Metagenome / Metatranscriptome Family F095125

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095125
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	48 residues
Representative Sequence	MALRERYIKDANGEGTAAALDDSSYGNQSFQEMKARLHRAIITKLDLTK
Number of Associated Samples	90
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.04 %
% of genes near scaffold ends (potentially truncated)	96.19 %
% of genes from short scaffolds (< 2000 bps)	95.24 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.286 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (13.333 % of family members)
Environment Ontology (ENVO)	Unclassified (54.286 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.810 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.65% β-sheet: 0.00% Coil/Unstructured: 49.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01656	CbiA	25.71
PF13614	AAA_31	9.52
PF07811	TadE	1.90
PF06564	CBP_BcsQ	0.95
PF07722	Peptidase_C26	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	Cell cycle control, cell division, chromosome partitioning [D]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.29 %
Unclassified	root	N/A	5.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.29 %
Unclassified	root	N/A	5.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.29 %
Unclassified	root	N/A	5.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	83.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.57 %
Unclassified	root	N/A	5.71 %

Name	Rank	Taxonomy	Distribution
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	82.86 %
Unclassified	root	N/A	5.71 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.81 %

Name	Rank	Taxonomy	Distribution
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	82.86 %
Unclassified	root	N/A	5.71 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %

Name	Rank	Taxonomy	Distribution
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	82.86 %
Unclassified	root	N/A	5.71 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %

Name	Rank	Taxonomy	Distribution
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	82.86 %
Unclassified	root	N/A	5.71 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %

Name	Rank	Taxonomy	Distribution
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	82.86 %
Unclassified	root	N/A	5.71 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101799202	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	803	Open in IMG/M
3300000559\|F14TC_100218119	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	714	Open in IMG/M
3300000956\|JGI10216J12902_105854526	Not Available	1380	Open in IMG/M
3300000956\|JGI10216J12902_116289152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	626	Open in IMG/M
3300004633\|Ga0066395_10611273	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	640	Open in IMG/M
3300005331\|Ga0070670_100889695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	807	Open in IMG/M
3300005332\|Ga0066388_106086486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	609	Open in IMG/M
3300005338\|Ga0068868_100612574	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	966	Open in IMG/M
3300005341\|Ga0070691_11072443	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	506	Open in IMG/M
3300005353\|Ga0070669_101292160	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	632	Open in IMG/M
3300005364\|Ga0070673_100677129	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	946	Open in IMG/M
3300005444\|Ga0070694_101655746	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300005530\|Ga0070679_101147295	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	722	Open in IMG/M
3300005545\|Ga0070695_101312465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	598	Open in IMG/M
3300005546\|Ga0070696_101567350	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	565	Open in IMG/M
3300005547\|Ga0070693_101173500	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	589	Open in IMG/M
3300005563\|Ga0068855_101774023	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
3300005578\|Ga0068854_102271187	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	502	Open in IMG/M
3300005617\|Ga0068859_101035606	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	902	Open in IMG/M
3300005617\|Ga0068859_101073717	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	885	Open in IMG/M
3300005618\|Ga0068864_101014219	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	824	Open in IMG/M
3300005618\|Ga0068864_101286211	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300005718\|Ga0068866_10644585	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	720	Open in IMG/M
3300005841\|Ga0068863_100934210	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	868	Open in IMG/M
3300005841\|Ga0068863_101668707	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	647	Open in IMG/M
3300005841\|Ga0068863_101771466	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	627	Open in IMG/M
3300005843\|Ga0068860_101717358	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	650	Open in IMG/M
3300005843\|Ga0068860_102136497	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	581	Open in IMG/M
3300005844\|Ga0068862_101957387	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	596	Open in IMG/M
3300006806\|Ga0079220_10374077	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	917	Open in IMG/M
3300006881\|Ga0068865_101790252	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	555	Open in IMG/M
3300006904\|Ga0075424_102179855	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	583	Open in IMG/M
3300007004\|Ga0079218_10666119	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	967	Open in IMG/M
3300007004\|Ga0079218_11769073	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300009093\|Ga0105240_11460248	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	718	Open in IMG/M
3300009148\|Ga0105243_11496360	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	699	Open in IMG/M
3300009156\|Ga0111538_11760577	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	780	Open in IMG/M
3300009174\|Ga0105241_11641798	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	623	Open in IMG/M
3300009176\|Ga0105242_12246554	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	591	Open in IMG/M
3300009177\|Ga0105248_11115887	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	891	Open in IMG/M
3300010036\|Ga0126305_10293438	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1054	Open in IMG/M
3300010037\|Ga0126304_10260070	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1144	Open in IMG/M
3300010038\|Ga0126315_10330860	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	946	Open in IMG/M
3300010041\|Ga0126312_10888379	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	649	Open in IMG/M
3300010042\|Ga0126314_10848081	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	674	Open in IMG/M
3300010043\|Ga0126380_11288565	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	635	Open in IMG/M
3300010045\|Ga0126311_10247596	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1321	Open in IMG/M
3300010358\|Ga0126370_12222740	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	541	Open in IMG/M
3300010360\|Ga0126372_11629840	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	685	Open in IMG/M
3300010362\|Ga0126377_13569314	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	503	Open in IMG/M
3300010397\|Ga0134124_11199792	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	779	Open in IMG/M
3300010397\|Ga0134124_11935540	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	626	Open in IMG/M
3300010399\|Ga0134127_11563465	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	733	Open in IMG/M
3300010400\|Ga0134122_10774013	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	912	Open in IMG/M
3300011333\|Ga0127502_10324738	All Organisms → cellular organisms → Bacteria → Proteobacteria	1966	Open in IMG/M
3300012207\|Ga0137381_10162270	All Organisms → cellular organisms → Bacteria → Proteobacteria	1927	Open in IMG/M
3300012353\|Ga0137367_10473538	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	883	Open in IMG/M
3300012354\|Ga0137366_10267659	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1264	Open in IMG/M
3300012469\|Ga0150984_118334880	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1198	Open in IMG/M
3300012685\|Ga0137397_10527600	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	879	Open in IMG/M
3300012929\|Ga0137404_11359661	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	655	Open in IMG/M
3300012944\|Ga0137410_11411037	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	605	Open in IMG/M
3300012948\|Ga0126375_10406050	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	986	Open in IMG/M
3300012960\|Ga0164301_10881972	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	692	Open in IMG/M
3300012989\|Ga0164305_10255001	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1270	Open in IMG/M
3300013297\|Ga0157378_12412532	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	578	Open in IMG/M
3300013306\|Ga0163162_10430947	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1451	Open in IMG/M
3300013306\|Ga0163162_11793606	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	701	Open in IMG/M
3300014325\|Ga0163163_11368597	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	769	Open in IMG/M
3300014325\|Ga0163163_11525302	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	729	Open in IMG/M
3300014487\|Ga0182000_10348642	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	637	Open in IMG/M
3300014969\|Ga0157376_12806722	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	527	Open in IMG/M
3300015371\|Ga0132258_13844586	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1022	Open in IMG/M
3300015374\|Ga0132255_105023651	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	560	Open in IMG/M
3300018027\|Ga0184605_10271343	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	770	Open in IMG/M
3300018476\|Ga0190274_12094663	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	662	Open in IMG/M
3300021073\|Ga0210378_10309875	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	592	Open in IMG/M
3300021445\|Ga0182009_10549316	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	613	Open in IMG/M
3300025899\|Ga0207642_10976119	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	545	Open in IMG/M
3300025911\|Ga0207654_10237438	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1216	Open in IMG/M
3300025911\|Ga0207654_10297298	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1097	Open in IMG/M
3300025911\|Ga0207654_10465357	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	889	Open in IMG/M
3300025911\|Ga0207654_11126800	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300025921\|Ga0207652_11905708	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	500	Open in IMG/M
3300025934\|Ga0207686_11291678	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	599	Open in IMG/M
3300025935\|Ga0207709_11208521	Not Available	623	Open in IMG/M
3300025942\|Ga0207689_10771830	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	811	Open in IMG/M
3300025961\|Ga0207712_10744065	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	858	Open in IMG/M
3300025981\|Ga0207640_10581683	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	945	Open in IMG/M
3300026088\|Ga0207641_10578881	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1097	Open in IMG/M
3300026095\|Ga0207676_10865731	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	884	Open in IMG/M
3300027639\|Ga0209387_1221094	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	528	Open in IMG/M
3300027886\|Ga0209486_10314705	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	925	Open in IMG/M
3300027909\|Ga0209382_10128913	All Organisms → cellular organisms → Bacteria → Proteobacteria	2945	Open in IMG/M
(restricted) 3300028043\|Ga0233417_10312822	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	711	Open in IMG/M
3300028381\|Ga0268264_12057312	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	580	Open in IMG/M
3300030496\|Ga0268240_10196227	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	514	Open in IMG/M
3300031852\|Ga0307410_11751642	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	551	Open in IMG/M
3300031944\|Ga0310884_10497978	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	715	Open in IMG/M
3300032205\|Ga0307472_102773758	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	501	Open in IMG/M
3300033412\|Ga0310810_11084597	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	669	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.43%
Host-Associated	Host-Associated	48.57%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	48.57%
Terrestrial	Environmental → Terrestrial	47.62%
Aquatic	Environmental → Aquatic	3.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	24.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.90%
Freshwater	Environmental → Aquatic → Freshwater	2.86%
Roots	Host-Associated → Plants → Roots	1.90%
Sediment	Environmental → Aquatic → Sediment	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.14%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	22.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.10%
Loam	Environmental → Terrestrial → Soil → Loam	10.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.90%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.95%
Lake	Environmental → Aquatic → Freshwater → Lake	0.95%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	22.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.10%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.90%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.95%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.95%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.95%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	13.33%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.67%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.95%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.95%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.95%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028043 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MG	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1017992022	3300000364	Soil	MALRERYVRDPNGTATSAGGEDNGYANQNFQEMKARLHRAIVTRMDLTKLNMLA
F14TC_1002181192	3300000559	Soil	MALRERYIKDTNGASTAVAEDGVFGNQSFQEIKARLHRAIISRLKLTKLNMLS
JGI10216J12902_1058545261	3300000956	Soil	MEQVNKGVYMALKERYIRDGNGDGTAARTDELYGNQSFQDIKARVHK
JGI10216J12902_1162891521	3300000956	Soil	MALRERYIKDQNAEGSATAIEESVYGNQSFQEMKARLHRAIITRLDLTKLNTLGA
Ga0066395_106112732	3300004633	Tropical Forest Soil	MALRERYVKDRINGLSSAIDDMLYSSQAFQEMKSRLHRAIISRMD
Ga0070670_1008896951	3300005331	Switchgrass Rhizosphere	MALRERYIKDSVEGTAGLVAEETVYGNQNFQELKARLHRSIITRLDLTKLNTLAPERVRSEVS
Ga0066388_1060864862	3300005332	Tropical Forest Soil	MALRERYIKDSNSDGTAAALEDSVYGNQSFQEMKARLHRAIITKLDLTKLNTLAPE
Ga0068868_1006125741	3300005338	Miscanthus Rhizosphere	MALRERYIKDQNGDGTAVALEESSVYGNQTFQEIKARLHRSIVTRLDLTKFNMLT
Ga0070691_110724431	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MALRERYIKESNGNGNADGTARADDLYANQVFQEIKARVHRAIITKMDLTKLNLLT
Ga0070669_1012921602	3300005353	Switchgrass Rhizosphere	MALKERYIRDGNGDGTAARSDDLYGNQSFQEIKARVHKAIITKMDLTK
Ga0070673_1006771291	3300005364	Switchgrass Rhizosphere	MALRERYIKDSVEGTAGLVAEETVYGNQNFQELKARLHRSIITRLDLTKLN
Ga0070694_1016557461	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MALRERYIKEINGNGDGTARAADDLYANQAFQEIKARVHRAIITKMDLTKLN
Ga0070707_1011890922	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MALRERYIKDTNGNTAAAPAEDGNQIFQDMKARLHRAIVSRVDLTKLSA
Ga0070679_1011472952	3300005530	Corn Rhizosphere	MALRERYIKESSVDGTAIAVDESVYGSQAFQELKARLHRAIISRLDLTK
Ga0070695_1013124652	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MALRERYIKEINGNGDGTARAADDLYANQAFQEIKARVHRAIITKMDLTKLNLLTPD
Ga0070696_1015673502	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MALRERYVKELNADGTAVRLDEGIYANQSFQEIKARLHRAIITRMDLTKLNTL
Ga0070693_1011735002	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MALRERYVKDQNGDGTGTVLEESVYGNQSFQEMKARLHKA
Ga0068855_1017740232	3300005563	Corn Rhizosphere	MALRERYIKERNGTGQTGALDEVLYGNQAFQEMKARLHRAIISRMDLVKLN
Ga0068854_1022711872	3300005578	Corn Rhizosphere	MALRERYIKDQNVDGSAAAMEEVGYGNQTFQEMKARLHRA
Ga0068859_1010356062	3300005617	Switchgrass Rhizosphere	MALRERYIKDQNGESAATVLEESAYGNQNFHEMKARLHKAIITRLDL
Ga0068859_1010737172	3300005617	Switchgrass Rhizosphere	MALRERYIKESNSDGTATALDDSVYGNKVFQEMKA
Ga0068864_1010142191	3300005618	Switchgrass Rhizosphere	MALRERYIKDQNGDGTAVALEESSVYGNQTFQEIKAR
Ga0068864_1012862111	3300005618	Switchgrass Rhizosphere	MALRERYIKESNADGAAAALDDSIYGNKLFQEMKARLHSAIVTRLDLTKLNTLA
Ga0068866_106445851	3300005718	Miscanthus Rhizosphere	MALRERYVKERNGNGATGALDDVLYSNQSFQEMKARLHRAII
Ga0068863_1009342101	3300005841	Switchgrass Rhizosphere	MALRERYIKDQNGEGAATVLEESVYSNQNFQEMKARLHKAII
Ga0068863_1016687071	3300005841	Switchgrass Rhizosphere	MALRERYVRDNGDGTAAARLDDGSYSNQTFQEIKARLHRAII
Ga0068863_1017714661	3300005841	Switchgrass Rhizosphere	MALRERYVRDPNGTAAAGADDGGYANQNFQEMKAR
Ga0068860_1017173581	3300005843	Switchgrass Rhizosphere	MALRERYIKDQNGEGAATVLEESGYGNQNFQEMKARLHKAII
Ga0068860_1021364971	3300005843	Switchgrass Rhizosphere	MALRERYVKERNGNGATGALDDVLYSNQSFQEMKARL
Ga0068862_1019573871	3300005844	Switchgrass Rhizosphere	MALRERYIKDINGTGTAVAAEDGNQIFQEMKARLHRA
Ga0068862_1020276582	3300005844	Switchgrass Rhizosphere	MALRERYIKDGNGNGTSAAAMAEDGNQVFQELKGRLHRAIVARLDVAKLS
Ga0079220_103740771	3300006806	Agricultural Soil	MALRERYIKETSVDGTATAVDESVYGTQSFQELKARLHRAIISRL
Ga0068865_1017902521	3300006881	Miscanthus Rhizosphere	MALRERYIKESNGEGTATALDDSVYGNKVFQDMKA
Ga0075424_1021798552	3300006904	Populus Rhizosphere	MALRERYIKDQNGDGTAATVDESAYGNQSFQEMKARLHKAIITRLDL
Ga0079218_106661191	3300007004	Agricultural Soil	MALRERYIKEVSPDGTAIAVDEAGYGNQSFQEMKARLHRAIITRLD
Ga0079218_117690732	3300007004	Agricultural Soil	MALRERYIKDINGDGTGTAAAEDPGHANQNFQEMKARLHRAIITRLDLTKLKSLPTDRVH
Ga0105240_114602482	3300009093	Corn Rhizosphere	MALRERYIKESNGDGTATATDESVYGNQVFQETKARLHRAI
Ga0105243_114963601	3300009148	Miscanthus Rhizosphere	MALRERYIKDANGEGTAAALDDSSYGNQSFQEMKARLHRAIITKLDLTK
Ga0111538_117605772	3300009156	Populus Rhizosphere	MALRERYIKESNGNGDGTARADDLYANQAFQEIKARVHRAIITKMDLTKLNLLT
Ga0111538_139796381	3300009156	Populus Rhizosphere	MALRERYVKDTAEGVAALAGEEGVYGNQTFQDLKARLHRSIITRLDLTKLNALAPDRVRSEVTPLVEELLIAEGTAL
Ga0105241_116417982	3300009174	Corn Rhizosphere	MALRERYIKDANGEGTAAALDDSTYGNQSFQEMKA
Ga0105242_122465542	3300009176	Miscanthus Rhizosphere	MALRERYIKESNGDGTATATDESVYGNQVFQETKARLHRAIISRLDLTKLNTLPADRI
Ga0105248_111158872	3300009177	Switchgrass Rhizosphere	MALRERYVKDSIEGTGALAAEEAVYANQNFQELKARLHRSIITRLDLAKLNALAPERVRSEVSRLVED
Ga0126305_102934382	3300010036	Serpentine Soil	MALRERYIKESNGDGTAAALDESVYGNKTFQEMKARLHSAIVKRLDLVKLNTL
Ga0126304_102600701	3300010037	Serpentine Soil	MALRERYVRDNGDGAAVRLEESGQGNHSFQEVKARLHRAIIARMDLKKLNTLSP
Ga0126315_103308602	3300010038	Serpentine Soil	MALRERYIKDSAEGTGSLVIDEAVYGNQNFQELKA
Ga0126312_108883791	3300010041	Serpentine Soil	MALRERYIKESNGEGTATALDDSVYGNKVFQDMKARLHSAIVKR
Ga0126314_108480811	3300010042	Serpentine Soil	MALRERYIKDSAEGTGSLVIDEAVYGNQNFQDLKARLHRSIITRLDLTKLNTLAPE
Ga0126380_112885651	3300010043	Tropical Forest Soil	MALRERYIKDQNGDGTGTVLEESGYGNQNLQEMKARLHKAIITRLLEHCAGAIA
Ga0126311_102475962	3300010045	Serpentine Soil	MALRERYIKDQNGDGTAVALEESSIYGNQSFQEIKARLHRSIVTRLDLTKFNMLSP
Ga0126370_122227401	3300010358	Tropical Forest Soil	MALRERYINEGTGSLVAEDAVYANQNFQELKARLHRTIITKLDLTKLNTLAQERVRSEDSKM
Ga0126372_116298402	3300010360	Tropical Forest Soil	MALRERYIKESNGEGTATAVDESVYGSQSFQELKARLHRAIISRLDLTKLNTLPADRIRAEVS
Ga0126377_135693141	3300010362	Tropical Forest Soil	MALRERYINEGTGSLVAEEIVFGNQNFQELKARLHRAIISRLDLTKLN
Ga0134124_111997921	3300010397	Terrestrial Soil	MALRERYIKDQNGEGTATVLEESVYGNQSFQEMKARLHKAII
Ga0134124_119355401	3300010397	Terrestrial Soil	MALRERYIKDGNGNSAAAPAEDSNQVFQEMKARLHRAIVTRLDLTKLSSL
Ga0134127_115634651	3300010399	Terrestrial Soil	MALRERYIKDQNGEGAATGLEESAYGNQNFHEMKARL
Ga0134122_107740132	3300010400	Terrestrial Soil	MALRERYIKDQNGEGAATGLEESAYGNQNFHEMKARLHKAIITRLDLTKL
Ga0127502_103247383	3300011333	Soil	MALRERYIKDSTEAAAALAAEEGVYGNQNFQELKARLHRSIITKLDLSKLNTLA
Ga0137381_101622701	3300012207	Vadose Zone Soil	MALRERYIKDKNGNGTAAAVEEVYGNQAFQEMKSRLHRAI
Ga0137377_112937811	3300012211	Vadose Zone Soil	MALRERYIKDGNGNAAAAPAEDGNQIFQDMKARLHRAIVSRVDLTKLS
Ga0137367_104735381	3300012353	Vadose Zone Soil	MALRERYIKDPNSNGSGEGTALAAEDIAYGNRGFQEMKAGLHRAI
Ga0137366_102676592	3300012354	Vadose Zone Soil	MALRERFIRDPNGNGTSPASDDVIYGNQSFQEMKARLHRAIVTRMDLT
Ga0150984_1183348802	3300012469	Avena Fatua Rhizosphere	MALRERYIRENGDGTAARLDETGYGNQSFQEVKARLHRAIITRIDLTKLNTLSPDRVHSEVSR
Ga0137397_105276001	3300012685	Vadose Zone Soil	MALRERYVRDLNGDGTAARLDESVYGNQTFQEVKARLHRAIIT
Ga0137404_113596612	3300012929	Vadose Zone Soil	MALRERYIKDSNGDGTAAALDEAIYSNQSFQEMKARLH
Ga0137410_114110371	3300012944	Vadose Zone Soil	MALRERYIKDANGNSAAAPAEDGNQSFQEMKARLHRAIVTRLDLTKL
Ga0126375_104060501	3300012948	Tropical Forest Soil	MALRERYIKDQNGEGSAATSEESVYGNQSFQEMKARLHRTI
Ga0164301_108819722	3300012960	Soil	MALKERYIRDGNGDGTAARTDDLYGNQSFQDIKARVHKAIITKMDLTKLN
Ga0164305_102550012	3300012989	Soil	MALRERYVRERNGNSGVASLDDVLYGNHAFQEMKARLHRAIISRMDLIKLNELPP
Ga0157378_124125321	3300013297	Miscanthus Rhizosphere	MALRERYIKDQNGDGTGTALEEVLYGNQNIQELKAHLHRAIVTKLDLTKLNM
Ga0163162_104309471	3300013306	Switchgrass Rhizosphere	MALRERYIKDQNGDGTATALEEGIYGNQNFQELKAHLH
Ga0163162_117936062	3300013306	Switchgrass Rhizosphere	MALRERYVRDNGDGTAAAKLDDGTYSNQTFQEIKARLHRAIITKMDLT
Ga0163163_113685972	3300014325	Switchgrass Rhizosphere	MALRERYIKDQNGEGTATVLEESVYGNQNFQEMKARLHKAIITRLDLTKLNTLAPDRVRA
Ga0163163_115253021	3300014325	Switchgrass Rhizosphere	MALRERYVKDQNGDGTAVALEESSVYGNQTFQEIKARLHRSIVTRL
Ga0182000_103486421	3300014487	Soil	MALRERFVRDQIGDGAAAALEESVYGNQNFQDIKARLHKAIITRLDL
Ga0157376_128067222	3300014969	Miscanthus Rhizosphere	MALRERYIKDQNGESAATVLEESAYGNQNFHEMKARLHKAII
Ga0132258_138445861	3300015371	Arabidopsis Rhizosphere	MALRERYIKEGNGDGTAVRGAEDLYTSTTFQEIKARVHRAIITKMDL
Ga0132255_1050236511	3300015374	Arabidopsis Rhizosphere	MALRERYVKDNGDGTGAARLEDGSYGNQTFQEIKARLHRAIITRVDLTK
Ga0184605_102713432	3300018027	Groundwater Sediment	MALRERYIKDPNGNGAGAAATAEDGNQVFQEMKARLHRAIVTRLDLA
Ga0190274_120946631	3300018476	Soil	MALRERYIRDNGDGTATRLEEAIQVNHTFQEVKARL
Ga0210378_103098752	3300021073	Groundwater Sediment	MALRERYVKDLKDANGNGVSLPVEDAIYGNQSFQEMKARLHRAIVTKLDLAKLNALSPE
Ga0182009_105493162	3300021445	Soil	MALRERYIKESSVDGTATAVDESVYGSQAFQELKARLHRAIISRLDLTKLNT
Ga0207642_109761192	3300025899	Miscanthus Rhizosphere	MALRERYVKERNGNGATGALDDVLYSNQSFQEMKARLHRAIILRMD
Ga0207654_102374382	3300025911	Corn Rhizosphere	MALRERFIKDSNGDGTAAALETSLHANQNFQELKARLHRA
Ga0207654_102972981	3300025911	Corn Rhizosphere	MALRERYIKDQNGEGTATVLEESIYGNQNFQEMKARLHKAIITKLDLTKLNTLAPDRVRA
Ga0207654_104653571	3300025911	Corn Rhizosphere	MALRERYIKDQNGESAATVLEESAYGNQNFHEMKARLHK
Ga0207654_111268002	3300025911	Corn Rhizosphere	MALRERYIKDQNGEGAATVLEESVYSNQNFQEMKARLHKAIISRLDVT
Ga0207652_119057081	3300025921	Corn Rhizosphere	MALRERYVRDNGDGTGTARLEDGSYSNQTFQEIKARLHKAIITRMDLTLLNTSSTE
Ga0207686_112916781	3300025934	Miscanthus Rhizosphere	MALRERYIKESNGDGTATATDESVYGNQVFQETKARLHRAIISRLDLTKLNTLPADRIRA
Ga0207709_112085212	3300025935	Miscanthus Rhizosphere	MALRERYIKENADGTAARLDEGGYGNQTFQEVKARLHRAIISRMDLKKLNALAP
Ga0207689_107718301	3300025942	Miscanthus Rhizosphere	MALRERYIKDQNGDGTATVLEESVYGNQNFQELKARLHKAIITRLDLTKLNA
Ga0207712_107440651	3300025961	Switchgrass Rhizosphere	MALKERYIRDGNGDGTAARSDDLYGNQSFQEIKARVHKAIITKMDL
Ga0207640_105816831	3300025981	Corn Rhizosphere	MALRERYVKDQNGDGAATVLEESAYGNQNFHEMKARLHKAIITRLDLTKLNTLAPD
Ga0207641_105788811	3300026088	Switchgrass Rhizosphere	MALRERYIKDQNGEGAATVLEESVYSNQNFQEMKARLHKAIISRL
Ga0207676_108657312	3300026095	Switchgrass Rhizosphere	MALRERYIKDNNSEGTATVLEESVYGNQNFQEMKA
Ga0209387_12210941	3300027639	Agricultural Soil	MALRERYIKEVSSDGTAIAVDEAGYGNQSFQEMKARLHRAIITRLDLTKLNM
Ga0209486_103147051	3300027886	Agricultural Soil	MALRERYIKEVSPDGTAIAVDEAGYGNQSFQEMKARLHRAIITRLDLTKLNMLSSDRVHA
Ga0209382_101289131	3300027909	Populus Rhizosphere	MALRERYIKDSVEGTGSLVAEEAVYGNQTYQELKARLHRSIITRLDLTK
(restricted) Ga0233417_103128221	3300028043	Sediment	MALRERYVKDRNGNGATGALDEVLYSNQAFQEMKARLHRAII
Ga0268264_120573121	3300028381	Switchgrass Rhizosphere	MALRERYIKENADGTAARLDEGGYGNQTFQEVKARLHRAIISRMDLKKLNALAPDRVHAE
Ga0268240_101962272	3300030496	Soil	MALRERYIKDQNGDGTAVALEESSIYGNQSFQEIKA
Ga0307410_117516422	3300031852	Rhizosphere	MALRERYVRDGDGTAARLDDGVYGNQGFQEIKARL
Ga0310884_104979781	3300031944	Soil	MALRERYIKENGDGTAAAAEESYGKQDFQEMKQRLHRAIISRLD
Ga0307472_1027737581	3300032205	Hardwood Forest Soil	MALRERYVRDKNGSGASTSLEDVLYGNQQFQEMKARLHRAIIT
Ga0310810_110845971	3300033412	Soil	MALRERYIKDINGTSAAVAAEDGNHIFQEMKARLHRAIVTRLDLNKL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters