINNDAVVNTTSKYIVKSTGTGSETDQVLVNANDLTDGTNESLVCLIECYH
Ga0206684_107587313300021068SeawaterMAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTNKSLVSLIECYYIIESVGSVEGK
Ga0206682_1006338913300021185SeawaterMAIENTKVVDITSKYIVKSTGIGSETNQIIVDAEKLEDGTNKSLV
Ga0206696_122011323300021334SeawaterMSIKNVTVVDTTSKYIVKSTGIGSETDQELVDAVKLTDGNNESLVSLIECYREE
Ga0212030_102704013300022053AqueousMKNTEVVDTASKYIVKTTGAGSETNEVLVNAETELTGGTDGSKVSLIECYYLI
(restricted) Ga0233447_109906613300024336SeawaterMAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDL
Ga0208919_114899033300025128MarineMNNTEVVNTASKYIVKSTGIGSEKISLRNDQELVNASDLTGGTNESKVSLIECFYL
Ga0209634_110265243300025138MarineMAISNVKVVNTTSKYIVKSTGTKSETNQELVDAENLTEGTDGSKVSLIECYYLIEGTGTLTI
Ga0209304_109597913300025577Pelagic MarineMAINNASVVNTTSKYIVKSTGIGSETDQELVDANALTGGTN
Ga0208643_103602013300025645AqueousMNNTEVVDTASKYIVKTTGAGSETNEVLVNAETELTGGTDGSKVSLI
Ga0208643_105909913300025645AqueousMKNTEVVDTASKYIVKTTGVGSETNEVLVNAETELTGGTTGSKVSLIECYYL
Ga0209775_103046113300025663MarineMAISNVEVVNTTSKYIVKSTGTKSETNQELVDAENLTEGTDGSKVSLIECYYLIEGTGTL
Ga0209653_119173123300025695MarineMAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTN
Ga0209193_112098523300025816Pelagic MarineMAINNASVVNTTSKYIVKSKGFGSETNQVLVNANDLTGGTNKSLVSLIECYYIIESVGSV
Ga0209603_126738623300025849Pelagic MarineMAISNVEVVNTTSKYIVKSTGTKSETDQELVDAEKLTEGTDGSKVSLIECYYLIEGTG
Ga0209309_1030873733300025881Pelagic MarineMAINNASVVNTTSKYIVKSTGIGSETDQELVDANALTGGTNESLVCLIECY
Ga0208278_105400813300026267MarineMAISNVTVVDTSTKHIVRSKGIGSEEDQIVVDAFELTGGNNESLVSLIECYYLIE
Ga0208438_107357313300027196EstuarineMAISNVKVVNTTSKYIVKSTGTKSETNQELVDAEN
Ga0208965_102702353300027406MarineMAISNVTVVDTTSKHIVKSTGIGGESNLGRWLVDAKELTGGTNESKVSLIECFY
Ga0208897_115042813300027571EstuarineMAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTNKSLVSLIECYY
Ga0208971_101917613300027582MarineMNNTEVVNTASKYIVKTTGAGSETDQVLVNANDLTGGTNESLICLIECYYLIEG
Ga0208133_105083243300027631EstuarineMAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTNKSLVSLIECYYLIEGTG
Ga0209752_104909053300027699MarineMAISNVTVVDTTSKYIVKSTGIGGETDQELVDAKELTGGTNESKVSL
Ga0209816_125031523300027704MarineMTISNTSVVDTTSKYIVKSTGIGSETNQIIVDAEKLTGANNKSLVSMIECYFLIEGKGALYI
Ga0209279_1001910353300027771MarineMNNTGVVTSTSKYIVKSTGRGSETNQELVNANKLSGGTNQSLVSLIECYYLIESVGSTAG
Ga0209709_1026015713300027779MarineMNNTEVVNTTSKYIVKTTGIGSETNEILVDAEELTEGTDGSKVSLIECYYL
Ga0209713_1025798543300027883MarineMAISNVKVVNTASKYIVKSKGIGSETDQVLVNANDLTGGTNKSL
Ga0228674_125630423300028008SeawaterMKNTEVVDTASKYIVKTTGAGSETNEVLVNAETELTGGTTGSKVSLIECY
Ga0257107_120725423300028192MarineMAISNVTVVNTASKYIVKSTGIGSEDDQIVVNAKELTGGTNESKVSLIECYY
Ga0257106_112426143300028194MarineMAISNVKVVNTTSKYIVKSTGTKSETDQVLVDANNLTGGTNQ
Ga0257119_108228113300028274MarineMAISNVKVVNTASKYIVKSKGIGSETDQVLVNANDLTGGTNKSLVSLIECYYIIESIGSIEG
Ga0228646_107200013300028280SeawaterMNNTEVVNTASKYIVKTTGAGSETDQVLVNANDLTGGTNESLICLIECYN
Ga0257113_118346713300028488MarineMENVTVVDTTSKYIVKSTGIGSETDEELVNANDLTGGTNQSKVSLIECYHLIEGT
Ga0257111_110229113300028535MarineMAIDNTEVVNTASKYIVKSTGIGSEDDQIVVNAKELTGGTNES
Ga0183755_110345313300029448MarineMAISNVKVVDTTSKYIVKSTGIGSETDQELVDANDLTGGTNESLVSLI
Ga0308010_118094333300031510MarineMAISNAIVVNSTSKYIVKSTGKGSESNQELVDANKLTGANN
Ga0308019_1024729433300031598MarineMTISNTSVVDTTSKYIVKSTGIGSETNQIIVDAEKLTGANNKSLVSMIEC
Ga0308019_1027812323300031598MarineMAIKNDEVVNSTSKYIVKSTGKASETNGILVDANKLTGADNESLVSLIECYY
Ga0308005_1013918313300031656MarineMAIKNVEVVNIASKYIVKSTGIKDEKDQELVDANKLTGA
Ga0315331_1056538713300031774SeawaterMAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTNKSLVSLIECYYII
Ga0315327_1097166813300032032SeawaterMAIDNEIVVNTTSKYIVKSTGIKDEKDQELVDANKLTGADNESLVSLIE
Ga0315315_1023083913300032073SeawaterMAISNVKVVNTTSKYIVKSTGTKSETNQELVDAENLTEGTDGSKVSLIECYYL
Ga0315321_1058791713300032088SeawaterMENTEVVNTTSKYIVKSTGIGSETNLGKWLVDANDLIGGTNESLVSLI
Ga0315333_1032243033300032130SeawaterMAISNVKVVNTASKYIVKSKGIGSETNQVLVNANDLTGGTNK
Ga0315334_1122647113300032360SeawaterMKNTEVVDTTSKYIVKSTGIGSETDEELVNANDLTGGTNQSKVSLIECYHLIEGTGT
Ga0316204_1060361813300032373Microbial MatMKNTEVVDTASKYIVKTTGAGSETNEVLVNAETELTGGTTGSKVSLIECYYLIEGTGI


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.