Metagenome / Metatranscriptome Family F095284

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F095284
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	92 residues
Representative Sequence	MISRLLATLVMLLLAFVAFSDNALNAGYFTTITGFLFLFHAVVIWFKWGTIGRIFYAAEGNDPIIETASKVVRRMGFRRHDPSSHHSPSSNR
Number of Associated Samples	68
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	42.86 %
% of genes near scaffold ends (potentially truncated)	25.71 %
% of genes from short scaffolds (< 2000 bps)	95.24 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (62.857 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (27.619 % of family members)
Environment Ontology (ENVO)	Unclassified (40.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (72.381 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 57.50% β-sheet: 0.00% Coil/Unstructured: 42.50%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF08883	DOPA_dioxygen	7.69
PF00496	SBP_bac_5	7.69
PF00171	Aldedh	3.85
PF08240	ADH_N	1.92
PF04828	GFA	1.92
PF00355	Rieske	1.92
PF07286	D-Glu_cyclase	1.92
PF12760	Zn_Tnp_IS1595	0.96
PF13602	ADH_zinc_N_2	0.96
PF03992	ABM	0.96
PF00107	ADH_zinc_N	0.96
PF00296	Bac_luciferase	0.96
PF13701	DDE_Tnp_1_4	0.96
PF01609	DDE_Tnp_1	0.96
PF00149	Metallophos	0.96
PF02308	MgtC	0.96
PF02900	LigB	0.96
PF13586	DDE_Tnp_1_2	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3805	Aromatic ring-cleaving dioxygenase	Secondary metabolites biosynthesis, transport and catabolism [Q]	7.69
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	3.85
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	3.85
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	3.85
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.92
COG4336	Uncharacterized conserved protein YcsI, UPF0317/DUF1446 family	Function unknown [S]	1.92
COG1285	Magnesium uptake protein YhiD/SapB, involved in acid resistance	Inorganic ion transport and metabolism [P]	0.96
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.96
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.96
COG3174	Membrane component of predicted Mg2+ transport system, contains DUF4010 domain	Inorganic ion transport and metabolism [P]	0.96
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.96
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.96
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.96
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.96
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.86 %
All Organisms	root	All Organisms	37.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.86 %
cellular organisms	root	All Organisms → cellular organisms	37.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.86 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.86 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.24 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.86 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	9.52 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.95 %
Holosporales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales	0.95 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.57 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.90 %
Alphaproteobacteria bacterium MarineAlpha12_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha12_Bin1	0.95 %
Yersiniaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Yersiniaceae	0.95 %
Candidatus Paracaedibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae	0.95 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.57 %
Rhodovastum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovastum	0.95 %
Candidatus Odyssella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella	0.95 %
Yersinia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Yersiniaceae → Yersinia	0.95 %
Alphaproteobacteria bacterium MarineAlpha12_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha12_Bin1	0.95 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.57 %
unclassified Candidatus Odyssella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella → unclassified Candidatus Odyssella	0.95 %
Yersinia pseudotuberculosis complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Yersiniaceae → Yersinia → Yersinia pseudotuberculosis complex	0.95 %
Rhodovastum atsumiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovastum → Rhodovastum atsumiense	0.95 %
Alphaproteobacteria bacterium MarineAlpha12_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha12_Bin1	0.95 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.57 %
Candidatus Odyssella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella → unclassified Candidatus Odyssella → Candidatus Odyssella sp.	0.95 %
Yersinia similis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Yersiniaceae → Yersinia → Yersinia pseudotuberculosis complex → Yersinia similis	0.95 %
Rhodovastum atsumiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovastum → Rhodovastum atsumiense	0.95 %
Alphaproteobacteria bacterium MarineAlpha12_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha12_Bin1	0.95 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.95 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001686\|C688J18823_10716971	Not Available	636	Open in IMG/M
3300002568\|C688J35102_117920504	Not Available	515	Open in IMG/M
3300002568\|C688J35102_118759004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Holosporales → Candidatus Paracaedibacteraceae → Candidatus Odyssella → unclassified Candidatus Odyssella → Candidatus Odyssella sp.	593	Open in IMG/M
3300002568\|C688J35102_118946196	Not Available	617	Open in IMG/M
3300002568\|C688J35102_120262290	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300004081\|Ga0063454_100999329	Not Available	673	Open in IMG/M
3300004081\|Ga0063454_101691800	Not Available	550	Open in IMG/M
3300005184\|Ga0066671_10973733	Not Available	535	Open in IMG/M
3300005332\|Ga0066388_101220030	Not Available	1288	Open in IMG/M
3300005347\|Ga0070668_100766760	Not Available	855	Open in IMG/M
3300005437\|Ga0070710_11325120	Not Available	536	Open in IMG/M
3300005618\|Ga0068864_102488016	Not Available	524	Open in IMG/M
3300005764\|Ga0066903_101909457	Not Available	1138	Open in IMG/M
3300005841\|Ga0068863_101391865	Not Available	709	Open in IMG/M
3300006755\|Ga0079222_12607746	Not Available	508	Open in IMG/M
3300006881\|Ga0068865_102047312	Not Available	520	Open in IMG/M
3300007255\|Ga0099791_10348560	Not Available	709	Open in IMG/M
3300009038\|Ga0099829_10294566	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300009088\|Ga0099830_10953113	Not Available	710	Open in IMG/M
3300009089\|Ga0099828_10204162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1764	Open in IMG/M
3300009089\|Ga0099828_10406395	All Organisms → cellular organisms → Bacteria	1228	Open in IMG/M
3300009090\|Ga0099827_10606871	Not Available	944	Open in IMG/M
3300009090\|Ga0099827_11882839	Not Available	521	Open in IMG/M
3300009094\|Ga0111539_12831462	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300009098\|Ga0105245_13262507	Not Available	502	Open in IMG/M
3300009137\|Ga0066709_103369291	Not Available	581	Open in IMG/M
3300009156\|Ga0111538_11885884	Not Available	752	Open in IMG/M
3300009553\|Ga0105249_12763288	Not Available	563	Open in IMG/M
3300009840\|Ga0126313_11402126	Not Available	579	Open in IMG/M
3300010040\|Ga0126308_10577647	Not Available	765	Open in IMG/M
3300010041\|Ga0126312_10566102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	815	Open in IMG/M
3300010044\|Ga0126310_10160477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1441	Open in IMG/M
3300010045\|Ga0126311_10362173	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300010048\|Ga0126373_10772539	Not Available	1022	Open in IMG/M
3300010360\|Ga0126372_10604102	Not Available	1053	Open in IMG/M
3300010362\|Ga0126377_12809526	Not Available	561	Open in IMG/M
3300010399\|Ga0134127_12651994	Not Available	581	Open in IMG/M
3300010400\|Ga0134122_11967314	Not Available	622	Open in IMG/M
3300011119\|Ga0105246_10303570	Not Available	1290	Open in IMG/M
3300011269\|Ga0137392_10072438	All Organisms → cellular organisms → Bacteria → Proteobacteria	2654	Open in IMG/M
3300011269\|Ga0137392_10361802	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300011269\|Ga0137392_10425910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1102	Open in IMG/M
3300011270\|Ga0137391_10211083	All Organisms → cellular organisms → Bacteria	1687	Open in IMG/M
3300011332\|Ga0126317_10513774	Not Available	514	Open in IMG/M
3300012199\|Ga0137383_10195442	Not Available	1483	Open in IMG/M
3300012202\|Ga0137363_10222069	Not Available	1525	Open in IMG/M
3300012202\|Ga0137363_10943548	Not Available	732	Open in IMG/M
3300012205\|Ga0137362_10485132	Not Available	1069	Open in IMG/M
3300012206\|Ga0137380_10127940	Not Available	2320	Open in IMG/M
3300012207\|Ga0137381_10091284	Not Available	2571	Open in IMG/M
3300012207\|Ga0137381_11295327	Not Available	621	Open in IMG/M
3300012209\|Ga0137379_11749638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300012210\|Ga0137378_10202232	Not Available	1849	Open in IMG/M
3300012212\|Ga0150985_100898177	Not Available	1041	Open in IMG/M
3300012212\|Ga0150985_100998306	Not Available	1584	Open in IMG/M
3300012212\|Ga0150985_102561779	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300012212\|Ga0150985_102782384	All Organisms → cellular organisms → Bacteria → Proteobacteria	1438	Open in IMG/M
3300012212\|Ga0150985_105712539	Not Available	1550	Open in IMG/M
3300012212\|Ga0150985_105712539	Not Available	1550	Open in IMG/M
3300012212\|Ga0150985_106963528	Not Available	574	Open in IMG/M
3300012212\|Ga0150985_110099608	Not Available	847	Open in IMG/M
3300012212\|Ga0150985_110182307	All Organisms → cellular organisms → Bacteria	1457	Open in IMG/M
3300012212\|Ga0150985_113030198	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300012212\|Ga0150985_113055377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovastum → Rhodovastum atsumiense	566	Open in IMG/M
3300012212\|Ga0150985_113952872	Not Available	707	Open in IMG/M
3300012212\|Ga0150985_114615253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Yersiniaceae → Yersinia → Yersinia pseudotuberculosis complex → Yersinia similis	733	Open in IMG/M
3300012212\|Ga0150985_115386594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300012212\|Ga0150985_117654016	All Organisms → cellular organisms → Bacteria → Proteobacteria	1577	Open in IMG/M
3300012212\|Ga0150985_121171077	Not Available	508	Open in IMG/M
3300012349\|Ga0137387_10242981	Not Available	1297	Open in IMG/M
3300012349\|Ga0137387_10434241	Not Available	953	Open in IMG/M
3300012357\|Ga0137384_10272812	Not Available	1409	Open in IMG/M
3300012359\|Ga0137385_10325149	Not Available	1320	Open in IMG/M
3300012469\|Ga0150984_100011399	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300012469\|Ga0150984_106875368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	739	Open in IMG/M
3300012469\|Ga0150984_110469563	Not Available	558	Open in IMG/M
3300012469\|Ga0150984_110718179	Not Available	878	Open in IMG/M
3300012469\|Ga0150984_115030182	All Organisms → cellular organisms → Bacteria → Proteobacteria	2642	Open in IMG/M
3300012469\|Ga0150984_116216972	All Organisms → cellular organisms → Bacteria → Proteobacteria	833	Open in IMG/M
3300012469\|Ga0150984_116232815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	889	Open in IMG/M
3300012469\|Ga0150984_119757516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1167	Open in IMG/M
3300012469\|Ga0150984_121278964	All Organisms → cellular organisms → Bacteria → Proteobacteria	768	Open in IMG/M
3300012469\|Ga0150984_122890756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1328	Open in IMG/M
3300012469\|Ga0150984_123033768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1256	Open in IMG/M
3300012905\|Ga0157296_10373850	Not Available	525	Open in IMG/M
3300012923\|Ga0137359_11012770	Not Available	713	Open in IMG/M
3300012957\|Ga0164303_10664614	Not Available	697	Open in IMG/M
3300013306\|Ga0163162_12245848	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300013308\|Ga0157375_12799561	Not Available	583	Open in IMG/M
3300014497\|Ga0182008_10898434	Not Available	521	Open in IMG/M
3300014745\|Ga0157377_10717520	Not Available	728	Open in IMG/M
3300014968\|Ga0157379_11715890	Not Available	615	Open in IMG/M
3300015371\|Ga0132258_10804350	Not Available	2370	Open in IMG/M
3300015374\|Ga0132255_103603779	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300021560\|Ga0126371_10743265	Not Available	1128	Open in IMG/M
3300025938\|Ga0207704_11220406	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300026089\|Ga0207648_12041390	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300026095\|Ga0207676_12126859	Not Available	560	Open in IMG/M
3300027846\|Ga0209180_10611896	Not Available	601	Open in IMG/M
3300027862\|Ga0209701_10109277	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300027862\|Ga0209701_10281220	Not Available	962	Open in IMG/M
3300027882\|Ga0209590_10707411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	644	Open in IMG/M
3300030858\|Ga0102759_1935393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	904	Open in IMG/M
3300030988\|Ga0308183_1159697	Not Available	561	Open in IMG/M
3300031058\|Ga0308189_10480785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha12_Bin1	531	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.19%
Host-Associated	Host-Associated	43.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.24%
Plants	Host-Associated → Plants	43.81%
Aquatic	Environmental → Aquatic	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.24%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.00%
Freshwater	Environmental → Aquatic → Freshwater	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	17.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.43%
Loam	Environmental → Terrestrial → Soil → Loam	9.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.57%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.67%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	17.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.57%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	6.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.95%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.62%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	15.24%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	10.48%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	6.67%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300030858	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J18823_107169712	3300001686	Soil	MISRLLATLVMLLLAFVAFSDNALNAGYFTTITGFLFLLLAVVIWFKWGTIGRIFYAVEGNDPIIETASKVVSRIGFPRHDRSSHHSPSSN*
C688J35102_1179205041	3300002568	Soil	MAFLQPKNPKGDAGQNGVEMQNGRLKMISRLLATLVILILAFLAFWSDALNDGYFTTITGVLFLFLAIVIWFKWGTIGRIFNATEGNDPIIETASKVVGRMAFRRPDPSSHHSPSSN*
C688J35102_1187590041	3300002568	Soil	AGQAGIETQNGRFKMIIRLLATLVMLLLAFVAFSDDALNAGYFSTITGFLFLFLAVVIWFKWGAIGRIFCAAEGNDPIIETASKVVGRMGFRRHDPSSRHSPLSN*
C688J35102_1189461961	3300002568	Soil	MALLQPKNPKGDVRQAGVGTQNGRFKMISRLLATLVMLVLALLAFWNDALNTGYFTTIAGFVFLFLAVVIWFKWGNIGRIFNATEGNDPIVETTSKVVRHMGFSRHDPSSHHSSPSNR*
C688J35102_1202622902	3300002568	Soil	MISRLLATLVMLLLAFVAFSDNALNAGYFTTITGFLFLLLAVVIWFKWGTIGRIFYAVEGNDPIIETASKVVSRIGFPRHDQSSHHSPSSNR*
Ga0063454_1009993291	3300004081	Soil	MISRLLATLGMLLLAFVAFSDNALNAGYFTTVTGFLFLLLAVVIWFKWGTIGRIFYAVEGNDPIIETASKVVSRIGFPRHDRSSHHLPSSNR*
Ga0063454_1016918002	3300004081	Soil	GVETQNGRFKLISRLLATLLMLLLAFVAFSNDALNAGYFTTITGFLFLFLAVVIWFKWRTIGRIFYAAEGNDPIIETASKVVGRMGFRRHDPSSHHSPSSNR*
Ga0066671_109737331	3300005184	Soil	MISRVLATFAMLLLAFVGFWGNALDGGYFSTITGFLFLFLAVVTWFKWATIGRILNAAEGDPIFGTVAKVVGRMGFRRRDPSSHPSPSSNR*
Ga0066388_1012200302	3300005332	Tropical Forest Soil	MIGRLSATIVMLLFAFVAFWDNALGAGSWTNPFGFLFLFLAVVIWFKWAVIQSSFYPAKGDDPIIRTASKVIISSLGFRRHDPPLRRSSSSDR*
Ga0070668_1007667603	3300005347	Switchgrass Rhizosphere	MIGRLSATFVMLLLAFVAFWSDALNAGYFATITGFLFLFLAVVVWFKWATIGRIFYAAEGNDPIIETASKVVGRMAFRRPDPPPRHSPSSSR*
Ga0070710_113251202	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MIGRLSATLVMLLLAFVAFWSNALNAGYFATVTGFLFIFLAVVIWFKWGTIGRIFNASGGNDPIIETASKVVGRMGFRRHDPSSHHSPSSNR*
Ga0068864_1024880161	3300005618	Switchgrass Rhizosphere	MIGRLSATFVMLLLAFLAFWSNALNTGYFATITGFLFLFLAVVIWFKWGTIGRIFNAAEGNDPIIETASKVVGRMGFRRHDPSSHHSPSSSR*
Ga0066903_1019094571	3300005764	Tropical Forest Soil	MIGRLSATIVMLLFAFVAFWDNALGAGSWTNPFGFLFLFLAVVIWFKWAVIQSSFYAAKGDDPIIRTASKVIISSLGFRRHDPPLRRSSSSNR*
Ga0068863_1013918652	3300005841	Switchgrass Rhizosphere	MISRLLATLVMLLLAFVAFSDDALNAGYFTTITGFLFLFLAIVIWFKWGTIGRIFNAAEGNDPIIETASKVVGRMAFRRHDSSSHHSPSSNQ*
Ga0079222_126077461	3300006755	Agricultural Soil	GKLLATLVMLELAFVALWANALNTGYFSTITGFLYLFLAVVIWFKWGTIGRIFNAAEGNDPIIETASKVVGRMGFPLHDPSLHHSRSSNR*
Ga0068865_1020473122	3300006881	Miscanthus Rhizosphere	MIGRLSATFVMLLLAFLAFWSDALNAGYFATITGFLFLFLTVVVWFKWATIGRIFYAAEGNDPIIETASKVVGRMAFRRPDPSS
Ga0099791_103485601	3300007255	Vadose Zone Soil	MIGRLLATLVMLLLAFVAFWDNALDAGYLTNPYGILFLFLAVVIWFKWATIGRIFYAGEGDDPIIGTASKVVGRMGFRRHDPSSRPSPSSNR*
Ga0099829_102945662	3300009038	Vadose Zone Soil	MIGRLLATLVMLLLAFVAFWDNALDAGYLTNPYGILFLFLAVVIWFKWATIRRIFYAAEGDPIIGTASKVIGGMGFRRDDPPSHRSPSSNR*
Ga0099830_109531132	3300009088	Vadose Zone Soil	MLLLAFVAFWDNALDAGNLTNPYGFLFLFLAVVIWFKWAAIRRIFYAAEGDPIIGTASKVVGRMGFRRHDPALRRSSSSNR*
Ga0099828_102041622	3300009089	Vadose Zone Soil	MLLLAFVAFWDNALDAGYLTNPYGILFLFLAVVIWFKWATIRRIFYAAEGDPIIGTASKVIGGMGFRRDDPPSHRSPSSSR*
Ga0099828_104063952	3300009089	Vadose Zone Soil	ETQNGRFKMISRLLATLVMLLLAFVAFWDNALDAGNLTNPYGFLFLFLAVVIWFKWAAIRRIFYAAEGDPIIGTASKVVGRMGFRRHDPALRRSSSSNR*
Ga0099827_106068713	3300009090	Vadose Zone Soil	MISRLLATLVMLLLAFVAFWDNALDAGYYFTTITGFLFLFLAVVIWFKWAAIRRIFYAAEGDPIIGTASKVVGRMGFRRH
Ga0099827_118828391	3300009090	Vadose Zone Soil	QNGRLKMIGRLLATLVMLLLAFVAFWGNALDAGYLTNPYGFLFLFLAVVIWFKWATIRRIFYAAEGDPIIGTASKVVGRMGFRRHDPPSRRSPSSN*
Ga0111539_128314622	3300009094	Populus Rhizosphere	SRVLSTILMLLFAFVAFSYDSLNTVYFAIITGFRFLFLAVMIWFKWGTIGRIFYAAEGNDPIIETASKVVGRIGFRRHDPSSHHSPSSNR*
Ga0105245_132625071	3300009098	Miscanthus Rhizosphere	MLLLAFLAFWSDALNAGYFATITGFLFLFLTVVVWFKWATIGRIFYAAEGNDPIIETASKVVGRMAFRRPDPSSHHSPSSSR*
Ga0066709_1033692911	3300009137	Grasslands Soil	MLIRIFVTTALALFGIYAFWSNALDGGHFTNPYGFLFLFLAVVIWFKWASIGRIFYAAEGDPIFGTASKVVGRMGFRRHDPPSHRSPSANRQRLGLQSITSPSK*
Ga0111538_118858842	3300009156	Populus Rhizosphere	MLLLAFVAFSDNALNTGYFATITGFLFLFLAVVIWFKWGTIGRIFNASGGNDPIIETASKVVGRMGFRRHDPSSHHSPSSSR*
Ga0105249_127632882	3300009553	Switchgrass Rhizosphere	LKGATLVAKSQGDAGQAGVETQNGRFKMIGRLSATFVMLLLAFLAFWSNALNAGYFATVTGFLFLFLAVVIWFKWGTIGRIFNAAEGNDPIIETASKIVGRMEFRRPDPSSHHSPSSSR*
Ga0126313_114021261	3300009840	Serpentine Soil	MLVLAFVAFSDNALNAGYFTTITGFLFLFLAVVIWFKWGTIGRIFYAAEGNDPIIETASKVVGHMGFRRHDPSSHHSPSSN*
Ga0126308_105776471	3300010040	Serpentine Soil	MLLLAFVAFSDSALNVGYFTTITGFLFLFLAVVIWFKWGTIGRIFYAAEGNDPVIETASKVVRRMGFRRHDPSSHHSPSSNR*
Ga0126312_105661022	3300010041	Serpentine Soil	MISRLLATLVMLLLAFVAFSDNALNTGYFATITGFLFLFLAVVIWFKWGTIGRIFYAMEGNDPIIGTASEVVGRMVFRRHDPSSHHSPSSNR*
Ga0126310_101604773	3300010044	Serpentine Soil	MISRLLATLVMLLLAFVAFSDNALNAGYFTTITGFLFLFHAVVIWFKWGTIGRIFYAAEGNDPIIETASKVVRRMGFRRHDPSSHHSPSSNR*
Ga0126311_103621732	3300010045	Serpentine Soil	MISRLLATLVMLLLAFIAFWDNALNAGYFTTITGFLFLFLAVVIWFKWGTIGRIFYATEGNDPIIETASKVVRRMGFRRHDPSSHHSPSSNR*
Ga0126373_107725392	3300010048	Tropical Forest Soil	MIGRLSATIVMLLFAFVAFWDNALGAGSWTNPFGFLFLFLAVVIWFKWAVIQSSFYAAKGDDPIIRTASKVIISSLGFRRHDPPLRRSSSSDR*
Ga0126372_106041022	3300010360	Tropical Forest Soil	MIGRLSATIVMLLFAFVAFWDNALGAGSWTNPFGFLFLFLAVVIWFKWAVIQSSFYAVKGDDPIIRTASKVIISSLGFRRHDPPLRRSSSSDR*
Ga0126377_128095262	3300010362	Tropical Forest Soil	MIGRLSATIVMLLFAFVAFWDNALGAGSWTNPFGFLFLFLAVVIWFKWAVIQSSFYAVKGDDPIIRTASKVIISSLGFRRHDPPLRRSSSFNR*
Ga0134127_126519942	3300010399	Terrestrial Soil	MLLLAFVAFSDNALNTGYFATITGFLFLFLAVVIWFKWANIGRIFNAMEGDDPIIETASKVVGRMGFRRHDPPSHRSLSSNR*
Ga0134122_119673141	3300010400	Terrestrial Soil	MISRLLATLVLLLLAFLAFWSNALNTGYFATMTGFLFLFLAVVIWFKWGTIGRIFNAAEGNDPIIETASKVVGRMAFRRPDPSSHHSPSSSR*
Ga0105246_103035701	3300011119	Miscanthus Rhizosphere	MLLLAFLAFWSDALNAGYFATITGFLFLLLTVVVWFKWATIGRIFYAAEGNDPIIETASKVVGRMAFRRPDPSSHHSPSSSR*
Ga0137392_100724382	3300011269	Vadose Zone Soil	MLLLAFVAFWDNALDAGYLTNPYGILFLFLAVVIWFKWATIRRIFYAAEGDPIIGTASKVIGGMGFRRDDPPSHRSPSSNR*
Ga0137392_103618022	3300011269	Vadose Zone Soil	MISRLLATLVMLLLAFVAFWDNALDAGNLTNPYGFLFLFLAVVIWFKWAAIRRIFYAAEGDPIIGTASKVVGRMGFRRHDPALRRSSSSNR*
Ga0137392_104259102	3300011269	Vadose Zone Soil	VFDRFIEGEAGSAGVETQNGRLKMIGRLFTTLVMLLFAFVAFWDNALDAGYYFTTITGFLFLFLAVVIWFKWATIGRIFYAAEGDDPIIGTAAKVVGRMGFRRHDPSSRPSPSSNR*
Ga0137391_102110833	3300011270	Vadose Zone Soil	MIGRLFTTLVVLLLAFVAFWDNALDAGYYFTTVTGFLFLLLAVVIWFKWATIGRIFYAAEGDDPIIGTASKVVGRMGFRRHDPALRRSSSSNR*
Ga0126317_105137742	3300011332	Soil	MLLLAFIAFSDDSLNAGYFTTITGSLLLFLAVVIWFKWGTIGRIFYAAEGNDPIIETASKVVGRMGFRRHDPSSHHSPSSN*
Ga0137383_101954422	3300012199	Vadose Zone Soil	MLLLAFVAFWDNALDAGYYFTTITGFLFLFLAVVIWFKWAATRRIFYAAEGDPIIGTASKVVGRMGFRRHDPSSRPSPSSNR*
Ga0137363_102220691	3300012202	Vadose Zone Soil	AFWDNGLNAGYFTTITGFLFLFLAVVIWFKWATIGRIFYAAEGNDPIIGTASRVVSRMGFRRHDPSSHHSPSSNR*
Ga0137363_109435481	3300012202	Vadose Zone Soil	MIGRLFTTLVVLLLAFVAFWDNALDAGYYFTTVTGFLFLLLAVVIWFKWATIRRIFYAAEGDPIIGTASKVIGGMGFRRDDPPSHRSPSSNR*
Ga0137362_104851322	3300012205	Vadose Zone Soil	MIGRLFTTLVVLLLAFVAFWDNALDAGYYFTTVTGFLFLLLAVVIWFKWATIGRIFYAAEGDDPIIGTASKVVGRMGFRRHDPSSHHSPSSNR*
Ga0137380_101279402	3300012206	Vadose Zone Soil	MIGRLLATLVMLLLAFVAFWGNALDAGYLTNPYGFLFLFLAVVIWFKWATIRRIFYAAEGDPIIGTASKVVGRMGFRRHDPPSRRSPSSN*
Ga0137381_100912843	3300012207	Vadose Zone Soil	MQNGRLKMIGRLLATLVMLLLAFVAFWGNALDAGYLTNPYGFLFLFLAVVIWFKWATIRRIFYAAEGDPIIGTASKVVGRMGFRRHDPPSRRSPSSN*
Ga0137381_112953271	3300012207	Vadose Zone Soil	VFDRFIEGEAGQAGVETQNGRFKMISRLLATLVMLLLAFVAFWDNALDAGYYFTTTGFLFLFLAVVIWFKWATIGRIFYAAEGDPIIGTASKVVGRMGFRRQDPSSHHSPSSNR*
Ga0137379_117496381	3300012209	Vadose Zone Soil	RLKMIGRLFTTLVVLLSAFVAFWDNALDAGYYFTTVTGFLFLLLAVVIWFKWATIGRIFYAAEGDDPIIGTASKVVGRMGFRRHDPSSHHSPSSNR*
Ga0137378_102022323	3300012210	Vadose Zone Soil	MISRLLATLVMLLLAFVAFWDNALDAGYYFTTITGFLFLFLAVVIWFKWAAIRRIFYAAEGDPIIGTASKVVGRMGFRRHDPPSRRSPSSN*
Ga0150985_1008981772	3300012212	Avena Fatua Rhizosphere	MLIRIFVTATFALFGIYAFWSDALDGGYFTTITGFLFLFLAVVIWFKWANIGRIFNAAEGDDPIIETASKVVDHMGFRRHDPPSHRSPSSNR*
Ga0150985_1009983063	3300012212	Avena Fatua Rhizosphere	MLLLAFVAFWDNRLDAGYFTTTTGFLFIFLAVVIWFKWATIGRIFYGAAGNDPIIETASKVVGRMGFRRHDPSSHHSPSSNR*
Ga0150985_1025617792	3300012212	Avena Fatua Rhizosphere	MLLLAFVAFCDNALNAGYFTTITGFLFLLLAVVIWFKWGTIGRIFYAAEGSDPIIETAAKVVGRMGFRRYDQSWHHSPSSNR*
Ga0150985_1027823843	3300012212	Avena Fatua Rhizosphere	MLLLAFAALSDDALNAGYFTTITGFLFLFLAVVIWFKWGTIGRIFYAAEGNDPIIETASKVVGHMGFRRHDPSSHHSPSSNR*
Ga0150985_1057125391	3300012212	Avena Fatua Rhizosphere	MLLLALVEFWSNALNTGYFAPVTGFLFLFLVVVVWFKWGTIGRIFNAAKGNDPIIETASKVVDRMGFVRHDPAPRHSPSSSR*
Ga0150985_1057125394	3300012212	Avena Fatua Rhizosphere	MIGRLSATLAMMLLAFVAFSDNALNAGYFATVTGFLFLFLAAVVWFKWGTIGRIFNAAEGNDPIIETTSKVVGRMGFVRHDPAPRHS
Ga0150985_1069635281	3300012212	Avena Fatua Rhizosphere	MLLLAFVAFWDDALNASYFNAVTGFLFLFLAIVIWFKWGAIGRIFYAAEEKNPFIETASKVVGRMGFRRHDPSSHHSPSSNR*
Ga0150985_1100996082	3300012212	Avena Fatua Rhizosphere	MLLLAFLAFWSNALNAGYFAIVTGFLFLFLAIVIWFKWGTIGRIFNAAEGNDPIIETASKVVGRMGLRRPDPSSHHSPSSNR*
Ga0150985_1101823072	3300012212	Avena Fatua Rhizosphere	MLLLAFVAFSGDSLNAGYFTTITGFLLLSLAIVIWFKWGTIGRIFYAAEGNDPIIETASKVVGHMGFRRHDPSSHHSPSSNR*
Ga0150985_1130301982	3300012212	Avena Fatua Rhizosphere	MLLLAFVAFSDNALNAGYFSTITGFLFLFLAVVIWFKWGTIGRIFYAAEGNDPIIETASKVVGRMGFRRHDPSSRHSPSSN*
Ga0150985_1130553772	3300012212	Avena Fatua Rhizosphere	MLLLAFLAFWSDALNAGYFATIAGFLFLFLAVVIWFKWGTIGRIFNAAEGNDPIIETASKVVGRIGFRRPDPSSHHSPSSSR*
Ga0150985_1139528721	3300012212	Avena Fatua Rhizosphere	MLLLGFVAFWDNALNAGYFATITGFLFLFLAVVIWFKWGTIGRIFYAAEGNDPIIETASKVVSRIGFPRHDRSSHHSPSSNR*
Ga0150985_1146152531	3300012212	Avena Fatua Rhizosphere	GVETQNGRLKMISRLLATLVILILAFLAFWSDALNDGYFTTITGVLFLFLAIVIWFKWGIIGRIFNAAEGNNPIIETASKVVGRMAFRRPDPSSHHSPFSSR*
Ga0150985_1153865941	3300012212	Avena Fatua Rhizosphere	MLLLAFVAFSDDALNAGYFTTITGLLLLCLAVVIWFKWGTIGRIFYAAEGNDPIIDTASKVAGRMGFQRHNPSSHHSPSSN*
Ga0150985_1176540161	3300012212	Avena Fatua Rhizosphere	MIGRLLATLVMLVLAFVAFSDDALNAGYFTTVTGFLFLFLAVAIWFKWGTIGRIFNAAEGTDPIIETASKVVSHIGFRRHDPSSHHSPSSSR*
Ga0150985_1211710771	3300012212	Avena Fatua Rhizosphere	MLLLAFVAFSDNALNAGYFTTITGFLFLLLAVVIWFKWGTIGRIFYAVEGNDPIIETASKVVSRIGFPRHDRSSHHSPSSN*
Ga0137387_102429811	3300012349	Vadose Zone Soil	KMIGRLFTTLVVLLLAFVAFWDNALDAGYYFTTVTGFLFLLLAVVIWLKWATIGRIFYAAEGDDPIIGTASKVVGRMGFRRHDPSSHHSPSSNR*
Ga0137387_104342411	3300012349	Vadose Zone Soil	LLATLVMLLLAFVAFWGNALDAGYLTNPYGFLFLFLAVVIWFKWATIRRIFYAAEGDPIIGTASKVVGRMGFRRHDPPSRRSPSSN*
Ga0137384_102728123	3300012357	Vadose Zone Soil	MISRLLATLVMLLLAFVAFWDNALDAGYYFTTITGFLFLFLAVVIWFKWAAIRRIFYAAEGDPIIGTASKVVGRMGFRRHDPSSRPSPSSNR*
Ga0137385_103251492	3300012359	Vadose Zone Soil	MQNGRLKMIGILLATLVMLLLAFVAFWGNALDAGYLTNPYGFLFLFLAVVIWFKWATIRRIFYAAEGDPIIGTASKVVGRMGFRRHDPPSRRSPSSN*
Ga0150984_1000113992	3300012469	Avena Fatua Rhizosphere	GQAGVETQNGRLKMISRLLATLVMLLLAFVAFWDDALNASYFNAVTGFLFLFLAIVIWFKWGAIGRIFYAAEEKNPFIETASKVVGRMGFRRHDPSSHHSPSSNR*
Ga0150984_1068753682	3300012469	Avena Fatua Rhizosphere	MISRVLATFVMLVLAFVAFSDDALNGGYFATITGFLFLFLAVVIWFKGGSIGRVFDAAEGKDPIFETASKVVGRMGFRRHDPSSHHSPSSN*
Ga0150984_1104695632	3300012469	Avena Fatua Rhizosphere	LAFLAFWSNALNIGYFATITGFLFLFLAAVIWFKWGTIGRIFNASGGNDPIIETASKVVGRMAFRRPDPSSHHSPSSDR*
Ga0150984_1107181793	3300012469	Avena Fatua Rhizosphere	AFVAFWDNRLDAGYFTTTTGFLFIFLAVVIWFKWATIGRIFYGAAGNDPIIETASKVVGRMGFRRHDPSSHHSPSSNR*
Ga0150984_1150301823	3300012469	Avena Fatua Rhizosphere	MLVLAFVAFWSNALSGGYFTTITGFLFLFLAVVIWFKWGTIGRIFYAAEGNDPIIETASKVVGRMGFRRHDPSSHHSPSSN*
Ga0150984_1162169722	3300012469	Avena Fatua Rhizosphere	MISRLLATLVMLLLAFVAFSDNALNAGYFSTITGFLFFFLAVVIWFKWGTIGRIFYATEGNDPIIETASKVVGRMGFWRHDPSSRHSPSSNR*
Ga0150984_1162328151	3300012469	Avena Fatua Rhizosphere	ETQNGRFKMIGRLLATLVMLVLAFVAFSDDALNAGYFTTVTGFLFLFLAVAIWFKWGTIGRIFNAAEGTDPIIETASKVVSHIGFRRHDPSSHHSPSSSR*
Ga0150984_1197575161	3300012469	Avena Fatua Rhizosphere	MLLLAFVAFSDDALNAGYFTTITGFLFLFLAVVIWFKWGTIGRIFYAAEGNDPIIETASKVVRRLGFRRHDPSSHPSPSSNR*
Ga0150984_1212789641	3300012469	Avena Fatua Rhizosphere	MLLLAFVAFSGDSLNAGYFTTITGFLLLSLAIVIWFKWGTIGRILYAAEGNDPIIETASKVVGHMGFRRHDPSSHHSPSSNR*
Ga0150984_1228907562	3300012469	Avena Fatua Rhizosphere	MIGRLSATLAMMLLAFVAFSDNALNAGYFATVTGFLFLFLAAVVWFKWGTIGRIFNAAEGNDPIIETTSKVVGRMGFVRHDPAPRHSPSSNR*
Ga0150984_1230337682	3300012469	Avena Fatua Rhizosphere	MLLLAFAALSDDALNAGYFTTITGFLFLFLAVVIWFKWGTIGRIFYAAEGNDPIIETASKVVGRMGFRRHHPSSHHSPSSNR*
Ga0157296_103738501	3300012905	Soil	RDTGQAGLEMQNGRFKMIGRLSATLVMLLLAFLAFWNDALNTGYFATVTGFLFLFLAAVIWFKWGTIGRIFNAAGGNDPIIETASKVVGQIGFRRPDPPSRHSPSSSR*
Ga0137359_110127702	3300012923	Vadose Zone Soil	MLLLAFVAFWDNGLNAGYFTTVTGFLFLFLAVVIWFKWATIGRIFYAAEGDDPIIGTASKVVGRMGFRRHDPSSHHSPSSNR*
Ga0164303_106646141	3300012957	Soil	MLLLAFLAFWSNALNAGYFATITGFLFLFLAIVIWFKWGTIGRIFNAAEGNDPIIETASKVVDRMGFVRHDPPPRHSPSSNR*
Ga0163162_122458482	3300013306	Switchgrass Rhizosphere	LPEPLKGATLVAKSQGDAGQAGVETQNGRFKMIGRLSATFVMLLLAFLAFWSDALNAGYFATVTGFLFLLLAVVVWLKWETIGRIFNAAEGNDPIIETASKIVGRMEFRRPDP
Ga0157375_127995611	3300013308	Miscanthus Rhizosphere	RQDDAGQTGIEAQNGRFKMIGRVLATLVMLLLALLAFWSNALNTGYFATITGFLFLFLAVVVWFKWGTIGRIFNAAEGNDPIIETASKVVGRMGFRRHDPSSHHSPSSSR*
Ga0182008_108984342	3300014497	Rhizosphere	MISRLLATLVMLLLAFVAFSDNALNAGYFTTITGFLFLFLAVVIWYKWETIGRIFYAAEGNDPIIETASKVVGRMGFRRHDPSSHHSPSSN*
Ga0157377_107175201	3300014745	Miscanthus Rhizosphere	MAVKMISRLLGMFVMLLLAFAAFWSNALNAGYFATITGFLFLFLTVVVWFKWATIGRIFYAAEGNDPIIETASKVVGRMTFRRPDPPSRHSPSSNR*
Ga0157379_117158901	3300014968	Switchgrass Rhizosphere	MLLLAFVAFSDNALNTGYFATITGFLFLFLAIVIWFKWGTIGRIFNAAEGNDPIIETASKVVDRMGFVRHDPPPRHSPSSSR*
Ga0132258_108043503	3300015371	Arabidopsis Rhizosphere	MAVKMISRLLGMFVMLLLAFAAFWSNALNAGYFATITGFLFLFLAVMIWFKWGTIGRIFNASGGNDPIIETASKVVGRMGFRRHDPSSHHSPSSSR*
Ga0132255_1036037791	3300015374	Arabidopsis Rhizosphere	MAVKMISRLLGMFVMLLLAFAAFWSNALNAGYFATITGFLFLFLAIMIWFKWGTIGRIFNAAEGNDPIIETASKVVGRMGFRRHDPSSHHSPSTDSGWVCKV*
Ga0126371_107432652	3300021560	Tropical Forest Soil	MIGRLSATIVMLLFAFVAFWDNALGAGSWTNPFGFLFLFLAVVIWFKWAVIQSSFYAAKGDDPIIRTASKVIISSLGFRRHDPPLRRSSSSDR
Ga0207704_112204062	3300025938	Miscanthus Rhizosphere	MIGRLSATFVMLLLAFLAFWSDALNAGYFATITGFLFLFLAVMIWFKWRTIGRIFNASGGNDPIIETASKVVGRIGFRRPDPSSHHSPSSNR
Ga0207648_120413902	3300026089	Miscanthus Rhizosphere	PVRRQWIKPSCFAEFTMTPNRPPFKMAVKMIGRLSATFVMLLLAFLAFWSDALNTGYFATITGFLFLFLTVVVWFKWATIGRIFYAAEGNDPIIETASKVVGRMGFRRHDPSSHHSPSTDSGWVCKV
Ga0207676_121268592	3300026095	Switchgrass Rhizosphere	MLSRLLATLVMLILAFVAFWSDALNAGYFATITGFLFLFLAVMIWFKWGTIGRIFNAAEGNDPIIETASKVVRRIGFRRHDPSSHRSPSSNR
Ga0209180_106118961	3300027846	Vadose Zone Soil	MLLLAFVAFWDDALDAGYLTNPYGILFLFLAVVIWFKWATIRRIFYAAEGDPIIGTASKVIGGMGFRRDDPPSHRSPSSNR
Ga0209701_101092771	3300027862	Vadose Zone Soil	MISRLLATLVMLLLAFVAFWDNALDAGNLTNPYGFLFLFLAVVIWFKWAAIRRIFYAAEGDPIIGTASKVVGRMGFRRHDPALRRSSSSNR
Ga0209701_102812201	3300027862	Vadose Zone Soil	MIGRLLATLVMLLLAFVAFWDNALDAGYLTNPYGILFLFLAVVIWFKWATIRRIFYAAEGDPIIGTASKVIGGMGFRRDDPPSHRSPSSNR
Ga0209590_107074111	3300027882	Vadose Zone Soil	MIGRLFTTLVVLLLAFVAFWDNALDAGYYFTTVTGFLFLLLAVVIWFKWATIGRIFYAAEGDDPIIGTASKVVGRMGFRRHDPSSHHSPSSNR
Ga0102759_19353932	3300030858	Soil	MISRLSAALVMLLLAFVAFSDDALNAGYFTTITGFLFLFLAVLIWFKWGTIGRIFYAAEGNDPIIETASKVVGRMGFRRHDPASHHSPSSN
Ga0308183_11596971	3300030988	Soil	FKMIGRLSATFVMLLLAFLAFWSDALNDSYFTTITGFLFLFLAIVIWFKWETIGRIFNAAEGNDPIIETASKVVGRMAFRRPDPSSHHSPSSNR
Ga0308189_104807851	3300031058	Soil	QNERFKMISRLLAMLVMLLLAFVAFWDNALNSGYFTTIAGFLFLFLAVVIWFKWRIIGRIFYAAEGNDPIIETASKVVGRMGFRRHDPSSHHSPSSN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095284

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences