NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095563

Metagenome / Metatranscriptome Family F095563

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095563
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 43 residues
Representative Sequence MNTIKLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Number of Associated Samples 88
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 66.35 %
% of genes near scaffold ends (potentially truncated) 37.14 %
% of genes from short scaffolds (< 2000 bps) 51.43 %
Associated GOLD sequencing projects 78
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (80.952 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(21.905 % of family members)
Environment Ontology (ENVO) Unclassified
(71.429 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(88.571 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 56.34%    β-sheet: 0.00%    Coil/Unstructured: 43.66%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF13673Acetyltransf_10 12.38
PF00082Peptidase_S8 7.62
PF09694Gcw_chp 6.67
PF00127Copper-bind 5.71
PF06035Peptidase_C93 4.76
PF11953DUF3470 3.81
PF05488PAAR_motif 1.90
PF01764Lipase_3 1.90
PF00970FAD_binding_6 1.90
PF00578AhpC-TSA 1.90
PF00175NAD_binding_1 1.90
PF00583Acetyltransf_1 1.90
PF13847Methyltransf_31 0.95
PF03332PMM 0.95
PF10902WYL_2 0.95
PF07486Hydrolase_2 0.95
PF03567Sulfotransfer_2 0.95
PF02675AdoMet_dc 0.95
PF13508Acetyltransf_7 0.95
PF08241Methyltransf_11 0.95
PF00733Asn_synthase 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG3672Predicted transglutaminase-like proteinPosttranslational modification, protein turnover, chaperones [O] 4.76
COG4104Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretionIntracellular trafficking, secretion, and vesicular transport [U] 1.90
COG0561Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatasesCoenzyme transport and metabolism [H] 0.95
COG1586S-adenosylmethionine decarboxylaseAmino acid transport and metabolism [E] 0.95
COG3773Cell wall hydrolase CwlJ, involved in spore germinationCell cycle control, cell division, chromosome partitioning [D] 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A80.95 %
All OrganismsrootAll Organisms19.05 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10001315Not Available20121Open in IMG/M
3300000101|DelMOSum2010_c10029784All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → Polynucleobacter antarcticus3020Open in IMG/M
3300000168|LPjun09P1210mDRAFT_c1000974Not Available3281Open in IMG/M
3300000928|OpTDRAFT_10049715Not Available3910Open in IMG/M
3300001460|JGI24003J15210_10013023Not Available3307Open in IMG/M
3300001589|JGI24005J15628_10077048All Organisms → cellular organisms → Bacteria1185Open in IMG/M
3300004448|Ga0065861_1197422Not Available1116Open in IMG/M
3300005234|Ga0066613_1406530Not Available675Open in IMG/M
3300005433|Ga0066830_10000084All Organisms → cellular organisms → Bacteria12832Open in IMG/M
3300005601|Ga0070722_10075991Not Available1248Open in IMG/M
3300005837|Ga0078893_12927843Not Available590Open in IMG/M
3300005942|Ga0070742_10009023All Organisms → cellular organisms → Bacteria → Proteobacteria2599Open in IMG/M
3300006357|Ga0075502_1461954Not Available772Open in IMG/M
3300006400|Ga0075503_1592765Not Available615Open in IMG/M
3300006484|Ga0070744_10073130Not Available995Open in IMG/M
3300006810|Ga0070754_10158920Not Available1075Open in IMG/M
3300006869|Ga0075477_10218362Not Available776Open in IMG/M
3300007276|Ga0070747_1142340Not Available866Open in IMG/M
3300008470|Ga0115371_10772916Not Available6304Open in IMG/M
3300008470|Ga0115371_11254977Not Available1189Open in IMG/M
3300008470|Ga0115371_11363826Not Available996Open in IMG/M
3300009058|Ga0102854_1011032Not Available2617Open in IMG/M
3300009059|Ga0102830_1261904Not Available505Open in IMG/M
3300009079|Ga0102814_10256086Not Available953Open in IMG/M
3300009172|Ga0114995_10001179Not Available18571Open in IMG/M
