NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095156

Metagenome / Metatranscriptome Family F095156

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095156
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 55 residues
Representative Sequence RLKHMTDAMCHIERSKDGLQRSMYFSKNRDCDKDFSVYFTIHKDSVYYSYETISE
Number of Associated Samples 83
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 85.71 %
% of genes from short scaffolds (< 2000 bps) 94.29 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (81.905 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(21.905 % of family members)
Environment Ontology (ENVO) Unclassified
(49.524 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(62.857 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 37.35%    Coil/Unstructured: 62.65%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF06067DUF932 58.10
PF10263SprT-like 7.62
PF06745ATPase 3.81
PF02151UVR 1.90
PF13481AAA_25 0.95
PF05728UPF0227 0.95
PF06414Zeta_toxin 0.95



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A81.90 %
All OrganismsrootAll Organisms18.10 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001836|RCM27_1061398Not Available643Open in IMG/M
3300001934|GOS2267_104510All Organisms → cellular organisms → Bacteria1859Open in IMG/M
3300002835|B570J40625_100378349All Organisms → cellular organisms → Bacteria1388Open in IMG/M
3300002835|B570J40625_101484093Not Available557Open in IMG/M
3300002835|B570J40625_101610445Not Available530Open in IMG/M
3300004796|Ga0007763_11501353Not Available794Open in IMG/M
3300005582|Ga0049080_10028284Not Available1956Open in IMG/M
3300005662|Ga0078894_10381428Not Available1275Open in IMG/M
3300005731|Ga0076919_1012103All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium2063Open in IMG/M
3300005747|Ga0076924_1032500Not Available855Open in IMG/M
3300006802|Ga0070749_10475852Not Available682Open in IMG/M
3300006920|Ga0070748_1302146Not Available569Open in IMG/M
3300007094|Ga0102532_1170726Not Available1328Open in IMG/M
3300007216|Ga0103961_1139590All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes5797Open in IMG/M
3300007216|Ga0103961_1297106Not Available1695Open in IMG/M
3300007522|Ga0105053_10225398Not Available1779Open in IMG/M
3300007538|Ga0099851_1207925Not Available710Open in IMG/M
3300007541|Ga0099848_1135031Not Available922Open in IMG/M
3300007547|Ga0102875_1169272Not Available682Open in IMG/M
3300007548|Ga0102877_1063509Not Available1061Open in IMG/M
3300007692|Ga0102823_1060237Not Available1012Open in IMG/M
3300007960|Ga0099850_1071157Not Available1459Open in IMG/M
3300007960|Ga0099850_1377708Not Available527Open in IMG/M
3300007972|Ga0105745_1110077All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → Thermosphaera → Thermosphaera aggregans817Open in IMG/M
3300007974|Ga0105747_1086483Not Available965Open in IMG/M
3300007974|Ga0105747_1090529All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage946Open in IMG/M
3300007992|Ga0105748_10219426Not Available794Open in IMG/M
3300008110|Ga0114343_1050127All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1619Open in IMG/M
3300008113|Ga0114346_1073977All Organisms → Viruses → Predicted Viral1626Open in IMG/M
3300008113|Ga0114346_1143205All Organisms → Viruses → Predicted Viral1031Open in IMG/M
3300008116|Ga0114350_1155275Not Available631Open in IMG/M
3300008258|Ga0114840_1045665Not Available698Open in IMG/M
3300008266|Ga0114363_1133156Not Available847Open in IMG/M
3300008450|Ga0114880_1099284Not Available1129Open in IMG/M
3300009075|Ga0105090_10352074Not Available899Open in IMG/M
3300009423|Ga0115548_1274254Not Available517Open in IMG/M
3300011010|Ga0139557_1037172Not Available849Open in IMG/M
3300011011|Ga0139556_1032426Not Available767Open in IMG/M
3300011995|Ga0153800_1013986Not Available800Open in IMG/M
3300012012|Ga0153799_1089056Not Available552Open in IMG/M
3300012017|Ga0153801_1031718Not Available934Open in IMG/M
3300012212|Ga0150985_113754806Not Available967Open in IMG/M
3300012666|Ga0157498_1064360Not Available564Open in IMG/M
3300012729|Ga0157625_1241496All Organisms → cellular organisms → Bacteria958Open in IMG/M
3300012734|Ga0157615_1325886All Organisms → cellular organisms → Bacteria1067Open in IMG/M
3300012773|Ga0138290_1130203Not Available617Open in IMG/M
(restricted) 3300013125|Ga0172369_10113453Not Available1732Open in IMG/M
(restricted) 3300013129|Ga0172364_10968811All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300013372|Ga0177922_10131693All Organisms → cellular organisms → Bacteria1224Open in IMG/M
3300013372|Ga0177922_10135675All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage932Open in IMG/M
3300013372|Ga0177922_10380700Not Available617Open in IMG/M
3300013372|Ga0177922_10803650Not Available904Open in IMG/M
3300013372|Ga0177922_11248834Not Available1204Open in IMG/M
3300013372|Ga0177922_11275586Not Available561Open in IMG/M
3300014819|Ga0119954_1083256Not Available515Open in IMG/M
3300017707|Ga0181363_1036502Not Available912Open in IMG/M
3300017736|Ga0181365_1094501Not Available726Open in IMG/M
3300017747|Ga0181352_1053745All Organisms → cellular organisms → Bacteria1166Open in IMG/M
3300017754|Ga0181344_1227993Not Available519Open in IMG/M
3300017761|Ga0181356_1049525Not Available1452Open in IMG/M
3300017761|Ga0181356_1248483Not Available508Open in IMG/M
3300017778|Ga0181349_1009547All Organisms → cellular organisms → Bacteria4039Open in IMG/M
3300017778|Ga0181349_1108678Not Available1032Open in IMG/M
3300017780|Ga0181346_1167276Not Available812Open in IMG/M
3300017780|Ga0181346_1250346Not Available619Open in IMG/M
3300017780|Ga0181346_1310260Not Available533Open in IMG/M
3300017784|Ga0181348_1210395Not Available692Open in IMG/M
3300017784|Ga0181348_1324627Not Available509Open in IMG/M
3300019784|Ga0181359_1218622Not Available601Open in IMG/M
3300019784|Ga0181359_1245582Not Available546Open in IMG/M
3300020151|Ga0211736_10827607Not Available511Open in IMG/M
3300020162|Ga0211735_11483485Not Available1542Open in IMG/M
3300020197|Ga0194128_10073529All Organisms → cellular organisms → Bacteria2275Open in IMG/M
3300020198|Ga0194120_10308633Not Available790Open in IMG/M
3300020204|Ga0194116_10158907All Organisms → Viruses → Predicted Viral1343Open in IMG/M
3300020205|Ga0211731_10478642Not Available645Open in IMG/M
3300020506|Ga0208091_1031201Not Available596Open in IMG/M
3300020515|Ga0208234_1001290Not Available4049Open in IMG/M
3300020544|Ga0207937_1027884Not Available882Open in IMG/M
3300021957|Ga0222717_10507516Not Available648Open in IMG/M
3300021960|Ga0222715_10712118Not Available504Open in IMG/M
3300021962|Ga0222713_10228702Not Available1225Open in IMG/M
3300021962|Ga0222713_10658713Not Available603Open in IMG/M
3300022179|Ga0181353_1092935All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage749Open in IMG/M
3300022179|Ga0181353_1106756Not Available683Open in IMG/M
3300022190|Ga0181354_1084689Not Available1043Open in IMG/M
3300022190|Ga0181354_1228264Not Available541Open in IMG/M
3300022407|Ga0181351_1180299Not Available728Open in IMG/M
3300023184|Ga0214919_10457896Not Available803Open in IMG/M
3300024346|Ga0244775_10177449Not Available1792Open in IMG/M
3300024346|Ga0244775_11240269Not Available579Open in IMG/M
3300025585|Ga0208546_1070683Not Available808Open in IMG/M
3300025889|Ga0208644_1128101Not Available1199Open in IMG/M
3300027608|Ga0208974_1068793Not Available985Open in IMG/M
3300029302|Ga0135227_1040557Not Available548Open in IMG/M
3300031578|Ga0307376_10391321Not Available915Open in IMG/M
3300031787|Ga0315900_10880441Not Available605Open in IMG/M
3300031963|Ga0315901_10300004Not Available1332Open in IMG/M
3300031963|Ga0315901_11143525Not Available532Open in IMG/M
3300034012|Ga0334986_0263685Not Available930Open in IMG/M
3300034061|Ga0334987_0785315Not Available533Open in IMG/M
3300034062|Ga0334995_0414226Not Available839Open in IMG/M
3300034064|Ga0335001_0604116Not Available576Open in IMG/M
3300034092|Ga0335010_0324830Not Available872Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake21.90%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater13.33%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater8.57%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous7.62%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake6.67%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton5.71%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater4.76%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water3.81%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water3.81%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater2.86%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.86%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic1.90%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.90%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.95%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.95%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.95%
Freshwater, Surface IceEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice0.95%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.95%
Marine PlanktonEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton0.95%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater0.95%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater0.95%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.95%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.95%
MEnvironmental → Aquatic → Marine → Unclassified → Unclassified → M0.95%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine0.95%
Marine HarborEnvironmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor0.95%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.95%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001836Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM27, ROCA_DNA191_0.2um_MCP-N_C_3aEnvironmentalOpen in IMG/M
3300001934Estuary microbial communities from Chesapeake Bay, Maryland, USA - MOVE858EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300004796Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300005731Seawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14EnvironmentalOpen in IMG/M
3300005747Seawater microbial communities from Vineyard Sound, MA, USA - control T14EnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300007094Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)EnvironmentalOpen in IMG/M
3300007216Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface and Bottom layer) 16 sequencing projectsEnvironmentalOpen in IMG/M
3300007522Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007547Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02EnvironmentalOpen in IMG/M
3300007548Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3EnvironmentalOpen in IMG/M
3300007692Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743EnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300007972Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0umEnvironmentalOpen in IMG/M
3300007974Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2umEnvironmentalOpen in IMG/M
3300007992Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2umEnvironmentalOpen in IMG/M
3300008110Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NAEnvironmentalOpen in IMG/M
3300008113Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NAEnvironmentalOpen in IMG/M
3300008116Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NAEnvironmentalOpen in IMG/M
3300008258Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NAEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300009075Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015EnvironmentalOpen in IMG/M
3300009423Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423EnvironmentalOpen in IMG/M
3300011010Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface IceEnvironmentalOpen in IMG/M
3300011011Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300011995Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012017Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012666Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2EnvironmentalOpen in IMG/M
3300012729Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES157 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012734Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES144 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012773Freshwater microbial communities from Lake Simoncouche, Canada - S_140212_E_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013125 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_11.25mEnvironmentalOpen in IMG/M
3300013129 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cmEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300014819Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011AEnvironmentalOpen in IMG/M
3300017707Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.NEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017747Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.NEnvironmentalOpen in IMG/M
3300017754Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.DEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020197Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65mEnvironmentalOpen in IMG/M
3300020198Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015019 Mahale Deep Cast 65mEnvironmentalOpen in IMG/M
3300020204Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surfaceEnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300020506Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020515Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020544Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300022179Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.NEnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025585Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300029302Marine harbor viral communities from the Indian Ocean - SRB3EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300034012Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027EnvironmentalOpen in IMG/M
3300034061Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034064Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054EnvironmentalOpen in IMG/M
3300034092Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
RCM27_106139823300001836Marine PlanktonKHMTDAMAHIERSKDGLQRKIYFSKNRDCDKDFEMYFAISNKGISYAYGNAE*
GOS2267_10451043300001934MarineMTDAMCHIERSKDGLERSMHFSKNRDCDKDFKMYFSIYKDSVQYAFEQADENE*
B570J40625_10037834913300002835FreshwaterFAGSNRLKHMTDAMCHIERSKDGLQRKLYFSKNRDCDKDFEVFFTIHKDNVYYSYGQVNE
B570J40625_10148409313300002835FreshwaterHMTDAMCHIERSKDGLQRKMFFSKNRDCDKDFEIFFSIHKDSVYYSYGQTND*
B570J40625_10161044523300002835FreshwaterTDAMCHVDRSRDGLTRSLHFSKNRDCDKDFKVYFSIHKDSVYYSYELSND*
Ga0007763_1150135313300004796Freshwater LakeDFVGSNRLKHMVDAFCNVERSKDGLERSLFFSKNRDCDKDFKVFFSIFNGGVHYAYEMEKQD*
Ga0049080_1002828433300005582Freshwater LenticEEFVGSNRLKHMMEAFCTVERSKDGLERTMHFSKNRDCDKDFRIFFSIYKDGVHYAYNQAE*
Ga0078894_1038142813300005662Freshwater LakeSNRLKHMMEAFCKVERSRDGLERSLHFEKNRDCDKDFKVYFSIYQDGVHYSYEMENEN*
Ga0076919_101210313300005731MAMCMIERSKDGLERSMYFSKNRDCDKDFKIYFTIYKESVQYAFERADDE*
Ga0076924_103250013300005747MarineGSNRLKHMTDAMCMIERSKDGLERSMYFSKNRDCDKDFKIYFTIYKESVQYAFERADDE*
Ga0070749_1047585223300006802AqueousLKHMTDAMCHIERSKDGLERSIHFSKNRDCDKDFKMFFSIHQDTVHYSYEFTND*
Ga0070748_130214623300006920AqueousRLKHMVDAFCHVTRSRDGLERSLHFTKNRDCDKDFKIYFSIYKDGVHYSYERVDE*
Ga0102532_117072643300007094Freshwater LakeLKHMVDAFCHVERSRDGLERSLHFTKNRDCDKDFKVYFSIYNGGVHYAYEMEKAD*
Ga0103961_1139590103300007216Freshwater LakeRLKHMTDAMCHIERSKDGLQRKLYFSKNRDCDKDFEVFFTIHKDNVYYSYGQVSETNA*
Ga0103961_129710653300007216Freshwater LakeKHMMEAFAKVERSKDGLERTIHFEKNRDCDKDFKIYFSIYNDGVYYAFNQEE*
Ga0105053_1022539813300007522FreshwaterDEFAGSNRLKHMMEAYCRVDKSKDGLERSLHFEKNRDCDKDFKIYFSIYQEGVHFAFNQDEN*
Ga0099851_120792523300007538AqueousGDFVGSNKLKHMMEAYCYLEKSKDGLERSLYFEKNRDCDKDFKVFFSIYNGTVSYSYEFVSE*
Ga0099848_113503133300007541AqueousTKSGDFAGSNRLKHMVDAYCNVERSKDGLERSLHFSKNRDCDKDFKVFFSIYNGVVHYAYEMEKQD*
Ga0102875_116927223300007547EstuarineAGSNRLKHMTDAMCHVERSKDGLARSLHFSKNRDCDKDFKLYFTIYNDSIHYSYETINN*
Ga0102877_106350913300007548EstuarineNRLKHMTDAMCHVERSKDGLARSLHFSKNRDCDKDFKLYFTIYNDSIHYSYETINN*
Ga0102823_106023713300007692EstuarineRLKHMTDAMCHIERSKDGLQRSMYFSKNRDCDKDFSVYFTIHKDSVYYSYETISE*
Ga0099850_107115733300007960AqueousKHMMESYCKVERSKDGLERSLRFEKNRDCDKDFKIFFSIYKDGVHFALNQDE*
Ga0099850_137770813300007960AqueousDAMCHIERSKDGLQRKMFFSKNRDCDKDFDVYFTIHKDSVHYSYEMVSE*
Ga0105745_111007723300007972Estuary WaterMMDAMCHIERSRDGLERTIHFSKNRDCDKDFKIHFAIHNDSVHYAYEQVNQD*
Ga0105747_108648313300007974Estuary WaterHVERSKDGLARSLHFSKNRDCDKDFKLYFTIYNDSVHYSYETTND*
Ga0105747_109052913300007974Estuary WaterVERDKDGLQRSLHFSKNRDCDKDFKVYFSIFQDHVHYSYETVSE*
Ga0105748_1021942613300007992Estuary WaterMHIDRSRDGLERTIHFSKNRDCDKDFKVHFAIHNDSVHYAYEQVNQE*
Ga0114343_105012733300008110Freshwater, PlanktonMTDGMCHVERDKDGLQRSLHFSKNRDCDKDFKVYFSIFQDFVHYSYETVSE*
Ga0114346_107397713300008113Freshwater, PlanktonVDAFCHVERSRDGLERSLHFTKNRDCDKDFKIYFSIYNGGVHYAYETEKAD*
Ga0114346_114320513300008113Freshwater, PlanktonAFCNVERSKDGLERSLFFSKNRDCDKDFKVFFSIFNGGVHYAYEMEKQD*
Ga0114350_115527523300008116Freshwater, PlanktonMTKSGDFVGSNRLKHMVDAFCNVERSKDGLERSLFFSKNRDCDKDFKVFFSIFNGGVHYAYEMEKQD*
Ga0114840_104566533300008258Freshwater, PlanktonVGSNRLKHMVDAFCNVERSKDGLERSLFFSKNRDCDKDFKVFFSIFNGGVHYAYEMEKQD
Ga0114363_113315623300008266Freshwater, PlanktonSNRLKHMTDAMCHIERSKDGLQRKMFFSKNRDCDKDFEIFFTIHKDSVYYSYGQTND*
Ga0114880_109928413300008450Freshwater LakeMMEAYCAIERSKDGLERSMHFEKNRDCDKDFKIFFSIYKDGVHYAFGGEE*
Ga0105090_1035207413300009075Freshwater SedimentMTDGMCHIEKSKDGLERSMYFSKNRDCDKDFKMYFTIYNDTVMYSYASQAEQVEVA*
Ga0115548_127425423300009423Pelagic MarineIDAMCHIERSKDGLTRSMYFSKNRDCDKDFSVYFTIHKDSVFYSYETIND*
Ga0139557_103717213300011010FreshwaterEFAGSNRLKHMTDGMCHIERSKDGLQRSMHFSKNRDCDKDFKMYFSFYKDKVFYTFEEEEKQ*
Ga0139556_103242623300011011FreshwaterGSNRIKHMTDSMAHIERSKDRLQRTIYFSKNRDCDKDFKMYFSFYKDKVFYTFEEEEKQ*
Ga0153800_101398623300011995FreshwaterAMCHIERSKDGLQRKMFFSKNRDCDKDFEIFFSIHKDSVYYSYGQTND*
Ga0153799_108905613300012012FreshwaterMCHIERSKDGLQRSMYFSKNRDCDKDFSVHFTIHKDSVYYSYETISE*
Ga0153801_103171823300012017FreshwaterSNRLKHMMDAMMHIDRSRDGLERTIHFSKNRDCDKDFKIHFAIHNDSVHYSYSEVNQD*
Ga0150985_11375480613300012212Avena Fatua RhizosphereNRLKHMMDAQAIIEKSKDGLERTIHFDKNRDCDKDFKMYFSITKDGVFYTYEMITE*
Ga0157498_106436023300012666Freshwater, Surface IceLXXXXGSNRLKHMVDAFCHVERSKDGLERSLYFSKNRDCDKDFKVFFSIYNGGVHYAYEMEKAD*
Ga0157625_124149623300012729FreshwaterQGDFAGSNRLKHMTDAMCHIERSKDGLARSMYFSKNRDCDKDFSVHFTIHKDSVYYSYETINN*
Ga0157615_132588613300012734FreshwaterRLKHMTDAMCHIERSKDGLARSMYFSKNRDCDKDFSVHFTIHKDSVYYSYETINN*
Ga0138290_113020323300012773Freshwater LakeHIERSKDGLARSMYFSKNRDCDKDFSVHFTIHKDAVFYSYETINN*
(restricted) Ga0172369_1011345313300013125FreshwaterAGSNRLKHMMEAFCKVERSKDGLERTIHFEKNRDCDKDFKIYFSIYKDGVHYAFNQAEE*
(restricted) Ga0172364_1096881113300013129SedimentNRLKHMTDAMCHSEYSKDKLERSMHFSKNRDCDKDFKLFFAIGQENVHYSYENSNQDY*
Ga0177922_1013169323300013372FreshwaterFAGSNRLKHMTDAMCHVERSKDGLARSLHFSKNRDCDKDFKMYFTIYNDSVHYSYETTND
Ga0177922_1013567513300013372FreshwaterAMCHVERDKDGLQRSLHFSKNRDCDKDYKVYFSIFQDFVHYSYETVSE*
Ga0177922_1038070023300013372FreshwaterMTDAMAHVERSRDGLTRSIHFSKNRDCDKDFKMYFSIHKDSVYYSYELSND*
Ga0177922_1080365013300013372FreshwaterKSDEFAGSNRLKHMMEAFCKVERSRDGLERTLHFEKNRDCDKDYKIFFSIYQDGVFYAYNQEE*
Ga0177922_1124883443300013372FreshwaterDFVGSNRLKHMVDSYCNVERSKDGLERSLFFSKNRDCDKDFKVFFSIFNGGVHYAYELEKAD*
Ga0177922_1127558623300013372FreshwaterCHVERDKSGLTRTLHFSKNRDCDKDFKMYFTINQDTVHYTYETENEN*
Ga0119954_108325623300014819FreshwaterTTDAMCHIERSKDGLQRSMYFSKNRDCDKDFSVYFTIHKDSVYYSYETISE*
Ga0181363_103650213300017707Freshwater LakeFAGSQRLKHMMEAFCKVERSKDGLERTLHFEKNRDCDKDFKIYFSIYNDGVHYAFNQEE
Ga0181365_109450123300017736Freshwater LakeLKHMMEAFCTVERSKDGLERTMHFSKNRDCDKDFRIFFSIYKDGVHYAYNQAE
Ga0181352_105374513300017747Freshwater LakeRLKHMTDAMCHVERSKDGLSRSLHFSKNRDCDKDFSVYFTIHKDSVYYSYETINN
Ga0181344_122799313300017754Freshwater LakeTNRLKHMMEAFCKVERSKDGLERTLHFEKNRDCDKDFKIFFSIYQDGVFYAFNQEE
Ga0181356_104952513300017761Freshwater LakeRDSNRLKHMMEAFCKVERSKDGLERTLHFEKNRDCDKDFKIYFSIYNDGVYYAFNQNEE
Ga0181356_124848323300017761Freshwater LakeHMTDAMCHIERSKDGLTRSMYFSKNRDCDKDFSVYFTIHKDSVFYSYETIND
Ga0181357_106701213300017777Freshwater LakeFCHVERSRDGLERSLHFTKNRDCDKDFKVYFSIYNGGVHYAYEMEKAD
Ga0181349_100954713300017778Freshwater LakeRLKHMVDAYCNVERSKDGLERSLHFSKNRDCDKDFKVFFSIYNGGVHYAYEMEKQD
Ga0181349_110867823300017778Freshwater LakeMEAFCKVERSKDGLERTLHFEKNRDCDKDFKIYFSIYNDGVYYAFNQNEE
Ga0181346_116727613300017780Freshwater LakeKHMTDAMCHIERSKDGLARSMYFSKNRDCDKDFSVHFTIHKDSVYYSYETISE
Ga0181346_125034623300017780Freshwater LakeIKHMTDSMAHIERSKDRLQRTIYFSKNRDCDKDFKMYFSFYKDKVFYTFEEEEKQ
Ga0181346_131026013300017780Freshwater LakeKSDEFAGSNRLKHMMEAFCKVERSRDGLERSLHIEKNRDCDKDYKIYFSIYKDGVHYALNQAEEQN
Ga0181348_121039533300017784Freshwater LakeEFVGSNRLKHMMEAYCAIERSKDGLERSMHFEKNRDCDKDFKIYFSIYNGGVYYTFGGE
Ga0181348_132462713300017784Freshwater LakeNRLKHMVDAFCHVTRSKDGLERSLYFSKNRDCDKDFKVYFSIYNGGVHYAYETANQND
Ga0181359_121862223300019784Freshwater LakeHIERSRDGLERSIFFSKNRDCDKDFKLFFSIWKDDVFYSYEMDKEHA
Ga0181359_124558213300019784Freshwater LakeKEAFCKVERSKDGLERSLHFEKNRDCDKDFKVFFSIYKEGVHYSFELEKED
Ga0211736_1082760723300020151FreshwaterLKHMVDAFCHVERSRDGLERSLHFTKNRDCDKDFKVYFSIYNGGVHYAYEMEKAD
Ga0211735_1148348533300020162FreshwaterMMEAFCKVERSKDGLERSLFFEKNRDCDKDLKVYFSIYNEGIYYAYEMEKTE
Ga0194128_1007352963300020197Freshwater LakeGSNRLKHMTDAMCHIERSKDGLQRKMFFSKNRDCDKDFEIFFAIHKDSVYYSYGQTND
Ga0194120_1030863313300020198Freshwater LakeAGSNRLKHMTDAMCHIERSKDGLQRKMFFSKNRDCDKDFEIFFAIHKDSVYYSYGQTND
Ga0194116_1015890743300020204Freshwater LakeNRLKHMMEAFCKVERSRDGLERSLHFEKNRDCDKDFKVYFSIYQDGVHYAYEMEKED
Ga0211731_1047864213300020205FreshwaterMTDGMCHVERDKDGLQRSLHFSKNRDCDKDFKVYFSIFQDFV
Ga0208091_103120113300020506FreshwaterSMAHIERSRDRLQRTIYFSKNRDCDKDFKMYFSFYQDKVFYTFEEEEQQ
Ga0208234_100129043300020515FreshwaterTDSMAHIERSRDRLQRTIYFSKNRDCDKDFKMYFSFYQDKVFYTFEEEEQQ
Ga0207937_102788413300020544FreshwaterNRIKHMTDAMAHIERSKDGLERSIFFSKNRDCDKDFKMYFSIWKDDVFYSFEMDKEQA
Ga0222717_1050751623300021957Estuarine WaterKHMTDAMAHIEVAKDGLDRSIYFSKNRDCDKDYKIFFSIYGDGVHYAFEQEDKQ
Ga0222715_1071211813300021960Estuarine WaterMTDAMCHIERSKESNQRLMYFSKNRDCDKDFDLYFTIQKDSVHYSYETIKED
Ga0222713_1022870213300021962Estuarine WaterFAGSNRLKHMTDAMCHIERSKDGLQRKMFFSKNRDCDKDFEIFFTIHKDSVYYSYGQTND
Ga0222713_1065871313300021962Estuarine WaterRLKHMTDAMCHIERSKDGLQRSMYFSKNRDCDKDFSVYFTIHKDSVYYSYETVSA
Ga0181353_109293523300022179Freshwater LakeMTDAMCHVERDKDGLQRSLHFSKNRDCDKDFKVYFNIFQDFVHYSYETVSE
Ga0181353_110675623300022179Freshwater LakeMTDAMCHIERSKDGLQRKLYFSKNRDCDKDFEVFFTIHKDNVYYSYGQVNE
Ga0181354_108468913300022190Freshwater LakeNRLKHMVDAFCNVERSKDGLERSLFFSKNRDCDKDFKVFFSIFNGGVHYAYEMEKQD
Ga0181354_122826423300022190Freshwater LakeNHVEKDKDGLTRSLHFSKNRDCDKDFKLYFTIFKDSVHYSYESNND
Ga0181351_118029933300022407Freshwater LakeNRLKHMMEAFCKVERSRDGLERSMHFEKNRDCDKDFKVYFSIYQDGVHYAYEMEKED
Ga0214919_1045789613300023184FreshwaterTDAMCHIERSKDGLQRSMYFSKNRDCDKDFSVYFTIHKDSVYYSYETISE
Ga0244775_1017744913300024346EstuarineGSNRLKHMTDGMCHIEKSKDGLERSMYFSKNRDCDKDFKMYFTIYNDTVMYSYVSQAEQVEVA
Ga0244775_1124026923300024346EstuarineSNRLKHMTDAMCHIERSKDGLQRSMYFSKNRDCDKDFSVYFTIHKDSVYYSYETVSA
Ga0208546_107068313300025585AqueousFVGSNRIKHMTDAMGHVERSKDGMERSIYFSKHRDCDKDYKLLFAIGSEGVHYSYEPVKD
Ga0208644_112810133300025889AqueousDFAGSNRLKHMVDAYCNVERSKDGLERSLHFSKNRDCDKDFKVFFSIYKDSVHYSYEMEKQD
Ga0208974_106879323300027608Freshwater LenticEFVGSNRLKHMMEAFCTVERSKDGLERTMHFSKNRDCDKDFRIFFSIYKDGVHYAYNQAE
Ga0135227_104055723300029302Marine HarborMTDAMCHIERSKDGLERSMYFSKNRDCDKDFKMYFSIYKDMVQYAFERADDE
Ga0307376_1039132133300031578SoilKGGEFSGSNRLKHMTDAMCHIERNKDGTERSLYFSKNRDSDKDFKVFFAISGDAVYYTYELIKEDN
Ga0315900_1088044113300031787FreshwaterSDDFAGSNRLKHMMEAFCKVERSRDGLERSLFFEKNRDCDKDFKVFFSIYNDGIHYAYEMEKAD
Ga0315901_1030000413300031963FreshwaterDAFCHVERSKDGLERSLYFSKNRDCDKDFKVFFSIYNGGVHYAYEMEKAD
Ga0315901_1114352523300031963FreshwaterGSNRLKHMVDAFCHVERSKDGLERSLYFSKNRDCDKDFKVFFSIYNGGVHYAYEMEKQD
Ga0334986_0263685_752_9103300034012FreshwaterMVDAFCNVDRSKDGLERSLYFSKNRDCDKDFKVFFSIFNGGVHYAYEMEKQD
Ga0334987_0785315_9_1673300034061FreshwaterMMEAFCKVERSKDGLERSLFFEKNRDCDKDFKVFFSIYNDGIHYAYEMEKAD
Ga0334995_0414226_664_8193300034062FreshwaterMTDAMCHIERSKDGLQRKMFFSKNRDCDKDFDVYFTIHKDSVHYSYETISE
Ga0335001_0604116_1_1353300034064FreshwaterIERSKDGLQRKMFFSKNRDCDKDFDVYFTIHKDSVHYSYETISE
Ga0335010_0324830_684_8423300034092FreshwaterMTDAMCHIERSKESNQRLMYFSKNRDCDKDFDLYFTIQKDSIHYSYETIKED


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