NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095432

Metagenome / Metatranscriptome Family F095432

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095432
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 76 residues
Representative Sequence VVVALAALVPPCPSVPPGAGNKPKKATKPRNGKEKVEEGYIGRTDRHVHAAAVRRHDDGDLAAIPGTEP
Number of Associated Samples 97
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(20.000 % of family members)
Environment Ontology (ENVO) Unclassified
(37.143 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(44.762 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 6.19%    β-sheet: 0.00%    Coil/Unstructured: 93.81%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF00563EAL 37.14
PF02776TPP_enzyme_N 26.67
PF00990GGDEF 3.81
PF00487FA_desaturase 0.95
PF02321OEP 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG2200EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)Signal transduction mechanisms [T] 37.14
COG3434c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domainsSignal transduction mechanisms [T] 37.14
COG4943Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domainsSignal transduction mechanisms [T] 37.14
COG5001Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domainSignal transduction mechanisms [T] 37.14
COG1538Outer membrane protein TolCCell wall/membrane/envelope biogenesis [M] 1.90
COG1398Fatty-acid desaturaseLipid transport and metabolism [I] 0.95
COG3239Fatty acid desaturaseLipid transport and metabolism [I] 0.95


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil20.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere5.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.81%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost3.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.81%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil3.81%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere3.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.81%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.86%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.86%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.90%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.90%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.90%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.95%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.95%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.95%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.95%
Permafrost And Active Layer SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost And Active Layer Soil0.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.95%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.95%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.95%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.95%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.95%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.95%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.95%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.95%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.95%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.95%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001305Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300001536Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001565Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-5cm-18A)- 1 week illumina newEnvironmentalOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300002028Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_A17EnvironmentalOpen in IMG/M
3300003572Grassland soil microbial communities from Hopland, California, USA - Sample H3_Bulk_40 (Metagenome Metatranscriptome, Counting Only)Host-AssociatedOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005146Soil and rhizosphere microbial communities from Laval, Canada - mgHABEnvironmentalOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006580Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006604Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006606Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2)Host-AssociatedOpen in IMG/M
3300006953Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300011997Permafrost microbial communities from Nunavut, Canada - A15_80cm_18MEnvironmentalOpen in IMG/M
3300012004Permafrost microbial communities from Nunavut, Canada - A30_5cm_6MEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012893Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1EnvironmentalOpen in IMG/M
3300012898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1EnvironmentalOpen in IMG/M
3300012904Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1EnvironmentalOpen in IMG/M
3300012905Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2EnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300018072Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2EnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300019263Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300022694Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coexEnvironmentalOpen in IMG/M
3300022737Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5EnvironmentalOpen in IMG/M
3300022915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4EnvironmentalOpen in IMG/M
3300023102Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5EnvironmentalOpen in IMG/M
3300023266Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4EnvironmentalOpen in IMG/M
3300024055Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027717Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028811Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300032173Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_topEnvironmentalOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300034115Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
C688J14111_1010640723300001305SoilVVVALAALVPPCPSVPPGAGNKPKKATKPRNRKEKVEEGYVGRIDRDMHASAVRRDDDGDLATIPCEPGQCGLLRARRQRYCDVAAV*
A1565W1_1013623023300001536PermafrostVALVPPCPSVPPGAGNQLKKAIKPRKRAKQVEEGYEGRGRLDRDMHAAAIRRHDDGDLAAISGSEPAQSGLQ*
A35518A_137044823300001565PermafrostVLLVPPCPSVPPGAGNQPKKAIKPRKRAKQVEEGYDGGGRVDRDMHAAAIRRHDDGDLAAIS*
C688J18823_1017474323300001686SoilVVVALAALVPPCPSVPPGAGNKPKKATKHRKGKKKVEERYVGGIEGNVHAAAIRRDDDGDLAAIP*
A17_129781923300002028Permafrost And Active Layer SoilKKAIKPRKRAKQVEEGYNGGGRIDRDMHAAAIRRHDDGDLAAIS*
Ga0007424J51698_102007213300003572Avena Fatua RhizosphereVVVALAALVPPCPSVPPGAGNKPKKATKPRNRKEKVEEGYVGRIDRDMHASAVRRDDDGDLATIPCEPGQCGLLRARRQRI
Ga0063454_10041279913300004081SoilCPSVPPGAGNKPKKATKPRNGKKKVEEGYVRRIDRDMHASAVRCDDDGDFAAIP*
Ga0063454_10080618123300004081SoilPPCPSVPPGAGNKPKKATKHRKGKKKVEERYVGGIEGNVHAAAIRRDDDGDLAAIP*
Ga0063356_10008936713300004463Arabidopsis Thaliana RhizosphereSVPPGAGNKPKKATKPRKRAKKVEKGYVGGVRIDRHVDAAAISRDHDGDGAALA*
Ga0062592_10113493713300004480SoilVVVALAALVPPCPSVPPGAGNQPKKAAKHRKGEEKVEERYIGRIDRKMHTAAIRRHDDGDLAAI
Ga0062592_10118570813300004480SoilPPGAGNKPKKATKPRNGKENVEEGYVGRIDRDMHASAVRGDDDGDLAAIPGEPGQCCLLRARRQGYCDVAAV*
Ga0062591_10082197623300004643SoilVVVALVALAPPCPSVPPGAGNQPKKAAKPGKGEEKVEEGYISRLDRDVHAAAIRRDDDGNPATIGTEPGQ*
Ga0062594_10069319113300005093SoilKPKKATKPRKRAKKVEKGYVGGVRIDRQVDAAAVRRDHHGDGAALA*
Ga0066817_102856513300005146SoilMVMWSGPPCRSSWETKDPRRPGEGPEVDRWCSSLAALAPPCPSVPPGAGNKPKKATKPRNRAKKFEERYVRQTGRFDRHVDAPAVRRGDDGNLATDSGVEPAQSGLQVIRSQRDCDVPAV
Ga0065715_1115622513300005293Miscanthus RhizosphereSVPPGAGNQPKKAAKPGKGEEKVEEGYISRLDRDVHAAAIRRDDDGNPATIGTEPGQ*
Ga0070682_10124576323300005337Corn RhizosphereMVALAALVPPCPSVPPGAGNKPKKAIKPRKRAKNVEEGYVCGIDRQMHAAAIRRHDDGDLASILGTEPAQWGLHVEPQRSCDVAAV*
Ga0070691_1046991113300005341Corn, Switchgrass And Miscanthus RhizosphereMVALAALVPPCPSVPPGAGNKPKKATKPRNGEEDFEQGYVGQTRRVDRDVHAAAVRRHDDGDLAAISGFEPAQSGLHVLRPQGSCDVSAV*
Ga0070687_10154850813300005343Switchgrass RhizosphereVVSSLAALVPPCPSVPPGAGNKPKKATKPRNGKEKVEEGYVGRTDRHVHAAAVRRHDDGDLAAIPGTEPGQCGLL
Ga0070668_10223368123300005347Switchgrass RhizospherePGEGPEGRSVVVALVALVPPCPSVPPGAGNQPKKAAKHRKGEEKVEEGYISRIDREMHAAAIRRHDDGDLASISGTEPAQWGLHVEPQRSCDVAAV*
Ga0070674_10095116323300005356Miscanthus RhizosphereVVVALVALAPPCPSVPPGAGNQPKKAAKPGKGEEKVEEGYISRLDRDVHAAAIRRDDDGNPAAIGTEPGQ*
Ga0070674_10145016113300005356Miscanthus RhizospherePSVPPGAGNKPKKATKPRNREEDFEKGYVGQTGRLDRDVHAPAIRRDDDGDLAAISGFEPAQSGLHA*
Ga0070701_1109725023300005438Corn, Switchgrass And Miscanthus RhizosphereVVVALVALAPPCPSVPPGAGNQPKKAAKPGKGEEKVEEGYISRLDRDVHAAAIRRHDDGDLAAISGFEPAQS
Ga0070700_10199079923300005441Corn, Switchgrass And Miscanthus RhizosphereCPSVPPGAGNKPKKATKPRKRAKKVEKGYVGGVRIDRQVDAAAVRRDHHGDGAALA*
Ga0070686_10092807623300005544Switchgrass RhizosphereVVSSLAALAPPCSSVPPGAGNKPKKATKPRNREEKVEEGYVGPGRVVRDVNAPTVRRGDDGDLAASPGLEPAQ
Ga0070665_10240010723300005548Switchgrass RhizosphereALAALVPPCPSVPPGAGNKPKKAIKPRKRAKNVEEGYVCGIDRQMHAAAIRRHDDGDLASISGTEPAQWGLHVEPQRSCDVAAV*
Ga0070664_10142669513300005564Corn RhizosphereVVSSLAALVPPCPSVPPGAGNKPKKATKPRNGEEDFEQGYVGQTGRVDRDVHAAAVRRHDDGDLAAISGFEPAQSGLHVL
Ga0068857_10203891723300005577Corn RhizosphereVVSSLAALVPPCPSVPPGAGNKPKKATKPRNGEEDFEQGYVGQTRRVDRDVHAAAVRRHDDGDLAAISGFEPAQSGLHV
Ga0066903_10136789713300005764Tropical Forest SoilPKKATKPRNGEEKVEKGYVGGSGIDREVDAATVSRDHHGDRAALP*
Ga0066652_10116185823300006046SoilVVVALAALVPPCPSVPPGAGNKPKKATKPRNRAKKFEERYVSQTGRFDRHVDAPAVRRDDDGD
Ga0075028_10010049013300006050WatershedsVDVALAALVPPCPSVPPGAGNQPKKAAKPRKREEKVEKRYIGRIDRDMHATAIRRHDDGDLAAIPGTEPGQ
Ga0074049_1001350513300006580SoilVVVALAALVPPCPSVPPGAGNKLKKATKPRNRKKKFEERYVRQTGRFDRHVDAPAVRRGDDGDLATDSGVEPAQSGLQVIRPQRDCDVPAV*
Ga0074060_1001048613300006604SoilLVPPGAGNQPKKAAKPRKRKEKVEEGYVRGRWIDRHVHTPAIRRHDDGD
Ga0074062_1278143723300006606SoilLVPPGAGNQPKKAAKPRKREEKVEKGYIGRIDRDVHAAAVRRHDDGDLAAIPGTEPG
Ga0068865_10171283313300006881Miscanthus RhizosphereVVSSLAALVPPCPSVPPGAGNKPKKATKPRKRAKKVEKGYVGGVRIDRQVDAAAVRRDHHGDGAALA*
Ga0097620_10266338023300006931Switchgrass RhizosphereVVSSLAALVPPCPSVPPGAGNKPKKATKPRNGEEDFEQGYVGQTRRVDRDVHAAAVRRHDDGDLAAISGFEPAQSGLHVLRPQGSCDVSAV*
Ga0074063_1007944713300006953SoilAPPCPSVPPGAGNKPKKATKPRNRAKKFEERYVRQTGRFDRHVDAPAVRRGDDGNLATDSGVEPAQSGLQVIRPQRDCDVPAV*
Ga0105240_1111682613300009093Corn RhizosphereVVVALAALVPPCPSVPPGAGNKPKKATKPRKRAKKVEKGYVGGVGIDRQVDAAAVRRDHHGDGAALA*
Ga0105245_1055916713300009098Miscanthus RhizospherePPCPSVPPGAGNKPKKATKPRNRAKKFEERYVRQTRGFDRHMDAPAIRRGDDGDLATDSGVEPAQSGLQVIRPQRDCDVPAV*
Ga0105247_1120669213300009101Switchgrass RhizosphereMVALAALVPPCPSVPPGAGNKPKKAIKPRKRAKNVEEGYVGGIDREMHAAAIRRHDDGDLASISGTEPAQWGLHVEPQRSCDVAAV*
Ga0105237_1204570723300009545Corn RhizosphereVVVALAALVPPCPSVPPGAGNKPKKATKPRNGKEKVEEGYIGRIDREMHAAAIRRHDDGDLAAIPGTEPGQCGLLRARRQRECDVAAV*
Ga0105238_1177496623300009551Corn RhizosphereMVALAALVPPCPSVPPGAGNKPKKATKPRNGEEDFEQRYVGEAGRIDRDVHAAAVRRDDDGDLAAISGFEPAQSGLHVLRPQRTCSVSAV*
Ga0105239_1226688413300010375Corn RhizosphereVALAALVPPCPSVPPGAGNKPKKATKPRNGEEDFEQGYVGQTRRVDRDVHAAAVRRHDDGDLAAISGFEPAQSGLHVLRPQGSCDVWAV*
Ga0134127_1360718013300010399Terrestrial SoilMVALAALVPPCPSVPPGAGNKPKKAIKPRKRAKNVEEGYVCGIDRQMHAAAIRRHDDGDLAAILGTEPAQW
Ga0120162_101054223300011997PermafrostVALVPPCPSVPPGAGNQLKKAIKPRKRSKQVEEGYEGRGRLDRDMHAAAIRRHDDGDLAAISGTEPAQSGLQ*
Ga0120134_101113523300012004PermafrostVLLVPPCPSVPPGAGNQPKKAIKPRKRAKQVEEGYDGGGRVDRDMDAAAIRRHDDGDLAAIS*
Ga0150984_11788832623300012469Avena Fatua RhizosphereVVPLAALVPPRPSVPPGAGNQPKKAAKPGKGEEKVKERYIGRIDRDMHAAAIRRHDDGDLAAIPRTEPGQSGLLR
Ga0157284_1026819913300012893SoilPGAGNKPKKATKPRNGEEDVEEGYVGRAGRFDGDVHAAAVRRHDDGDLAAISGFEPAQSGLHVLRPQGSCDVSAV*
Ga0157293_1013915913300012898SoilPPGAGNKPKKATKPRKRAKKVEKGYVGGVRIDRQVDAAAIRRDHHGDGAALA*
Ga0157282_1038057723300012904SoilVVVALGALVPPCPSVPPGAGNQPKKAAKPGKGEEKVEEGYISRLDRDVHAAAIRRHDDGDLAAISGFEPAQSGLHVLRPQGSCDVSAV*
Ga0157296_1004244123300012905SoilVVSSLAALVPPCPSVPPGAGNKPKKATKPRNGEEDVEEGYVGRAGRFDGDVQAAAVRRHDDGDLAAISGFEPAQSGLHA*
Ga0157306_1010890923300012912SoilVCFEKQKDPRRPGKGPEVDRWWSSLAALVPPCPSVPPGAGNKPKKATKPRNREEKVEKGYVGQTGRFDWDVHAAAVRRDDDGDLAAISGFEPAQSGLHVLRPQGSCDVSAV*
Ga0164298_1145941713300012955SoilMVALAALVPPCPSVPPGAGNKPKKAVKPRKRAEKVEERYVGGIDRQMHAPAIRRHDDGDLASILGTEPAQWGLHVKPQRSCDVAAV*
Ga0164299_1119283613300012958SoilMVALAALVPPCPSVPPGAGNKPKKAIKPRKRAKNVEEGYVCGIDRQMHAAAIRRHDDGDLASISGTEPAQWGLHVEPQRSCDVAAV*
Ga0164301_1080086113300012960SoilMVALAALVPPCPSVPPGAGNKPKKAIKPRKRAKNVEEGYVCGIDRQMHAAAIRRHDDGDLASILGTEPAQWGLHVKPQRSCDVAAV*
Ga0164308_1185998823300012985SoilMVALAALVPPCPSVPPGAGNKPKKAIKPRKRAKNVEEGYVGGIDRQMHAAAIRRHDDGDLASILGTEPAQWGLHVKPQRSCDVAAV*
Ga0164304_1098671813300012986SoilMVALAALVPPCPSVPPGAGNKPKKAIKPRKRAKNVEEGYVGGIDRQMHAAAIRRHDDGDLASILGTEPAQWGLHVEPQRSCDVAAV*
Ga0164304_1135103923300012986SoilVVSSLAALVPPCPSVPPGAGNQPKKAAKPRKRQKKVEEGYVRRRGIDRDVQAPAIG
Ga0164306_1025515923300012988SoilMVALAALVPPCPSVPPGAGNKPKKAIKPRKRAKNVEEGYVGGIDRQMDAAAIRRHDDGDLASILGTEP
Ga0157372_1242381923300013307Corn RhizosphereCPSVPPGAGNKPKKATKPRKRAKKVEKGYVGGVGIDRQVDAAAVRRDHHGDGAALA*
Ga0157380_1141111613300014326Switchgrass RhizosphereLAALVPPCPSVPPGAGNKPKKATEPRNGEEDFEQGYVGQTRRVDRDVHAAAVRRHDDGDLAAISGFEPAQSGLHVLRPQGSCDVSAV*
Ga0132256_10306937323300015372Arabidopsis RhizosphereVVVALAALVPPCPSVPPGAGNKPKKATKPRNGKEKVEEGYIGRTDRHVHAAAVRRHDDGDLAAIPGTEP
Ga0184620_1031300123300018051Groundwater SedimentPSVPPGAGNKPKKAIKPQKRAKQRDEGYVGEPVRLDRHMDAAAIRRDDDGDAAAVLSIEAAQVGLRRANAARGYRAVRAV
Ga0184635_1017345023300018072Groundwater SedimentVVVELAALVPPCPSVPPGAGNKLKKATKPRKRVEDVGQGYVGQTGRFDGDVHAAAVRRDDDGDLAAISGFEPAQSGLHVLWPQVSCSVSAV
Ga0190274_1320544123300018476SoilPSVPPGAGNQPKKAAKHRKGEEKVEEGYIGRIDRDMHAAAIRRHDDGDLAAIPGTEPGQCGLLRARRQR
Ga0184647_101852323300019263Groundwater SedimentVVVALVALVPPCPSVPPGAGNQPKKAAKPGKGEEKVEEGYISRLDRDVHAAAIRRDDDG
Ga0173479_1053221413300019362SoilVVSSLAALVPPCPSVPPGAGNKPKKATKPRNGEEDLEQGYVGQTGRLDRDVHAAAIRRHDDGDLAAISGFEPAQSGLHVLRPQ
Ga0173479_1081028913300019362SoilGPEGDRWMVALAALVPPCPSVPPGAGNKPKKATKPRNGEEDFEKGYVGQAGRVDRDVHAAAVRRDDDGNLAAISGFEPAQSVLHVLRPQRSCSVSAV
Ga0222623_1038643513300022694Groundwater SedimentHPGKGPEVDRWWSSLAALVPPCPSVPPGAGNKPKKATKPRKRVEDVDKGYVGQTGRLDRDVHAAAIRRDDDGDLAAISGSEPAQIGSPKQRPQGSRDVSAV
Ga0247747_104354913300022737SoilVVSSLAALVPPCPSVPPGAGNKPKKATKPRNGEEDLEQGYVGQTGRLDRNVHAAAIRRHDDGDLAAISGFEPAQSGLHVLRPQGSCDVSAV
Ga0247790_1014384223300022915SoilVVSSLAALVPPCPSVPPGAGNKPKKATKPRNGEEDFEKGYVGQAGRVDRDVHAAAVRRDDDGNLAAISGFEPAQSVLHVLRPQRSCSVSAV
Ga0247754_112516013300023102SoilVVSSLAALAPPCSSVPPGAGNKPKKATKPRNREEKVEEGYVGPGRVVRDVNAPTV
Ga0247789_110548813300023266SoilVVSSLAALVPPCPSVPPGAGNKPKKATKPRNGEEDLEQGYVGQTGRLDRDVHAAAIRRHDDGDLAAISGFEPAQSGLHVLRPQGSCDVSAV
Ga0247794_1002359813300024055SoilSLAVLVPPCPSVPPGAGNKPKKATKPRNGEEDFEQGYVGQTGRVDRDVHAAAVRRHDDGDLAAISGFEPAQSGLHVLRPQGSCDVSAV
Ga0207693_1077834213300025915Corn, Switchgrass And Miscanthus RhizospherePCPSVPPGAGNQPKKAAKPRKRKEKIEEGYVKGRWIDRDVHAPAIRRHDDGDLAVSSRIEPAQSGLHVWPQGSCDVSAV
Ga0207662_1045582723300025918Switchgrass RhizosphereVVVALVALAPPCPSVPPGAGNQPKKAAKPGKGEEKVEEGYISRLDRDVHAAAIRRDDDGNPATI
Ga0207681_1150721523300025923Switchgrass RhizosphereVVVALVALAPPCPSVPPGAGNQPKKAAKPGKGEEKVEEGYISRLDRDVHAAAIRRDDDGNPATIGTEPGQ
Ga0207650_1103191813300025925Switchgrass RhizosphereVVSSLAALVPPCPSVPPGAGNKPKKATKPRNGEEDFEKGYVGQAGRVDRDVHAAAVRRDDDGDLAAISGFEPAQSGLHVLRPQRTCSV
Ga0207687_1012541423300025927Miscanthus RhizosphereMVALAALVPPCPSVPPGAGNKPKKAIKPRKRAKNVEEGYVCGIDRQMHAAAIRRHDDGDLASISGTEPAQW
Ga0207687_1054981513300025927Miscanthus RhizosphereSSLAALAPPCPSVPPGAGNKPKKATKPRNRAKKFEERYVRQTRGFDRHMDAPAIRRGDDGDLATDSGVEPAQSGLQVIRPQRDCDVPAV
Ga0207686_1167767623300025934Miscanthus RhizosphereVVSSLAALAPPCSSVPPGAGNKPKKATKPRNREEKVEEGYVGPGRVVRDVNAPTVRRGDDGDLAASPGLEPAQSG
Ga0207679_1069384223300025945Corn RhizosphereVVSSLAALVPPCPSVPPGAGNKPKKATKPRNGEEDFEQGYVGQTGRFDRDVHAAAVRRHDDGDLAAI
Ga0207679_1106354413300025945Corn RhizosphereWMVALAALVPPCPSVPPGAGNKPKKAIKPRKRAKNIEEGYVCGIDRQMHAAAIRRHDDGDLAAISGFEPAQSGLHVLRPQGSCDVSAV
Ga0207651_1073820323300025960Switchgrass RhizosphereVVVALAALVPPCPSVPPGAGNKPKKATKPRNGEEDFEQGYVGQTGRFDRDVHAAAVRRDDDGDLAAISGFEPAQSGLHVLRPQGSCDVSAV
Ga0207712_1183337013300025961Switchgrass RhizosphereVVSSLAALVPPCPSVPPGAGNKPKKATKPRNGEEDFEQGYVGQTRRVDRDVHA
Ga0207668_1171080313300025972Switchgrass RhizosphereRRPGEGPEGRSVVVALVALVPPCPSVPPGAGNQPKKAAKHRKGEEKVEEGYISRLDRDVHAAAVRRDDDGNPATIGTEPGQ
Ga0207640_1133826423300025981Corn RhizosphereWRLAALVPPCPSVPPGAGNKPKKATKPRKRAKKVEKGYVGGVGIDRQVDAAAVRRDHHGDGAALA
Ga0207677_1054391023300026023Miscanthus RhizosphereVPPCPSVPPGAGNKPKKATKPRKRAKKVEKGYVGGVRIDRQVDAAAVRRDHHGDGAALA
Ga0207639_1131147023300026041Corn RhizosphereVVSSLAALVPPCPSVPPGAGNKPKKATKPRKRAKKVEKGYVGGVGIDRQVDAAAVRRDHHGDGAALA
Ga0207678_1032288423300026067Corn RhizosphereMVALAALVPPCPSVPPGAGNKPKKAIKPRKRAKNVEEGYVGGIDRQMHAAAIRRHDDGDLASISGTEPAQWGLHVEPQRSCDVAAV
Ga0207676_1108580713300026095Switchgrass RhizosphereVVALAALVPPCPSVPPGAGNKPKKAIKPRKRAKNVEEGYVCGIDRQMHAAAIRRHDDGDLASISGTEPAQWGLHVEPQRTCDVAAV
Ga0207675_10171031423300026118Switchgrass RhizosphereVVVALVALAPPCPSVPPGAGNQPKKAAKPGKGEEKVEEGYISRLDRDVHAAAIRRDDDGNPATIG
Ga0209998_1007733423300027717Arabidopsis Thaliana RhizosphereAGNKPKKATKPRKRAKKVEKGYVGGVRIDRHVDAAAISRDHDGDGAALA
Ga0307282_1034900013300028784SoilPCRPGKGPEVDRWWSSLAALVPPCPSVPPGAGNKPKKAIKPRNGEEDVEQGYVGQTGRLDRDVHAAAVRRDDDGDLAAISGFEPAQSGLHVFVPQGSCDVSAV
Ga0307292_1006625013300028811SoilKQKDPCRPGKGPEVDRWWSSLAALVPPCPSVPPGAGNKPKKATKPRNREENVEKGYVGQTGRLDGDVHAAAVRRDDDGDLAAISGFEPAQSGLHVFVPQGSCDVSAV
Ga0307292_1042938213300028811SoilPGEGPEVDRWCSSLAALAPPCPSVPPGAGNKPKKATKPRNRAKKFEQRYVRQTRGFDRHVDAPAIRRGDDGDLATDSGVEPAQSGLQVIRPQRDCDVPAV
Ga0307296_1034289423300028819SoilEGPEVDRWCSSLAALAPPCPSVPPGAGNKPKKATKPRNRAKKFEQRYVRQTRGFDRHVDAPAIRRGDDGDLATDSGVEPAQSGLQVIRPQRDCDVPAV
Ga0307498_1026816213300031170SoilVVVALAALVPPCPSVPPGAGNKPKKATKPRNGKEKVEEGYIGRTDRHVHASAVRRHDDGDLAAIPGTEPGQCGLL
Ga0318516_1082264313300031543SoilVALVPPCPSVPPGAGNEPKKATKPRKRAKKVEKGYVGGMRIDRQMHAAAVSRDHHGDGAVLP
Ga0310813_1171775013300031716SoilGPPCDPSRKQKDPRLPGKGPEVGRWWSSLAALVPPCPSVPPGAGNKPKKATKPRNGEEDFEKGYVGQAGRVDRDVHAAAVRRDDDGNLAAISGFEPAQSVLHVLRPQRSCSVSAV
Ga0318501_1012948423300031736SoilVALVPPCPSVPPGAGNEPKKATKPRKRAKKVEKGYVGGMRIDRQMHAAAVSRDHHGDGAALP
Ga0318543_1015592923300031777SoilVALVPPCPSVPPGAGNEPKKATKPRKRAKKVEEGYVGGMWIDRQMHAAAVSRDHHGDGAVLP
Ga0318530_1043702123300031959SoilSVPPGARNEPKKATKPRKRAKKVEKGYVGGMRIDRQMHAAAVSRDHHGDGAVLP
Ga0315268_1144233413300032173SedimentLVVGVELVALAPPCPSVPPGAGNQPKKAVKPRKRAKKIEERYVDPIGRVHRDVHAPAIRRDGDGDPATISGSK
Ga0315271_1075076013300032256SedimentVVVALAALAPPCPSVPPGAGNQPKKAVKPRKRAKKIEERYVSQTGRLDRDVHAPTIRPDGDGDLAAIP
Ga0364945_0290975_225_5063300034115SedimentDRWWSSLAALVPPCPSVPPGAGNQPKKATKPRKRANKVEEGYVAETGRLDRNVHTPAIRRDGDGDLAASTGFEPAQSGLHVAWPQGSCSVRAV


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