Metagenome / Metatranscriptome Family F095126

Overview

Basic Information

• Family ID: F095126
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 105
• Average Sequence Length: 72 residues
• Representative Sequence: MRRILLLSLALPFLLGSKAAAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGTFGYGQPKGLYGKA
• Number of Associated Samples: 91
• Number of Associated Scaffolds: 105

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 100.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.00 %
• Associated GOLD sequencing projects: 91
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (99.048 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.143 % of family members)
• Environment Ontology (ENVO): Unclassified (30.476 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (32.381 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: Yes
• Secondary Structure distribution:
  α-helix: 23.40%
  β-sheet: 17.02%
  Coil/Unstructured: 59.57%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF14023	DUF4239	5.71
PF08245	Mur_ligase_M	3.81
PF02875	Mur_ligase_C	2.86
PF03704	BTAD	1.90
PF00069	Pkinase	1.90
PF13540	RCC1_2	0.95
PF14534	DUF4440	0.95
PF01965	DJ-1_PfpI	0.95
PF01694	Rhomboid	0.95
PF01980	TrmO	0.95
PF13489	Methyltransf_23	0.95
PF01494	FAD_binding_3	0.95
PF05368	NmrA	0.95
PF13620	CarboxypepD_reg	0.95
PF12697	Abhydrolase_6	0.95
PF07883	Cupin_2	0.95
PF08241	Methyltransf_11	0.95
PF05649	Peptidase_M13_N	0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.62
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.90
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	1.90
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	1.90
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.95
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.95
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.95
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG1720	tRNA (Thr-GGU) A37 N6-methylase	Translation, ribosomal structure and biogenesis [J]	0.95
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.95

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.05 %
All Organisms	root	All Organisms	0.95 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.05 %
cellular organisms	root	All Organisms → cellular organisms	0.95 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.05 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.95 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300012955|Ga0164298_10045065	All Organisms → cellular organisms → Bacteria	2083

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.10%
Host-Associated	Host-Associated	21.90%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.43%
Plants	Host-Associated → Plants	21.90%
Aquatic	Environmental → Aquatic	6.67%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.05%
Sediment	Environmental → Aquatic → Sediment	5.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.86%
Marine	Environmental → Aquatic → Marine	0.95%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.95%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.71%
Loam	Environmental → Terrestrial → Soil → Loam	4.76%
Sand	Environmental → Terrestrial → Soil → Sand	3.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.90%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.95%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.95%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.95%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.19%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	15.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.81%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.95%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.95%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.95%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	15.24%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.52%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.57%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.86%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.86%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.90%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.90%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.95%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.95%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.95%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.95%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.95%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental
3300003321	Sugarcane bulk soil Sample H1	Environmental
3300004052	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2	Environmental
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental
3300009804	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40	Environmental
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental
3300014314	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D2	Environmental
3300015254	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10D	Environmental
3300015372	Soil combined assembly	Host-Associated
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated
3300025993	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404 (SPAdes)	Environmental
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated
3300026090	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2 (SPAdes)	Environmental
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental
3300034662	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)	Environmental
3300034665	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R4 (Metagenome Metatranscriptome)	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J12802_102072222	3300000890	Soil	MRRALFLSLALTFAFGARAMAQTCTGMPSFSAGQMQVTAGGSFEDGASSFGGTFGY
JGI11643J12802_110908721	3300000890	Soil	MRRMLLLSIALPFYLSAQAAAQTCVGMPSFSSGRMQVAGGGQFADGANSFDGTF
JGI10214J12806_100669134	3300000891	Soil	MRRTLLLSLVLPLSLLTTRAAAQTCVGMPSFSSGQMQIAGGGSFADGASSFGGTFGY
soilH1_101726681	3300003321	Sugarcane Root And Bulk Soil	MRRALLLSLALPFLLGNAAEAQTCVGMPSFSTGRMQVSAGGAFADGASSVAGTFGYGTPKGLYGKAGIGSTSYDAFDGSSFDLNLGGGYQI
Ga0055490_102569891	3300004052	Natural And Restored Wetlands	MRRMLLLSLALPLMLGTRAAAQTCVGMPSFSSGQMQVAAGGSFADGASSFGGTFGYGAPQGLYGKAGIGSTSYDGLDGSSLDLNVA
Ga0063455_1000623351	3300004153	Soil	MRRILLLSLALPFLLGSKAAAQTCTGMPSFTSGQMQVGAGGQFADGTSSFAGTFGYGQPKSFYGKAALGTTSYDGLDGSSLD
Ga0062595_1005713842	3300004479	Soil	MRRFLVLSIALPFYLSTQAAAQTCVGMPSFSSGRMQVTGGGQFADGANSFDGTFGYGVPKSLYG
Ga0062594_1014600611	3300005093	Soil	MRRILLLSLAVPFLLAAKAAAQACAGMPSFSSGPMQIAAGGSFADGVSSFGGTFGYGTPKSFYGKAG
Ga0062594_1025647221	3300005093	Soil	MRRILTLSLVLPFYLATQAAAQTCVGMPSFSTGQMQVAGGGQFANGANSFGGTFGYGVPKGLYGKAGVGTTSYDGLNGSS
Ga0066685_107529592	3300005180	Soil	MRRILILSLVLPLYLTAQAAAQTCVGMPSFSSGQMQLAGGGQFADGANSFGGTFGYGTPKGLYG
Ga0070683_1019741091	3300005329	Corn Rhizosphere	MRRILLLSLALLFLLGSKAAAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGTFGYGQPKGFY
Ga0070682_1016222612	3300005337	Corn Rhizosphere	MRRILLLSLALPFLLGSKAVAQTCVGMPSFSSGKMQVGAGSQFADGTSSFAGTFGY
Ga0070659_1013633461	3300005366	Corn Rhizosphere	MRRALFLSLALTFAFGARAMAQTCTGMPSFSAGQMQVTAGGSFADGTSSFGGTFGYGQPKSFYGKAALGTTSYDGLDGSSVDFGVNGGYQIALKSSVPVQ
Ga0070706_1003764271	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MQRTLLLSLVLPLTLLTTRAAAQTCVGMPSFSTGQMQIAGGGSFADGTNSFGGTFGYGSPKAL
Ga0070696_1000233291	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRRILTLSLVLPFYLATQAAAQTCVGMPSFSTGQMQVAGGGQFANGANSFGGTFGYGVPKGLYGKAG
Ga0079220_103554701	3300006806	Agricultural Soil	MRRTILLSLALPLCLSAQAVAQTCVGMPSFAAGRMQVSGGAQFADGGNSVGALFGYGAPKGLYGKAGIGSTSYDAFNGSSFDLNFSGGYQ
Ga0079220_118369272	3300006806	Agricultural Soil	MRRILVLAMALPFCLSTQARAQACTGMPSFSSGRMQVAGGGQFGDG
Ga0075430_1016481381	3300006846	Populus Rhizosphere	MRRALFLSLALTFVFGARAMAQTCTGMPSFSAGQMQVTAGGSFADGTSSFGGTFGYGQPKSFYG
Ga0075431_1019312841	3300006847	Populus Rhizosphere	MRRILLLSLALPLLLGSKAAAQACTGMPSFSSGPMQITAGGSFADGTSSFGGTFGYG
Ga0075433_104193532	3300006852	Populus Rhizosphere	MRRFLVLSIALPFYLTTQAAAQACVGMPSFSSGQMQLAGGAQFADGGNSFGGTFG
Ga0075433_106623082	3300006852	Populus Rhizosphere	MRRILILSLAFPLYLITQAAAQTCAGMPAFSSGKMQIAGGGQFADGANSFGGTFGYG
Ga0075425_1003892191	3300006854	Populus Rhizosphere	MRRILTLSLVLPFYLATQAAAQTCVGMPSFSTGQMQLAGGGQFANGANSFGGTF
Ga0075424_1010626772	3300006904	Populus Rhizosphere	MRRTVILSLAFTLALGAHAAAQTCVGMPAFSSGHMQVAGGGQFADGTSSFGGTFGYGTPKSLYGKA
Ga0075436_1004449322	3300006914	Populus Rhizosphere	MRRILALSLALPFTLLTSRAAAQTCVGMPAFSSGQMQISGGGAFADGMSSFGGSFGYG
Ga0075436_1009269263	3300006914	Populus Rhizosphere	MRRIFLLSLALPFLLGSKAVAQTCVGMPSFSSGKMQVGAGSQFADGTSSFAGTFGYGQAKGLYGKGSLGTTS
Ga0075435_1002458822	3300007076	Populus Rhizosphere	MRRFLVLSIALPFYLTTQAAAQACVGMPSFSSGRMQVAGGGQFADGTNSFDGTFGYGVPK
Ga0066709_1011715631	3300009137	Grasslands Soil	MRRILLLSLALPFTLLTTRAAAQTCVGMPSFSSGRMQVAGGGTFADGVSSFGGSFGYGSPKGLYGKAGVGST
Ga0099792_108523031	3300009143	Vadose Zone Soil	MRRILALSLALPFTLLTTRAAAQTCVGMPSFSSGQMQVSGGGSFADGASSFGGTFGYGSPKALYGKAGVGTTSYDALSGSSFD
Ga0105249_111590662	3300009553	Switchgrass Rhizosphere	MRRALFLSLALTFAFGARAMAQTCTGMPSFSAGQMQVTAGGSFADGTSSFGGTF
Ga0105065_10635651	3300009803	Groundwater Sand	MRRILLLSLALPLLLGSKAAAQACAGMPSFSSGPMQITAGGSFADGTSSFGGTFGYGMPTGLYGKAGVGTTSYDGIDGSSFDFGVAGGY
Ga0105063_10343931	3300009804	Groundwater Sand	MRRILLLSLALPLLLGSKAAAQACAGMPSFSSGPMQITAGGSFADGSSSFGGTFGYGMPTGLYGKAGIGTTSYDAFDGSSFDFGVGGGYQVPLHTSRR
Ga0105058_11421921	3300009837	Groundwater Sand	MRRILLLSLALPLLLGSKAAAQACAGMPSFSSGPMQITAGGTFADGTSSFGGTFGYGVSNGLYGKAGIGTTSYDGLDGSSF
Ga0126315_112673891	3300010038	Serpentine Soil	MRRALLLSLALSLMLGARASAQTCAGMPSFANGQMQVGAGATFADGGSSFGGSF
Ga0134082_105689662	3300010303	Grasslands Soil	MRRILFLSLALPFTLLTTKAAAQTCVGMPSFSSGQMQISGGGAFADGASSFGGSFGYGSP
Ga0134126_118723052	3300010396	Terrestrial Soil	MRRILILSLAFPLYLSTQAAAQTCAGMPAFSNGHMQIAGGAQFQDGASGFGGTFGYGTPKGL*
Ga0134126_128267522	3300010396	Terrestrial Soil	MRRFLVLSIALPFYLSTQAAAQTCVGMPSFSSGRMQVTGGGQFTDGANSFDGTFGY
Ga0134124_125336642	3300010397	Terrestrial Soil	MRRILLLSLALPFLLGSKAVAQTCVGMPSFSSGKMQVGAGSQFADGTSSFAGTFGYGQAKGLYGKGSLGT
Ga0134124_128219351	3300010397	Terrestrial Soil	MRRTLLLSLVLPLTFLTTRAAAQTCVGMPSFASGQMQIAGGGSFADGTSSFGGT
Ga0134123_112394971	3300010403	Terrestrial Soil	MRRILLLSLALPFLLASKAAAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGT
Ga0138513_1000610261	3300011000	Soil	MRRTLLLSLVLPLSLLTTKAVAQTCVGMPSFASGQMQIAGGGSFADGTSSFGGTFGYGTPKALYGKAGVGTTSYDGFD
Ga0105246_125860001	3300011119	Miscanthus Rhizosphere	MRRALFLSLALTFAFGARAMAQTCTGMPSFSAGQMQVTAGGSFADGTSSFGGTFGYGQPKSFYGKAALGTTSYDGLDGSSVDFGVNGGYQIALKSSVPV
Ga0137438_12589651	3300011431	Soil	MRRTLLLSLALPLTLLTTKAAAQTCVGMPSFSSGQMQIAGGGSFADGANSFGGTFGYGTPKALYGKAGIGTTSYDAFNG
Ga0137365_107370642	3300012201	Vadose Zone Soil	MRRILLLSLALPFTLLATKAAAQTCVGMPSFSSGRMQVAGGGSFADGVSSFGGSFGYGTPKGLYGKAGVGATSYD
Ga0137374_101174641	3300012204	Vadose Zone Soil	MRRILLLSLALPFYLSTQARAQTCVGMPSFSSGRMQVVGGGQFADGANSFGGTFGYGMPKGL
Ga0137367_106502942	3300012353	Vadose Zone Soil	MRRILLLSLALPFYLSTQARAQTCVGMPSFSSGRMQVVGGGQFADGANSFGGTFGYGMPKGLYGKAGIGTTSYDGLG
Ga0137366_110978301	3300012354	Vadose Zone Soil	MRRILLLSLALPFTLLTTKAAAQTCVGMPSFSSGRMQVAGGGSFADGVSSFGGSFGYGTPKGLYGTAGVGATSYDAL
Ga0137384_113035841	3300012357	Vadose Zone Soil	MRRILLLSLALPFTLLTTKAAAQTCVGMPSFSSGRMQVAGGGSFADGVSSFGGTFGYGTPKGLYGKAGVGATSYDALSGSSFDLNFGGGYQIPLQTSR
Ga0137358_107328701	3300012582	Vadose Zone Soil	MRRILALSLALPFALLTTNAAAQTCVGMPSFSSGQMQVSGGGSFADGASSFGGSFGYGSPKALYGKAGVGTTSYDALSGSSFDLSVGGGYQ
Ga0157283_102705301	3300012907	Soil	MRRILLLSLALPFLLGSKAVAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGTFGYGQPKGLYGKAALGTTSYDGLDGSSLDLG
Ga0157302_103217191	3300012915	Soil	MRRALFLSLALTFAFGARAMAQTCTGMPSFSAGQMQVTAGGSFADGTSSFGGTFGYGQPKSFYGKAALGTTSYDGLDGSSVDFGVNGGYQI
Ga0137407_109935161	3300012930	Vadose Zone Soil	MRRILALSLALPFALLTTNAAAQTCVGMPSFSSGQMQVSGGGSFADGA
Ga0137407_121829061	3300012930	Vadose Zone Soil	MRRIFMLSLALPFYLTAQAAAQTCTGMPAFSSGHMQIAGGGQFADGANSFGGTFGYGTPKNLYGKAGIGTTS
Ga0137407_122410381	3300012930	Vadose Zone Soil	MRRILLLSLALPFTLLTTKAAAQTCVGMPSFSSGRMQVAGGGSFADGVSSFGGSFGYGAPKGLYG
Ga0164300_109210122	3300012951	Soil	MRRTVILSLAFTLALGAHAAAQSCVGMPAFSSGHMQVAGGGQFANGTSSFFFSNDSATTKSLYGKAGIGTTSYD
Ga0164298_100450654	3300012955	Soil	MRRILILSLAFPLYLSTQAAAQTCAGMPAFSSGKMQIAGGGQFADGANSFGGTFGYGTPKSLYGKAGIGTT*
Ga0164301_114760641	3300012960	Soil	MRRIFMLSLALPFYLTAQAAAQTCTGMPAFSSGHMQIAAGGQFADGANSFGGTFGYGTPKSLYGKAGIGTTSY
Ga0164304_110591171	3300012986	Soil	MRRIFILSLALPFYLTAQAAAQTCTGMPAFSSGHMQIAGGGQFADGANSF
Ga0164306_106710431	3300012988	Soil	MRRTVILSLAFTLALGAHAAAQTCVGMPAFSSGHMQVAGGGQFANGTSSFGGTFGYGTPKSLYG
Ga0164305_106445012	3300012989	Soil	MRRILILSLAFPLYLSTQAAAQTCAGMPAFSSGKMQIAGGGQFADGANSFGGTFGYG
Ga0075316_10135322	3300014314	Natural And Restored Wetlands	MRRALFLSLALTFALGARAMAQTCTGMPSFSAGQMQVTGGGSFADGTSSFGGTFGYGQPKSFYGKAALGTTSYDGFDGSSLDLGV
Ga0180089_11421371	3300015254	Soil	MRRILLLSLALPLLLGSKAAAQACAGMPSFSSGPMQITAGGSFADGSSSFGGTFGYGRPTGLYGKAGIGTTSY
Ga0132256_1007324451	3300015372	Arabidopsis Rhizosphere	MRRILLLSLALPFLLGSKAAAQTCVVMPSFTSGQMQVGAGGQFADGTSSFAGTFGYG
Ga0132257_1002893121	3300015373	Arabidopsis Rhizosphere	MRRTVILSLALTFALGAHAAAQTCVGMPAFSSGHMQIAGGGQFADGANSFGGTFGYGTPKSLYGKAGIGTT
Ga0132255_1020150411	3300015374	Arabidopsis Rhizosphere	MRRIFILSLALPFYLTAQAAAQTCTGMPAFSSGHMQIAGGGQFADGANSFGGTFGYGTPKSLYGKAGIGTTSYDAFNGSSFDFNVGGGYQ
Ga0190266_111958731	3300017965	Soil	MRRALFLSLALTFAFGARAMAQTCTGMPSFSAGQMQVTAGGSFADGTSSFGGTFGYGQPKSFYGKA
Ga0184621_103306681	3300018054	Groundwater Sediment	MRRTLLLSLVLPLSLLTTKAAAQTCVGMPSFASGQMQIAGGGSFADGTSSFGGTFGYGTPKALYGKAGVGTTSYDGFDGSSFDLSVGGGYQIPLQTSR
Ga0184615_106489181	3300018059	Groundwater Sediment	MRRTILLSLALSLSLLTTRAAAQTCVGMPSFSSGQMQIAGGGSFADGTSSFGGTFGYGTPKGLYGKAGIGTTSYDGFDGSS
Ga0184618_102662482	3300018071	Groundwater Sediment	MRRIVLLSLVLPFTLLTTKAAAQTCVGMPAFSSGPMQVAAGAGFTDGGTSFLGTFGYGKP
Ga0184629_106088031	3300018084	Groundwater Sediment	MRRTILLSLALSLSLLTTRAAAQTCVGMPSFSSGQMQIAGGGSFADGTNSFGGTFGYGTPKALYGKAGIGTTSYDGFDG
Ga0190272_124775831	3300018429	Soil	MRRILLLSLALPLLLGSKAAAQACAGMPSFSSGPMQITAGGSFADGTSSFGGTFGYGMPTGLYGKAGIGSTSYDGLDGSS
Ga0207671_106945781	3300025914	Corn Rhizosphere	MRRILVLAMALPFCLSTQARAQACTGMPSFSSGRMQVAGGGQFGDGANSFDGTFGYGVPKGLYGKAEIGTTSYDG
Ga0207679_103420871	3300025945	Corn Rhizosphere	MRRILLLSLALPFLLGSKAAAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGTFGYGQPKGLYGKAAL
Ga0208415_10005876	3300025993	Rice Paddy Soil	MRRALLLSLALPLMLGTRAAAQTCVGMPSFSSGQMQVAAGSSFADGASGFGGTFGY
Ga0207677_122931401	3300026023	Miscanthus Rhizosphere	MRRILVLAMALPFCLSTQARAQACTGMPSFSSGRMQVAGGGQFGDGANSFDGTFGYGVPKGLYGKAEIGTTSYDGLSGSSVDYGIGGGYQIPLR
Ga0208912_10380602	3300026090	Natural And Restored Wetlands	MRRALFLSLALTFALGARAMAQTCTGMPSFSAGQMQVTAGGSFADGTSSFGGTFGYGQPKSFYGKAA
Ga0247828_111248061	3300028587	Soil	MRRILLLSLALPFLLGSKAAAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGTFGYGQPKGLYGKAALGT
Ga0307313_101016001	3300028715	Soil	MRRTLLLSLVLPLSLLTTKAVAQTCVGMPSFASGQMQIAGGGSFADGTSSFGGTFGYGTPKALYGKAGVGTTSYDGFDGSSFDLSV
Ga0307282_103091422	3300028784	Soil	MRRTLLLSLVLPLTLLTTRAAAQTCVGMPSFSSGQMQIAGGGSFADGASSFGGTFGYGTP
Ga0307284_100822952	3300028799	Soil	MRRTPLLSLVLPLTLLTTRAAAQTCVGMPSFSSGQMQIAGGGSFADVASS
Ga0307308_103938931	3300028884	Soil	MRRTLLLSLVLPLTLLTTKAAAQTCVGMPSFSSGQMQIAGGGSFADGVSSFGGTFGYGTPKALYGKAGIGTTSYDGFDGSSLDLSVGGGYQVPL
Ga0247826_100203394	3300030336	Soil	MRRILLLSLALPFLLGSKAVAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGTFGLGQPKGLYGKAALGTTSY
Ga0308187_104776821	3300031114	Soil	MRRALFLSLALTFAFGARAMAQTCTGMPSFSAGQMQVTAGGSFADGTSSFGGTFGYGQPKSFYGKAALGTTSYDGLDGSSVDFGVNG
(restricted) Ga0255310_102019771	3300031197	Sandy Soil	MRRIYLLSLALPLVLGGRAAAQTCVGMPSFSAGQMQIAGGGNFTDGASSFGGTFGYGAPKGLYGKAGIGTTSYDG
Ga0310886_109007601	3300031562	Soil	MRRILLLSLALPFLLGSKAAAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGTFGYGQPKGLYGKA
Ga0310813_102232091	3300031716	Soil	MRRILLLSLALPFLLGSKAVAQTCVGMPSFTSGKMQVGAGSQFADGTSSFAGTFGYGQAKGLYGKGSLGTTS
Ga0307410_111223611	3300031852	Rhizosphere	MRRALLLSLALPLMFGGRAAAQTCVGMPAFSSGRMQVAAGGTFADGASSFGGTFGYGVPKNFYGKAGIGSTSYDAFDGSSFDLNL
Ga0310892_100456153	3300031858	Soil	MRRALFLSLALTFAFGARAMAQTCTGMPSFSAGQMQVTAGGSFADGTSNFGGSFGYGQPKNFYGKA
Ga0310892_106983721	3300031858	Soil	MRRILLLSLALPFLLGSKAVAQTCVGMPSFSSGKMQVGAGSQFADGTSSFAGTFGYGQAKGLYGKASLGTTSYDGLDGSSLDLGANAGYQVA
Ga0310900_113606011	3300031908	Soil	MRRILVLAMALPFCLSTQARAQACTGMPSFSSGRMQVAGGGQFGDGANSF
Ga0310891_103065921	3300031913	Soil	MRRILLLSLALPFLLGSKAAAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGTFGYGQPKGLYGKAALGTTSYDGLDGSSLDLGANAGY
Ga0308174_110227071	3300031939	Soil	MRRIFILSLAFPLYLSTQAAAQTCAGMPAFSSGKMQLSGGAQFANGANSFGGNFAYG
Ga0310901_104394871	3300031940	Soil	MRRALFLSLALTFVFGARAMAQTCTGMPSFSAGQMQVTAGGSFADGTSSFGGTFGYGQPKSFYGKAALGTTSYDGMDGSSLDFGVSGGYQIALKSSR
Ga0310884_106803802	3300031944	Soil	MRRILLLSLALPFLLGSKAAAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGTFGYGQPKGLYGKAALGTTSYDGLDGSSL
Ga0307416_1002553731	3300032002	Rhizosphere	MRRALLLSLALPLMFGGRAAAQTCVGMPAFSSGRMQVAAGGTFADGASSFGGTFGYGVPKNFYGKAGIGSTSYDAFDGSSFD
Ga0307414_102242462	3300032004	Rhizosphere	MRRALLLSLALPLMFGGRAAAQTCVGMPAFSSGRMQVAAGGTFADGASSFGGTFGYGVPKNFYGKAGIGSTSYDAFDGSSFDLNLGGGYQI
Ga0307414_106816522	3300032004	Rhizosphere	MRRTFLLSLALPLALVTSRVAAQTCVGMPSFTTGRMQVTAGGSFADGASSFGGTFGLGAPTGLYGKAGLGTTQYDAFDGSS
Ga0307414_112377971	3300032004	Rhizosphere	MRRILLLSLALPFLLGSKAVAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGTFGYGQPK
Ga0310896_105319381	3300032211	Soil	MRRALFLSLALTFAVGAKAVAQSCTGMPSFSAGKMQVTAGGSFADGASSFGGTFGYGQPKSFYGKAALGTTSYDGLDGSSVDFGVNGGYQIALKSSVPVQV
Ga0310811_1000379321	3300033475	Soil	MRRILLLATALSFYLSTQAKAQACAGMPSFSSGRMQVAGGGQFANGANTFDGTFGYGVPKGL
Ga0310811_109194012	3300033475	Soil	MRRILLLSLALPFLLGSKAVAQTCVGMPSFTSGKMQVGAGSQFADGTSSFAGTFGYGQ
Ga0247829_100996502	3300033550	Soil	MRRILLLSLALPFLLGSKAAAQTCVGMPSFTSGQMQVGAGGQFADGTSSFA
Ga0247830_100837751	3300033551	Soil	MRRILLLSLALPFLLGSKAAAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGTFGYGQ
Ga0247830_115593281	3300033551	Soil	MRRILLLSLAIPFLLGSKAAAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGTFGYGQPKGLYGKAALGTTSYDGLDG
Ga0314783_113328_329_592	3300034662	Soil	MRRILLLSLALPFLLGSKAVAQTCVGMPSFTSGQMQVGAGSQFADGTSSFAGTFGYGQAKGLYGKASLGTTSYDGLDGSSLDLGANAG
Ga0314787_079551_282_581	3300034665	Soil	MRRILLLSLALPFLLGSKAAAQTCVGMPSFTSGQMQVGAGGQFADGTSSFAGTFGYGQPKGLYGKAALGTTSYDGLDGSSLDLGANAGYQVALKTAKPAE