3300009422|Ga0114998_10010910Not Available5903Open in IMG/M
3300009426|Ga0115547_1227982Not Available584Open in IMG/M
3300009428|Ga0114915_1011369Not Available3381Open in IMG/M
3300009428|Ga0114915_1182346Not Available584Open in IMG/M
3300009433|Ga0115545_1092860Not Available1100Open in IMG/M
3300009437|Ga0115556_1244132Not Available639Open in IMG/M
3300009443|Ga0115557_1084225Not Available1364Open in IMG/M
3300009495|Ga0115571_1001622Not Available15626Open in IMG/M
3300009496|Ga0115570_10057797Not Available2028Open in IMG/M
3300009512|Ga0115003_10059533All Organisms → cellular organisms → Bacteria → Proteobacteria2403Open in IMG/M
3300009705|Ga0115000_10003501Not Available13130Open in IMG/M
3300010883|Ga0133547_11238600Not Available1422Open in IMG/M
3300014903|Ga0164321_10222881Not Available868Open in IMG/M
3300017697|Ga0180120_10316486Not Available622Open in IMG/M
3300017706|Ga0181377_1049103Not Available813Open in IMG/M
3300017709|Ga0181387_1016632Not Available1422Open in IMG/M
3300017714|Ga0181412_1075777Not Available815Open in IMG/M
3300017719|Ga0181390_1036068Not Available1518Open in IMG/M
3300017719|Ga0181390_1091319Not Available826Open in IMG/M
3300017757|Ga0181420_1168691Not Available647Open in IMG/M
3300017772|Ga0181430_1196383Not Available577Open in IMG/M
3300017782|Ga0181380_1246302Not Available594Open in IMG/M
3300017786|Ga0181424_10397901Not Available561Open in IMG/M
3300017824|Ga0181552_10002175Not Available14461Open in IMG/M
3300017950|Ga0181607_10037760All Organisms → cellular organisms → Bacteria3402Open in IMG/M
3300018036|Ga0181600_10357882All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300020165|Ga0206125_10006057All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_299959Open in IMG/M
3300020182|Ga0206129_10009917Not Available8866Open in IMG/M
3300020185|Ga0206131_10005188Not Available13896Open in IMG/M
3300020194|Ga0181597_10034557Not Available3411Open in IMG/M
3300020347|Ga0211504_1002762All Organisms → cellular organisms → Bacteria → Proteobacteria6972Open in IMG/M
3300020347|Ga0211504_1008301All Organisms → cellular organisms → Bacteria → Proteobacteria3269Open in IMG/M
3300020347|Ga0211504_1076775Not Available766Open in IMG/M
3300020431|Ga0211554_10004355Not Available9475Open in IMG/M
3300020438|Ga0211576_10001400Not Available18510Open in IMG/M
3300020438|Ga0211576_10005459All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → unclassified Bdellovibrionales → Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_298537Open in IMG/M
3300020438|Ga0211576_10024756Not Available3596Open in IMG/M
3300020438|Ga0211576_10109518Not Available1520Open in IMG/M
3300020469|Ga0211577_10361336Not Available905Open in IMG/M
3300021085|Ga0206677_10003358All Organisms → cellular organisms → Bacteria → Proteobacteria13516Open in IMG/M
3300021368|Ga0213860_10065696Not Available1563Open in IMG/M
3300021371|Ga0213863_10231128Not Available800Open in IMG/M
3300021375|Ga0213869_10040686All Organisms → cellular organisms → Bacteria2473Open in IMG/M
3300022922|Ga0255779_1297376Not Available622Open in IMG/M
3300022926|Ga0255753_1307512Not Available611Open in IMG/M
(restricted) 3300022931|Ga0233433_10350683Not Available592Open in IMG/M
3300024346|Ga0244775_10074573Not Available2905Open in IMG/M
3300024348|Ga0244776_10020991All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → Polynucleobacter antarcticus5383Open in IMG/M
3300024433|Ga0209986_10050573Not Available2466Open in IMG/M
3300025120|Ga0209535_1020477Not Available3359Open in IMG/M
3300025138|Ga0209634_1010601All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → Woeseia → unclassified Woeseia → Woeseia sp.5567Open in IMG/M
3300025138|Ga0209634_1016178All Organisms → cellular organisms → Bacteria4290Open in IMG/M
3300025138|Ga0209634_1072487Not Available1612Open in IMG/M
3300025151|Ga0209645_1000004Not Available128169Open in IMG/M
3300025168|Ga0209337_1301970Not Available578Open in IMG/M
3300025276|Ga0208814_1002633All Organisms → cellular organisms → Bacteria7664Open in IMG/M
3300025276|Ga0208814_1003453Not Available6498Open in IMG/M
3300025276|Ga0208814_1016150All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales2563Open in IMG/M
3300025626|Ga0209716_1113441Not Available751Open in IMG/M
3300025652|Ga0208134_1093769Not Available843Open in IMG/M
3300025653|Ga0208428_1055987Not Available1185Open in IMG/M
3300025704|Ga0209602_1012031Not Available4993Open in IMG/M
3300025822|Ga0209714_1144624Not Available611Open in IMG/M
3300025853|Ga0208645_1093115Not Available1269Open in IMG/M
3300025853|Ga0208645_1284538Not Available528Open in IMG/M
3300025881|Ga0209309_10078056Not Available1864Open in IMG/M
3300027780|Ga0209502_10007446Not Available7543Open in IMG/M
3300027780|Ga0209502_10015019Not Available4887Open in IMG/M
3300027788|Ga0209711_10003265Not Available13771Open in IMG/M
3300027791|Ga0209830_10000979Not Available26626Open in IMG/M
3300027813|Ga0209090_10020937All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales3827Open in IMG/M
3300027967|Ga0209272_10245756Not Available617Open in IMG/M
3300028008|Ga0228674_1009581Not Available4513Open in IMG/M
3300028197|Ga0257110_1319262Not Available553Open in IMG/M
3300028290|Ga0247572_1159128Not Available565Open in IMG/M
3300031519|Ga0307488_10064490Not Available2778Open in IMG/M
3300031606|Ga0302119_10004518All Organisms → cellular organisms → Bacteria6108Open in IMG/M
3300031701|Ga0302120_10055414Not Available1668Open in IMG/M
3300032088|Ga0315321_10024671Not Available4302Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine21.90%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine9.52%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous8.57%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine8.57%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater7.62%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh5.71%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean4.76%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater4.76%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine3.81%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine2.86%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater2.86%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment2.86%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment1.90%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.90%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.90%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.90%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.95%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine0.95%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.95%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.95%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water0.95%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.95%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.95%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.95%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000168Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 10mEnvironmentalOpen in IMG/M
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001589Marine viral communities from the Pacific Ocean - LP-40EnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300005234Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_100m_RNA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005433Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45BEnvironmentalOpen in IMG/M
3300005601Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.1EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300005942Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757EnvironmentalOpen in IMG/M
3300006357Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006400Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006869Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300009058Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02EnvironmentalOpen in IMG/M
3300009059Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009422Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138EnvironmentalOpen in IMG/M
3300009426Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420EnvironmentalOpen in IMG/M
3300009428Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009437Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414EnvironmentalOpen in IMG/M
3300009443Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300014903Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cmEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018036Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020182Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020194Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020431Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020469Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021368Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300022922Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaGEnvironmentalOpen in IMG/M
3300022926Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaGEnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
33000243480.2um to 3um size fraction coassemblyEnvironmentalOpen in IMG/M
3300024433Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025276Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025704Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)EnvironmentalOpen in IMG/M
3300025822Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025881Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)EnvironmentalOpen in IMG/M
3300027780Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)EnvironmentalOpen in IMG/M
3300027788Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)EnvironmentalOpen in IMG/M
3300027791Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)EnvironmentalOpen in IMG/M
3300027813Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)EnvironmentalOpen in IMG/M
3300027967Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2 (SPAdes)EnvironmentalOpen in IMG/M
3300028008Seawater microbial communities from Monterey Bay, California, United States - 1D_rEnvironmentalOpen in IMG/M
3300028197Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10mEnvironmentalOpen in IMG/M
3300028290Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 25R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031606Marine microbial communities from Western Arctic Ocean, Canada - AG5_TmaxEnvironmentalOpen in IMG/M
3300031701Marine microbial communities from Western Arctic Ocean, Canada - AG5_BottomEnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_10001315233300000101MarineMNTIKLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM*
DelMOSum2010_1002978473300000101MarineMNTIKLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM*
LPjun09P1210mDRAFT_100097443300000168MarineMGSDVEMRAVALTIIDKSGIFKKVDQKLEALCYAMLWGSWFLCLTQLF*
OpTDRAFT_1004971553300000928Freshwater And MarineMNTIKLVIDKSGIFKKVDQKMEALCYAMLWGSMFLCMSQLAYM*
JGI24003J15210_1001302373300001460MarineMNTIKLVIDKSGIFKKVDQKLEVLCYAMLWGSMFLCMSQIFTL*
JGI24005J15628_1007704823300001589MarineMKAVALTIIDKSGITKKVTEKVETLCYAMLWGSWFICLAQIF*
Ga0065861_111349333300004448MarineMTIIAKIVDKTGIFKKLDQKAETFCYALLWSSMFICLAQMF*
Ga0065861_119742233300004448MarineMNTIKLVIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAYM*
Ga0066613_140653033300005234MarineMNTIRLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM*
Ga0066830_1000008443300005433MarineMNTIKLVIDKSGIFKKVDQKIETLCYAMLWGSMFVCMSQLAYM*
Ga0070722_1007599133300005601Marine SedimentMNTIKLVINKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM*
Ga0078893_1292784333300005837Marine Surface WaterMNTIKLVIDKSGIFKKVDQKVEVLCYAMLWGSMFVCMSQLAYM*
Ga0070742_1000902333300005942EstuarineMNTIRLVVDKSGILKKIDHKVEILCYAMLWGAWFLCLAQL*
Ga0075502_146195413300006357AqueousMNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLTYM*
Ga0075503_159276513300006400AqueousMNTIRLVIDKSGIFKKVDQKLEALCYTMLWGSMFLCMSQLAYM*
Ga0070744_1007313013300006484EstuarineMKTIALTIIDKSGILKKVDQKVEALCYAMLWGSWFLCLTQLF*
Ga0070754_1015892033300006810AqueousMNTIKVVIDKTGIFKKVDQKLEALCYAMLWGSMFLCMSQLTYM*
Ga0075477_1021836213300006869AqueousMNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLAYM*
Ga0070747_114234033300007276AqueousMNTIKLVINKSGIFKKVDQKLEALCYAMLWGSMFLCMS
Ga0115371_1077291623300008470SedimentMNTIKLVINKSGIFKKIDQKMEALCYFMLWGLMFLCLAQVAYI*
Ga0115371_1125497723300008470SedimentMNTIKIVIDKSGIFKKIDRKAEAFCYAMLWGSMFICIAQIAYM*
Ga0115371_1136382623300008470SedimentMNTIKLVIDKTGIFKKVDQKLEALCYAMLWGLMFICMAQIFYM*
Ga0102854_101103273300009058EstuarineNTIRLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM*
Ga0102830_126190413300009059EstuarineTHTYGEHMNTIRLVVDKSGILKKIDHKVEILCYAMLWGAWFLCLAQL*
Ga0102814_1025608643300009079EstuarineVTLVYKFIDKSGVFKKTGDKLEALCYALLWGSWFLCLSVLFG
Ga0114995_1000117913300009172MarineKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAYM*
Ga0114998_1001091053300009422MarineMNTIKLVVDKSGIFKKGTQKIEFLCYAMFWGAWILCLAQL*
Ga0115547_122798233300009426Pelagic MarineMNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM*
Ga0114915_101136973300009428Deep OceanMNTIKLVIDKSGIFKKVDQKLEALCYFMLWGSMFICMAQIAYI*
Ga0114915_118234613300009428Deep OceanTQITYRRIMNTIKLVIDKSGIFKKIDRKAEAFCYAMLWGSMFICIAQIAYM*
Ga0115545_109286033300009433Pelagic MarineMNTIKLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLAYM*
Ga0115556_124413223300009437Pelagic MarineMNTIKLVIDKSGIFKKFEQKLEALCYTMLWGSMFLCMSQLAYM*
Ga0115557_108422513300009443Pelagic MarineMNTIKLVIDKSGIFKKFEQKLEALCYTMLWGSMFL
Ga0115571_1001622133300009495Pelagic MarineMNTVRLVVDKSGILKKIDHKVEILCYAMLWGAWFLCLAQL*
Ga0115570_1005779753300009496Pelagic MarineIMNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM*
Ga0115003_1005953353300009512MarineMIRTIIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIA
Ga0115000_1000350113300009705MarineMIRTIIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAYM*
Ga0133547_1123860023300010883MarineMIRTIIDKSGIFKKVDRKAETFCYALLWGSMFVCMAQIAYM*
Ga0164321_1022288133300014903Marine SedimentMNTIKLVIDKSGIFKKVDQKIEALCYAMLWGSMFVCMSQLAYM*
Ga0180120_1031648643300017697Freshwater To Marine Saline GradientKLVINKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Ga0181377_104910333300017706MarineMGSDVEMRTIALTIIDKSGIFKKVHQKAEVLCYAMLWGSWFLCLTALF
Ga0181387_101663223300017709SeawaterMTAVALKIIDKSGIFKKVHQKAEVLCYTMLWGSWFLC
Ga0181412_107577713300017714SeawaterALKIIDKSGIFKKVHQKAEVLCYTMLWGSWFLCLTQLF
Ga0181390_103606823300017719SeawaterMGSDVEMRAVALTIIDKSGIFKKVHQKAEVLCYTMLWGSWFLCLTQLF
Ga0181390_109131943300017719SeawaterVTLVYKFIDKSGIFKKTGDKLEALCYALLWGSWFLCLS
Ga0181420_116869113300017757SeawaterIKRYTRTTRTHRSIMNTIRLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM
Ga0181430_119638333300017772SeawaterVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM
Ga0181380_124630213300017782SeawaterMNTIRLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCM
Ga0181424_1039790113300017786SeawaterEMTAVALKIIDKSGIFKKVHQKAEVLCYTMLWGSWFLCLTQLF
Ga0181552_10002175113300017824Salt MarshMNTIKLVIDKSGIFKKVDQKVEVLCYAMLWGSMFVCMSQLAYM
Ga0181607_1003776033300017950Salt MarshMRTVALKIIDKSGIFKKVEAKIEALCYALLWGSMFLCLAQMF
Ga0181600_1035788213300018036Salt MarshRMRTVALKIIDKSGIFKKVEAKIEALCYALLWGSMFLCLAQMF
Ga0206125_1000605743300020165SeawaterMNTIKLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Ga0206129_1000991733300020182SeawaterMNTVRLVVDKSGILKKIDHKVEILCYAMLWGAWFLCLAQL
Ga0206131_10005188213300020185SeawaterMNTIKVVIDKTGIFKKVDQKLEALCYAMLWGSMFLCMSQLAYM
Ga0181597_1003455793300020194Salt MarshRTVALRIIDKSGIFKKVEAKIEALCYALLWGSMFLCLAQMF
Ga0211504_100276233300020347MarineMNTIKLVIDKSGIFKKIDQKVEALCYALLWSSMFVCMAQIAYI
Ga0211504_100830113300020347MarineMNTIKLVVDKSGILKKVDHKVEILCYAMLWGAWFLCLAQL
Ga0211504_107677513300020347MarineMGSDVEMRTIALTIIDKSGIFKKVNQKAEVLCYAMLWGSWFLCLTALF
Ga0211554_1000435553300020431MarineMNTIKLVINKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Ga0211576_10001400133300020438MarineMNTIKLVIDKSGIFKKVDQKMEALCYAMLWGSMFLCMSQLAYM
Ga0211576_1000545923300020438MarineMNTIRLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM
Ga0211576_1002475613300020438MarineMKTIALTIIDKSGILKKVDQKVEALCYAMLWGSWFLCLTQLF
Ga0211576_1010951833300020438MarineMGSDVEMRAVALTIIDKSGIFKKVDQKLEALCYAMLWGSWFLCLTQLF
Ga0211577_1036133633300020469MarineRIEKEMKTIALTIIDKSGILKKVDQKVEALCYAMLWGSWFLCLTQLF
Ga0206677_10003358183300021085SeawaterMTAVALKIIDKSGIFKKVHQKAEVLCYTMLWGSWFLCLTQLF
Ga0213860_1006569643300021368SeawaterIKLVIDKSGIFKKVDQKIETLCYAMLWGSMFVCMSQLAYM
Ga0213863_1023112823300021371SeawaterMNTIKLVIDKSGIFKKVDQKIETLCYAMLWGSMFVCM
Ga0213869_1004068623300021375SeawaterMGSDVEMRTIALTIIDKSGIFKKVHQKAEVLCYAMLWGSWFLCLTTLF
Ga0255779_129737623300022922Salt MarshMNTIKLVIDKSGIFKKVDQKVEVLCYAMLWGSMFVCMSQLAY
Ga0255753_130751213300022926Salt MarshTSNKRFTTLQTYRSIMNTIKLVIDKSGIFKKVDQKVEVLCYAMLWGSMFVCMSQLAYM
(restricted) Ga0233433_1035068313300022931SeawaterVTLVYKFIDKSGIFKKVHEKAEVLCYTMLWGSWFLCLS
Ga0244775_1007457343300024346EstuarineMNTIKLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM
Ga0244776_1002099163300024348EstuarineMNTIKLVIDKSGIFKKVDRKMEALCYAMLWGSMFLCMSQLAYM
Ga0209986_1005057363300024433Deep SubsurfaceRTHRSIMNTIKLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM
Ga0209535_102047773300025120MarineMNTIKLVIDKSGIFKKVDQKLEVLCYAMLWGSMFLCMSQIFTL
Ga0209634_101060123300025138MarineMNRMSDVEMKAIAITIIDKSGIFKKVHQKAEVLCYAMLWGSWFLCLTQLL
Ga0209634_101617823300025138MarineMKAVALTIIDKSGITKKVTEKVETLCYAMLWGSWFICLAQIF
Ga0209634_107248713300025138MarineKLVIDKSGIFKKVDQKLEVLCYAMLWGSMFLCMSQIFTL
Ga0209645_1000004913300025151MarineMNTIKLVIDKSGIFKKVDQKIETLCYAMLWGSMFVCMSQLAYM
Ga0209337_130197013300025168MarineMNRMSDVEMKAIAITIIDKSGIFKKVHQKAEVLCYAMLWGSWFLCLTQLF
Ga0208814_1002633143300025276Deep OceanMNTIKLVINKSGIFKKIDQKMEALCYFMLWGLMFLCLAQVAYI
Ga0208814_100345333300025276Deep OceanMNTIKLVIDKSGIFKKVDQKLEALCYFMLWGSMFICMAQIAYI
Ga0208814_101615023300025276Deep OceanMNTIKIVIDKSGIFKKIDRKAEAFCYAMLWGSMFICIAQIAYM
Ga0209716_111344113300025626Pelagic MarineQTYRGIMNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLAYM
Ga0208134_109376913300025652AqueousRYITLQTDRRIMNTIKLVINKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Ga0208428_105598723300025653AqueousMNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQL
Ga0209602_101203153300025704Pelagic MarineMNTIRLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLAYM
Ga0209714_114462423300025822Pelagic MarineMNTIKLVIDKSGIFKKFEQKLEALCYTMLWGSMFLCMSQLAYM
Ga0208645_109311523300025853AqueousMNTIRLVIDKSGIFKKVDQKLEALCYTMLWGSMFLCMSQLAYM
Ga0208645_128453833300025853AqueousLVIDKSGIFKKVDQKLEALCYTMLWGSMFLCMSQLAYM
Ga0209309_1007805613300025881Pelagic MarineSIMNTIKLVIDKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Ga0209502_10007446123300027780MarineMNTIKLVIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAYM
Ga0209502_1001501933300027780MarineMNTIKLVVDKSGIFKKGTQKIEFLCYAMFWGAWILCLAQL
Ga0209711_1000326513300027788MarineMIRTIIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAY
Ga0209830_10000979223300027791MarineMIRTIIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAYM
Ga0209090_1002093793300027813MarineMNTIKIVIDKSGIFKKVDRKMEAFCYALLWGSMFVCMAQIAYM
Ga0209272_1024575643300027967Marine SedimentNKSGIFKKVDQKLEALCYAMLWGSMFLCMSQLFYM
Ga0228674_100958113300028008SeawaterHRSIMNTIRLVIDKTGIFKKFEQKLEALCYAMLWGSMFLCMSQLFYM
Ga0257110_131926213300028197MarineMSDVEMKAIAITIIDKSGIFKKVHQKAEVLCYAMLWGSWFLCL
Ga0247572_115912813300028290SeawaterRITTLQRDRNIMNTIKLVIDKSGIFKKIDQKVEALCYALLWSSMFVCMAQIAYI
Ga0307488_1006449083300031519Sackhole BrineMTIIAKIVDKTGIFKKLDQKAETFCYALLWSSMFICLAQMF
Ga0302119_10004518123300031606MarineMDTIKLVIDKSGICKKVDQKVETLAYTLIWSSIIICMAQIAYI
Ga0302120_1005541443300031701MarineMDTIKLVIDKSGICKKVDQKVETLAYTLIWSSIII
Ga0315321_1002467113300032088SeawaterIIDKSGIFKKVDQKLEALCYAMLWGSWFLCLTQLF


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