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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F095435 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 105 |
| Average Sequence Length | 62 residues |
| Representative Sequence | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACLDLVEHLARQSENVTTAEVETTLGV |
| Number of Associated Samples | 95 |
| Number of Associated Scaffolds | 105 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 83.65 % |
| % of genes near scaffold ends (potentially truncated) | 99.05 % |
| % of genes from short scaffolds (< 2000 bps) | 93.33 % |
| Associated GOLD sequencing projects | 92 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.66 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (70.476 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (11.429 % of family members) |
| Environment Ontology (ENVO) | Unclassified (43.810 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (54.286 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 53.85% β-sheet: 2.20% Coil/Unstructured: 43.96% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.66 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 105 Family Scaffolds |
|---|---|---|
| PF00925 | GTP_cyclohydro2 | 55.24 |
| PF04134 | DCC1-like | 20.95 |
| PF00926 | DHBP_synthase | 16.19 |
| PF00677 | Lum_binding | 3.81 |
| PF00072 | Response_reg | 0.95 |
| PF01872 | RibD_C | 0.95 |
| COG ID | Name | Functional Category | % Frequency in 105 Family Scaffolds |
|---|---|---|---|
| COG0807 | GTP cyclohydrolase II | Coenzyme transport and metabolism [H] | 55.24 |
| COG3011 | Predicted thiol-disulfide oxidoreductase YuxK, DCC family | General function prediction only [R] | 20.95 |
| COG0108 | 3,4-dihydroxy-2-butanone 4-phosphate synthase | Coenzyme transport and metabolism [H] | 16.19 |
| COG0307 | Riboflavin synthase alpha chain | Coenzyme transport and metabolism [H] | 3.81 |
| COG0262 | Dihydrofolate reductase | Coenzyme transport and metabolism [H] | 0.95 |
| COG1985 | Pyrimidine reductase, riboflavin biosynthesis | Coenzyme transport and metabolism [H] | 0.95 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 70.48 % |
| All Organisms | root | All Organisms | 29.52 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 11.43% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 11.43% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 8.57% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 6.67% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 5.71% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 4.76% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 3.81% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 3.81% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 3.81% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 2.86% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 2.86% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 2.86% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 2.86% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 1.90% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 1.90% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.90% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.90% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 1.90% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 0.95% |
| Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 0.95% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.95% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.95% |
| Unplanted Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil | 0.95% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil | 0.95% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.95% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.95% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.95% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.95% |
| Host-Associated | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated | 0.95% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.95% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 0.95% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.95% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.95% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.95% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 0.95% |
| Visualization |
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2088090008 | Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3 | Environmental | Open in IMG/M |
| 3300000363 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300002568 | Grasslands soil microbial communities from Hopland, California, USA - 2 | Environmental | Open in IMG/M |
| 3300004281 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio | Environmental | Open in IMG/M |
| 3300004480 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4 | Environmental | Open in IMG/M |
| 3300004803 | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) | Host-Associated | Open in IMG/M |
| 3300005186 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 | Environmental | Open in IMG/M |
| 3300005295 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 | Environmental | Open in IMG/M |
| 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
| 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Environmental | Open in IMG/M |
| 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Environmental | Open in IMG/M |
| 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Environmental | Open in IMG/M |
| 3300005540 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 | Environmental | Open in IMG/M |
| 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Environmental | Open in IMG/M |
| 3300005569 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 | Environmental | Open in IMG/M |
| 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Host-Associated | Open in IMG/M |
| 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Host-Associated | Open in IMG/M |
| 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Host-Associated | Open in IMG/M |
| 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Host-Associated | Open in IMG/M |
| 3300006041 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 | Environmental | Open in IMG/M |
| 3300006579 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006797 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108 | Environmental | Open in IMG/M |
| 3300006844 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Host-Associated | Open in IMG/M |
| 3300006852 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Host-Associated | Open in IMG/M |
| 3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
| 3300009038 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG | Environmental | Open in IMG/M |
| 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009100 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2 | Host-Associated | Open in IMG/M |
| 3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300010043 | Tropical forest soil microbial communities from Panama - MetaG Plot_26 | Environmental | Open in IMG/M |
| 3300010047 | Tropical forest soil microbial communities from Panama - MetaG Plot_30 | Environmental | Open in IMG/M |
| 3300010159 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 | Environmental | Open in IMG/M |
| 3300010360 | Tropical forest soil microbial communities from Panama - MetaG Plot_6 | Environmental | Open in IMG/M |
| 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
| 3300011269 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG | Environmental | Open in IMG/M |
| 3300011423 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2 | Environmental | Open in IMG/M |
| 3300012200 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG | Environmental | Open in IMG/M |
| 3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
| 3300012208 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012350 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300012356 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG | Environmental | Open in IMG/M |
| 3300012389 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_2 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
| 3300012517 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610 | Environmental | Open in IMG/M |
| 3300012582 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG | Environmental | Open in IMG/M |
| 3300012927 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300012989 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG | Environmental | Open in IMG/M |
| 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Host-Associated | Open in IMG/M |
| 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Host-Associated | Open in IMG/M |
| 3300015245 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300017656 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015 | Environmental | Open in IMG/M |
| 3300018028 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex | Environmental | Open in IMG/M |
| 3300020004 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2 | Environmental | Open in IMG/M |
| 3300021078 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo | Environmental | Open in IMG/M |
| 3300025905 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026309 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes) | Environmental | Open in IMG/M |
| 3300026532 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes) | Environmental | Open in IMG/M |
| 3300026550 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes) | Environmental | Open in IMG/M |
| 3300026552 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes) | Environmental | Open in IMG/M |
| 3300028589 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1 | Environmental | Open in IMG/M |
| 3300028814 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183 | Environmental | Open in IMG/M |
| 3300031716 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031820 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 | Environmental | Open in IMG/M |
| 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Host-Associated | Open in IMG/M |
| 3300031943 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2 | Environmental | Open in IMG/M |
| 3300031965 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185 | Environmental | Open in IMG/M |
| 3300032122 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| 3300033475 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC | Environmental | Open in IMG/M |
| 3300034661 | Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| P3_DRAFT_01197140 | 2088090008 | Soil | MTVKGQLHACRDSLMAGMRAASRGSSPNPRAEPLLRACLDLVEHLVRQSLDVTTAEVETTLAVLERAFGELED |
| ICChiseqgaiiFebDRAFT_104295432 | 3300000363 | Soil | MSIKGQLNATRDFLMAGIRASARGSTPNEQAGKLVRACLDLV |
| JGI10216J12902_1123103841 | 3300000956 | Soil | MSIKGQLNASRDFLMAGMRAAARGSAPNQQAERLMRACLDLVEHLARQSENVTTSEVETTLGVMTRAAAELEQDEAASAVLA |
| C688J35102_1208499901 | 3300002568 | Soil | MTVKGQLHGCRDSLMAGMRAASRGASPNPKAEPLLRACLDLVEHLVRQSLDVTTAEVETTLAVLER |
| Ga0066397_101481121 | 3300004281 | Tropical Forest Soil | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLVRACLDL |
| Ga0062592_1011609222 | 3300004480 | Soil | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLVRACLDLVEHLARQSENVTTSEVETTLGVMTRAAAELEQDEAAS |
| Ga0058862_124081041 | 3300004803 | Host-Associated | VTVKSQLTACRDSLMAGMRAAARCAAPDECAGTLIRACLDLVEHLTAQSSEVTITEVNTTLNVLEQALSE |
| Ga0066676_101260603 | 3300005186 | Soil | MTVKGQLHACRDSLMAGMRASARGAAPNERAATLLRACLDLVEHLVRQSMDVKSGEVETTLGVLEQAYAELEAEVGA |
| Ga0065707_101483633 | 3300005295 | Switchgrass Rhizosphere | MSVKGQLNACRDSLMAGMRATSRAATPNPKAEALLRACMDLVEHLAGQSADVTTAEVETTLGVLEQA |
| Ga0070690_1007921202 | 3300005330 | Switchgrass Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLVRACLDLVEHLARQSENVTTSEVETTLGVMTRAAAELEQD |
| Ga0070670_1012894372 | 3300005331 | Switchgrass Rhizosphere | MTVKGQLHACRDSLMAGMRSASRGTPPNAKAEALIRACLDLVEHLVRQSLDVTTAEVETTLGVMEQAY |
| Ga0070689_1011806621 | 3300005340 | Switchgrass Rhizosphere | MTVKGQLHACRDSLMAGMRAASRGTPNPKAESLLRACLDLVEHLVRQSLDVTTAEVETTL |
| Ga0070671_1019752441 | 3300005355 | Switchgrass Rhizosphere | MSVKGQLTACRDFLMVGMRASARGAVPHEASAKNIRACLDLVEQLVRQSENVRAQEVETTLTVLTRAAAELDTDEASPPAVIS |
| Ga0070673_1003625901 | 3300005364 | Switchgrass Rhizosphere | MSIKSQLTASRDFLMAGMRAAARGSAPNQQAERLMRACLDLVEHLARQSENVTTA |
| Ga0070659_1006375602 | 3300005366 | Corn Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLVRACLDLVEHLARQSENVTTSEVE |
| Ga0070681_102892321 | 3300005458 | Corn Rhizosphere | VTVKSQLTACRDSLMAGMRAAARGAAPDERAGTLIRACLDLVEHLTAQSSEVTITEVNTTLNVLEQ |
| Ga0070679_1000885444 | 3300005530 | Corn Rhizosphere | VTVKGQLTACRDSLMAGMRAAARGATPDERAGRLLRACLDLVEHMASQSKDVSVAE |
| Ga0066697_106489122 | 3300005540 | Soil | MSVKSQLTACRDFLMVGMRAAARGAVKHDQSEKNIRACLDLVEQLVRQSENVKLPEVETTINVLNRAAA |
| Ga0070686_1003528832 | 3300005544 | Switchgrass Rhizosphere | MSIKSQLTASRDFLMAGMRAAARGSAPNQQAERLMRACLDLVEHLARQSENVT |
| Ga0066705_105121482 | 3300005569 | Soil | MSVKSQLTACRDFLMVGMRAAARGAVKHEQSEKNIRACLDLVEQLVRQSENVK |
| Ga0068854_1021214151 | 3300005578 | Corn Rhizosphere | MSVKGQLTACRDFLMVGMRASARGAVPHEASAKNIRACLDLVEQLVR |
| Ga0068861_1007967162 | 3300005719 | Switchgrass Rhizosphere | MSVKGQLNACRDSLMAGMRATSRGAAPSPKAEALLRACMDLVEHLAGQSLNVTTAEVETTLGVLEQAYGEM |
| Ga0068860_1003146043 | 3300005843 | Switchgrass Rhizosphere | MSVKGQLIACRDALLAGMRATSRVSPPNEKAEKLLRACLDLVEHLEGQSLVVTAAEVETTLG |
| Ga0068860_1009377591 | 3300005843 | Switchgrass Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACLDLVEHLARQSENVTTSEVETTLGVM |
| Ga0068862_1022391612 | 3300005844 | Switchgrass Rhizosphere | MSVKGQLHAWRDSLMAGMRAAARGASPNPKAETLLRACLDLVEHLTRQSMDVTTAEVETT |
| Ga0075023_1005528272 | 3300006041 | Watersheds | MTIKGQIHACRDSLMAGMRATGRSATPNERAEKLLRACLDLVEHLGRQSLDVKIAEVETTLAV |
| Ga0074054_113596091 | 3300006579 | Soil | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACL |
| Ga0066659_100299025 | 3300006797 | Soil | MSVKGQLTASRDFLMVGMRSAERSSTRNEAATKVVRACLDL |
| Ga0066659_112681571 | 3300006797 | Soil | MSVKSQLTACRDFLMVGMRAAARGAVKHEQSEKNIRACL |
| Ga0066659_116365152 | 3300006797 | Soil | VSVKGQLSATRDFLMAGMRAAGRVSAPNEQAMKLLRACLDLVEHMVPKSESVTAAEVETTLAVLHQAAG |
| Ga0075428_1013041562 | 3300006844 | Populus Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLVRACLDLVEHLARQSENVTTSEVETTLGVM |
| Ga0075433_103562962 | 3300006852 | Populus Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLVRACLDLVEHLARQSENVTTSEVETTLGVMTRA |
| Ga0075433_114897412 | 3300006852 | Populus Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACLDLVEHLARQSENVTTSEVETTLGVMTRAAAELEQDEAAS |
| Ga0075425_1016033862 | 3300006854 | Populus Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACLDLVEHLARQSENVTTSEVETTLGVMTRAAAELEQ |
| Ga0099829_116962781 | 3300009038 | Vadose Zone Soil | MSVKGQLTACRDFLMVGMRASARGSVPNETAAAVIRACLDLVEQLVRQSENV |
| Ga0105240_119512641 | 3300009093 | Corn Rhizosphere | MSVKGQLIACRDALMAGMRATSRVAVPNEKVEKLLRACLDLVEHLSGQSAAVTTAEVETTLSVLENAYAE |
| Ga0111539_124320391 | 3300009094 | Populus Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLVRACLDLVEHLARQSENVTTSEVETTLGVMTRAAA |
| Ga0105245_131444932 | 3300009098 | Miscanthus Rhizosphere | MTVKGQLHACRDSLMAGMRAASRGAAVSPKAEALLRACLDLVEHLVRQSLDVTTAEVETTLGVLEQAHGEMEAEVGAAHGATG |
| Ga0075418_105985082 | 3300009100 | Populus Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLVRACLDLVEHLARQSENVTTSEVETTLGVMTRAAAELEQDE |
| Ga0066709_1013472401 | 3300009137 | Grasslands Soil | MSIKGQLNSSRDFLMAGMRAAARGSTPNEQAGRLLRACLDLVEHLERQSENVTAAEVETTLGVMTRAAAELEQDEGASAVL |
| Ga0105242_102698933 | 3300009176 | Miscanthus Rhizosphere | MTVKGQLHACRDSLMAGMRAASRGATPNPRAEPLLRACLDLVEHLVRQSLDVTTAEVETTLAVLERAFSELEGEA |
| Ga0105242_114210821 | 3300009176 | Miscanthus Rhizosphere | MSVKGQLTASRDFLMVGMRAAGRGAVPNEAAAKVLRACLDLVEQLVNQSENVTAAEVETTLKVLTQASAEV |
| Ga0105242_115209111 | 3300009176 | Miscanthus Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACLDLVEHLARQSENVTTAEVETTLGV |
| Ga0105242_117972022 | 3300009176 | Miscanthus Rhizosphere | MSVKGQLIACRDALLAGMRATSRVSPPNEKAEKLLRACLDLVEHLEGQSLVVTAAEVETTLGVLEQAYGELEGEQGPAS |
| Ga0126380_107356202 | 3300010043 | Tropical Forest Soil | MSVKSQLTATRDFLMVGMRAAARGAVKHEQSEKNIRACLDLVEQL |
| Ga0126382_114968081 | 3300010047 | Tropical Forest Soil | MSTKGQLTACRDFLMVGMRASLRGATPHEASQKNIRACLDLVEQLVRQSESVRAPEVDTTLNVLTRAAAEL |
| Ga0099796_105655022 | 3300010159 | Vadose Zone Soil | MSVKGQLTACRDFLMVGMRASARGSTPHEQAATNIRACLDLVEQLVRQSESVKAPEVETTLNVLNRAAAELDADESAPPAVVSALR |
| Ga0126372_123098221 | 3300010360 | Tropical Forest Soil | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLVRACLDLVEHLARQS |
| Ga0105239_119935122 | 3300010375 | Corn Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLVRACL |
| Ga0134126_117947101 | 3300010396 | Terrestrial Soil | VTVKGQLTACRDSLMAGMRAAARGATPDERAGRLLRACLDLVEHMASQSKDVSVAEVNTTLNVLEQALVEDVQRGVDL |
| Ga0134123_134907441 | 3300010403 | Terrestrial Soil | MTVKGQLHACRDSLMAGMRAASRGTAPNPKAESLIRACLDLVEHLVRQSLDVTTAEVETTLGVMEQAYG |
| Ga0137392_105831881 | 3300011269 | Vadose Zone Soil | MTVKGQLHACRDFLMVGMRAVERSSTPNPEAAKVMRACMDLVEHLVRQSENVTAGEVETTLSVLEKA |
| Ga0137436_10647072 | 3300011423 | Soil | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACLDLVEHLARQSENVTTAEVETTLGVMTRAA |
| Ga0137382_103156471 | 3300012200 | Vadose Zone Soil | MSVKGQLIACRDALMAGMRATSRVAVPNEKIEKLLRACLDLVEHLSGQSAAVTTAEVETTLAVLENAYAELDGEQGPWTV |
| Ga0137363_108935771 | 3300012202 | Vadose Zone Soil | MSTKGQLTACRDFLMVGMRASARGAVPHEASAKNIRACLDLVEQLVRQSENVKAPEVETTLNVLTRAAAELDADEASPPAVV |
| Ga0137376_110612722 | 3300012208 | Vadose Zone Soil | MSVKGQLIACRDALMAGMRATSRVAVPNEKIEKLLRACLDLVEHLSGQSAAVTTAEVE |
| Ga0137376_114168982 | 3300012208 | Vadose Zone Soil | MSTKGQLTACRDFLMVGMRASARGAVPHEASAKNIRACLDLVEQLVRQSENVKAPEVETTLNVLTR |
| Ga0150985_1067194972 | 3300012212 | Avena Fatua Rhizosphere | MSVKGQLTACRDFLMVGMRAAARGAVTHEQSEKNIRACLDLVEQLVRVSENVKAAEVETTLNVLNRAAAELAADESSPPSVVS |
| Ga0137372_101286073 | 3300012350 | Vadose Zone Soil | MSIKGQLNSSRDFLMAGMRAAARGSTPNEQAGRLLRACLDLVEHLERQSENVTAAEVE |
| Ga0137371_103895512 | 3300012356 | Vadose Zone Soil | MSIKGQLNSSRDFLMAGMRAAARGSTPNEQAGRLLRACLDLV |
| Ga0134040_10094521 | 3300012389 | Grasslands Soil | MSVKGQLTASRDFLMVGMRSAERSSTRNEAATKVVRACLDLVETLVRQSENVTASQVETTLAVLEKAIAEV |
| Ga0150984_1048610421 | 3300012469 | Avena Fatua Rhizosphere | MSVKSTLNASRDFLMAGMRASARVSTQNPQAEKVLR |
| Ga0157354_10158691 | 3300012517 | Unplanted Soil | MSIKSQLTASRDFLMAGMRASARVQTQNPQAEKVLRAC |
| Ga0137358_109310041 | 3300012582 | Vadose Zone Soil | MSTKGQLTACRDFLMVGMRASARGAVPHEASAKNIRACLDLVEQLVRQSENVKAPEVETTLNVLTRAAAELDADEASPPAVVSA |
| Ga0137416_122386962 | 3300012927 | Vadose Zone Soil | MSIKGQLNASRDFLMVGMRAAARGATPNEQAGKLLRACLDLVEHLERQSENVTAAEVET |
| Ga0164299_106681832 | 3300012958 | Soil | MSVKGQLTACRDFLMVGMRAAARGAVRHEQSETNIRACLDLVEQLVRQSENVKAA |
| Ga0164302_110183392 | 3300012961 | Soil | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACLDLVEHLARQSENVTTSEVETTLGVMTRAAAELE |
| Ga0164305_115742251 | 3300012989 | Soil | MSVKGQLTACRDFLMVGMRASARGAVPHEASAKNIRACLDLVEQLVRQ |
| Ga0157374_118289461 | 3300013296 | Miscanthus Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACLD |
| Ga0157377_116896581 | 3300014745 | Miscanthus Rhizosphere | MSNKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACLDLVEHLARQ |
| Ga0137409_108410951 | 3300015245 | Vadose Zone Soil | MSIKGQLNASRDFLMVGMRAAARGATPNEQAGKLLRACLDLVEHLERQSENVTAAEVETT |
| Ga0132255_1006626021 | 3300015374 | Arabidopsis Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLVRACLDLVEHLARQSENVTASEVETTLGVMTRAAA |
| Ga0134112_104085871 | 3300017656 | Grasslands Soil | MSVKGQLTASRDFLMVGMRAAERSSTRNEAATKVVRACLDLV |
| Ga0184608_104151381 | 3300018028 | Groundwater Sediment | MSVKGQLNACRDSLMAGMRATSRAATPNPKAEALLRACMDLVEHLAGQSLEVKTAEVETTLGVLDQAYAEMD |
| Ga0193755_11982602 | 3300020004 | Soil | MSIKGQLNSSRDFLMAGMRAAARGSTPNEQAGRLLRACLDL |
| Ga0210381_103628651 | 3300021078 | Groundwater Sediment | MSVKGQLIACRDALMAGMRATSRVAVPNEKVEKLLRACLDLVEHLSSQTAAVTTAEVETTLAVLENAYGELDSE |
| Ga0207685_102411161 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACLDLVEHLARQS |
| Ga0207645_105958301 | 3300025907 | Miscanthus Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSAPNQQAERLMRACLDLVEHLARQSENVTTSEVET |
| Ga0207707_113635962 | 3300025912 | Corn Rhizosphere | VTVKSQLTACRDSLMAGMRAAARGAAPDERAGTLIRACLDLVEHL |
| Ga0207660_101588523 | 3300025917 | Corn Rhizosphere | VTVKSQLTACRDSLMAGMRAAARGAAPDERAGTLIRACLDLVEHLTAQSSEVTITEVNTTLNVLEQALSEMERDAEPN |
| Ga0207646_119360351 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MSTKGQLAACRDFLMVGMRASARGAVPHEASAKNIRACLDLVEQLVRQSENVKAPEVETT |
| Ga0207659_115229431 | 3300025926 | Miscanthus Rhizosphere | MTVKGQLHACRDSLMAGMRSASRGTPPNAKAEALIRACLDLVEHLVRQSLDVTTAEVETTLGVMEQAYG |
| Ga0207686_112189032 | 3300025934 | Miscanthus Rhizosphere | MSVKGQLTASRDFLMVGMRAAGRGAVPNESAAKVLR |
| Ga0207709_102925753 | 3300025935 | Miscanthus Rhizosphere | MSVKGQLNACRDSLMAGMRATSRGAAPSPKAEALLRACMDLVEHLAGQSLNVTTAEVETTLGVLEQAYGEMETEVGATHAAT |
| Ga0207708_116714332 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | MSVKGQLNACRDSLMAGMRATSRAATPNPKAEALLRACMDLVEHLVRQSLDVTAAEVETTLNVVENAYAEMEAEV |
| Ga0207675_1003160132 | 3300026118 | Switchgrass Rhizosphere | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLVRACLDLVEHLARQSENVTTAEVETTLGVMTRAAAELE |
| Ga0209055_11191422 | 3300026309 | Soil | MSVKGQLTASRDFLMVGMRSAERSSTRNEAATKVVRACLDLVETLVRQSENVTASQVE |
| Ga0209160_10336611 | 3300026532 | Soil | MSVKGQLTASRDFLMVGMRSAERSSTRNEAATKVVRACLDLVETLVRQSENVTASQVETTLAVLEKAIAEVDDETA |
| Ga0209474_101272643 | 3300026550 | Soil | MSVKSQLTACRDFLMVGMRAAARGAVKHEQSEKNIRACLDLVEQLVRQSENVKL |
| Ga0209577_100158101 | 3300026552 | Soil | MSVKGQLTASRDFLMVGMRSAERSSTRNEAATKVVRACLDLVETLVRQSENVTASQVETTLAVLEKAIAEVDDETAGT |
| Ga0247818_110530232 | 3300028589 | Soil | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACLG |
| Ga0307302_105144822 | 3300028814 | Soil | MSVKGQLIACRDALMAGMRATSRVAVPNEKVEKLLRACLDLVEHLSSQSAAVTTAEVETT |
| Ga0310813_108126701 | 3300031716 | Soil | MSVKGQLTACRDFLMVGMRASARGAVPHEASAKNIRACLDLVEQLVRQSENVRAHE |
| Ga0310813_121277631 | 3300031716 | Soil | MSIKGQLNASRDFLMAGMRAAARGSAPNQQAERLMRACLDLVEHLARQSENVT |
| Ga0307469_119270942 | 3300031720 | Hardwood Forest Soil | MTVKGQIHACRDSLMAGMRAAGRSSTPNERAEKLIRACLDLVEHLGRQSLDVKIGEVETTLGVLEQAYAELEAESGPTNAVSVS |
| Ga0307468_1006192381 | 3300031740 | Hardwood Forest Soil | MSTKGQLTACRDFLMVGMRASARGAVPHDASAKNVRACLDLVEQLVRQSENVRVPEVDTTLTVLTRAAAELDTD |
| Ga0307468_1021204371 | 3300031740 | Hardwood Forest Soil | MSIKGQLNASRDFLMVGMRAAARGATPNEQAGKLLRACLDLVEHLERQSEN |
| Ga0307473_105147621 | 3300031820 | Hardwood Forest Soil | MSTKGQLTACRDFLMVGMRASARGAAPHEASAKNVRACLDLVEQLVRQ |
| Ga0307412_113511041 | 3300031911 | Rhizosphere | MSVKGQLHACRDSLMAGMRAAARGAAPNPKAETLLRACLDLVEHLTRQSMDVTSSEVETTLGVLEQAYAEMEADAGA |
| Ga0310885_103208242 | 3300031943 | Soil | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACLDLVEHLARQSENVTTSE |
| Ga0326597_112854962 | 3300031965 | Soil | MTVKSQLTACRDSLMAGMRAATRGAAPNDRAEAILRACLDLVEHMARQAKEVSLGDVDTTLRVLDQAV |
| Ga0310895_103273741 | 3300032122 | Soil | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMRACLDLVEHLARQSENVTTSEVETTLG |
| Ga0335077_119654861 | 3300033158 | Soil | MSIKSQLTASRDFLMAGMRASARVSTQNPQAEKVLRACLDLVETLVR |
| Ga0310811_105329521 | 3300033475 | Soil | MSIKGQLNASRDFLMAGMRAAARGSAPNQQAERLMRACLDLVEHLARQ |
| Ga0314782_217038_3_110 | 3300034661 | Soil | MSIKGQLNASRDFLMAGMRAAARGSTPNQQAERLMR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |