Metagenome Family F095190

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095190
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	63 residues
Representative Sequence	LKAYLLTTGIIFGLFAAGHVFELVFEWRSPASDPWFTFGVALIVLVSGALSVWAFRLLKS
Number of Associated Samples	75
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.14 %
% of genes near scaffold ends (potentially truncated)	34.29 %
% of genes from short scaffolds (< 2000 bps)	70.48 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.143 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (38.095 % of family members)
Environment Ontology (ENVO)	Unclassified (66.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.619 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.23% β-sheet: 0.00% Coil/Unstructured: 39.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF14534	DUF4440	13.33
PF02517	Rce1-like	7.62
PF03992	ABM	6.67
PF07007	LprI	5.71
PF13302	Acetyltransf_3	3.81
PF09118	GO-like_E_set	3.81
PF00717	Peptidase_S24	3.81
PF03713	DUF305	2.86
PF00484	Pro_CA	2.86
PF08818	DUF1801	1.90
PF02894	GFO_IDH_MocA_C	1.90
PF10502	Peptidase_S26	1.90
PF13474	SnoaL_3	1.90
PF13432	TPR_16	1.90
PF00561	Abhydrolase_1	0.95
PF01906	YbjQ_1	0.95
PF03747	ADP_ribosyl_GH	0.95
PF07311	Dodecin	0.95
PF13505	OMP_b-brl	0.95
PF01872	RibD_C	0.95
PF01261	AP_endonuc_2	0.95
PF01212	Beta_elim_lyase	0.95
PF00144	Beta-lactamase	0.95
PF00389	2-Hacid_dh	0.95
PF04191	PEMT	0.95
PF09900	DUF2127	0.95
PF03167	UDG	0.95
PF13630	SdpI	0.95
PF00583	Acetyltransf_1	0.95
PF01436	NHL	0.95
PF13561	adh_short_C2	0.95
PF00106	adh_short	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	7.62
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	7.62
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	5.71
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	2.86
COG3544	Uncharacterized conserved protein, DUF305 family	Function unknown [S]	2.86
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	1.90
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	1.90
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	1.90
COG0673	Predicted dehydrogenase	General function prediction only [R]	1.90
COG1167	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain	Transcription [K]	1.90
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.95
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.95
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.95
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.95
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.95
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.95
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.95
COG3033	Tryptophanase	Amino acid transport and metabolism [E]	0.95
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	0.95
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.95
COG4992	Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase	Amino acid transport and metabolism [E]	0.95
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.95
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.95
COG1397	ADP-ribosylglycohydrolase	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.95
COG1003	Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	Amino acid transport and metabolism [E]	0.95
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.95
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.95
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.95
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.95
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.95
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.95
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.95
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.95
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	0.95
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.14 %
Unclassified	root	N/A	2.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.14 %
Unclassified	root	N/A	2.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.14 %
Unclassified	root	N/A	2.86 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	19.05 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.76 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.86 %
Unclassified	root	N/A	2.86 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.95 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	19.05 %
Unclassified	root	N/A	2.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.90 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.95 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	10.48 %
Unclassified	root	N/A	2.86 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	1.90 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.90 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.95 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.95 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	10.48 %
Unclassified	root	N/A	2.86 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.90 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.95 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.95 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.95 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.95 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	10.48 %
Unclassified	root	N/A	2.86 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1.90 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.95 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.95 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.95 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.95 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	10.48 %
Unclassified	root	N/A	2.86 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	1.90 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.95 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.95 %
Acrocarpospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora	0.95 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.95 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	10.48 %
Unclassified	root	N/A	2.86 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1.90 %
unclassified Actinoplanes	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes	0.95 %
Acrocarpospora corrugata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora corrugata	0.95 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.95 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.95 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	10.48 %
Unclassified	root	N/A	2.86 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1.90 %
Actinoplanes sp. SE50/110	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. SE50/110	0.95 %
Acrocarpospora corrugata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora corrugata	0.95 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.95 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.95 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002560\|JGI25383J37093_10002057	All Organisms → cellular organisms → Bacteria	5783	Open in IMG/M
3300002560\|JGI25383J37093_10077014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1020	Open in IMG/M
3300002560\|JGI25383J37093_10143575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. SE50/110	639	Open in IMG/M
3300002560\|JGI25383J37093_10150746	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300002561\|JGI25384J37096_10241994	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	526	Open in IMG/M
3300002562\|JGI25382J37095_10191388	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	623	Open in IMG/M
3300002908\|JGI25382J43887_10334339	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	647	Open in IMG/M
3300002908\|JGI25382J43887_10462944	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300004778\|Ga0062383_10014225	All Organisms → cellular organisms → Bacteria → Proteobacteria	2693	Open in IMG/M
3300005166\|Ga0066674_10025762	All Organisms → cellular organisms → Bacteria	2573	Open in IMG/M
3300005166\|Ga0066674_10375718	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300005167\|Ga0066672_10020789	All Organisms → cellular organisms → Bacteria	3430	Open in IMG/M
3300005172\|Ga0066683_10093374	All Organisms → cellular organisms → Bacteria	1820	Open in IMG/M
3300005172\|Ga0066683_10270706	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300005172\|Ga0066683_10386290	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300005172\|Ga0066683_10607911	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300005174\|Ga0066680_10003570	All Organisms → cellular organisms → Bacteria	7139	Open in IMG/M
3300005174\|Ga0066680_10253144	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1119	Open in IMG/M
3300005175\|Ga0066673_10116075	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300005178\|Ga0066688_10429987	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300005179\|Ga0066684_10300255	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300005181\|Ga0066678_10020353	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3463	Open in IMG/M
3300005184\|Ga0066671_10136799	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300005186\|Ga0066676_10285217	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300005186\|Ga0066676_10337354	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1005	Open in IMG/M
3300005187\|Ga0066675_10118308	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300005450\|Ga0066682_10011507	All Organisms → cellular organisms → Bacteria	4693	Open in IMG/M
3300005467\|Ga0070706_101329762	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300005468\|Ga0070707_100204969	All Organisms → cellular organisms → Bacteria	1922	Open in IMG/M
3300005471\|Ga0070698_100492229	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300005553\|Ga0066695_10024214	All Organisms → cellular organisms → Bacteria	3438	Open in IMG/M
3300005553\|Ga0066695_10094719	All Organisms → cellular organisms → Bacteria	1826	Open in IMG/M
3300005553\|Ga0066695_10218877	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300005554\|Ga0066661_10369347	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300005556\|Ga0066707_10071730	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2067	Open in IMG/M
3300005558\|Ga0066698_10280792	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300005586\|Ga0066691_10178875	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300006034\|Ga0066656_10942037	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	553	Open in IMG/M
3300006797\|Ga0066659_11483293	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300006800\|Ga0066660_10675772	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300009012\|Ga0066710_101241853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1155	Open in IMG/M
3300009012\|Ga0066710_101711890	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300009089\|Ga0099828_10292370	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1465	Open in IMG/M
3300009090\|Ga0099827_10067541	All Organisms → cellular organisms → Bacteria	2748	Open in IMG/M
3300009137\|Ga0066709_104574454	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	506	Open in IMG/M
3300010335\|Ga0134063_10171644	Not Available	1012	Open in IMG/M
3300012198\|Ga0137364_10058558	All Organisms → cellular organisms → Bacteria	2594	Open in IMG/M
3300012199\|Ga0137383_10495580	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300012200\|Ga0137382_10791570	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300012201\|Ga0137365_10060499	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2859	Open in IMG/M
3300012204\|Ga0137374_10001707	All Organisms → cellular organisms → Bacteria	25240	Open in IMG/M
3300012206\|Ga0137380_10009068	All Organisms → cellular organisms → Bacteria	9000	Open in IMG/M
3300012206\|Ga0137380_10195143	All Organisms → cellular organisms → Bacteria	1838	Open in IMG/M
3300012206\|Ga0137380_10198849	All Organisms → cellular organisms → Bacteria	1818	Open in IMG/M
3300012206\|Ga0137380_10634794	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300012208\|Ga0137376_10029349	All Organisms → cellular organisms → Bacteria	4349	Open in IMG/M
3300012209\|Ga0137379_10446522	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300012209\|Ga0137379_11156873	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	680	Open in IMG/M
3300012209\|Ga0137379_11654251	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300012210\|Ga0137378_11803391	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	516	Open in IMG/M
3300012349\|Ga0137387_10173674	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300012349\|Ga0137387_11147399	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300012351\|Ga0137386_10026553	All Organisms → cellular organisms → Bacteria	3929	Open in IMG/M
3300012353\|Ga0137367_10559001	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300012353\|Ga0137367_10617559	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300012354\|Ga0137366_10060808	All Organisms → cellular organisms → Bacteria	2886	Open in IMG/M
3300012356\|Ga0137371_10878308	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	682	Open in IMG/M
3300012359\|Ga0137385_10321081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1329	Open in IMG/M
3300012359\|Ga0137385_11228531	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300012923\|Ga0137359_10027870	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4833	Open in IMG/M
3300012944\|Ga0137410_10554698	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300012976\|Ga0134076_10183676	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	871	Open in IMG/M
3300015359\|Ga0134085_10065803	All Organisms → cellular organisms → Bacteria	1468	Open in IMG/M
3300017654\|Ga0134069_1158459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	759	Open in IMG/M
3300018431\|Ga0066655_10308367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora corrugata	1032	Open in IMG/M
3300018433\|Ga0066667_11366338	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	621	Open in IMG/M
3300018468\|Ga0066662_10107003	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1999	Open in IMG/M
3300018468\|Ga0066662_10302868	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1344	Open in IMG/M
3300018468\|Ga0066662_10373749	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300018468\|Ga0066662_10375809	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300018482\|Ga0066669_10081226	All Organisms → cellular organisms → Bacteria	2183	Open in IMG/M
3300018482\|Ga0066669_10253109	Not Available	1394	Open in IMG/M
3300018482\|Ga0066669_10804599	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300018482\|Ga0066669_12287249	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300026277\|Ga0209350_1100770	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	705	Open in IMG/M
3300026296\|Ga0209235_1000644	All Organisms → cellular organisms → Bacteria	17914	Open in IMG/M
3300026298\|Ga0209236_1023303	All Organisms → cellular organisms → Bacteria	3425	Open in IMG/M
3300026306\|Ga0209468_1061381	All Organisms → cellular organisms → Bacteria	1266	Open in IMG/M
3300026309\|Ga0209055_1011113	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4728	Open in IMG/M
3300026313\|Ga0209761_1089396	All Organisms → cellular organisms → Bacteria	1570	Open in IMG/M
3300026313\|Ga0209761_1188384	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300026324\|Ga0209470_1011728	All Organisms → cellular organisms → Bacteria	5163	Open in IMG/M
3300026324\|Ga0209470_1016493	All Organisms → cellular organisms → Bacteria → Proteobacteria	4139	Open in IMG/M
3300026326\|Ga0209801_1033783	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2405	Open in IMG/M
3300026327\|Ga0209266_1000297	All Organisms → cellular organisms → Bacteria	41215	Open in IMG/M
3300026327\|Ga0209266_1047614	All Organisms → cellular organisms → Bacteria	2131	Open in IMG/M
3300026329\|Ga0209375_1114827	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300026334\|Ga0209377_1133535	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300026342\|Ga0209057_1065434	All Organisms → cellular organisms → Bacteria	1615	Open in IMG/M
3300026343\|Ga0209159_1023402	All Organisms → cellular organisms → Bacteria	3430	Open in IMG/M
3300026548\|Ga0209161_10418872	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300026552\|Ga0209577_10619875	Not Available	638	Open in IMG/M
3300027875\|Ga0209283_10047197	All Organisms → cellular organisms → Bacteria	2733	Open in IMG/M
3300027882\|Ga0209590_10054771	All Organisms → cellular organisms → Bacteria	2239	Open in IMG/M
3300032783\|Ga0335079_10019281	All Organisms → cellular organisms → Bacteria	7809	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.05%
Aquatic	Environmental → Aquatic	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.05%
Freshwater	Environmental → Aquatic → Freshwater	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	94.29%
Loam	Environmental → Terrestrial → Soil → Loam	3.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.95%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	62.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.86%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.95%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	38.10%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.62%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	24.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.86%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25383J37093_100020575	3300002560	Grasslands Soil	VKAYLLTTGTIFGLFAAGHVFELVAEWRPPASDPWFTVGMALIIGVSGALSVWAFRLLKGIGSSPLV*
JGI25383J37093_100770141	3300002560	Grasslands Soil	LRAYLVTTGTIFGLFSAGHLFELIAEWRPPASDPWFMLGMAAIILVSAGLSVWAFRLLKA
JGI25383J37093_101435751	3300002560	Grasslands Soil	LRAYLVTTGTIFGLFSAGHLFELIAEWRPPASDPWFMLGMAAIILVSAGLSVWAFRLLKAAGRAAA*
JGI25383J37093_101507461	3300002560	Grasslands Soil	MLVTGTIFGLFAARHLLELVARWRSPASDPWFMLGMAVIVVVSGGLSVWAFRLL
JGI25384J37096_102419942	3300002561	Grasslands Soil	ELVVEWRPPGSDPWFMVGMALIILVSGALCVWAFRLLKATGRTTQTSLS*
JGI25382J37095_101913882	3300002562	Grasslands Soil	MALKTYLVVTGVIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKSPS*
JGI25382J43887_103343391	3300002908	Grasslands Soil	MALKTYLVVTGVIFALFAAMHVFELVKEWRSPAXDPWFTIGVSLIVIVSGALSVWAFRLLKSPS*
JGI25382J43887_104629441	3300002908	Grasslands Soil	VKRYLVTTGTIFGLFALGHLAELVVEWRPPGSDPWFMVGMALIILVSGALCVWAFRLLKATGRTTQTSLS*
Ga0062383_100142253	3300004778	Wetland Sediment	VKTYLVTTGTLFALFAAGHIFELVVEWRSPASDPWFTVGMVVIIAASGALSIWAFRLLKGTGAAAA*
Ga0066674_100257624	3300005166	Soil	LRAYLVTTGTIFGLFSAGHLFELIAEWRPPASDPWFMLGMAAIILVSAGLSVWAFRLLKGAGRAAA*
Ga0066674_103757182	3300005166	Soil	VKAYLLTTGAIFGLFAAGHIVELIADWRPPASDPWFTIGIGLIIVVSGALCVWAFRLLK
Ga0066672_100207896	3300005167	Soil	VKAYLLTTGTIFGLFSVWHIAELITRWRPPASDPWFIGGVALIAVASGGLSIWAFRLWKAIGGPAA*
Ga0066683_100933742	3300005172	Soil	LKTYLVVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKTPA*
Ga0066683_102707062	3300005172	Soil	VFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKSPS*
Ga0066683_103862901	3300005172	Soil	LKTYLVVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLL
Ga0066683_106079112	3300005172	Soil	VFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKSPA*
Ga0066680_100035705	3300005174	Soil	MLVTGTIFGLFAARHLLELVARWRSPASDPWFMLGMAVIVVVSGGLSVWAFRLLRVNRHRGHQPL*
Ga0066680_102531442	3300005174	Soil	VKAYLLTTGTIFGLFSVWHIAELIMRWRPPASDPWFIGGVALIAVASGGLSIWAFRLWKAIGGPAA*
Ga0066673_101160751	3300005175	Soil	LKTYLVVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKSPS*
Ga0066688_104299872	3300005178	Soil	VKAYLLTTGTIFGLFAAGHVVELIAEWRPPASDPWFVIGISLIIVVSAAFCVWAFRLLETIGPAVNRPSNS*
Ga0066684_103002552	3300005179	Soil	VKAYLLTTGTIFGLFSLGHIVELITRWRSPASDPWFMGGMALIVVLSAALSIWGFRLWMATHGGAA*
Ga0066678_100203536	3300005181	Soil	VKAYLLTTGTIFGLFSVWHIAELIMRWRPPASDPWFIGGVTLIAVASGGLSIWAFRLWKAIGGPAA*
Ga0066671_101367992	3300005184	Soil	VKAYLLTTGTIFGLFAAGHVVELIAEWRPPASDPWFIIGISLIIVVSAAFCVWAFRLLETIGPAVNRPTNS*
Ga0066676_102852172	3300005186	Soil	LKTYLVVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLRSPS*
Ga0066676_103373543	3300005186	Soil	VKTYLLTTGTIFGLFSIGHIVELIAQWRSPASDPWFIGGMALIVVVSGALSIWGFRLWKATGGAAA*
Ga0066675_101183082	3300005187	Soil	VKAYLLTTGTIFGLFAAGHVVELIAEWRPPASDPWFIIGISLIIVVSAAFCVWAFRLLKTIGPAVNRPSNS*
Ga0066682_100115077	3300005450	Soil	LKTYLVVTGSIFALFAAMHIFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKTPA*
Ga0070706_1013297622	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VKAYLLTTGTIFGLFSLWHIAELIMRWRPPASDPWFIGGVALIAVASGGLSIWAFRLWKAIGGPAA*
Ga0070707_1002049693	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VKAYLLTTGTIFGLFSVWHIAELIMRWRPPASDPWFIGGVVLIAVASGGLSIWAFRLWKAIGGPAA*
Ga0070698_1004922291	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LTERADVKAYLLTTGTIFGLFSLWHIAELIMRWRPPASDPWFIGGVVLIAVASGGLSIWAFRLWKAIGGPAA*
Ga0066695_100242141	3300005553	Soil	KTYLVVTGSIFALFAAMHIFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKTPA*
Ga0066695_100947192	3300005553	Soil	VKAYLLTTGAIFGLFAAGHIVELIADWRPPASDPWFTIGIGLIIVVSGALCVWAFRLLKAIGPAAS*
Ga0066695_102188771	3300005553	Soil	KTYLVVTGSIFALFAAMHIFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKSPS*
Ga0066661_103693472	3300005554	Soil	VKRYLVTTGTIFGLFALGHLAELVVEWRPPGSDPWFMVGMALIILVSGALCVWAFR
Ga0066707_100717302	3300005556	Soil	AVGNRLRGQGVKAYLLTTGTIFGLFSLGHIVELITRWRSPASDPWFMGGMALIVVLSAALSIWGFRLWMATHGGAA*
Ga0066698_102807922	3300005558	Soil	VKTYLLTTGTIFGLFSIGHIVELIAGWRSPASDPWFIGGMALIVVVSGALSIWGFRLWKATGGTAA*
Ga0066691_101788753	3300005586	Soil	TRRNGVKRYLVTTGTIFGLFALGHLAELVVEWRPPGSDPWFMVGMALIILVSGALCVWAFRLLKATGRTTQTSLS*
Ga0066656_109420371	3300006034	Soil	IAGWRSPASDPWFIGGMALIVVVSGALSIWGFRLWKATGGAAA*
Ga0066659_114832931	3300006797	Soil	VKKYLLTTGTIFGLFALGHLAELLVEWRPPASDPWFMAGMALIILVSGALCVWAFRLLKATGRTTQTSLS*
Ga0066660_106757721	3300006800	Soil	VKAYLLTTGTIFGLFAAAHVVELIAEWRPPASDPWFVIGISLIIVVSAAFCVWAFRLLETIGPAVNRPTNS*
Ga0066710_1012418534	3300009012	Grasslands Soil	LRAYLVTTGTIFGLFSAGHLFELIAEWRPPASDPWFMLGMAAIILVSAGLSVWAFRLLK
Ga0066710_1017118901	3300009012	Grasslands Soil	LKAYILVTGTIFGLFAARHLLELVARWRSPASDPWFMLGMAVIVVVSGGLSVWAFRLLRVNRHRGHQPL
Ga0099828_102923702	3300009089	Vadose Zone Soil	LKTYLLITGLIFGLFAAWHLFELVSQWRSPASDPWFTLTMALIVVVSGALSFWAFRLLKATGRAAS*
Ga0099827_100675414	3300009090	Vadose Zone Soil	LRAYLVTTGTIFGLFSAGHLFELIAEWRPPVSDPWFMLGMAAIILVSAGLSVWAFRLLKAAGRAAA*
Ga0066709_1045744541	3300009137	Grasslands Soil	LKTYLVVTGSIFALFAAGHLYELVAEWRARSGDPWFTIGVSLIVIVSGALSVWAFRLLKSPS*
Ga0134063_101716441	3300010335	Grasslands Soil	VKAYLLTTGTIFGLFAAGHVVELIAEWRPPASDPWFIIGISLIIVVSAAFCVWAFRLLKAIGPAAVRSAAVPRS*
Ga0137364_100585583	3300012198	Vadose Zone Soil	VKTYLLTTGTIFGLFSIGHIVELIAEWRSPASDPWFIGGMALIVVVSGALSIWGFRLWKATGVAAA*
Ga0137383_104955801	3300012199	Vadose Zone Soil	MALKTYLVVTGVIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKAPS*
Ga0137382_107915701	3300012200	Vadose Zone Soil	LKTYLAVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKSPS*
Ga0137365_100604993	3300012201	Vadose Zone Soil	LKTYLVVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKTSS*
Ga0137374_1000170711	3300012204	Vadose Zone Soil	VNGRTALKTYLVVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKTSS*
Ga0137380_100090689	3300012206	Vadose Zone Soil	LKTYLVVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKSPA*
Ga0137380_101951433	3300012206	Vadose Zone Soil	LKAYLLTTGIIFGLFAAGHVFELVFEWRSPASDPWFTFGVALIVLVSGALSVWAFRLLKSAGRADC*
Ga0137380_101988493	3300012206	Vadose Zone Soil	MTLKTYVMVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLRVPSSP*
Ga0137380_106347942	3300012206	Vadose Zone Soil	VNGRTALKTYLVVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKTPP*
Ga0137376_100293495	3300012208	Vadose Zone Soil	VKTYLLTTGTIFGLFSIGHIVELIAEWRSPASDPWFIGGMALIVVVSGALSIWGFRLWKATGGAAA*
Ga0137379_104465223	3300012209	Vadose Zone Soil	LKAYLLTTGIIFGLFAAGHVFELVFEWRSPASDPWFTFGVALIVLVSGALSVWAFRLLKSAGRADR*
Ga0137379_111568731	3300012209	Vadose Zone Soil	RDVLKAYLLTTGIIFGLFAAGHVFELVFEWRSPASDPWFTFGVALIVLVSGALSVWAFRLLKSAGRADC*
Ga0137379_116542511	3300012209	Vadose Zone Soil	VKAYLLTTGTIFGLFAAGPVVELIAEWRRPASDPSFVIGISLIIVVSAAFSAWAFRLLKTIGPAAPSHS*
Ga0137378_118033911	3300012210	Vadose Zone Soil	GLFSIGHIVELIAEWRSPASDPWFIGGMALIVVVSGALSIWGFRLWKATGVAAA*
Ga0137387_101736744	3300012349	Vadose Zone Soil	HVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKSPA*
Ga0137387_111473992	3300012349	Vadose Zone Soil	ELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKTPP*
Ga0137386_100265533	3300012351	Vadose Zone Soil	LKAYLLTTGIIFGLFAAGHLFELVFEWRSPASDPWFTFGVALIVLVSGALSVWAFRLLKSAGRADR*
Ga0137367_105590011	3300012353	Vadose Zone Soil	YLVVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKTSS*
Ga0137367_106175591	3300012353	Vadose Zone Soil	YLVVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKAPS*
Ga0137366_100608082	3300012354	Vadose Zone Soil	LKTYLLVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKTPA*
Ga0137371_108783082	3300012356	Vadose Zone Soil	VRAYLLTTGTIFGLFAAGHIVELIAEWRPPASDPWFMIGISSIIVISGALGLWAFRLLKATG*
Ga0137385_103210813	3300012359	Vadose Zone Soil	LKAYLLTTGIIFGLFAAGHVFELVFEWRSPASDPWFTFGVALIVLVSGALSVWAFRLLKS
Ga0137385_112285312	3300012359	Vadose Zone Soil	HVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKTPP*
Ga0137359_100278703	3300012923	Vadose Zone Soil	MKPYLVITGTIFALFSVGHVVELAGHWRSPASDPWFTGGVAVIIVVSGALSVWAFRLFRTNG*
Ga0137410_105546982	3300012944	Vadose Zone Soil	VKAYLLTTGTIFGLFAAGHVVELIAEWRPPASDPWFITGISLIIVVSAALCVWAFRLLKAIGPAAISGAPSTLGR*
Ga0134076_101836762	3300012976	Grasslands Soil	VKTYLLTTGTIFGLFSIGHIVELIAQWRSPASDPWFIGGMALIVVVSGALNIWGFRLWKATGGAAA*
Ga0134085_100658031	3300015359	Grasslands Soil	FALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKSPS*
Ga0134069_11584591	3300017654	Grasslands Soil	VRSEDNLRAYLVTTGTIFGLFSAGHLFELIAEWRPPASDPWFMLGMAAIILVSAGLSVWAFRLLKGAGRAAA
Ga0066655_103083672	3300018431	Grasslands Soil	LRAYLVTTGTIFGLFSAGHLFELIAEWRPPASDPWFMLGMAAIILVSAGLSVWAFRLLKGAGRAAA
Ga0066667_113663382	3300018433	Grasslands Soil	LKTYLVVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKSPS
Ga0066662_101070032	3300018468	Grasslands Soil	VKAYLLTTGTIFGLFSVWHIAELIMRWRPPASDPWFIGGVALIAVASGGLSIWAFRLWKAIGGPAA
Ga0066662_103028684	3300018468	Grasslands Soil	LRAYLVTTGTIFGLFSAGHLFELIAEWRPPASDPWFMLGMAAIILVSAGLSVWAFRLLKAAGRAAA
Ga0066662_103737492	3300018468	Grasslands Soil	LKAYMLVTGTIFGLLAARHLLELVARWRSPASDPWFMLGMAVIVVVSGGLSVWAFRLLRVNRHRGHQPL
Ga0066662_103758092	3300018468	Grasslands Soil	VKRYLVTTGTIFGLFALGHLAELVVEWRPPGSDPWFMVGMALIILVSGALCVWAFRLLKATGRTTQTSLS
Ga0066669_100812261	3300018482	Grasslands Soil	GHIVELITRWRSPASDPWFMGGMALIVVLSAALSIWGFRLWMATHGGAA
Ga0066669_102531092	3300018482	Grasslands Soil	VKAYLLTTGTIFGLFAAAPVVELIAEWRPPASDPWFIIGISLIIVVSAAFCVWAFRLLETIGPAVNRPTNS
Ga0066669_108045991	3300018482	Grasslands Soil	VKAYLLTTGAIFGLFAAGHIVELIADWRPPASDPWFTIGIGLIIVVSGALCVWAFRLLKAIGP
Ga0066669_122872491	3300018482	Grasslands Soil	LKTYLVVTGSIFALFAAMHIFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWA
Ga0209350_11007702	3300026277	Grasslands Soil	LRAYLVTTGTIFGLFSAGHLFELIAEWRPPASDPWFMLGMAAIILVSAGLSVWAFRLLKAARRAAA
Ga0209235_100064422	3300026296	Grasslands Soil	VKAYLLTTGTIFGLFAAGHVFELVAEWRPPASDPWFTVGMALIIGVSGALSVWAFRLLKGIGSSPLV
Ga0209236_10233032	3300026298	Grasslands Soil	MLVTGTIFGLFAARHLLELVARWRSPASDPWFMLGMAVIVVVSGGLSVWAFRLLRVNRHRGHQPL
Ga0209468_10613812	3300026306	Soil	LKTYLVVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKTPA
Ga0209055_10111136	3300026309	Soil	VKAYLLTTGTIFGLFSVWHIAELITRWRPPASDPWFIGGVALIAVASGGLSIWAFRLWKAIGGPAA
Ga0209761_10893961	3300026313	Grasslands Soil	IFGLFALGHLAELVVEWRPPGSDPWFMVGMALIILVSGALCVWAFRLLKATGRTTQTSLS
Ga0209761_11883842	3300026313	Grasslands Soil	LKAYMLVTGTIFGLFAARHLLELVARWRSPASDPWFMLGMAVIVVVSGGLSVWAFRLLRVNRHRGHQPL
Ga0209470_10117288	3300026324	Soil	VKAYLLTTGTIFGLFSLGHIVELITRWRSPASDPWFMGGMALIVVLSAALSIWGFRLWMATHGGAA
Ga0209470_10164938	3300026324	Soil	RAYLVTTGTIFGLFSAGHLFELIAEWRPPASDPWFMLGMAAIILVSAGLSVWAFRLLKGAGRAAA
Ga0209801_10337834	3300026326	Soil	VKAYLLTTGTIFGLFSVWHIAELIMRWRPPASDPWFIGGVTLIAVASGGLSIWAFRLWKAIGGPAA
Ga0209266_10002971	3300026327	Soil	KAYLLTTGTIFGLFSLGHIVELITRWRSPASDPWFMGGMALIVVLSAALSIWGFRLWMATHGGAA
Ga0209266_10476141	3300026327	Soil	VKAYLLTTGTIFGLFSLGHIVELITRWRSPASDPWFMGGMALIVVLSAALSIWGFRLWMATHGGA
Ga0209375_11148271	3300026329	Soil	HALKTYLVVTGSIFALFAAMHVFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKTPA
Ga0209377_11335352	3300026334	Soil	VKRYLVTTGTLFGLFALGHLAELVVEWRPPGSDPWFMVGMALIILVSGALCVWAFRLLKATGRTTQTSLS
Ga0209057_10654345	3300026342	Soil	LRAYLVTTGTIFGLFSAGHLFELIAEWRPPASDPWFMLGMAAIILVSAGLSVWAF
Ga0209159_10234026	3300026343	Soil	LKTYLVVTGSIFALFAAMHIFELVKEWRSPAEDPWFTIGVSLIVIVSGALSVWAFRLLKTPA
Ga0209161_104188722	3300026548	Soil	IFGLFSAGHLFELIAEWRPPASDPWFMLGMAAIILVSAGLSVWAFRLLKGAGRAAA
Ga0209577_106198752	3300026552	Soil	VKAYLLTTGTIFGLFAAAHVVELIAEWRPPASDPWFVIGISLIIVVSAAFCVWAFRLLETIGPAVNR
Ga0209283_100471973	3300027875	Vadose Zone Soil	LKTYLLITGLIFGLFAAWHLFELVSQWRSPASDPWFTLTMALIVVVSGALSFWAFRLLKATGRAAS
Ga0209590_100547713	3300027882	Vadose Zone Soil	LRAYLVTTGTIFGLFSAGHLFELIAEWRPPVSDPWFMLGMAAIILVSAGLSVWAFRLLKAAGRAAA
Ga0335079_1001928112	3300032783	Soil	VSTGVKAYLACTGVLFGLLAAWHVVELVAGLRKPESDPGFVVGVALIILASGALSVWAFRLLAVKHGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F095190

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences