NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F095216

Metagenome / Metatranscriptome Family F095216

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F095216
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 35 residues
Representative Sequence MMAVRLLYALALLNLLVLLSDALYNVLGGLLPLGH
Number of Associated Samples 78
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 12.38 %
% of genes near scaffold ends (potentially truncated) 6.67 %
% of genes from short scaffolds (< 2000 bps) 72.38 %
Associated GOLD sequencing projects 75
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (97.143 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(25.714 % of family members)
Environment Ontology (ENVO) Unclassified
(39.048 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(42.857 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 52.38%    β-sheet: 0.00%    Coil/Unstructured: 47.62%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.53
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF09678Caa3_CtaG 20.00
PF13442Cytochrome_CBB3 19.05
PF07681DoxX 1.90
PF07978NIPSNAP 1.90
PF03597FixS 1.90
PF00296Bac_luciferase 0.95
PF01551Peptidase_M23 0.95
PF01594AI-2E_transport 0.95
PF02803Thiolase_C 0.95
PF08020DUF1706 0.95
PF00355Rieske 0.95
PF00115COX1 0.95
PF16327CcmF_C 0.95
PF01636APH 0.95
PF13439Glyco_transf_4 0.95
PF01523PmbA_TldD 0.95
PF04392ABC_sub_bind 0.95
PF00912Transgly 0.95
PF12831FAD_oxidored 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 1.90
COG3197Cytochrome oxidase maturation protein, CcoS/FixS familyPosttranslational modification, protein turnover, chaperones [O] 1.90
COG4270Uncharacterized membrane proteinFunction unknown [S] 1.90
COG0183Acetyl-CoA acetyltransferaseLipid transport and metabolism [I] 0.95
COG0312Zn-dependent protease PmbA/TldA or its inactivated homologGeneral function prediction only [R] 0.95
COG0628Predicted PurR-regulated permease PerMGeneral function prediction only [R] 0.95
COG0744Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidaseCell wall/membrane/envelope biogenesis [M] 0.95
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.95
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.95
COG4283Uncharacterized conserved protein DfsB/IRC4, DUF1706 (PF08020) domainGeneral function prediction only [R] 0.95
COG4953Membrane carboxypeptidase/penicillin-binding protein PbpCCell wall/membrane/envelope biogenesis [M] 0.95
COG5009Membrane carboxypeptidase/penicillin-binding proteinCell wall/membrane/envelope biogenesis [M] 0.95

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.14 %
UnclassifiedrootN/A2.86 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005543|Ga0070672_101592680All Organisms → cellular organisms → Bacteria → Proteobacteria586Open in IMG/M
3300005552|Ga0066701_10344540All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium923Open in IMG/M
3300005556|Ga0066707_10687647All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium643Open in IMG/M
3300005713|Ga0066905_100303585All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1255Open in IMG/M
3300005764|Ga0066903_101413281All Organisms → cellular organisms → Bacteria → Proteobacteria1308Open in IMG/M
3300005764|Ga0066903_101665946All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia pickettii1213Open in IMG/M
3300006031|Ga0066651_10518557All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300006049|Ga0075417_10206786All Organisms → cellular organisms → Bacteria931Open in IMG/M
3300006049|Ga0075417_10752203All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300006796|Ga0066665_10570538All Organisms → cellular organisms → Bacteria → Proteobacteria916Open in IMG/M
3300006845|Ga0075421_100024318All Organisms → cellular organisms → Bacteria → Proteobacteria7633Open in IMG/M
3300006845|Ga0075421_100031827All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia pickettii6678Open in IMG/M
3300006845|Ga0075421_100342872All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia pickettii1807Open in IMG/M
3300006845|Ga0075421_100809533All Organisms → cellular organisms → Bacteria → Proteobacteria1078Open in IMG/M
3300006865|Ga0073934_10000304All Organisms → cellular organisms → Bacteria145770Open in IMG/M
3300006865|Ga0073934_10004915All Organisms → cellular organisms → Bacteria → Proteobacteria21489Open in IMG/M
3300007004|Ga0079218_11846993All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300009012|Ga0066710_100064311All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4658Open in IMG/M
3300009012|Ga0066710_100588376All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1687Open in IMG/M
3300009038|Ga0099829_10455404All Organisms → cellular organisms → Bacteria → Proteobacteria1060Open in IMG/M
3300009088|Ga0099830_11225947All Organisms → cellular organisms → Bacteria623Open in IMG/M
3300009089|Ga0099828_10651199All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium947Open in IMG/M
3300009137|Ga0066709_100219773All Organisms → cellular organisms → Bacteria2515Open in IMG/M
3300009147|Ga0114129_10002110All Organisms → cellular organisms → Bacteria27384Open in IMG/M
3300009157|Ga0105092_10009579All Organisms → cellular organisms → Bacteria → Proteobacteria5077Open in IMG/M
3300009157|Ga0105092_10693732All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300009777|Ga0105164_10295014All Organisms → cellular organisms → Bacteria810Open in IMG/M
3300009807|Ga0105061_1083700All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300009807|Ga0105061_1089780All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300010043|Ga0126380_11069328Not Available685Open in IMG/M
3300010304|Ga0134088_10337727All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300010362|Ga0126377_11681033All Organisms → cellular organisms → Bacteria710Open in IMG/M
3300012081|Ga0154003_1068783All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300012096|Ga0137389_10129321All Organisms → cellular organisms → Bacteria → Proteobacteria2045Open in IMG/M
3300012096|Ga0137389_11493862All Organisms → cellular organisms → Bacteria571Open in IMG/M
3300012202|Ga0137363_11163415All Organisms → cellular organisms → Bacteria656Open in IMG/M
3300012202|Ga0137363_11412919All Organisms → cellular organisms → Bacteria → Proteobacteria586Open in IMG/M
3300012203|Ga0137399_10070402All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria2621Open in IMG/M
3300012204|Ga0137374_10010873All Organisms → cellular organisms → Bacteria10690Open in IMG/M
3300012204|Ga0137374_10046489All Organisms → cellular organisms → Bacteria → Proteobacteria4520Open in IMG/M
3300012204|Ga0137374_10053525All Organisms → cellular organisms → Bacteria4128Open in IMG/M
3300012204|Ga0137374_10135657All Organisms → cellular organisms → Bacteria → Proteobacteria2231Open in IMG/M
3300012206|Ga0137380_10185950All Organisms → cellular organisms → Bacteria1888Open in IMG/M
3300012207|Ga0137381_11542078All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300012350|Ga0137372_10154138All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1874Open in IMG/M
3300012351|Ga0137386_10075347All Organisms → cellular organisms → Bacteria2359Open in IMG/M
3300012355|Ga0137369_10237733All Organisms → cellular organisms → Bacteria → Proteobacteria1385Open in IMG/M
3300012355|Ga0137369_10320626All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1142Open in IMG/M
3300012357|Ga0137384_11221632All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium597Open in IMG/M
3300012358|Ga0137368_10186778All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1488Open in IMG/M
3300012360|Ga0137375_10018485All Organisms → cellular organisms → Bacteria → Proteobacteria8121Open in IMG/M
3300012360|Ga0137375_10246151All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1654Open in IMG/M
3300012360|Ga0137375_10765818All Organisms → cellular organisms → Bacteria780Open in IMG/M
3300012360|Ga0137375_11166248All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa roseopersicina592Open in IMG/M
3300012362|Ga0137361_10133282All Organisms → cellular organisms → Bacteria → Proteobacteria2202Open in IMG/M
3300012582|Ga0137358_10021446All Organisms → cellular organisms → Bacteria → Proteobacteria4167Open in IMG/M
3300012929|Ga0137404_10156944All Organisms → cellular organisms → Bacteria → Proteobacteria1897Open in IMG/M
3300012976|Ga0134076_10516829All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300014259|Ga0075311_1087169All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium652Open in IMG/M
3300014318|Ga0075351_1087814All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300014885|Ga0180063_1086253All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium945Open in IMG/M
3300015259|Ga0180085_1079130All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium958Open in IMG/M
3300015359|Ga0134085_10092703All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1248Open in IMG/M
3300017997|Ga0184610_1097830All Organisms → cellular organisms → Bacteria928Open in IMG/M
3300018084|Ga0184629_10296790All Organisms → cellular organisms → Bacteria850Open in IMG/M
3300018422|Ga0190265_10038285All Organisms → cellular organisms → Bacteria → Proteobacteria4063Open in IMG/M
3300018433|Ga0066667_11283148All Organisms → cellular organisms → Bacteria639Open in IMG/M
3300018468|Ga0066662_10994500All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium830Open in IMG/M
3300019360|Ga0187894_10197135All Organisms → cellular organisms → Bacteria986Open in IMG/M
3300019360|Ga0187894_10198744All Organisms → cellular organisms → Bacteria980Open in IMG/M
3300019377|Ga0190264_11576287All Organisms → cellular organisms → Bacteria → Proteobacteria576Open in IMG/M
3300019458|Ga0187892_10001051All Organisms → cellular organisms → Bacteria66770Open in IMG/M
3300019458|Ga0187892_10010821All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria11414Open in IMG/M
3300019458|Ga0187892_10329320All Organisms → cellular organisms → Bacteria750Open in IMG/M
3300020063|Ga0180118_1306130All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria710Open in IMG/M
3300025310|Ga0209172_10003881All Organisms → cellular organisms → Bacteria → Proteobacteria21565Open in IMG/M
3300025313|Ga0209431_10879716All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium644Open in IMG/M
3300025912|Ga0207707_10587074All Organisms → cellular organisms → Bacteria944Open in IMG/M
3300025922|Ga0207646_11317497All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300026535|Ga0256867_10000455All Organisms → cellular organisms → Bacteria → Proteobacteria16224Open in IMG/M
3300027384|Ga0209854_1095078Not Available532Open in IMG/M
3300027650|Ga0256866_1177363All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium576Open in IMG/M
3300027695|Ga0209966_1041840All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium957Open in IMG/M
3300027835|Ga0209515_10008910All Organisms → cellular organisms → Bacteria11563Open in IMG/M
3300027873|Ga0209814_10061582All Organisms → cellular organisms → Bacteria1571Open in IMG/M
3300027909|Ga0209382_10000563All Organisms → cellular organisms → Bacteria → Proteobacteria61245Open in IMG/M
3300027909|Ga0209382_10962610All Organisms → cellular organisms → Bacteria893Open in IMG/M
3300027909|Ga0209382_10986472All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium879Open in IMG/M
3300027909|Ga0209382_12295456All Organisms → cellular organisms → Bacteria → Proteobacteria507Open in IMG/M
3300028589|Ga0247818_10868331All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300028792|Ga0307504_10073361All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1033Open in IMG/M
3300030336|Ga0247826_10414336All Organisms → cellular organisms → Bacteria → Proteobacteria999Open in IMG/M
(restricted) 3300031150|Ga0255311_1130914All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300031184|Ga0307499_10283835All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300031548|Ga0307408_100014397All Organisms → cellular organisms → Bacteria → Proteobacteria5254Open in IMG/M
3300031548|Ga0307408_100068467All Organisms → cellular organisms → Bacteria → Proteobacteria2614Open in IMG/M
3300031548|Ga0307408_101431979Not Available651Open in IMG/M
3300031820|Ga0307473_10040181All Organisms → cellular organisms → Bacteria2128Open in IMG/M
3300031892|Ga0310893_10417456All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300031949|Ga0214473_12126671All Organisms → cellular organisms → Bacteria543Open in IMG/M
3300032005|Ga0307411_10083465All Organisms → cellular organisms → Bacteria2207Open in IMG/M
3300033417|Ga0214471_10161081All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae1849Open in IMG/M
3300033417|Ga0214471_10695607All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300033551|Ga0247830_10517935All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium939Open in IMG/M
3300034176|Ga0364931_0093873All Organisms → cellular organisms → Bacteria945Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil25.71%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere11.43%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.71%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.81%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere3.81%
Hot Spring SedimentEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment2.86%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil2.86%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.86%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand2.86%
Bio-OozeEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze2.86%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.90%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.90%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.90%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.90%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.90%
Microbial Mat On RocksEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks1.90%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.95%
WastewaterEnvironmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater0.95%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.95%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.95%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.95%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.95%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.95%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.95%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.95%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.95%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.95%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.95%
Attine Ant Fungus GardensHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens0.95%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006865Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaGEnvironmentalOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009777Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking waterEnvironmentalOpen in IMG/M
3300009807Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300012081Attine ant fungus gardens microbial communities from Florida, USA - TSFL087 MetaGHost-AssociatedOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300014259Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1EnvironmentalOpen in IMG/M
3300014318Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rdEnvironmentalOpen in IMG/M
3300014885Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10DEnvironmentalOpen in IMG/M
3300015259Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10DEnvironmentalOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019360White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaGEnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300019458Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaGEnvironmentalOpen in IMG/M
3300020063Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025310Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025313Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)EnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026535Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)EnvironmentalOpen in IMG/M
3300027384Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300027650Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeqEnvironmentalOpen in IMG/M
3300027695Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027835Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028589Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031184Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_SEnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031892Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2EnvironmentalOpen in IMG/M
3300031949Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197EnvironmentalOpen in IMG/M
3300032005Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1Host-AssociatedOpen in IMG/M
3300033417Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M
3300034176Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ga0070672_10159268023300005543Miscanthus RhizosphereMTGVRLLRALALVNLLVLVGDILYNVFGGLLPMLQR*
Ga0066701_1034454023300005552SoilMRAVRLLYALALANLLILLSDVLYNVLGGLLPLMR*
Ga0066707_1068764733300005556SoilRPGACAMMAVRLLYALALLNLLVLLSDALYNVLGGLLPLGH*
Ga0066905_10030358543300005713Tropical Forest SoilMSGVRLIYALAIVNLVMLLADVLYNVLGSLLTMGP*
Ga0066903_10141328133300005764Tropical Forest SoilMTGVRLLLALALLNVLLLLSDVLYNVLGGLVPLLR*
Ga0066903_10166594643300005764Tropical Forest SoilMSGVRLLHALALLNLLLLLSDVLYNVLGGLLPLLRQ*
Ga0066651_1051855713300006031SoilVGGPRPGAGSMMALRVLYALALLNLLVLLSDALYNVLGGLLPLGH*
Ga0075417_1020678633300006049Populus RhizosphereMTGIRLIRALALANLLILLGDILYNVFGGLLPMLK*
Ga0075417_1075220323300006049Populus RhizosphereMTGVRLLYALAIVNLLILASDVLYNVLSGLWPMLR*
Ga0066665_1057053843300006796SoilMMAVRLLYALALLNLLVLLSDALYNVLGGLLPLGH*
Ga0075421_10002431873300006845Populus RhizosphereMMAVRLVLALALLNLLILLGDALYNVFGGLGPLLR*
Ga0075421_10003182753300006845Populus RhizosphereMTGVRLLRALALVNLLILLGDILYNVLGGLLPMLR*
Ga0075421_10034287243300006845Populus RhizosphereMIAVRLLLALALLNLLILFGDALYNVFGGFAPLLR*
Ga0075421_10080953333300006845Populus RhizosphereMTGVRLLRVLALANLLILLGDILYNIFGALLPMTR*
Ga0073934_10000304483300006865Hot Spring SedimentMSGIRLLWALSIVNLLVLLGDVLFNVLGVLLGAE*
Ga0073934_10004915223300006865Hot Spring SedimentMTGVRLLWALSLVNLAILVADVLYNVLGGLLAAMP*
Ga0079218_1184699343300007004Agricultural SoilMTDVRLLRLVAVVNLLILAADIVYNVLGGLLPMLR*
Ga0066710_10006431163300009012Grasslands SoilMRAVRLLYALALANLLILLSDVLYNVLGGFLPLMR
Ga0066710_10058837633300009012Grasslands SoilMMAVRLLYALALLNLLVLLTDALYNVFGGLLSRVH
Ga0099829_1045540433300009038Vadose Zone SoilMMAVRLLYALALLNLLVLLSDALYNVLGGLLSLVH*
Ga0099830_1122594733300009088Vadose Zone SoilMIAVRLLYALALLNLLLLLSDALYNVAGALLAAAR*
Ga0099828_1065119933300009089Vadose Zone SoilRPGVGSMMAVRLLYALALLNLLVLLSDALYNVLGGFLPLGR*
Ga0066709_10021977343300009137Grasslands SoilMMAVRLLYALALLNLLVLLTDALYNVFGGLLSRVH*
Ga0114129_1000211053300009147Populus RhizosphereMTAVRLVLALALLNLLILVGDALYNVFGGFAPLLR*
Ga0105092_1000957963300009157Freshwater SedimentMTGIRLLRALAVANLLVLLGDILYNVFGALLPMVR*
Ga0105092_1069373223300009157Freshwater SedimentMAVRLLLTLALLNLAILVGDALYNVFGGFAPLLR*
Ga0105164_1029501433300009777WastewaterMTAVRVLYALAVLNLVVLLAEALYNLVGTVLPAAR*
Ga0105061_108370023300009807Groundwater SandVTTVRIFAALALLNLLILLGDILYNVLGGLVPLIR*
Ga0105061_108978023300009807Groundwater SandMALRLLYALALLNLAILLIDGLYNVLGGLWPLLR*
Ga0126380_1106932833300010043Tropical Forest SoilMMVRLLYVLALLNLVILLIDALYNVLGGLWPLLG*
Ga0134088_1033772733300010304Grasslands SoilMMAVRLLYALALLNLLVLLSDALYNVLGGLLSLAH*
Ga0126377_1168103313300010362Tropical Forest SoilMMVRLLYVLALLNLVILLIDALYNVLGGLWPLLR*
Ga0154003_106878323300012081Attine Ant Fungus GardensMIGVRLLYALALINLAVLLGDVLYNVLGVVTAGR*
Ga0137389_1012932133300012096Vadose Zone SoilMMAVRLLYALAVLNLLVLLSDALYNVLGGFLPLGR*
Ga0137389_1149386233300012096Vadose Zone SoilMAIRLLSTLALLNLLVLLSDVLYNVLGGLVPLLRH*
Ga0137363_1116341533300012202Vadose Zone SoilMMAVRLLYALAVLNLLVLLSDALYNVLGGVLPLGH*
Ga0137363_1141291913300012202Vadose Zone SoilMMAVRLLYALAVLNLLVLLSDALYNVLGGLLPLGH*
Ga0137399_1007040233300012203Vadose Zone SoilVNGVRLLYVLAIVNLLVLLGDVLYNVLGGLLTLAR*
Ga0137374_1001087383300012204Vadose Zone SoilMAVRLLRALALLNLLFLLSDALYNVLGGLVPLIR*
Ga0137374_1004648953300012204Vadose Zone SoilMAIRLLYALALVNLLFLLSDALYNVLGGLLPLVRY*
Ga0137374_1005352533300012204Vadose Zone SoilMTGVRLLYILAVLNLLFLLSDALYSVLGGLLPMVR*
Ga0137374_1013565713300012204Vadose Zone SoilMMAARLLYALALLNLLVLLSDALYNVLGGLLPLGH*
Ga0137380_1018595043300012206Vadose Zone SoilMAVRLLYALALLNLLVLLSDALYNILGGLLPLGH*
Ga0137381_1154207833300012207Vadose Zone SoilMMVVRLLYALALLNLLVLLSDALYNVLGGLLPLGH*
Ga0137372_1015413813300012350Vadose Zone SoilMMAVRLLRALALLNLLFLLSDALYNVLGGLVPLIR*
Ga0137386_1007534733300012351Vadose Zone SoilMLAVRLLYALALLNLLVLLTDALYNVFGGLLSRVH*
Ga0137369_1023773343300012355Vadose Zone SoilMRAIRLLYALALANLLILLSDVLYNVLGGLLPLVR*
Ga0137369_1032062623300012355Vadose Zone SoilMRVARLLYALALANLLILLSDVLYNVLGGLLPLVR*
Ga0137384_1122163233300012357Vadose Zone SoilCSMMAARLLYALALLNLLVLLSDALYNVLGGLLPLGH*
Ga0137368_1018677823300012358Vadose Zone SoilMRAIWLLYALALANLLILLSDVLYNVLGGLLPLVR*
Ga0137375_1001848553300012360Vadose Zone SoilMMAIRLLYALALVNLLFLLSDALYNVLGGLLPLVRY*
Ga0137375_1024615143300012360Vadose Zone SoilMAIRLLYALALLNLLVLLSDALYNVLGGLLPLGH*
Ga0137375_1076581833300012360Vadose Zone SoilMAVRLLYVLALLNLLFLVSDVLYNVLGGLLPLVR*
Ga0137375_1116624813300012360Vadose Zone SoilMMAARLLYALALLNLLVLLSDALYNVLGGLRPLGH*
Ga0137361_1013328243300012362Vadose Zone SoilMMAVRLLYALAVLNLLVLLSDALYNVLGGFLPLGH*
Ga0137358_1002144653300012582Vadose Zone SoilMRAVRLLYALALANLLILLSDVLYNVLGGLLPLVR*
Ga0137404_1015694443300012929Vadose Zone SoilMMAVRLLYALAVLNLLVLLSDALYNVLGGLLSLVH*
Ga0134076_1051682933300012976Grasslands SoilMMAVRLLYALALLNLLVLLSAALYNVLGGLLSLAH*
Ga0075311_108716923300014259Natural And Restored WetlandsMTGIRLLRALAVANLLVLLGDILYNVFGGLLPMVR*
Ga0075351_108781433300014318Natural And Restored WetlandsMTAVRLVLALAVLNLVVLAADALYNVFGGLVSLLW*
Ga0180063_108625333300014885SoilMTGVRLLYILAVLNLLILLSDALYNVLGGLLPMVR*
Ga0180085_107913043300015259SoilMTGVRLLYILAVLNLLILLSDALYNVLGGLVPMVR*
Ga0134085_1009270323300015359Grasslands SoilMMAVRLLYALALLNLLVLLSDALYNVLGGLLFLAH*
Ga0184610_109783033300017997Groundwater SedimentMIAVRLVLVLALLNLLILLGDALYNVLGGFGPLLR
Ga0184629_1029679043300018084Groundwater SedimentMTGVRLLYILAVLNLLILLSDALYNVLGGLLPMVR
Ga0190265_1003828543300018422SoilMTGIRLLRALALANLLVLLGDILYNIFGGLLPMIR
Ga0066667_1128314833300018433Grasslands SoilMMAVRLLYALALLNLLVLLSDALYNVLGGLLPLGH
Ga0066662_1099450013300018468Grasslands SoilMMAVRLLYALAVLNLLVLLSDALYNVLGGFLPLGH
Ga0187894_1019713523300019360Microbial Mat On RocksMTAIRLLQALAVLNLLLLLGDALYNVLGGLLPFVR
Ga0187894_1019874423300019360Microbial Mat On RocksMTGIRLLRVLALVNLLILIGDVLYNVFGGLLPMVR
Ga0190264_1157628733300019377SoilMTGIRLLRVLALANLLILLGDILYNIFGALLPMTR
Ga0187892_10001051163300019458Bio-OozeVTALRLLYALALLNLLILLVDGLYNVLGGLLPLLR
Ga0187892_10010821103300019458Bio-OozeVSPLRLLYALALLNLAILLIDMLYNVLGGLVPLLR
Ga0187892_1032932033300019458Bio-OozeMIAVRLILALALLNLVILASDLLYNLVGGLLPLVR
Ga0180118_130613043300020063Groundwater SedimentMTGVRLLYALALANLLFLASDVLYNVLAGLLPLIR
Ga0209172_1000388143300025310Hot Spring SedimentMTGVRLLWALSLVNLAILVADVLYNVLGGLLAAMP
Ga0209431_1087971623300025313SoilMTGIRLLRALALVNLLILLADILYNVFGGLLPMVQ
Ga0207707_1058707433300025912Corn RhizosphereMTGVRLLRALALVNLLVLVGDILYNVFGGLLPMLQR
Ga0207646_1131749723300025922Corn, Switchgrass And Miscanthus RhizosphereMMAVRLLYALALLNLLVLLSDALYNVLGGLLSLVH
Ga0256867_10000455123300026535SoilMTGIRLLRALAVANLLVLLGDILYNVFGALLPMVR
Ga0209854_109507813300027384Groundwater SandGPRPGAGPMTAVRILYVLAVLNLLFLLSDALYNVLGGLLPMVR
Ga0256866_117736333300027650SoilMRGIRLLRALAIANLLVLLADVLYNVLGGLLPMVR
Ga0209966_104184043300027695Arabidopsis Thaliana RhizosphereMTGVRLLRALALVNLLILLGDILYNVLGGLLPMLR
Ga0209515_1000891043300027835GroundwaterMTAVRVLYALAVLNLVVLLAEALYNLVGTVLPAGR
Ga0209814_1006158223300027873Populus RhizosphereMTAVRLVLALALLNLLILVGDALYNVFGGFAPLLR
Ga0209382_10000563373300027909Populus RhizosphereMTGIRLIRALALANLLILLGDILYNVFGGLLPMLK
Ga0209382_1096261033300027909Populus RhizosphereMIAVRLLLALALLNLLILFGDALYNVFGGFAPLLR
Ga0209382_1098647233300027909Populus RhizosphereMTGVRLLRVLALANLLILLGDILYNIFGALLPMTR
Ga0209382_1229545613300027909Populus RhizosphereMMAVRLVLALALLNLLILLGDALYNVFGGLGPLLR
Ga0247818_1086833123300028589SoilMTAVRVMLALAVLNLLILLGDALYNVLGGLAFFPR
Ga0307504_1007336143300028792SoilMTGVRLLYILAVLNLLFLLSDVLYNVLGGLLPMVR
Ga0247826_1041433623300030336SoilMIAVRLLLVLALVNLLILIGDALYNVLGGFGPLLR
(restricted) Ga0255311_113091433300031150Sandy SoilMMAVRLLYALALLNLVLLLSDVLYNVLGGLLPLVRD
Ga0307499_1028383533300031184SoilMTVVRLLLALALLNLLILVSDALYNVFGGLVPLLR
Ga0307408_10001439733300031548RhizosphereMTGVRLLRLVAVVNLLILAADIVYNVLGGLLPMLW
Ga0307408_10006846723300031548RhizosphereMRAIRLLYALALANLLILLSDVLYNVLGGLLPLVR
Ga0307408_10143197933300031548RhizosphereMTGIRLLRALALVNLLVLLGDILYNVLGGLLPLVW
Ga0307473_1004018133300031820Hardwood Forest SoilMSGARLIYVLALLNLLILLGDVLYNVLGGLVEMAR
Ga0310893_1041745633300031892SoilGPGAMTGVRLLRALALVNLLVLVGDILYNVFGGLLPMLQR
Ga0214473_1212667133300031949SoilMTAVRVLYALAVLNLVVLLAEALYNLAGTVLPAAR
Ga0307411_1008346513300032005RhizosphereAMTGIRLLRALALVNLLVLLGDILYNVLGGLLPLVW
Ga0214471_1016108133300033417SoilMMAVRLVLALALLNLLILVGDALYNVLGGFVPLLR
Ga0214471_1069560743300033417SoilMTGVRLLYILAVLNLLFLLSDALYNVLGGLLPMVR
Ga0247830_1051793533300033551SoilMTGIRLLRVLALANLLILLGDILYNILGALLPMTR
Ga0364931_0093873_520_6273300034176SedimentMTAVRLVLMLAVLNLVLLAADALYNVFGGLLSLLR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.